Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372980 | XP_024632360.1 | 78.873 | 284 | 19 | 6 | 1 | 269 | 1 | 258 | 1.44e-144 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372980 | A0A072VBD4 | 78.873 | 284 | 19 | 6 | 1 | 269 | 1 | 258 | 6.88e-145 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1372980 | 0.809103 | 2.232022e-50 | -8.615850e-47 |
| Msa0006070 | Msa1372980 | 0.807175 | 5.746342e-50 | -8.615850e-47 |
| Msa0006110 | Msa1372980 | 0.808266 | 3.370641e-50 | -8.615850e-47 |
| Msa0011170 | Msa1372980 | 0.810123 | 1.347596e-50 | -8.615850e-47 |
| Msa0014710 | Msa1372980 | 0.815698 | 8.089824e-52 | -8.615850e-47 |
| Msa0017510 | Msa1372980 | 0.809106 | 2.228864e-50 | -8.615850e-47 |
| Msa0028640 | Msa1372980 | 0.805017 | 1.635413e-49 | -8.615850e-47 |
| Msa0036140 | Msa1372980 | 0.816796 | 4.596926e-52 | -8.615850e-47 |
| Msa0045790 | Msa1372980 | 0.801568 | 8.469968e-49 | -8.615850e-47 |
| Msa0046160 | Msa1372980 | 0.802049 | 6.744467e-49 | -8.615850e-47 |
| Msa0054480 | Msa1372980 | 0.823200 | 1.574492e-53 | -8.615850e-47 |
| Msa0078900 | Msa1372980 | 0.803988 | 2.680373e-49 | -8.615850e-47 |
| Msa0084380 | Msa1372980 | 0.810675 | 1.024340e-50 | -8.615850e-47 |
| Msa0090360 | Msa1372980 | 0.805109 | 1.564163e-49 | -8.615850e-47 |
| Msa0091210 | Msa1372980 | -0.800038 | 1.738605e-48 | -8.615850e-47 |
| Msa0095560 | Msa1372980 | 0.810520 | 1.106752e-50 | -8.615850e-47 |
| Msa0112750 | Msa1372980 | 0.826178 | 3.128580e-54 | -8.615850e-47 |
| Msa0114060 | Msa1372980 | 0.802076 | 6.659526e-49 | -8.615850e-47 |
| Msa1353470 | Msa1372980 | 0.804543 | 2.054417e-49 | -8.615850e-47 |
| Msa1353980 | Msa1372980 | 0.818204 | 2.214150e-52 | -8.615850e-47 |
| Msa1359040 | Msa1372980 | 0.818702 | 1.707549e-52 | -8.615850e-47 |
| Msa1372760 | Msa1372980 | 0.808022 | 3.798400e-50 | -8.615850e-47 |
| Msa1372980 | Msa1373010 | 0.937191 | 5.169254e-98 | -8.615850e-47 |
| Msa1372980 | Msa1373030 | 0.926550 | 4.019023e-91 | -8.615850e-47 |
| Msa1372980 | Msa1392240 | 0.810270 | 1.252918e-50 | -8.615850e-47 |
| Msa1372980 | Msa1392260 | 0.820689 | 6.007804e-53 | -8.615850e-47 |
| Msa1372980 | Msa1397860 | 0.803946 | 2.734468e-49 | -8.615850e-47 |
| Msa1372980 | Msa1412640 | 0.803640 | 3.164954e-49 | -8.615850e-47 |
| Msa1372980 | Msa1415910 | 0.811869 | 5.641984e-51 | -8.615850e-47 |
| Msa1372980 | Msa1420820 | 0.802875 | 4.557320e-49 | -8.615850e-47 |
| Msa1372980 | Msa1424450 | 0.807070 | 6.048575e-50 | -8.615850e-47 |
| Msa1372980 | Msa1429900 | 0.814744 | 1.318039e-51 | -8.615850e-47 |
| Msa1372980 | Msa1438250 | 0.818725 | 1.687383e-52 | -8.615850e-47 |
| Msa1372980 | Msa1440560 | 0.817024 | 4.087114e-52 | -8.615850e-47 |
| Msa1372980 | Msa1452240 | 0.814736 | 1.323276e-51 | -8.615850e-47 |
| Msa1372980 | Msa1463670 | 0.806949 | 6.416146e-50 | -8.615850e-47 |
| Msa1372980 | Msa1466540 | 0.839878 | 1.217179e-57 | -8.615850e-47 |
| Msa0610430 | Msa1372980 | 0.813405 | 2.602866e-51 | -8.615850e-47 |
| Msa0611800 | Msa1372980 | 0.808756 | 2.649141e-50 | -8.615850e-47 |
| Msa0613440 | Msa1372980 | 0.804684 | 1.919737e-49 | -8.615850e-47 |
| Msa0617640 | Msa1372980 | 0.807907 | 4.019037e-50 | -8.615850e-47 |
| Msa0625720 | Msa1372980 | 0.828887 | 7.001281e-55 | -8.615850e-47 |
| Msa0626090 | Msa1372980 | 0.808476 | 3.040129e-50 | -8.615850e-47 |
| Msa0627450 | Msa1372980 | 0.800315 | 1.526439e-48 | -8.615850e-47 |
| Msa0657970 | Msa1372980 | 0.832012 | 1.205286e-55 | -8.615850e-47 |
| Msa0661650 | Msa1372980 | 0.825494 | 4.545884e-54 | -8.615850e-47 |
| Msa0663390 | Msa1372980 | 0.834672 | 2.617108e-56 | -8.615850e-47 |
| Msa0663810 | Msa1372980 | 0.817040 | 4.052199e-52 | -8.615850e-47 |
| Msa0673460 | Msa1372980 | 0.814158 | 1.776463e-51 | -8.615850e-47 |
| Msa0681250 | Msa1372980 | 0.802043 | 6.765869e-49 | -8.615850e-47 |
| Msa0681270 | Msa1372980 | 0.818251 | 2.160750e-52 | -8.615850e-47 |
| Msa0688270 | Msa1372980 | 0.817727 | 2.837706e-52 | -8.615850e-47 |
| Msa0693380 | Msa1372980 | 0.800253 | 1.572133e-48 | -8.615850e-47 |
| Msa0696640 | Msa1372980 | 0.800683 | 1.284484e-48 | -8.615850e-47 |
| Msa0697060 | Msa1372980 | 0.828864 | 7.092685e-55 | -8.615850e-47 |
| Msa0701830 | Msa1372980 | 0.807424 | 5.088327e-50 | -8.615850e-47 |
| Msa0703360 | Msa1372980 | 0.804036 | 2.619640e-49 | -8.615850e-47 |
| Msa0711830 | Msa1372980 | 0.806202 | 9.226006e-50 | -8.615850e-47 |
| Msa0724210 | Msa1372980 | 0.810636 | 1.044578e-50 | -8.615850e-47 |
| Msa0727710 | Msa1372980 | 0.810890 | 9.202909e-51 | -8.615850e-47 |
| Msa0731940 | Msa1372980 | 0.827308 | 1.680373e-54 | -8.615850e-47 |
| Msa0745790 | Msa1372980 | 0.812033 | 5.197494e-51 | -8.615850e-47 |
| Msa0750240 | Msa1372980 | 0.801363 | 9.327753e-49 | -8.615850e-47 |
| Msa0759410 | Msa1372980 | 0.818500 | 1.898023e-52 | -8.615850e-47 |
| Msa0760130 | Msa1372980 | 0.814506 | 1.488211e-51 | -8.615850e-47 |
| Msa0762970 | Msa1372980 | 0.816686 | 4.865155e-52 | -8.615850e-47 |
| Msa0766630 | Msa1372980 | 0.834268 | 3.307493e-56 | -8.615850e-47 |
| Msa0768310 | Msa1372980 | 0.806511 | 7.938199e-50 | -8.615850e-47 |
| Msa0777790 | Msa1372980 | 0.801402 | 9.159759e-49 | -8.615850e-47 |
| Msa0779320 | Msa1372980 | 0.805094 | 1.575391e-49 | -8.615850e-47 |
| Msa0790510 | Msa1372980 | 0.806009 | 1.012902e-49 | -8.615850e-47 |
| Msa0796700 | Msa1372980 | 0.811915 | 5.512170e-51 | -8.615850e-47 |
| Msa0806090 | Msa1372980 | 0.800410 | 1.459942e-48 | -8.615850e-47 |
| Msa0810220 | Msa1372980 | 0.824242 | 8.973901e-54 | -8.615850e-47 |
| Msa0811080 | Msa1372980 | 0.800707 | 1.269990e-48 | -8.615850e-47 |
| Msa0816710 | Msa1372980 | 0.803697 | 3.080649e-49 | -8.615850e-47 |
| Msa0820770 | Msa1372980 | 0.810228 | 1.279539e-50 | -8.615850e-47 |
| Msa0820850 | Msa1372980 | 0.813695 | 2.246646e-51 | -8.615850e-47 |
| Msa0832340 | Msa1372980 | 0.811366 | 7.258536e-51 | -8.615850e-47 |
| Msa0840820 | Msa1372980 | 0.815578 | 8.602373e-52 | -8.615850e-47 |
| Msa0142220 | Msa1372980 | 0.805882 | 1.077150e-49 | -8.615850e-47 |
| Msa0157290 | Msa1372980 | 0.807227 | 5.602109e-50 | -8.615850e-47 |
| Msa0161900 | Msa1372980 | 0.809205 | 2.123294e-50 | -8.615850e-47 |
| Msa0178930 | Msa1372980 | 0.817597 | 3.036939e-52 | -8.615850e-47 |
| Msa0188830 | Msa1372980 | 0.814830 | 1.261664e-51 | -8.615850e-47 |
| Msa0197660 | Msa1372980 | 0.800094 | 1.693552e-48 | -8.615850e-47 |
| Msa0205510 | Msa1372980 | 0.800395 | 1.470750e-48 | -8.615850e-47 |
| Msa0218240 | Msa1372980 | 0.829779 | 4.252625e-55 | -8.615850e-47 |
| Msa0218270 | Msa1372980 | 0.835122 | 2.016003e-56 | -8.615850e-47 |
| Msa1251910 | Msa1372980 | 0.820294 | 7.401246e-53 | -8.615850e-47 |
| Msa1282580 | Msa1372980 | -0.801974 | 6.988039e-49 | -8.615850e-47 |
| Msa1284680 | Msa1372980 | 0.806210 | 9.190235e-50 | -8.615850e-47 |
| Msa1305190 | Msa1372980 | 0.801119 | 1.046657e-48 | -8.615850e-47 |
| Msa1305340 | Msa1372980 | 0.819586 | 1.074455e-52 | -8.615850e-47 |
| Msa1308870 | Msa1372980 | 0.805137 | 1.543119e-49 | -8.615850e-47 |
| Msa1309030 | Msa1372980 | 0.816224 | 6.174861e-52 | -8.615850e-47 |
| Msa1331000 | Msa1372980 | 0.812023 | 5.222733e-51 | -8.615850e-47 |
| Msa0385840 | Msa1372980 | 0.807284 | 5.449055e-50 | -8.615850e-47 |
| Msa0402290 | Msa1372980 | 0.817456 | 3.266564e-52 | -8.615850e-47 |
| Msa0432300 | Msa1372980 | 0.806225 | 9.123654e-50 | -8.615850e-47 |
| Msa0437560 | Msa1372980 | 0.814616 | 1.407118e-51 | -8.615850e-47 |
| Msa0440400 | Msa1372980 | 0.811455 | 6.940386e-51 | -8.615850e-47 |
| Msa0440750 | Msa1372980 | 0.807729 | 4.385268e-50 | -8.615850e-47 |
| Msa0443260 | Msa1372980 | 0.800230 | 1.588936e-48 | -8.615850e-47 |
| Msa0452620 | Msa1372980 | 0.801068 | 1.072063e-48 | -8.615850e-47 |
| Msa0458090 | Msa1372980 | 0.800343 | 1.506955e-48 | -8.615850e-47 |
| Msa0464100 | Msa1372980 | 0.803662 | 3.131821e-49 | -8.615850e-47 |
| Msa0481530 | Msa1372980 | 0.830331 | 3.118158e-55 | -8.615850e-47 |
| Msa1014540 | Msa1372980 | 0.821765 | 3.393514e-53 | -8.615850e-47 |
| Msa1023950 | Msa1372980 | 0.806704 | 7.229687e-50 | -8.615850e-47 |
| Msa1030970 | Msa1372980 | 0.806904 | 6.558113e-50 | -8.615850e-47 |
| Msa1035480 | Msa1372980 | 0.813893 | 2.032594e-51 | -8.615850e-47 |
| Msa1061680 | Msa1372980 | 0.803162 | 3.976463e-49 | -8.615850e-47 |
| Msa1075540 | Msa1372980 | 0.837976 | 3.782869e-57 | -8.615850e-47 |
| Msa1075650 | Msa1372980 | 0.815701 | 8.077493e-52 | -8.615850e-47 |
| Msa1082500 | Msa1372980 | 0.847595 | 1.046829e-59 | -8.615850e-47 |
| Msa1083840 | Msa1372980 | 0.802602 | 5.189332e-49 | -8.615850e-47 |
| Msa1098400 | Msa1372980 | 0.818042 | 2.409423e-52 | -8.615850e-47 |
| Msa1100050 | Msa1372980 | 0.801335 | 9.453712e-49 | -8.615850e-47 |
| Msa0267370 | Msa1372980 | 0.803377 | 3.588482e-49 | -8.615850e-47 |
| Msa0270100 | Msa1372980 | 0.802740 | 4.860322e-49 | -8.615850e-47 |
| Msa0280090 | Msa1372980 | 0.815213 | 1.037145e-51 | -8.615850e-47 |
| Msa0287410 | Msa1372980 | 0.802289 | 6.020073e-49 | -8.615850e-47 |
| Msa0288100 | Msa1372980 | 0.807131 | 5.872399e-50 | -8.615850e-47 |
| Msa0297050 | Msa1372980 | 0.905918 | 2.580493e-80 | -8.615850e-47 |
| Msa0309770 | Msa1372980 | 0.812542 | 4.022803e-51 | -8.615850e-47 |
| Msa0326110 | Msa1372980 | 0.800987 | 1.113758e-48 | -8.615850e-47 |
| Msa0326940 | Msa1372980 | 0.800467 | 1.421855e-48 | -8.615850e-47 |
| Msa0341540 | Msa1372980 | 0.801101 | 1.055246e-48 | -8.615850e-47 |
| Msa0345970 | Msa1372980 | 0.807400 | 5.150336e-50 | -8.615850e-47 |
| Msa0355220 | Msa1372980 | 0.806663 | 7.375667e-50 | -8.615850e-47 |
| Msa0363360 | Msa1372980 | 0.805394 | 1.363540e-49 | -8.615850e-47 |
| Msa0363680 | Msa1372980 | 0.806328 | 8.677326e-50 | -8.615850e-47 |
| Msa1113170 | Msa1372980 | 0.805519 | 1.283532e-49 | -8.615850e-47 |
| Msa1121490 | Msa1372980 | 0.806000 | 1.017021e-49 | -8.615850e-47 |
| Msa1131220 | Msa1372980 | 0.816962 | 4.219261e-52 | -8.615850e-47 |
| Msa1154280 | Msa1372980 | 0.815541 | 8.768728e-52 | -8.615850e-47 |
| Msa1162780 | Msa1372980 | 0.806886 | 6.617180e-50 | -8.615850e-47 |
| Msa0484780 | Msa1372980 | 0.826482 | 2.647674e-54 | -8.615850e-47 |
| Msa0512900 | Msa1372980 | 0.828843 | 7.177892e-55 | -8.615850e-47 |
| Msa0529890 | Msa1372980 | 0.829878 | 4.023641e-55 | -8.615850e-47 |
| Msa0532350 | Msa1372980 | 0.805199 | 1.498199e-49 | -8.615850e-47 |
| Msa0534910 | Msa1372980 | 0.800899 | 1.160482e-48 | -8.615850e-47 |
| Msa0585560 | Msa1372980 | 0.836827 | 7.446137e-57 | -8.615850e-47 |
| Msa0861090 | Msa1372980 | 0.800871 | 1.175814e-48 | -8.615850e-47 |
| Msa0861130 | Msa1372980 | 0.814507 | 1.487308e-51 | -8.615850e-47 |
| Msa0880140 | Msa1372980 | 0.804659 | 1.942647e-49 | -8.615850e-47 |
| Msa0898750 | Msa1372980 | 0.805752 | 1.147193e-49 | -8.615850e-47 |
| Msa0928130 | Msa1372980 | 0.800575 | 1.351188e-48 | -8.615850e-47 |
| Msa0947660 | Msa1372980 | 0.826733 | 2.307268e-54 | -8.615850e-47 |
| Msa0969520 | Msa1372980 | 0.814716 | 1.336915e-51 | -8.615850e-47 |
| Msa0974070 | Msa1372980 | 0.814611 | 1.410438e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372980 | MtrunA17_Chr2g0320431 | 78.873 | 284 | 19 | 6 | 1 | 269 | 1 | 258 | 1.32e-148 | 416 |
| Msa1372980 | MtrunA17_Chr2g0320451 | 85.542 | 166 | 11 | 1 | 19 | 184 | 220 | 372 | 5.84e-90 | 287 |
| Msa1372980 | MtrunA17_Chr2g0314231 | 77.465 | 142 | 31 | 1 | 19 | 160 | 4 | 144 | 1.22e-74 | 224 |
| Msa1372980 | MtrunA17_Chr2g0314241 | 60.839 | 143 | 14 | 1 | 19 | 161 | 54 | 154 | 2.56e-51 | 165 |
| Msa1372980 | MtrunA17_Chr2g0320401 | 91.176 | 68 | 6 | 0 | 13 | 80 | 41 | 108 | 6.09e-38 | 129 |
| Msa1372980 | MtrunA17_Chr3g0079841 | 78.571 | 56 | 12 | 0 | 214 | 269 | 156 | 211 | 2.03e-21 | 90.9 |
| Msa1372980 | MtrunA17_Chr7g0265211 | 34.783 | 138 | 73 | 2 | 29 | 166 | 252 | 372 | 2.31e-17 | 81.6 |
| Msa1372980 | MtrunA17_Chr1g0179841 | 31.447 | 159 | 93 | 3 | 22 | 180 | 93 | 235 | 4.22e-17 | 80.9 |
| Msa1372980 | MtrunA17_Chr1g0182221 | 32.558 | 129 | 69 | 2 | 18 | 146 | 394 | 504 | 1.54e-14 | 73.2 |
| Msa1372980 | MtrunA17_Chr7g0222931 | 34.091 | 132 | 69 | 2 | 15 | 146 | 394 | 507 | 1.81e-14 | 72.8 |
| Msa1372980 | MtrunA17_Chr1g0182481 | 30.556 | 144 | 80 | 3 | 25 | 168 | 254 | 377 | 1.25e-12 | 67.8 |
| Msa1372980 | MtrunA17_Chr4g0030901 | 30.328 | 122 | 66 | 2 | 25 | 146 | 318 | 420 | 1.27e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372980 | AT2G27980.1 | 46.369 | 179 | 78 | 3 | 18 | 192 | 366 | 530 | 2.03e-40 | 149 |
| Msa1372980 | AT2G36720.1 | 29.688 | 192 | 114 | 3 | 29 | 215 | 264 | 439 | 3.14e-18 | 84.7 |
| Msa1372980 | AT2G36720.2 | 29.688 | 192 | 114 | 3 | 29 | 215 | 264 | 439 | 3.14e-18 | 84.7 |
| Msa1372980 | AT3G53680.1 | 35.246 | 122 | 61 | 2 | 25 | 146 | 182 | 285 | 4.01e-15 | 75.5 |
| Msa1372980 | AT3G53680.2 | 35.246 | 122 | 61 | 2 | 25 | 146 | 182 | 285 | 4.16e-15 | 75.5 |
| Msa1372980 | AT5G13660.1 | 33.333 | 141 | 75 | 3 | 15 | 154 | 388 | 510 | 5.38e-15 | 75.1 |
| Msa1372980 | AT5G13660.2 | 32.624 | 141 | 77 | 3 | 15 | 154 | 388 | 511 | 1.37e-14 | 73.6 |
| Msa1372980 | AT5G59830.3 | 31.967 | 122 | 64 | 2 | 25 | 146 | 290 | 392 | 1.39e-13 | 70.5 |
| Msa1372980 | AT5G59830.1 | 31.967 | 122 | 64 | 2 | 25 | 146 | 290 | 392 | 1.39e-13 | 70.5 |
| Msa1372980 | AT5G59830.2 | 31.967 | 122 | 64 | 2 | 25 | 146 | 290 | 392 | 1.39e-13 | 70.5 |
| Msa1372980 | AT2G37520.1 | 31.356 | 118 | 63 | 2 | 29 | 146 | 176 | 275 | 6.39e-12 | 65.9 |
Find 66 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCAACTGGGATTC+TGG | 0.215141 | tig0019325:-132528 | Msa1372980:CDS |
| AGAGGATGCGCTCTTGGTTT+TGG | 0.248738 | tig0019325:-131758 | Msa1372980:CDS |
| TAATCCGGAGGACGTTTATT+AGG | 0.284155 | tig0019325:+132115 | None:intergenic |
| CAAGGTGTGATCAAAGATTC+AGG | 0.310758 | tig0019325:-132318 | Msa1372980:CDS |
| CAGAACCTCCCTTCATTGTT+TGG | 0.331569 | tig0019325:+132579 | None:intergenic |
| CTGAAGGATCTTCTTGCAAC+TGG | 0.339199 | tig0019325:-132536 | Msa1372980:CDS |
| TGATGTGTAGGCGCGTAAAC+CGG | 0.346747 | tig0019325:-132355 | Msa1372980:intron |
| CAAACAATGAAGGGAGGTTC+TGG | 0.363982 | tig0019325:-132578 | Msa1372980:CDS |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.366436 | tig0019325:+130833 | None:intergenic |
| TGGGAGTTGTAATGGGAATC+AGG | 0.381607 | tig0019325:-132280 | Msa1372980:CDS |
| ATGGGAATCAGGCAAGTAAA+TGG | 0.387841 | tig0019325:-132269 | Msa1372980:CDS |
| TGAAATCACCCAGGACCATT+TGG | 0.397269 | tig0019325:+132008 | None:intergenic |
| TGAGAATGGAAAACTCCTTC+GGG | 0.415866 | tig0019325:-132083 | Msa1372980:CDS |
| GATTATACTTACCTTGAGAA+TGG | 0.429569 | tig0019325:-132097 | Msa1372980:CDS |
| TGAAGGGAGGTTCTGGTAAG+AGG | 0.433057 | tig0019325:-132571 | Msa1372980:CDS |
| AAAAGAAGAGGATGCGCTCT+TGG | 0.439362 | tig0019325:-131764 | Msa1372980:CDS |
| ACTTCTTCCAAGAAAATAAG+AGG | 0.454192 | tig0019325:-131683 | Msa1372980:intron |
| TTGAGAATGGAAAACTCCTT+CGG | 0.454228 | tig0019325:-132084 | Msa1372980:CDS |
| GGCGCGTAAACCGGGAGAAA+AGG | 0.458730 | tig0019325:-132346 | Msa1372980:CDS |
| GATGTGTAGGCGCGTAAACC+GGG | 0.460301 | tig0019325:-132354 | Msa1372980:intron |
| ATCCAACGGAAGACTTGAAC+AGG | 0.468127 | tig0019325:+132048 | None:intergenic |
| GTCTCTTTCAACTCCATGCA+TGG | 0.468548 | tig0019325:+131809 | None:intergenic |
| ATATATAGTCACGGTGGACC+TGG | 0.469482 | tig0019325:-130765 | Msa1372980:CDS |
| TAAAGAGGTCCAAATGGTCC+TGG | 0.476200 | tig0019325:-132017 | Msa1372980:CDS |
| CTTGCAACTGGGATTCTGGA+GGG | 0.487680 | tig0019325:-132524 | Msa1372980:CDS |
| TTCTTGTGACCAAACAATGA+AGG | 0.488888 | tig0019325:-132588 | Msa1372980:CDS |
| TCAGTGCATGGAACAATTGA+CGG | 0.496206 | tig0019325:-130803 | Msa1372980:CDS |
| GTTGGATACATTGGATAAAG+AGG | 0.497086 | tig0019325:-132032 | Msa1372980:CDS |
| AAGTCTTCCGTTGGATACAT+TGG | 0.504489 | tig0019325:-132041 | Msa1372980:CDS |
| TTCTCAAGGTAAGTATAATC+CGG | 0.505601 | tig0019325:+132100 | None:intergenic |
| ATTGGATAAAGAGGTCCAAA+TGG | 0.516952 | tig0019325:-132023 | Msa1372980:CDS |
| TAGTCCTAATAAACGTCCTC+CGG | 0.530968 | tig0019325:-132119 | Msa1372980:CDS |
| TGCCTGTTCAAGTCTTCCGT+TGG | 0.532331 | tig0019325:-132050 | Msa1372980:CDS |
| AATATATGTTTCAACTGCAG+AGG | 0.546957 | tig0019325:-131971 | Msa1372980:intron |
| GAGGTTTCTTGTCAAACTGA+AGG | 0.556626 | tig0019325:-132552 | Msa1372980:CDS |
| TGAAGGATCTTCTTGCAACT+GGG | 0.565068 | tig0019325:-132535 | Msa1372980:CDS |
| ATTGAAAGTGAGATATGTCA+AGG | 0.573844 | tig0019325:-132501 | Msa1372980:CDS |
| GAAGAACCGAGTGTCTGTGC+TGG | 0.576107 | tig0019325:+130824 | None:intergenic |
| TCTTGTGACCAAACAATGAA+GGG | 0.576525 | tig0019325:-132587 | Msa1372980:CDS |
| GTCAATTACTGAATCTAACA+AGG | 0.580889 | tig0019325:-131855 | Msa1372980:CDS |
| CAGTGCATGGAACAATTGAC+GGG | 0.580953 | tig0019325:-130802 | Msa1372980:CDS |
| GAGTTGAAAGAGACTTCTGC+AGG | 0.582564 | tig0019325:-131800 | Msa1372980:CDS |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | tig0019325:-130746 | Msa1372980:CDS |
| TATATAGTCACGGTGGACCT+GGG | 0.588733 | tig0019325:-130764 | Msa1372980:CDS |
| CAGGCAAGTAAATGGAGGGA+TGG | 0.589865 | tig0019325:-132261 | Msa1372980:CDS |
| GAGATATGTCAAGGGACAGA+AGG | 0.592127 | tig0019325:-132492 | Msa1372980:intron |
| ACTAGTATGCAATCCATGCA+TGG | 0.592882 | tig0019325:-131822 | Msa1372980:CDS |
| ACTTCTTCCAAGAAAAGAAG+AGG | 0.593684 | tig0019325:-131776 | Msa1372980:CDS |
| TCTTGCAACTGGGATTCTGG+AGG | 0.593767 | tig0019325:-132525 | Msa1372980:CDS |
| AAAGAGGTCCAAATGGTCCT+GGG | 0.599169 | tig0019325:-132016 | Msa1372980:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | tig0019325:+130747 | None:intergenic |
| ATTGACGGGAAATTTGATGA+CGG | 0.626327 | tig0019325:-130788 | Msa1372980:CDS |
| ACACTCGGTTCTTCAGTGCA+TGG | 0.628634 | tig0019325:-130815 | Msa1372980:CDS |
| GGAATCAGGCAAGTAAATGG+AGG | 0.632905 | tig0019325:-132266 | Msa1372980:CDS |
| ATTAGTCCAGCACAGACACT+CGG | 0.635032 | tig0019325:-130830 | Msa1372980:CDS |
| CCGGGAGAAAAGGATTTGCA+AGG | 0.635552 | tig0019325:-132336 | Msa1372980:CDS |
| GAATCAGGCAAGTAAATGGA+GGG | 0.643553 | tig0019325:-132265 | Msa1372980:CDS |
| TCTTTATCCAATGTATCCAA+CGG | 0.644524 | tig0019325:+132034 | None:intergenic |
| TTGAAAGTGAGATATGTCAA+GGG | 0.671458 | tig0019325:-132500 | Msa1372980:CDS |
| TCAATTACTGAATCTAACAA+GGG | 0.676694 | tig0019325:-131854 | Msa1372980:CDS |
| TGATGACGGATATATAGTCA+CGG | 0.676944 | tig0019325:-130774 | Msa1372980:CDS |
| TGTGACCAAACAATGAAGGG+AGG | 0.679689 | tig0019325:-132584 | Msa1372980:CDS |
| AGGCATTCATGACATCCCGA+AGG | 0.693693 | tig0019325:+132068 | None:intergenic |
| TCAAGGTAAGTATAATCCGG+AGG | 0.695456 | tig0019325:+132103 | None:intergenic |
| TCTGCATTGTGAAATCACCC+AGG | 0.713370 | tig0019325:+131999 | None:intergenic |
| TGACGGATATATAGTCACGG+TGG | 0.799576 | tig0019325:-130771 | Msa1372980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATATTGTTTTGAACTTTT+TGG | - | tig0019325:130877-130896 | Msa1372980:intron | 20.0% |
| !!! | AGTTTTTTTTTTCTTTCTTG+TGG | - | tig0019325:130938-130957 | Msa1372980:intron | 20.0% |
| !!! | TATCTGATTTTTTTTGAAAC+TGG | - | tig0019325:131939-131958 | Msa1372980:intron | 20.0% |
| !!! | GTATATTGTTTTGAACTTTT+TGG | - | tig0019325:130877-130896 | Msa1372980:intron | 20.0% |
| !!! | AGTTTTTTTTTTCTTTCTTG+TGG | - | tig0019325:130938-130957 | Msa1372980:intron | 20.0% |
| !!! | TATCTGATTTTTTTTGAAAC+TGG | - | tig0019325:131939-131958 | Msa1372980:intron | 20.0% |
| !!! | GTTTTGAACTTTTTGGATTT+TGG | - | tig0019325:130884-130903 | Msa1372980:intron | 25.0% |
| !!! | TTATTGTTTTTTTGCTTGTG+TGG | - | tig0019325:131109-131128 | Msa1372980:intron | 25.0% |
| !!! | TATTGTTTTTTTGCTTGTGT+GGG | - | tig0019325:131110-131129 | Msa1372980:intron | 25.0% |
| !!! | AATTTTGATGAACTGTTTGT+AGG | - | tig0019325:131469-131488 | Msa1372980:intron | 25.0% |
| !!! | ATTTTGATGAACTGTTTGTA+GGG | - | tig0019325:131470-131489 | Msa1372980:intron | 25.0% |
| ! | TCAATTACTGAATCTAACAA+GGG | - | tig0019325:131493-131512 | Msa1372980:intron | 25.0% |
| ! | TCAAAAAATAAGAGAGAAGA+AGG | - | tig0019325:131613-131632 | Msa1372980:intron | 25.0% |
| !!! | TGTAATACCTCTTATTTTCT+TGG | + | tig0019325:131674-131693 | None:intergenic | 25.0% |
| ! | TTGTATGTTTACAAGTTTCT+AGG | + | tig0019325:131700-131719 | None:intergenic | 25.0% |
| !! | TGAAATATTTTTCTGTGATG+TGG | - | tig0019325:131837-131856 | Msa1372980:CDS | 25.0% |
| !! | TCGTTTCTTTAATTTAGACT+TGG | - | tig0019325:131995-132014 | Msa1372980:CDS | 25.0% |
| ! | ATTATGACATCGTTTAATCT+GGG | - | tig0019325:132092-132111 | Msa1372980:CDS | 25.0% |
| ! | AACAAAGTTCTTATCTATGT+TGG | - | tig0019325:132431-132450 | Msa1372980:intron | 25.0% |
| !!! | GTTTTGAACTTTTTGGATTT+TGG | - | tig0019325:130884-130903 | Msa1372980:intron | 25.0% |
| !!! | TTATTGTTTTTTTGCTTGTG+TGG | - | tig0019325:131109-131128 | Msa1372980:intron | 25.0% |
| !!! | TATTGTTTTTTTGCTTGTGT+GGG | - | tig0019325:131110-131129 | Msa1372980:intron | 25.0% |
| !!! | AATTTTGATGAACTGTTTGT+AGG | - | tig0019325:131469-131488 | Msa1372980:intron | 25.0% |
| !!! | ATTTTGATGAACTGTTTGTA+GGG | - | tig0019325:131470-131489 | Msa1372980:intron | 25.0% |
| ! | TCAATTACTGAATCTAACAA+GGG | - | tig0019325:131493-131512 | Msa1372980:intron | 25.0% |
| ! | TCAAAAAATAAGAGAGAAGA+AGG | - | tig0019325:131613-131632 | Msa1372980:intron | 25.0% |
| !!! | TGTAATACCTCTTATTTTCT+TGG | + | tig0019325:131674-131693 | None:intergenic | 25.0% |
| ! | TTGTATGTTTACAAGTTTCT+AGG | + | tig0019325:131700-131719 | None:intergenic | 25.0% |
| !! | TGAAATATTTTTCTGTGATG+TGG | - | tig0019325:131837-131856 | Msa1372980:CDS | 25.0% |
| !! | TCGTTTCTTTAATTTAGACT+TGG | - | tig0019325:131995-132014 | Msa1372980:CDS | 25.0% |
| ! | ATTATGACATCGTTTAATCT+GGG | - | tig0019325:132092-132111 | Msa1372980:CDS | 25.0% |
| ! | AACAAAGTTCTTATCTATGT+TGG | - | tig0019325:132431-132450 | Msa1372980:intron | 25.0% |
| ATTGAAAGTGAGATATGTCA+AGG | - | tig0019325:130846-130865 | Msa1372980:intron | 30.0% | |
| TTGAAAGTGAGATATGTCAA+GGG | - | tig0019325:130847-130866 | Msa1372980:intron | 30.0% | |
| GTGAAATTGTGAATGATGTT+AGG | - | tig0019325:130915-130934 | Msa1372980:intron | 30.0% | |
| TTTATTCGTGAATGATGTGT+AGG | - | tig0019325:130980-130999 | Msa1372980:intron | 30.0% | |
| !!! | TGTTGTTTTTTGTTGAGAGT+AGG | - | tig0019325:131171-131190 | Msa1372980:intron | 30.0% |
| TTCTCAAGGTAAGTATAATC+CGG | + | tig0019325:131250-131269 | None:intergenic | 30.0% | |
| GATTATACTTACCTTGAGAA+TGG | - | tig0019325:131250-131269 | Msa1372980:intron | 30.0% | |
| TCTTTATCCAATGTATCCAA+CGG | + | tig0019325:131316-131335 | None:intergenic | 30.0% | |
| AATATATGTTTCAACTGCAG+AGG | - | tig0019325:131376-131395 | Msa1372980:intron | 30.0% | |
| GTCAATTACTGAATCTAACA+AGG | - | tig0019325:131492-131511 | Msa1372980:intron | 30.0% | |
| !!! | TTCTGCAGAAGTAGTTTTTT+CGG | + | tig0019325:131644-131663 | None:intergenic | 30.0% |
| ACTTCTTCCAAGAAAATAAG+AGG | - | tig0019325:131664-131683 | Msa1372980:intron | 30.0% | |
| GGACGTATAGTCAATATTAT+TGG | + | tig0019325:131743-131762 | None:intergenic | 30.0% | |
| !!! | GAGTTTTGATTGACTTCTTT+TGG | - | tig0019325:131879-131898 | Msa1372980:intron | 30.0% |
| AGAAACGAATCATCTATGAA+TGG | + | tig0019325:131983-132002 | None:intergenic | 30.0% | |
| CATTATGACATCGTTTAATC+TGG | - | tig0019325:132091-132110 | Msa1372980:CDS | 30.0% | |
| ATTGAAAGTGAGATATGTCA+AGG | - | tig0019325:130846-130865 | Msa1372980:intron | 30.0% | |
| TTGAAAGTGAGATATGTCAA+GGG | - | tig0019325:130847-130866 | Msa1372980:intron | 30.0% | |
| GTGAAATTGTGAATGATGTT+AGG | - | tig0019325:130915-130934 | Msa1372980:intron | 30.0% | |
| TTTATTCGTGAATGATGTGT+AGG | - | tig0019325:130980-130999 | Msa1372980:intron | 30.0% | |
| !!! | TGTTGTTTTTTGTTGAGAGT+AGG | - | tig0019325:131171-131190 | Msa1372980:intron | 30.0% |
| TTCTCAAGGTAAGTATAATC+CGG | + | tig0019325:131250-131269 | None:intergenic | 30.0% | |
| GATTATACTTACCTTGAGAA+TGG | - | tig0019325:131250-131269 | Msa1372980:intron | 30.0% | |
| TCTTTATCCAATGTATCCAA+CGG | + | tig0019325:131316-131335 | None:intergenic | 30.0% | |
| AATATATGTTTCAACTGCAG+AGG | - | tig0019325:131376-131395 | Msa1372980:intron | 30.0% | |
| GTCAATTACTGAATCTAACA+AGG | - | tig0019325:131492-131511 | Msa1372980:intron | 30.0% | |
| !!! | TTCTGCAGAAGTAGTTTTTT+CGG | + | tig0019325:131644-131663 | None:intergenic | 30.0% |
| ACTTCTTCCAAGAAAATAAG+AGG | - | tig0019325:131664-131683 | Msa1372980:intron | 30.0% | |
| GGACGTATAGTCAATATTAT+TGG | + | tig0019325:131743-131762 | None:intergenic | 30.0% | |
| !!! | GAGTTTTGATTGACTTCTTT+TGG | - | tig0019325:131879-131898 | Msa1372980:intron | 30.0% |
| AGAAACGAATCATCTATGAA+TGG | + | tig0019325:131983-132002 | None:intergenic | 30.0% | |
| CATTATGACATCGTTTAATC+TGG | - | tig0019325:132091-132110 | Msa1372980:CDS | 30.0% | |
| TTCTTGTGACCAAACAATGA+AGG | - | tig0019325:130759-130778 | Msa1372980:CDS | 35.0% | |
| TCTTGTGACCAAACAATGAA+GGG | - | tig0019325:130760-130779 | Msa1372980:CDS | 35.0% | |
| !! | GAACTTTTTGGATTTTGGTC+TGG | - | tig0019325:130889-130908 | Msa1372980:intron | 35.0% |
| ! | TCAGGAATTTTGTGCTTTTG+TGG | - | tig0019325:131047-131066 | Msa1372980:intron | 35.0% |
| ! | CAGGAATTTTGTGCTTTTGT+GGG | - | tig0019325:131048-131067 | Msa1372980:intron | 35.0% |
| GCATGCAACTCAAAAACATT+CGG | + | tig0019325:131205-131224 | None:intergenic | 35.0% | |
| !!! | AATGTTTTTGAGTTGCATGC+TGG | - | tig0019325:131205-131224 | Msa1372980:intron | 35.0% |
| TTGAGAATGGAAAACTCCTT+CGG | - | tig0019325:131263-131282 | Msa1372980:intron | 35.0% | |
| GTTGGATACATTGGATAAAG+AGG | - | tig0019325:131315-131334 | Msa1372980:intron | 35.0% | |
| ATTGGATAAAGAGGTCCAAA+TGG | - | tig0019325:131324-131343 | Msa1372980:intron | 35.0% | |
| AATTACATAGTGTCACAGCT+AGG | + | tig0019325:131425-131444 | None:intergenic | 35.0% | |
| ACTTCTTCCAAGAAAAGAAG+AGG | - | tig0019325:131571-131590 | Msa1372980:intron | 35.0% | |
| TATACGTCCATCATGAGTTA+GGG | - | tig0019325:131754-131773 | Msa1372980:CDS | 35.0% | |
| ATGTATACCCTAACTCATGA+TGG | + | tig0019325:131764-131783 | None:intergenic | 35.0% | |
| GTGATGTGGAAATAGAAGTA+AGG | - | tig0019325:131851-131870 | Msa1372980:CDS | 35.0% | |
| TCTATCATAAGTTGTGTCGA+TGG | + | tig0019325:132070-132089 | None:intergenic | 35.0% | |
| !! | ATCGAAAGCTTTATTGCACT+AGG | + | tig0019325:132130-132149 | None:intergenic | 35.0% |
| AAACTCTCCTAGAGAACTAA+TGG | - | tig0019325:132263-132282 | Msa1372980:CDS | 35.0% | |
| ATTGACGGGAAATTTGATGA+CGG | - | tig0019325:132559-132578 | Msa1372980:CDS | 35.0% | |
| !! | TGATGACGGATATATAGTCA+CGG | - | tig0019325:132573-132592 | Msa1372980:CDS | 35.0% |
| TTCTTGTGACCAAACAATGA+AGG | - | tig0019325:130759-130778 | Msa1372980:CDS | 35.0% | |
| TCTTGTGACCAAACAATGAA+GGG | - | tig0019325:130760-130779 | Msa1372980:CDS | 35.0% | |
| !! | GAACTTTTTGGATTTTGGTC+TGG | - | tig0019325:130889-130908 | Msa1372980:intron | 35.0% |
| ! | TCAGGAATTTTGTGCTTTTG+TGG | - | tig0019325:131047-131066 | Msa1372980:intron | 35.0% |
| ! | CAGGAATTTTGTGCTTTTGT+GGG | - | tig0019325:131048-131067 | Msa1372980:intron | 35.0% |
| GCATGCAACTCAAAAACATT+CGG | + | tig0019325:131205-131224 | None:intergenic | 35.0% | |
| !!! | AATGTTTTTGAGTTGCATGC+TGG | - | tig0019325:131205-131224 | Msa1372980:intron | 35.0% |
| TTGAGAATGGAAAACTCCTT+CGG | - | tig0019325:131263-131282 | Msa1372980:intron | 35.0% | |
| GTTGGATACATTGGATAAAG+AGG | - | tig0019325:131315-131334 | Msa1372980:intron | 35.0% | |
| ATTGGATAAAGAGGTCCAAA+TGG | - | tig0019325:131324-131343 | Msa1372980:intron | 35.0% | |
| AATTACATAGTGTCACAGCT+AGG | + | tig0019325:131425-131444 | None:intergenic | 35.0% | |
| ACTTCTTCCAAGAAAAGAAG+AGG | - | tig0019325:131571-131590 | Msa1372980:intron | 35.0% | |
| TATACGTCCATCATGAGTTA+GGG | - | tig0019325:131754-131773 | Msa1372980:CDS | 35.0% | |
| ATGTATACCCTAACTCATGA+TGG | + | tig0019325:131764-131783 | None:intergenic | 35.0% | |
| GTGATGTGGAAATAGAAGTA+AGG | - | tig0019325:131851-131870 | Msa1372980:CDS | 35.0% | |
| TCTATCATAAGTTGTGTCGA+TGG | + | tig0019325:132070-132089 | None:intergenic | 35.0% | |
| !! | ATCGAAAGCTTTATTGCACT+AGG | + | tig0019325:132130-132149 | None:intergenic | 35.0% |
| AAACTCTCCTAGAGAACTAA+TGG | - | tig0019325:132263-132282 | Msa1372980:CDS | 35.0% | |
| ATTGACGGGAAATTTGATGA+CGG | - | tig0019325:132559-132578 | Msa1372980:CDS | 35.0% | |
| !! | TGATGACGGATATATAGTCA+CGG | - | tig0019325:132573-132592 | Msa1372980:CDS | 35.0% |
| GAGGTTTCTTGTCAAACTGA+AGG | - | tig0019325:130795-130814 | Msa1372980:CDS | 40.0% | |
| TGAAGGATCTTCTTGCAACT+GGG | - | tig0019325:130812-130831 | Msa1372980:CDS | 40.0% | |
| CAAGGTGTGATCAAAGATTC+AGG | - | tig0019325:131029-131048 | Msa1372980:intron | 40.0% | |
| ! | TGCTTTTGTGGGAGTTGTAA+TGG | - | tig0019325:131059-131078 | Msa1372980:intron | 40.0% |
| ! | GCTTTTGTGGGAGTTGTAAT+GGG | - | tig0019325:131060-131079 | Msa1372980:intron | 40.0% |
| ATGGGAATCAGGCAAGTAAA+TGG | - | tig0019325:131078-131097 | Msa1372980:intron | 40.0% | |
| GAATCAGGCAAGTAAATGGA+GGG | - | tig0019325:131082-131101 | Msa1372980:intron | 40.0% | |
| TAGTCCTAATAAACGTCCTC+CGG | - | tig0019325:131228-131247 | Msa1372980:intron | 40.0% | |
| TAATCCGGAGGACGTTTATT+AGG | + | tig0019325:131235-131254 | None:intergenic | 40.0% | |
| TCAAGGTAAGTATAATCCGG+AGG | + | tig0019325:131247-131266 | None:intergenic | 40.0% | |
| ! | GAAGGAGTTTTCCATTCTCA+AGG | + | tig0019325:131264-131283 | None:intergenic | 40.0% |
| TGAGAATGGAAAACTCCTTC+GGG | - | tig0019325:131264-131283 | Msa1372980:intron | 40.0% | |
| AAGTCTTCCGTTGGATACAT+TGG | - | tig0019325:131306-131325 | Msa1372980:intron | 40.0% | |
| ACTAGTATGCAATCCATGCA+TGG | - | tig0019325:131525-131544 | Msa1372980:intron | 40.0% | |
| !!! | GCAGAAGTAGTTTTTTCGGA+AGG | + | tig0019325:131640-131659 | None:intergenic | 40.0% |
| CTATACGTCCATCATGAGTT+AGG | - | tig0019325:131753-131772 | Msa1372980:CDS | 40.0% | |
| ATGTACTGCCATAAGCACAT+AGG | - | tig0019325:132166-132185 | Msa1372980:intron | 40.0% | |
| AACAGTCACCTATGTGCTTA+TGG | + | tig0019325:132177-132196 | None:intergenic | 40.0% | |
| TAAGCACATAGGTGACTGTT+TGG | - | tig0019325:132177-132196 | Msa1372980:intron | 40.0% | |
| AAGCACATAGGTGACTGTTT+GGG | - | tig0019325:132178-132197 | Msa1372980:intron | 40.0% | |
| TTGGGAGAGCTTATGGATAT+TGG | - | tig0019325:132196-132215 | Msa1372980:intron | 40.0% | |
| ! | GCTGTTTCCATTAGTTCTCT+AGG | + | tig0019325:132273-132292 | None:intergenic | 40.0% |
| TCAGTGCATGGAACAATTGA+CGG | - | tig0019325:132544-132563 | Msa1372980:CDS | 40.0% | |
| GAGGTTTCTTGTCAAACTGA+AGG | - | tig0019325:130795-130814 | Msa1372980:CDS | 40.0% | |
| TGAAGGATCTTCTTGCAACT+GGG | - | tig0019325:130812-130831 | Msa1372980:CDS | 40.0% | |
| CAAGGTGTGATCAAAGATTC+AGG | - | tig0019325:131029-131048 | Msa1372980:intron | 40.0% | |
| ! | TGCTTTTGTGGGAGTTGTAA+TGG | - | tig0019325:131059-131078 | Msa1372980:intron | 40.0% |
| ! | GCTTTTGTGGGAGTTGTAAT+GGG | - | tig0019325:131060-131079 | Msa1372980:intron | 40.0% |
| ATGGGAATCAGGCAAGTAAA+TGG | - | tig0019325:131078-131097 | Msa1372980:intron | 40.0% | |
| GAATCAGGCAAGTAAATGGA+GGG | - | tig0019325:131082-131101 | Msa1372980:intron | 40.0% | |
| TAGTCCTAATAAACGTCCTC+CGG | - | tig0019325:131228-131247 | Msa1372980:intron | 40.0% | |
| TAATCCGGAGGACGTTTATT+AGG | + | tig0019325:131235-131254 | None:intergenic | 40.0% | |
| TCAAGGTAAGTATAATCCGG+AGG | + | tig0019325:131247-131266 | None:intergenic | 40.0% | |
| ! | GAAGGAGTTTTCCATTCTCA+AGG | + | tig0019325:131264-131283 | None:intergenic | 40.0% |
| TGAGAATGGAAAACTCCTTC+GGG | - | tig0019325:131264-131283 | Msa1372980:intron | 40.0% | |
| AAGTCTTCCGTTGGATACAT+TGG | - | tig0019325:131306-131325 | Msa1372980:intron | 40.0% | |
| ACTAGTATGCAATCCATGCA+TGG | - | tig0019325:131525-131544 | Msa1372980:intron | 40.0% | |
| !!! | GCAGAAGTAGTTTTTTCGGA+AGG | + | tig0019325:131640-131659 | None:intergenic | 40.0% |
| CTATACGTCCATCATGAGTT+AGG | - | tig0019325:131753-131772 | Msa1372980:CDS | 40.0% | |
| ATGTACTGCCATAAGCACAT+AGG | - | tig0019325:132166-132185 | Msa1372980:intron | 40.0% | |
| AACAGTCACCTATGTGCTTA+TGG | + | tig0019325:132177-132196 | None:intergenic | 40.0% | |
| TAAGCACATAGGTGACTGTT+TGG | - | tig0019325:132177-132196 | Msa1372980:intron | 40.0% | |
| AAGCACATAGGTGACTGTTT+GGG | - | tig0019325:132178-132197 | Msa1372980:intron | 40.0% | |
| TTGGGAGAGCTTATGGATAT+TGG | - | tig0019325:132196-132215 | Msa1372980:intron | 40.0% | |
| ! | GCTGTTTCCATTAGTTCTCT+AGG | + | tig0019325:132273-132292 | None:intergenic | 40.0% |
| TCAGTGCATGGAACAATTGA+CGG | - | tig0019325:132544-132563 | Msa1372980:CDS | 40.0% | |
| AGAAGAGAGAGAGAGAGAGA+TGG | + | tig0019325:130743-130762 | None:intergenic | 45.0% | |
| TGTGACCAAACAATGAAGGG+AGG | - | tig0019325:130763-130782 | Msa1372980:CDS | 45.0% | |
| CAGAACCTCCCTTCATTGTT+TGG | + | tig0019325:130771-130790 | None:intergenic | 45.0% | |
| CAAACAATGAAGGGAGGTTC+TGG | - | tig0019325:130769-130788 | Msa1372980:CDS | 45.0% | |
| CTGAAGGATCTTCTTGCAAC+TGG | - | tig0019325:130811-130830 | Msa1372980:CDS | 45.0% | |
| TCTTCTTGCAACTGGGATTC+TGG | - | tig0019325:130819-130838 | Msa1372980:CDS | 45.0% | |
| GAGATATGTCAAGGGACAGA+AGG | - | tig0019325:130855-130874 | Msa1372980:intron | 45.0% | |
| ! | CCTTGCAAATCCTTTTCTCC+CGG | + | tig0019325:131014-131033 | None:intergenic | 45.0% |
| ! | TGGGAGTTGTAATGGGAATC+AGG | - | tig0019325:131067-131086 | Msa1372980:intron | 45.0% |
| GGAATCAGGCAAGTAAATGG+AGG | - | tig0019325:131081-131100 | Msa1372980:intron | 45.0% | |
| GTGTGGGTTTAGCATCTTGT+AGG | - | tig0019325:131126-131145 | Msa1372980:intron | 45.0% | |
| ATCCAACGGAAGACTTGAAC+AGG | + | tig0019325:131302-131321 | None:intergenic | 45.0% | |
| TAAAGAGGTCCAAATGGTCC+TGG | - | tig0019325:131330-131349 | Msa1372980:intron | 45.0% | |
| AAAGAGGTCCAAATGGTCCT+GGG | - | tig0019325:131331-131350 | Msa1372980:intron | 45.0% | |
| TGAAATCACCCAGGACCATT+TGG | + | tig0019325:131342-131361 | None:intergenic | 45.0% | |
| TCTGCATTGTGAAATCACCC+AGG | + | tig0019325:131351-131370 | None:intergenic | 45.0% | |
| GTCTCTTTCAACTCCATGCA+TGG | + | tig0019325:131541-131560 | None:intergenic | 45.0% | |
| GAGTTGAAAGAGACTTCTGC+AGG | - | tig0019325:131547-131566 | Msa1372980:intron | 45.0% | |
| ! | AGCGCATCCTCTTCTTTTCT+TGG | + | tig0019325:131581-131600 | None:intergenic | 45.0% |
| AAAAGAAGAGGATGCGCTCT+TGG | - | tig0019325:131583-131602 | Msa1372980:intron | 45.0% | |
| TGACTGTTTGGGAGAGCTTA+TGG | - | tig0019325:132189-132208 | Msa1372980:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | tig0019325:132517-132536 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+CGG | - | tig0019325:132517-132536 | Msa1372980:CDS | 45.0% | |
| CAGTGCATGGAACAATTGAC+GGG | - | tig0019325:132545-132564 | Msa1372980:CDS | 45.0% | |
| ! | TGACGGATATATAGTCACGG+TGG | - | tig0019325:132576-132595 | Msa1372980:CDS | 45.0% |
| ATATATAGTCACGGTGGACC+TGG | - | tig0019325:132582-132601 | Msa1372980:CDS | 45.0% | |
| TATATAGTCACGGTGGACCT+GGG | - | tig0019325:132583-132602 | Msa1372980:CDS | 45.0% | |
| AGAAGAGAGAGAGAGAGAGA+TGG | + | tig0019325:130743-130762 | None:intergenic | 45.0% | |
| TGTGACCAAACAATGAAGGG+AGG | - | tig0019325:130763-130782 | Msa1372980:CDS | 45.0% | |
| CAGAACCTCCCTTCATTGTT+TGG | + | tig0019325:130771-130790 | None:intergenic | 45.0% | |
| CAAACAATGAAGGGAGGTTC+TGG | - | tig0019325:130769-130788 | Msa1372980:CDS | 45.0% | |
| CTGAAGGATCTTCTTGCAAC+TGG | - | tig0019325:130811-130830 | Msa1372980:CDS | 45.0% | |
| TCTTCTTGCAACTGGGATTC+TGG | - | tig0019325:130819-130838 | Msa1372980:CDS | 45.0% | |
| GAGATATGTCAAGGGACAGA+AGG | - | tig0019325:130855-130874 | Msa1372980:intron | 45.0% | |
| ! | CCTTGCAAATCCTTTTCTCC+CGG | + | tig0019325:131014-131033 | None:intergenic | 45.0% |
| ! | TGGGAGTTGTAATGGGAATC+AGG | - | tig0019325:131067-131086 | Msa1372980:intron | 45.0% |
| GGAATCAGGCAAGTAAATGG+AGG | - | tig0019325:131081-131100 | Msa1372980:intron | 45.0% | |
| GTGTGGGTTTAGCATCTTGT+AGG | - | tig0019325:131126-131145 | Msa1372980:intron | 45.0% | |
| ATCCAACGGAAGACTTGAAC+AGG | + | tig0019325:131302-131321 | None:intergenic | 45.0% | |
| TAAAGAGGTCCAAATGGTCC+TGG | - | tig0019325:131330-131349 | Msa1372980:intron | 45.0% | |
| AAAGAGGTCCAAATGGTCCT+GGG | - | tig0019325:131331-131350 | Msa1372980:intron | 45.0% | |
| TGAAATCACCCAGGACCATT+TGG | + | tig0019325:131342-131361 | None:intergenic | 45.0% | |
| TCTGCATTGTGAAATCACCC+AGG | + | tig0019325:131351-131370 | None:intergenic | 45.0% | |
| GTCTCTTTCAACTCCATGCA+TGG | + | tig0019325:131541-131560 | None:intergenic | 45.0% | |
| GAGTTGAAAGAGACTTCTGC+AGG | - | tig0019325:131547-131566 | Msa1372980:intron | 45.0% | |
| ! | AGCGCATCCTCTTCTTTTCT+TGG | + | tig0019325:131581-131600 | None:intergenic | 45.0% |
| AAAAGAAGAGGATGCGCTCT+TGG | - | tig0019325:131583-131602 | Msa1372980:intron | 45.0% | |
| TGACTGTTTGGGAGAGCTTA+TGG | - | tig0019325:132189-132208 | Msa1372980:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | tig0019325:132517-132536 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+CGG | - | tig0019325:132517-132536 | Msa1372980:CDS | 45.0% | |
| CAGTGCATGGAACAATTGAC+GGG | - | tig0019325:132545-132564 | Msa1372980:CDS | 45.0% | |
| ! | TGACGGATATATAGTCACGG+TGG | - | tig0019325:132576-132595 | Msa1372980:CDS | 45.0% |
| ATATATAGTCACGGTGGACC+TGG | - | tig0019325:132582-132601 | Msa1372980:CDS | 45.0% | |
| TATATAGTCACGGTGGACCT+GGG | - | tig0019325:132583-132602 | Msa1372980:CDS | 45.0% | |
| ! | TGAAGGGAGGTTCTGGTAAG+AGG | - | tig0019325:130776-130795 | Msa1372980:CDS | 50.0% |
| TCTTGCAACTGGGATTCTGG+AGG | - | tig0019325:130822-130841 | Msa1372980:CDS | 50.0% | |
| CTTGCAACTGGGATTCTGGA+GGG | - | tig0019325:130823-130842 | Msa1372980:CDS | 50.0% | |
| TGATGTGTAGGCGCGTAAAC+CGG | - | tig0019325:130992-131011 | Msa1372980:intron | 50.0% | |
| CCGGGAGAAAAGGATTTGCA+AGG | - | tig0019325:131011-131030 | Msa1372980:intron | 50.0% | |
| CAGGCAAGTAAATGGAGGGA+TGG | - | tig0019325:131086-131105 | Msa1372980:intron | 50.0% | |
| AGGCATTCATGACATCCCGA+AGG | + | tig0019325:131282-131301 | None:intergenic | 50.0% | |
| TGCCTGTTCAAGTCTTCCGT+TGG | - | tig0019325:131297-131316 | Msa1372980:intron | 50.0% | |
| ! | AGAGGATGCGCTCTTGGTTT+TGG | - | tig0019325:131589-131608 | Msa1372980:intron | 50.0% |
| ACACTCGGTTCTTCAGTGCA+TGG | - | tig0019325:132532-132551 | Msa1372980:CDS | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | + | tig0019325:132603-132622 | None:intergenic | 50.0% | |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | tig0019325:132601-132620 | Msa1372980:CDS | 50.0% |
| ! | TGAAGGGAGGTTCTGGTAAG+AGG | - | tig0019325:130776-130795 | Msa1372980:CDS | 50.0% |
| TCTTGCAACTGGGATTCTGG+AGG | - | tig0019325:130822-130841 | Msa1372980:CDS | 50.0% | |
| CTTGCAACTGGGATTCTGGA+GGG | - | tig0019325:130823-130842 | Msa1372980:CDS | 50.0% | |
| TGATGTGTAGGCGCGTAAAC+CGG | - | tig0019325:130992-131011 | Msa1372980:intron | 50.0% | |
| CCGGGAGAAAAGGATTTGCA+AGG | - | tig0019325:131011-131030 | Msa1372980:intron | 50.0% | |
| CAGGCAAGTAAATGGAGGGA+TGG | - | tig0019325:131086-131105 | Msa1372980:intron | 50.0% | |
| AGGCATTCATGACATCCCGA+AGG | + | tig0019325:131282-131301 | None:intergenic | 50.0% | |
| TGCCTGTTCAAGTCTTCCGT+TGG | - | tig0019325:131297-131316 | Msa1372980:intron | 50.0% | |
| ! | AGAGGATGCGCTCTTGGTTT+TGG | - | tig0019325:131589-131608 | Msa1372980:intron | 50.0% |
| ACACTCGGTTCTTCAGTGCA+TGG | - | tig0019325:132532-132551 | Msa1372980:CDS | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | + | tig0019325:132603-132622 | None:intergenic | 50.0% | |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | tig0019325:132601-132620 | Msa1372980:CDS | 50.0% |
| GATGTGTAGGCGCGTAAACC+GGG | - | tig0019325:130993-131012 | Msa1372980:intron | 55.0% | |
| GAAGAACCGAGTGTCTGTGC+TGG | + | tig0019325:132526-132545 | None:intergenic | 55.0% | |
| GATGTGTAGGCGCGTAAACC+GGG | - | tig0019325:130993-131012 | Msa1372980:intron | 55.0% | |
| GAAGAACCGAGTGTCTGTGC+TGG | + | tig0019325:132526-132545 | None:intergenic | 55.0% | |
| GGCGCGTAAACCGGGAGAAA+AGG | - | tig0019325:131001-131020 | Msa1372980:intron | 60.0% | |
| GGCGCGTAAACCGGGAGAAA+AGG | - | tig0019325:131001-131020 | Msa1372980:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019325 | gene | 130727 | 132642 | 130727 | ID=Msa1372980;Name=Msa1372980 |
| tig0019325 | mRNA | 130727 | 132642 | 130727 | ID=Msa1372980-mRNA-1;Parent=Msa1372980;Name=Msa1372980-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|5|0|269 |
| tig0019325 | exon | 132493 | 132642 | 132493 | ID=Msa1372980-mRNA-1:exon:3065;Parent=Msa1372980-mRNA-1 |
| tig0019325 | exon | 132242 | 132367 | 132242 | ID=Msa1372980-mRNA-1:exon:3064;Parent=Msa1372980-mRNA-1 |
| tig0019325 | exon | 131972 | 132176 | 131972 | ID=Msa1372980-mRNA-1:exon:3063;Parent=Msa1372980-mRNA-1 |
| tig0019325 | exon | 131684 | 131878 | 131684 | ID=Msa1372980-mRNA-1:exon:3062;Parent=Msa1372980-mRNA-1 |
| tig0019325 | exon | 130727 | 130860 | 130727 | ID=Msa1372980-mRNA-1:exon:3061;Parent=Msa1372980-mRNA-1 |
| tig0019325 | CDS | 132493 | 132642 | 132493 | ID=Msa1372980-mRNA-1:cds;Parent=Msa1372980-mRNA-1 |
| tig0019325 | CDS | 132242 | 132367 | 132242 | ID=Msa1372980-mRNA-1:cds;Parent=Msa1372980-mRNA-1 |
| tig0019325 | CDS | 131972 | 132176 | 131972 | ID=Msa1372980-mRNA-1:cds;Parent=Msa1372980-mRNA-1 |
| tig0019325 | CDS | 131684 | 131878 | 131684 | ID=Msa1372980-mRNA-1:cds;Parent=Msa1372980-mRNA-1 |
| tig0019325 | CDS | 130727 | 130860 | 130727 | ID=Msa1372980-mRNA-1:cds;Parent=Msa1372980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
