AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0512320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512320 MtrunA17_Chr3g0120741 88.520 331 27 5 1 327 1 324 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512320 AT2G04360.1 60.440 273 104 2 55 327 49 317 1.50e-119 347
Msa0512320 AT2G04360.2 52.548 314 104 3 55 327 49 358 1.79e-111 328
Msa0512320 AT2G04360.4 67.633 207 64 1 121 327 17 220 4.73e-102 299
Msa0512320 AT2G04360.3 56.422 218 90 3 55 271 49 262 1.09e-84 256

Find 89 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAACACTGGCACCATTT+TGG 0.187033 3_4:+62068473 Msa0512320:CDS
ATATTACCGGTGTCTGGTTT+GGG 0.250210 3_4:-62066700 None:intergenic
ATGATATGACTGCTAGAAAA+TGG 0.306456 3_4:+62068503 Msa0512320:CDS
AGTTTCATTGATACCATTGC+TGG 0.307701 3_4:+62068658 Msa0512320:CDS
AATCAGATATTGCTTGCTTC+GGG 0.314268 3_4:+62068178 Msa0512320:intron
TGTTTCTGAATGGTATATAA+TGG 0.324424 3_4:+62066883 Msa0512320:CDS
TTGAAATTGATTGTTGAGTT+TGG 0.330756 3_4:+62068815 Msa0512320:three_prime_UTR
ACAGGTTTGACAAAGGTTCT+TGG 0.347641 3_4:+62068627 Msa0512320:intron
ATATCATTGTAAACCCAAAA+TGG 0.351254 3_4:-62068487 None:intergenic
GGTTTCCAGAGCACAAAATA+AGG 0.356685 3_4:-62067883 None:intergenic
AAATGTGTATTCATATTCAT+TGG 0.360711 3_4:-62068777 None:intergenic
TCTGCAAAGATATGTCTAAA+TGG 0.362447 3_4:-62068923 None:intergenic
GTTTCTGAATGGTATATAAT+GGG 0.364420 3_4:+62066884 Msa0512320:CDS
TATATTACCGGTGTCTGGTT+TGG 0.369304 3_4:-62066701 None:intergenic
TATAATGGGTTTGTGGCCTT+TGG 0.371657 3_4:+62066898 Msa0512320:CDS
AGTTGAAAGAAGTTTGATTA+TGG 0.377746 3_4:+62066337 Msa0512320:exon
ATTTGCTTTCCCTGAAGTAC+TGG 0.383210 3_4:-62068258 None:intergenic
TTGCTGCTACACCATCATTT+CGG 0.385003 3_4:+62066519 Msa0512320:CDS
AGCAATGGTATCAATGAAAC+TGG 0.385121 3_4:-62068656 None:intergenic
TTGAGCTCTGCTTCTTCGAC+AGG 0.390157 3_4:-62067916 None:intergenic
AACAATAACAGTAGTGGCCT+CGG 0.412664 3_4:+62066436 Msa0512320:CDS
AAGTTACAAGTTACAAGATT+GGG 0.413662 3_4:-62066377 None:intergenic
GAATCAGATATTGCTTGCTT+CGG 0.421963 3_4:+62068177 Msa0512320:intron
GAAGTTACAAGTTACAAGAT+TGG 0.425120 3_4:-62066378 None:intergenic
ATAATTTACGCTAGTTTAGC+CGG 0.429459 3_4:+62068211 Msa0512320:CDS
TTGAATTTGAAAGGAGATGA+TGG 0.440690 3_4:+62066839 Msa0512320:CDS
AGACGTTGAACTTCTCTTCA+AGG 0.442929 3_4:-62068980 None:intergenic
GGTAACTTGACTCTCTTTGT+TGG 0.445634 3_4:-62066573 None:intergenic
TAGTATATATTACCGGTGTC+TGG 0.446627 3_4:-62066706 None:intergenic
ATATTGCTTGCTTCGGGGAT+AGG 0.448524 3_4:+62068184 Msa0512320:CDS
CTCCACAACACTGCTGTTGT+TGG 0.454329 3_4:-62066594 None:intergenic
TGGATTCACTCCGACTCAAC+AGG 0.458729 3_4:-62068740 None:intergenic
TCTTCGACAGGAGGCGGTGG+AGG 0.459561 3_4:-62067904 None:intergenic
AATTGATTGTTGAGTTTGGT+TGG 0.481172 3_4:+62068819 Msa0512320:three_prime_UTR
GTTTCATTGATACCATTGCT+GGG 0.486547 3_4:+62068659 Msa0512320:CDS
CAACAGCAGTGTTGTGGAGG+AGG 0.487609 3_4:+62066598 Msa0512320:CDS
GCTTCTTCGACAGGAGGCGG+TGG 0.494152 3_4:-62067907 None:intergenic
CTACTCTTTCTCCGAAATGA+TGG 0.494266 3_4:-62066530 None:intergenic
ATTGATTGTTGAGTTTGGTT+GGG 0.497495 3_4:+62068820 Msa0512320:three_prime_UTR
GCAGACAGGAAGGGCCATAC+AGG 0.516734 3_4:-62067829 None:intergenic
TCTGCTTCTTCGACAGGAGG+CGG 0.519972 3_4:-62067910 None:intergenic
AATGGTATATAATGGGTTTG+TGG 0.520679 3_4:+62066891 Msa0512320:CDS
TAATTTACGCTAGTTTAGCC+GGG 0.521606 3_4:+62068212 Msa0512320:CDS
AGCTCTGCTTCTTCGACAGG+AGG 0.523272 3_4:-62067913 None:intergenic
TTCCTTCCACACATCTTCCC+CGG 0.524071 3_4:-62068230 None:intergenic
CATTGGCCGTATGTATCAGA+TGG 0.526906 3_4:-62068760 None:intergenic
TGAGAGTAAAGTAAAATCAA+TGG 0.530434 3_4:-62068455 None:intergenic
AGGAGTTTGTGCAATGGCAG+AGG 0.533565 3_4:-62068720 None:intergenic
TGTTACTTCCCACTGGAAGA+AGG 0.536692 3_4:+62066933 Msa0512320:CDS
CTGCTTTATACATTCTCCTA+CGG 0.539301 3_4:+62068684 Msa0512320:CDS
ATCAAGTGCTTGTTTCTGAA+TGG 0.542025 3_4:+62066873 Msa0512320:CDS
AGCATGCTGTTACTTCCCAC+TGG 0.542911 3_4:+62066926 Msa0512320:CDS
CGTAGGAGAATGTATAAAGC+AGG 0.556966 3_4:-62068683 None:intergenic
TTTCAACTTCAAATCGCACA+AGG 0.559541 3_4:-62066322 None:intergenic
TACCAACAACAGCAGTGTTG+TGG 0.561620 3_4:+62066592 Msa0512320:CDS
ACAATAACAGTAGTGGCCTC+GGG 0.564855 3_4:+62066437 Msa0512320:CDS
AGGTTGATAGTGAGGGCCGT+AGG 0.564890 3_4:-62068700 None:intergenic
GGAATCAAAAGTCGCTGCAA+CGG 0.573556 3_4:+62067960 Msa0512320:CDS
TGTTATGGACTAGTGAAAAG+TGG 0.573915 3_4:-62068890 None:intergenic
TGCACAAACTCCTGTTGAGT+CGG 0.576292 3_4:+62068730 Msa0512320:CDS
GTGAATCCATCTGATACATA+CGG 0.588899 3_4:+62068754 Msa0512320:exon
TAAAATCAATGGACATAACA+TGG 0.590376 3_4:-62068444 None:intergenic
TATAAAGCAGGCCCCAGCAA+TGG 0.590930 3_4:-62068671 None:intergenic
AGCAGTGTTGTGGAGGAGGA+AGG 0.592189 3_4:+62066602 Msa0512320:CDS
TCAACTTCAAATCGCACAAG+GGG 0.601051 3_4:-62066320 None:intergenic
GGGAAATACCTTCTTCCAGT+GGG 0.602141 3_4:-62066941 None:intergenic
TTTCATTGATACCATTGCTG+GGG 0.604297 3_4:+62068660 Msa0512320:CDS
AAGAAGCAGAGCTCAAAACA+TGG 0.606449 3_4:+62067923 Msa0512320:CDS
TATTACCGGTGTCTGGTTTG+GGG 0.608819 3_4:-62066699 None:intergenic
TTCAACTTCAAATCGCACAA+GGG 0.610767 3_4:-62066321 None:intergenic
TGGGAAATACCTTCTTCCAG+TGG 0.612952 3_4:-62066942 None:intergenic
GAAAGCAACAATAACAGTAG+TGG 0.613050 3_4:+62066430 Msa0512320:CDS
AGCCGGGGAAGATGTGTGGA+AGG 0.613592 3_4:+62068228 Msa0512320:CDS
TCTCTCCCCAAACCAGACAC+CGG 0.613768 3_4:+62066694 Msa0512320:CDS
GTTTAGCCGGGGAAGATGTG+TGG 0.614056 3_4:+62068224 Msa0512320:CDS
TCAATATACAGGTTTGACAA+AGG 0.614796 3_4:+62068620 Msa0512320:intron
ATCAGATATTGCTTGCTTCG+GGG 0.617901 3_4:+62068179 Msa0512320:intron
AACTTCAAATCGCACAAGGG+GGG 0.621546 3_4:-62066318 None:intergenic
CAACAACAGCAGTGTTGTGG+AGG 0.624485 3_4:+62066595 Msa0512320:CDS
AATGGCAGAGGTTGATAGTG+AGG 0.627029 3_4:-62068708 None:intergenic
ATGGCAGAGGTTGATAGTGA+GGG 0.631651 3_4:-62068707 None:intergenic
TGATGGTGTAGCAGCAACAG+AGG 0.642844 3_4:-62066513 None:intergenic
CTCAACAGGAGTTTGTGCAA+TGG 0.646011 3_4:-62068726 None:intergenic
AACAGCATGCTATACACCAA+AGG 0.654498 3_4:-62066914 None:intergenic
GATGGTGTAGCAGCAACAGA+GGG 0.657144 3_4:-62066512 None:intergenic
CAACTTCAAATCGCACAAGG+GGG 0.665215 3_4:-62066319 None:intergenic
GACATGCTATAGTTATGCTG+TGG 0.673610 3_4:-62068866 None:intergenic
TAATCTGCAACAACATCCCG+AGG 0.679788 3_4:-62066453 None:intergenic
AATTTACGCTAGTTTAGCCG+GGG 0.690077 3_4:+62068213 Msa0512320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATTCCAAAAAATTTAA+TGG - chr3_4:62067949-62067968 None:intergenic 15.0%
!! TAAATAATAGTATCCATAAT+TGG + chr3_4:62068040-62068059 Msa0512320:intron 15.0%
!!! ATCTTTTATATAGTATGATA+GGG - chr3_4:62068587-62068606 None:intergenic 15.0%
!!! TATCTTTTATATAGTATGAT+AGG - chr3_4:62068588-62068607 None:intergenic 15.0%
!!! AATTTTACTCTTTCTCTTAT+GGG + chr3_4:62066646-62066665 Msa0512320:CDS 20.0%
!! GATAAGATAGTATATATTAC+CGG - chr3_4:62066716-62066735 None:intergenic 20.0%
!!! AAAAAGCTTTTGAATTTGAA+AGG + chr3_4:62066830-62066849 Msa0512320:CDS 20.0%
!! AGTAAATTGAGTGAATAATT+CGG - chr3_4:62067190-62067209 None:intergenic 20.0%
!!! TTTTCATAAGTTATCCTAAA+AGG + chr3_4:62067302-62067321 Msa0512320:intron 20.0%
!!! CTATTTATAATAAGCCTTTT+AGG - chr3_4:62067319-62067338 None:intergenic 20.0%
!! AATCATCAAAAATTTAAGCA+CGG + chr3_4:62067512-62067531 Msa0512320:intron 20.0%
!! AATTATAATATTATCCTGAG+TGG - chr3_4:62067604-62067623 None:intergenic 20.0%
!!! TTAAAAATATTCAGGTTTTC+TGG - chr3_4:62068126-62068145 None:intergenic 20.0%
!! AGCTTAAAATAATGAATACA+AGG - chr3_4:62068328-62068347 None:intergenic 20.0%
!! AAATGTGTATTCATATTCAT+TGG - chr3_4:62068780-62068799 None:intergenic 20.0%
!! GATTAATTTTTGTGTTCACT+AGG + chr3_4:62066258-62066277 Msa0512320:five_prime_UTR 25.0%
! AGTTGAAAGAAGTTTGATTA+TGG + chr3_4:62066337-62066356 Msa0512320:exon 25.0%
! AAGTTACAAGTTACAAGATT+GGG - chr3_4:62066380-62066399 None:intergenic 25.0%
!!! ATTTTTTGTATTTCAGAGTG+GGG - chr3_4:62066403-62066422 None:intergenic 25.0%
!!! GATTTTTTGTATTTCAGAGT+GGG - chr3_4:62066404-62066423 None:intergenic 25.0%
!!! TGATTTTTTGTATTTCAGAG+TGG - chr3_4:62066405-62066424 None:intergenic 25.0%
!! CAATTTTACTCTTTCTCTTA+TGG + chr3_4:62066645-62066664 Msa0512320:CDS 25.0%
!! TGTTTCTGAATGGTATATAA+TGG + chr3_4:62066883-62066902 Msa0512320:CDS 25.0%
! GTTTCTGAATGGTATATAAT+GGG + chr3_4:62066884-62066903 Msa0512320:CDS 25.0%
! ATGCATATGCATATGAAAAT+GGG - chr3_4:62066964-62066983 None:intergenic 25.0%
! AGCTTAGAATTTAGTGTAAT+AGG - chr3_4:62067007-62067026 None:intergenic 25.0%
! TAAATTGAGTGAATAATTCG+GGG - chr3_4:62067188-62067207 None:intergenic 25.0%
! GTAAATTGAGTGAATAATTC+GGG - chr3_4:62067189-62067208 None:intergenic 25.0%
! ATATTATAGCTAGCTAAGTT+TGG - chr3_4:62067442-62067461 None:intergenic 25.0%
!!! TTATTAATTCTGAAATGCCA+GGG - chr3_4:62067669-62067688 None:intergenic 25.0%
!!! AACATGGCCATTAAATTTTT+TGG + chr3_4:62067939-62067958 Msa0512320:CDS 25.0%
! ATGAACAAAATCACCAATTA+TGG - chr3_4:62068056-62068075 None:intergenic 25.0%
! ACGACGATTTAAAAATATTC+AGG - chr3_4:62068134-62068153 None:intergenic 25.0%
! TAAAATCAATGGACATAACA+TGG - chr3_4:62068447-62068466 None:intergenic 25.0%
! TGAGAGTAAAGTAAAATCAA+TGG - chr3_4:62068458-62068477 None:intergenic 25.0%
! ATATCATTGTAAACCCAAAA+TGG - chr3_4:62068490-62068509 None:intergenic 25.0%
! TTGAAATTGATTGTTGAGTT+TGG + chr3_4:62068815-62068834 Msa0512320:three_prime_UTR 25.0%
!! AATGGATGTCAATTTTGTTA+TGG - chr3_4:62068908-62068927 None:intergenic 25.0%
!!! TTCAACGTCTAACTTTTTTT+TGG + chr3_4:62068993-62069012 Msa0512320:three_prime_UTR 25.0%
GAAGTTACAAGTTACAAGAT+TGG - chr3_4:62066381-62066400 None:intergenic 30.0%
! GCTTTCATTTTCATTACTAG+AGG - chr3_4:62066491-62066510 None:intergenic 30.0%
TTGAATTTGAAAGGAGATGA+TGG + chr3_4:62066839-62066858 Msa0512320:CDS 30.0%
!! AATGGTATATAATGGGTTTG+TGG + chr3_4:62066891-62066910 Msa0512320:CDS 30.0%
CATGCATATGCATATGAAAA+TGG - chr3_4:62066965-62066984 None:intergenic 30.0%
! ATGCATATGCATGCATTTTT+AGG + chr3_4:62066972-62066991 Msa0512320:intron 30.0%
AAATTGAGTGAATAATTCGG+GGG - chr3_4:62067187-62067206 None:intergenic 30.0%
CAACAATTCTGTTACAAAGA+TGG - chr3_4:62067223-62067242 None:intergenic 30.0%
!! AGTTATTTCTGTAGTGAAAG+AGG + chr3_4:62067263-62067282 Msa0512320:intron 30.0%
!!! TAACATTCGACCTTTGTTTT+AGG + chr3_4:62067560-62067579 Msa0512320:intron 30.0%
!!! AACATTCGACCTTTGTTTTA+GGG + chr3_4:62067561-62067580 Msa0512320:intron 30.0%
CTACAGAATGTAAAACTAAG+AGG - chr3_4:62067632-62067651 None:intergenic 30.0%
!!! TAGAGTTTTAACTTATACCC+TGG + chr3_4:62067649-62067668 Msa0512320:intron 30.0%
!! GTTATTAATTCTGAAATGCC+AGG - chr3_4:62067670-62067689 None:intergenic 30.0%
!!! TGACGATTTAGTTTTTGCAT+TGG + chr3_4:62067771-62067790 Msa0512320:intron 30.0%
CAACTTTACAATGTTAGGTT+GGG - chr3_4:62067998-62068017 None:intergenic 30.0%
ACAACTTTACAATGTTAGGT+TGG - chr3_4:62067999-62068018 None:intergenic 30.0%
TGCAACAACTTTACAATGTT+AGG - chr3_4:62068003-62068022 None:intergenic 30.0%
TACAACAGGAGGTTATTATT+AGG - chr3_4:62068086-62068105 None:intergenic 30.0%
GCAATATCTGATTCACAATA+AGG - chr3_4:62068171-62068190 None:intergenic 30.0%
! ATAATTTACGCTAGTTTAGC+CGG + chr3_4:62068211-62068230 Msa0512320:CDS 30.0%
! AACTCAGCTTTTCATATTGT+TGG + chr3_4:62068292-62068311 Msa0512320:intron 30.0%
CTTCTCTAATATTGTTACGA+TGG + chr3_4:62068363-62068382 Msa0512320:intron 30.0%
!! ACAGTTAACTTGCTAAAATC+TGG + chr3_4:62068404-62068423 Msa0512320:intron 30.0%
! TTTTACTTTACTCTCAACAC+TGG + chr3_4:62068462-62068481 Msa0512320:CDS 30.0%
ATGATATGACTGCTAGAAAA+TGG + chr3_4:62068503-62068522 Msa0512320:CDS 30.0%
TATATAGTATGATAGGGACT+AGG - chr3_4:62068581-62068600 None:intergenic 30.0%
TCAATATACAGGTTTGACAA+AGG + chr3_4:62068620-62068639 Msa0512320:intron 30.0%
AATTGATTGTTGAGTTTGGT+TGG + chr3_4:62068819-62068838 Msa0512320:three_prime_UTR 30.0%
ATTGATTGTTGAGTTTGGTT+GGG + chr3_4:62068820-62068839 Msa0512320:three_prime_UTR 30.0%
TCTGCAAAGATATGTCTAAA+TGG - chr3_4:62068926-62068945 None:intergenic 30.0%
TTCAACTTCAAATCGCACAA+GGG - chr3_4:62066324-62066343 None:intergenic 35.0%
TTTCAACTTCAAATCGCACA+AGG - chr3_4:62066325-62066344 None:intergenic 35.0%
GAAAGCAACAATAACAGTAG+TGG + chr3_4:62066430-62066449 Msa0512320:CDS 35.0%
TAGTATATATTACCGGTGTC+TGG - chr3_4:62066709-62066728 None:intergenic 35.0%
!! ATCAAGTGCTTGTTTCTGAA+TGG + chr3_4:62066873-62066892 Msa0512320:CDS 35.0%
AAAGGTCGAATGTTACATCT+TGG - chr3_4:62067555-62067574 None:intergenic 35.0%
TTGAACTGACCCTAAAACAA+AGG - chr3_4:62067573-62067592 None:intergenic 35.0%
GCAACATTGTTTACATAGCA+GGG - chr3_4:62067737-62067756 None:intergenic 35.0%
AGCAACATTGTTTACATAGC+AGG - chr3_4:62067738-62067757 None:intergenic 35.0%
AAAAATGAAGCAGACAGGAA+GGG - chr3_4:62067841-62067860 None:intergenic 35.0%
!! TTCCTGTCTGCTTCATTTTT+CGG + chr3_4:62067841-62067860 Msa0512320:CDS 35.0%
!!! TTCTTCCTTATTTTGTGCTC+TGG + chr3_4:62067878-62067897 Msa0512320:CDS 35.0%
AGTAAGAATGTGACTACAAC+AGG - chr3_4:62068100-62068119 None:intergenic 35.0%
GAATCAGATATTGCTTGCTT+CGG + chr3_4:62068177-62068196 Msa0512320:intron 35.0%
AATCAGATATTGCTTGCTTC+GGG + chr3_4:62068178-62068197 Msa0512320:intron 35.0%
! TAATTTACGCTAGTTTAGCC+GGG + chr3_4:62068212-62068231 Msa0512320:CDS 35.0%
! AGGAATTTTTCCAGTACTTC+AGG + chr3_4:62068248-62068267 Msa0512320:CDS 35.0%
! GGAATTTTTCCAGTACTTCA+GGG + chr3_4:62068249-62068268 Msa0512320:CDS 35.0%
GTAATGCTCGTTCAATATAC+AGG + chr3_4:62068609-62068628 Msa0512320:intron 35.0%
AGCAATGGTATCAATGAAAC+TGG - chr3_4:62068659-62068678 None:intergenic 35.0%
AGTTTCATTGATACCATTGC+TGG + chr3_4:62068658-62068677 Msa0512320:CDS 35.0%
GTTTCATTGATACCATTGCT+GGG + chr3_4:62068659-62068678 Msa0512320:CDS 35.0%
TTTCATTGATACCATTGCTG+GGG + chr3_4:62068660-62068679 Msa0512320:CDS 35.0%
CTGCTTTATACATTCTCCTA+CGG + chr3_4:62068684-62068703 Msa0512320:CDS 35.0%
GTGAATCCATCTGATACATA+CGG + chr3_4:62068754-62068773 Msa0512320:exon 35.0%
!! TGTTATGGACTAGTGAAAAG+TGG - chr3_4:62068893-62068912 None:intergenic 35.0%
! AAGGGGGGTGTAAATTACAA+TGG - chr3_4:62066306-62066325 None:intergenic 40.0%
TCAACTTCAAATCGCACAAG+GGG - chr3_4:62066323-62066342 None:intergenic 40.0%
AACAATAACAGTAGTGGCCT+CGG + chr3_4:62066436-62066455 Msa0512320:CDS 40.0%
TTGCTGCTACACCATCATTT+CGG + chr3_4:62066519-62066538 Msa0512320:CDS 40.0%
CTACTCTTTCTCCGAAATGA+TGG - chr3_4:62066533-62066552 None:intergenic 40.0%
GGTAACTTGACTCTCTTTGT+TGG - chr3_4:62066576-62066595 None:intergenic 40.0%
AGGAGGAAGGAAAAAGAGAT+TGG + chr3_4:62066615-62066634 Msa0512320:CDS 40.0%
! ATATTACCGGTGTCTGGTTT+GGG - chr3_4:62066703-62066722 None:intergenic 40.0%
TATATTACCGGTGTCTGGTT+TGG - chr3_4:62066704-62066723 None:intergenic 40.0%
AATGATTCTGTCTGTAGTCG+AGG + chr3_4:62066792-62066811 Msa0512320:intron 40.0%
ATGATTCTGTCTGTAGTCGA+GGG + chr3_4:62066793-62066812 Msa0512320:intron 40.0%
!! TATAATGGGTTTGTGGCCTT+TGG + chr3_4:62066898-62066917 Msa0512320:CDS 40.0%
AACAGCATGCTATACACCAA+AGG - chr3_4:62066917-62066936 None:intergenic 40.0%
! TCTAAGCTTCTGCTCTTTTG+TGG + chr3_4:62067019-62067038 Msa0512320:intron 40.0%
GTTACAGCTCTTAACTGACA+TGG + chr3_4:62067083-62067102 Msa0512320:intron 40.0%
ACCAATGTGATCGAAACGAA+GGG - chr3_4:62067491-62067510 None:intergenic 40.0%
TACCAATGTGATCGAAACGA+AGG - chr3_4:62067492-62067511 None:intergenic 40.0%
GTTCAATAGAGTTTCCACTC+AGG + chr3_4:62067587-62067606 Msa0512320:intron 40.0%
! TTGCCTACTTTGAGCTTTGT+GGG + chr3_4:62067692-62067711 Msa0512320:intron 40.0%
ATTCCCACAAAGCTCAAAGT+AGG - chr3_4:62067698-62067717 None:intergenic 40.0%
! ACTTTGAGCTTTGTGGGAAT+CGG + chr3_4:62067698-62067717 Msa0512320:intron 40.0%
CATTGTTTACATAGCAGGGT+CGG - chr3_4:62067733-62067752 None:intergenic 40.0%
CAAAAAGCAGTGTTCCTGTA+TGG + chr3_4:62067815-62067834 Msa0512320:CDS 40.0%
GAAAAATGAAGCAGACAGGA+AGG - chr3_4:62067842-62067861 None:intergenic 40.0%
GGTTTCCAGAGCACAAAATA+AGG - chr3_4:62067886-62067905 None:intergenic 40.0%
AAGAAGCAGAGCTCAAAACA+TGG + chr3_4:62067923-62067942 Msa0512320:CDS 40.0%
AAGAATGTGACTACAACAGG+AGG - chr3_4:62068097-62068116 None:intergenic 40.0%
ATCAGATATTGCTTGCTTCG+GGG + chr3_4:62068179-62068198 Msa0512320:intron 40.0%
! AATTTACGCTAGTTTAGCCG+GGG + chr3_4:62068213-62068232 Msa0512320:CDS 40.0%
ATTTGCTTTCCCTGAAGTAC+TGG - chr3_4:62068261-62068280 None:intergenic 40.0%
! AGCTTTTCATATTGTTGGCC+TGG + chr3_4:62068297-62068316 Msa0512320:intron 40.0%
ACAGGTTTGACAAAGGTTCT+TGG + chr3_4:62068627-62068646 Msa0512320:intron 40.0%
CGTAGGAGAATGTATAAAGC+AGG - chr3_4:62068686-62068705 None:intergenic 40.0%
GACATGCTATAGTTATGCTG+TGG - chr3_4:62068869-62068888 None:intergenic 40.0%
AGACGTTGAACTTCTCTTCA+AGG - chr3_4:62068983-62069002 None:intergenic 40.0%
AACTTCAAATCGCACAAGGG+GGG - chr3_4:62066321-62066340 None:intergenic 45.0%
CAACTTCAAATCGCACAAGG+GGG - chr3_4:62066322-62066341 None:intergenic 45.0%
ACAATAACAGTAGTGGCCTC+GGG + chr3_4:62066437-62066456 Msa0512320:CDS 45.0%
TAATCTGCAACAACATCCCG+AGG - chr3_4:62066456-62066475 None:intergenic 45.0%
TACCAACAACAGCAGTGTTG+TGG + chr3_4:62066592-62066611 Msa0512320:CDS 45.0%
! TATTACCGGTGTCTGGTTTG+GGG - chr3_4:62066702-62066721 None:intergenic 45.0%
! TGTTACTTCCCACTGGAAGA+AGG + chr3_4:62066933-62066952 Msa0512320:CDS 45.0%
GGGAAATACCTTCTTCCAGT+GGG - chr3_4:62066944-62066963 None:intergenic 45.0%
TGGGAAATACCTTCTTCCAG+TGG - chr3_4:62066945-62066964 None:intergenic 45.0%
AATGTGATCGAAACGAAGGG+TGG - chr3_4:62067488-62067507 None:intergenic 45.0%
ACCCTTCGTTTCGATCACAT+TGG + chr3_4:62067487-62067506 Msa0512320:intron 45.0%
CTTGCCTACTTTGAGCTTTG+TGG + chr3_4:62067691-62067710 Msa0512320:intron 45.0%
!!! GAACACTGCTTTTTGAGCTG+TGG - chr3_4:62067810-62067829 None:intergenic 45.0%
CACCGAAAAATGAAGCAGAC+AGG - chr3_4:62067846-62067865 None:intergenic 45.0%
!! CTGTCTGCTTCATTTTTCGG+TGG + chr3_4:62067844-62067863 Msa0512320:CDS 45.0%
GGAATCAAAAGTCGCTGCAA+CGG + chr3_4:62067960-62067979 Msa0512320:CDS 45.0%
ATATTGCTTGCTTCGGGGAT+AGG + chr3_4:62068184-62068203 Msa0512320:CDS 45.0%
AATGAATACAAGGACGAGCC+AGG - chr3_4:62068318-62068337 None:intergenic 45.0%
! TCTCAACACTGGCACCATTT+TGG + chr3_4:62068473-62068492 Msa0512320:CDS 45.0%
! CTCAACACTGGCACCATTTT+GGG + chr3_4:62068474-62068493 Msa0512320:CDS 45.0%
!! ATGGCAGAGGTTGATAGTGA+GGG - chr3_4:62068710-62068729 None:intergenic 45.0%
!! AATGGCAGAGGTTGATAGTG+AGG - chr3_4:62068711-62068730 None:intergenic 45.0%
CTCAACAGGAGTTTGTGCAA+TGG - chr3_4:62068729-62068748 None:intergenic 45.0%
TGCACAAACTCCTGTTGAGT+CGG + chr3_4:62068730-62068749 Msa0512320:CDS 45.0%
CATTGGCCGTATGTATCAGA+TGG - chr3_4:62068763-62068782 None:intergenic 45.0%
GATGGTGTAGCAGCAACAGA+GGG - chr3_4:62066515-62066534 None:intergenic 50.0%
! TGATGGTGTAGCAGCAACAG+AGG - chr3_4:62066516-62066535 None:intergenic 50.0%
CTCCACAACACTGCTGTTGT+TGG - chr3_4:62066597-62066616 None:intergenic 50.0%
CAACAACAGCAGTGTTGTGG+AGG + chr3_4:62066595-62066614 Msa0512320:CDS 50.0%
! AGCATGCTGTTACTTCCCAC+TGG + chr3_4:62066926-62066945 Msa0512320:CDS 50.0%
TTGAGCTCTGCTTCTTCGAC+AGG - chr3_4:62067919-62067938 None:intergenic 50.0%
TTCCTTCCACACATCTTCCC+CGG - chr3_4:62068233-62068252 None:intergenic 50.0%
TATAAAGCAGGCCCCAGCAA+TGG - chr3_4:62068674-62068693 None:intergenic 50.0%
AGGAGTTTGTGCAATGGCAG+AGG - chr3_4:62068723-62068742 None:intergenic 50.0%
TGGATTCACTCCGACTCAAC+AGG - chr3_4:62068743-62068762 None:intergenic 50.0%
CAACAGCAGTGTTGTGGAGG+AGG + chr3_4:62066598-62066617 Msa0512320:CDS 55.0%
AGCAGTGTTGTGGAGGAGGA+AGG + chr3_4:62066602-62066621 Msa0512320:CDS 55.0%
TCTCTCCCCAAACCAGACAC+CGG + chr3_4:62066694-62066713 Msa0512320:CDS 55.0%
ACGAAGGGTGGCATCATGCA+TGG - chr3_4:62067476-62067495 None:intergenic 55.0%
TCTGCTTCTTCGACAGGAGG+CGG - chr3_4:62067913-62067932 None:intergenic 55.0%
AGCTCTGCTTCTTCGACAGG+AGG - chr3_4:62067916-62067935 None:intergenic 55.0%
GTTTAGCCGGGGAAGATGTG+TGG + chr3_4:62068224-62068243 Msa0512320:CDS 55.0%
!! AGGTTGATAGTGAGGGCCGT+AGG - chr3_4:62068703-62068722 None:intergenic 55.0%
GCAGACAGGAAGGGCCATAC+AGG - chr3_4:62067832-62067851 None:intergenic 60.0%
AGCCGGGGAAGATGTGTGGA+AGG + chr3_4:62068228-62068247 Msa0512320:CDS 60.0%
TCTTCGACAGGAGGCGGTGG+AGG - chr3_4:62067907-62067926 None:intergenic 65.0%
GCTTCTTCGACAGGAGGCGG+TGG - chr3_4:62067910-62067929 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 62066211 62069019 62066211 ID=Msa0512320;Name=Msa0512320
chr3_4 mRNA 62066211 62069019 62066211 ID=Msa0512320-mRNA-1;Parent=Msa0512320;Name=Msa0512320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=145|1|1|1|1|1|6|262|327
chr3_4 exon 62066211 62066715 62066211 ID=Msa0512320-mRNA-1:exon:15276;Parent=Msa0512320-mRNA-1
chr3_4 exon 62066809 62066954 62066809 ID=Msa0512320-mRNA-1:exon:15277;Parent=Msa0512320-mRNA-1
chr3_4 exon 62067813 62067981 62067813 ID=Msa0512320-mRNA-1:exon:15278;Parent=Msa0512320-mRNA-1
chr3_4 exon 62068184 62068282 62068184 ID=Msa0512320-mRNA-1:exon:15279;Parent=Msa0512320-mRNA-1
chr3_4 exon 62068442 62068524 62068442 ID=Msa0512320-mRNA-1:exon:15280;Parent=Msa0512320-mRNA-1
chr3_4 exon 62068631 62069019 62068631 ID=Msa0512320-mRNA-1:exon:15281;Parent=Msa0512320-mRNA-1
chr3_4 five_prime_UTR 62066211 62066355 62066211 ID=Msa0512320-mRNA-1:five_prime_utr;Parent=Msa0512320-mRNA-1
chr3_4 CDS 62066356 62066715 62066356 ID=Msa0512320-mRNA-1:cds;Parent=Msa0512320-mRNA-1
chr3_4 CDS 62066809 62066954 62066809 ID=Msa0512320-mRNA-1:cds;Parent=Msa0512320-mRNA-1
chr3_4 CDS 62067813 62067981 62067813 ID=Msa0512320-mRNA-1:cds;Parent=Msa0512320-mRNA-1
chr3_4 CDS 62068184 62068282 62068184 ID=Msa0512320-mRNA-1:cds;Parent=Msa0512320-mRNA-1
chr3_4 CDS 62068442 62068524 62068442 ID=Msa0512320-mRNA-1:cds;Parent=Msa0512320-mRNA-1
chr3_4 CDS 62068631 62068757 62068631 ID=Msa0512320-mRNA-1:cds;Parent=Msa0512320-mRNA-1
chr3_4 three_prime_UTR 62068758 62069019 62068758 ID=Msa0512320-mRNA-1:three_prime_utr;Parent=Msa0512320-mRNA-1
Gene Sequence

>Msa0512320

ATGGTGCTAGTTGTAGCTAAACCCAATCTTGTAACTTGTAACTTCCCCACTCTGAAATACAAAAAATCAATTCAGAAAGCAACAATAACAGTAGTGGCCTCGGGATGTTGTTGCAGATTAAGCTCATTCACACCTCTAGTAATGAAAATGAAAGCTCCCTCTGTTGCTGCTACACCATCATTTCGGAGAAAGAGTAGTATTGTTGTTTGCAATGATTCCAACAAAGAGAGTCAAGTTACCAACAACAGCAGTGTTGTGGAGGAGGAAGGAAAAAGAGATTGGACAACTTCAATTTTACTCTTTCTCTTATGGGCTGCACTTATCTACTATGTTTCTTTTCTCTCCCCAAACCAGACACCGTCGAGGGACATGTATTTCTTGAAAAAGCTTTTGAATTTGAAAGGAGATGATGGTTTCAGAATGAATCAAGTGCTTGTTTCTGAATGGTATATAATGGGTTTGTGGCCTTTGGTGTATAGCATGCTGTTACTTCCCACTGGAAGAAGCTCAAAAAGCAGTGTTCCTGTATGGCCCTTCCTGTCTGCTTCATTTTTCGGTGGCATATATGCACTTCTTCCTTATTTTGTGCTCTGGAAACCTCCACCGCCTCCTGTCGAAGAAGCAGAGCTCAAAACATGGCCATTAAATTTTTTGGAATCAAAAGTCGCTGCAACGATATTGCTTGCTTCGGGGATAGGCATCATAATTTACGCTAGTTTAGCCGGGGAAGATGTGTGGAAGGAATTTTTCCAGTACTTCAGGGAAAGCAAATTTATCCATGTTATGTCCATTGATTTTACTTTACTCTCAACACTGGCACCATTTTGGGTTTACAATGATATGACTGCTAGAAAATGGTTTGACAAAGGTTCTTGGCTTCTTCCAGTTTCATTGATACCATTGCTGGGGCCTGCTTTATACATTCTCCTACGGCCCTCACTATCAACCTCTGCCATTGCACAAACTCCTGTTGAGTCGGAGTGA

Protein sequence

>Msa0512320

MVLVVAKPNLVTCNFPTLKYKKSIQKATITVVASGCCCRLSSFTPLVMKMKAPSVAATPSFRRKSSIVVCNDSNKESQVTNNSSVVEEEGKRDWTTSILLFLLWAALIYYVSFLSPNQTPSRDMYFLKKLLNLKGDDGFRMNQVLVSEWYIMGLWPLVYSMLLLPTGRSSKSSVPVWPFLSASFFGGIYALLPYFVLWKPPPPPVEEAELKTWPLNFLESKVAATILLASGIGIIIYASLAGEDVWKEFFQYFRESKFIHVMSIDFTLLSTLAPFWVYNDMTARKWFDKGSWLLPVSLIPLLGPALYILLRPSLSTSAIAQTPVESE*