Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553210 | XP_003607307.1 | 98.324 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 9.34e-128 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553210 | sp|Q9LJZ5|UBC19_ARATH | 81.356 | 177 | 29 | 1 | 1 | 173 | 1 | 177 | 1.68e-100 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553210 | G7JQK2 | 98.324 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 4.46e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0553210 | 0.819048 | 1.424710e-52 | -8.615850e-47 |
| Msa0030070 | Msa0553210 | 0.828372 | 9.328379e-55 | -8.615850e-47 |
| Msa0032980 | Msa0553210 | 0.806627 | 7.502553e-50 | -8.615850e-47 |
| Msa0040640 | Msa0553210 | 0.820664 | 6.085035e-53 | -8.615850e-47 |
| Msa0050530 | Msa0553210 | 0.809211 | 2.116160e-50 | -8.615850e-47 |
| Msa0091350 | Msa0553210 | 0.832765 | 7.843280e-56 | -8.615850e-47 |
| Msa0100600 | Msa0553210 | 0.802443 | 5.595863e-49 | -8.615850e-47 |
| Msa0106630 | Msa0553210 | 0.803326 | 3.677929e-49 | -8.615850e-47 |
| Msa0113410 | Msa0553210 | 0.806626 | 7.506988e-50 | -8.615850e-47 |
| Msa0125590 | Msa0553210 | 0.823835 | 1.118127e-53 | -8.615850e-47 |
| Msa0127340 | Msa0553210 | 0.825976 | 3.494537e-54 | -8.615850e-47 |
| Msa0153210 | Msa0553210 | 0.814356 | 1.606060e-51 | -8.615850e-47 |
| Msa0165830 | Msa0553210 | 0.813296 | 2.749839e-51 | -8.615850e-47 |
| Msa0170070 | Msa0553210 | 0.800795 | 1.218835e-48 | -8.615850e-47 |
| Msa0184700 | Msa0553210 | 0.824956 | 6.093924e-54 | -8.615850e-47 |
| Msa0204970 | Msa0553210 | 0.807929 | 3.976428e-50 | -8.615850e-47 |
| Msa0225800 | Msa0553210 | 0.813488 | 2.495642e-51 | -8.615850e-47 |
| Msa0373170 | Msa0553210 | 0.802577 | 5.252981e-49 | -8.615850e-47 |
| Msa0405080 | Msa0553210 | 0.811180 | 7.963282e-51 | -8.615850e-47 |
| Msa0412130 | Msa0553210 | 0.802876 | 4.555778e-49 | -8.615850e-47 |
| Msa0420430 | Msa0553210 | 0.834691 | 2.588377e-56 | -8.615850e-47 |
| Msa0421750 | Msa0553210 | 0.803111 | 4.074938e-49 | -8.615850e-47 |
| Msa0433760 | Msa0553210 | 0.807234 | 5.583317e-50 | -8.615850e-47 |
| Msa0461550 | Msa0553210 | 0.829184 | 5.933021e-55 | -8.615850e-47 |
| Msa0466520 | Msa0553210 | 0.826696 | 2.354780e-54 | -8.615850e-47 |
| Msa0467690 | Msa0553210 | 0.804924 | 1.710187e-49 | -8.615850e-47 |
| Msa0477630 | Msa0553210 | 0.803093 | 4.109499e-49 | -8.615850e-47 |
| Msa0249870 | Msa0553210 | 0.820032 | 8.498948e-53 | -8.615850e-47 |
| Msa0260630 | Msa0553210 | 0.809498 | 1.836743e-50 | -8.615850e-47 |
| Msa0281540 | Msa0553210 | 0.830848 | 2.331158e-55 | -8.615850e-47 |
| Msa0320580 | Msa0553210 | 0.821635 | 3.636071e-53 | -8.615850e-47 |
| Msa0344110 | Msa0553210 | 0.823479 | 1.354863e-53 | -8.615850e-47 |
| Msa0507810 | Msa0553210 | 0.828014 | 1.137767e-54 | -8.615850e-47 |
| Msa0507820 | Msa0553210 | 0.828377 | 9.298853e-55 | -8.615850e-47 |
| Msa0507920 | Msa0553210 | 0.824051 | 9.951346e-54 | -8.615850e-47 |
| Msa0513080 | Msa0553210 | 0.809533 | 1.805760e-50 | -8.615850e-47 |
| Msa0514020 | Msa0553210 | 0.801336 | 9.447175e-49 | -8.615850e-47 |
| Msa0524320 | Msa0553210 | 0.807161 | 5.787192e-50 | -8.615850e-47 |
| Msa0524430 | Msa0553210 | 0.803994 | 2.672821e-49 | -8.615850e-47 |
| Msa0527850 | Msa0553210 | 0.818554 | 1.844553e-52 | -8.615850e-47 |
| Msa0541740 | Msa0553210 | 0.824379 | 8.334436e-54 | -8.615850e-47 |
| Msa0544410 | Msa0553210 | 0.829329 | 5.469810e-55 | -8.615850e-47 |
| Msa0553210 | Msa0554300 | 0.826153 | 3.172324e-54 | -8.615850e-47 |
| Msa0553210 | Msa0557850 | 0.846914 | 1.609612e-59 | -8.615850e-47 |
| Msa0553210 | Msa0560570 | 0.827316 | 1.673218e-54 | -8.615850e-47 |
| Msa0553210 | Msa0561560 | 0.801396 | 9.186035e-49 | -8.615850e-47 |
| Msa0553210 | Msa0564980 | 0.804874 | 1.751940e-49 | -8.615850e-47 |
| Msa0553210 | Msa0568710 | 0.853832 | 1.840541e-61 | -8.615850e-47 |
| Msa0553210 | Msa0568900 | 0.816202 | 6.246273e-52 | -8.615850e-47 |
| Msa0553210 | Msa0574660 | 0.801551 | 8.535256e-49 | -8.615850e-47 |
| Msa0553210 | Msa0575710 | 0.832438 | 9.451860e-56 | -8.615850e-47 |
| Msa0553210 | Msa0582460 | 0.818066 | 2.380024e-52 | -8.615850e-47 |
| Msa0553210 | Msa0586200 | 0.805603 | 1.232543e-49 | -8.615850e-47 |
| Msa0553210 | Msa0608350 | 0.818918 | 1.525193e-52 | -8.615850e-47 |
| Msa0553210 | Msa0612520 | 0.815055 | 1.124357e-51 | -8.615850e-47 |
| Msa0553210 | Msa0639190 | 0.801036 | 1.088382e-48 | -8.615850e-47 |
| Msa0553210 | Msa0640800 | 0.805065 | 1.598193e-49 | -8.615850e-47 |
| Msa0553210 | Msa0647440 | 0.852065 | 5.894025e-61 | -8.615850e-47 |
| Msa0553210 | Msa0648760 | 0.839771 | 1.297931e-57 | -8.615850e-47 |
| Msa0553210 | Msa0653160 | 0.828419 | 9.087081e-55 | -8.615850e-47 |
| Msa0553210 | Msa0657210 | 0.814706 | 1.343839e-51 | -8.615850e-47 |
| Msa0553210 | Msa0663290 | 0.831034 | 2.097725e-55 | -8.615850e-47 |
| Msa0553210 | Msa0664070 | 0.828721 | 7.678583e-55 | -8.615850e-47 |
| Msa0553210 | Msa0688620 | 0.859115 | 5.168411e-63 | -8.615850e-47 |
| Msa0553210 | Msa0690320 | 0.863311 | 2.726252e-64 | -8.615850e-47 |
| Msa0553210 | Msa0691270 | 0.825304 | 5.041853e-54 | -8.615850e-47 |
| Msa0553210 | Msa0695560 | 0.841913 | 3.559873e-58 | -8.615850e-47 |
| Msa0553210 | Msa0701250 | 0.824960 | 6.080277e-54 | -8.615850e-47 |
| Msa0553210 | Msa0720280 | 0.810085 | 1.373199e-50 | -8.615850e-47 |
| Msa0553210 | Msa0749190 | 0.848945 | 4.433501e-60 | -8.615850e-47 |
| Msa0553210 | Msa0750520 | 0.857138 | 2.001136e-62 | -8.615850e-47 |
| Msa0553210 | Msa0803140 | 0.818086 | 2.355012e-52 | -8.615850e-47 |
| Msa0553210 | Msa0816080 | 0.804635 | 1.965586e-49 | -8.615850e-47 |
| Msa0553210 | Msa0841500 | 0.821410 | 4.097962e-53 | -8.615850e-47 |
| Msa0553210 | Msa0900090 | 0.817507 | 3.180844e-52 | -8.615850e-47 |
| Msa0553210 | Msa0926760 | 0.816099 | 6.585425e-52 | -8.615850e-47 |
| Msa0553210 | Msa0929900 | 0.815204 | 1.042054e-51 | -8.615850e-47 |
| Msa0553210 | Msa0965470 | 0.831916 | 1.272776e-55 | -8.615850e-47 |
| Msa0553210 | Msa0978980 | 0.815167 | 1.062043e-51 | -8.615850e-47 |
| Msa0553210 | Msa1033420 | 0.830820 | 2.367155e-55 | -8.615850e-47 |
| Msa0553210 | Msa1034960 | 0.814978 | 1.169544e-51 | -8.615850e-47 |
| Msa0553210 | Msa1071410 | 0.855341 | 6.732162e-62 | -8.615850e-47 |
| Msa0553210 | Msa1073060 | 0.824721 | 6.924921e-54 | -8.615850e-47 |
| Msa0553210 | Msa1078860 | 0.818403 | 1.995780e-52 | -8.615850e-47 |
| Msa0553210 | Msa1078990 | 0.804092 | 2.550339e-49 | -8.615850e-47 |
| Msa0553210 | Msa1106220 | 0.846050 | 2.770609e-59 | -8.615850e-47 |
| Msa0553210 | Msa1144990 | 0.802898 | 4.509439e-49 | -8.615850e-47 |
| Msa0553210 | Msa1160780 | 0.805234 | 1.473164e-49 | -8.615850e-47 |
| Msa0553210 | Msa1169170 | 0.823615 | 1.259327e-53 | -8.615850e-47 |
| Msa0553210 | Msa1169690 | 0.803381 | 3.581688e-49 | -8.615850e-47 |
| Msa0553210 | Msa1254420 | 0.806744 | 7.088264e-50 | -8.615850e-47 |
| Msa0553210 | Msa1267930 | 0.824859 | 6.424355e-54 | -8.615850e-47 |
| Msa0553210 | Msa1294790 | 0.820464 | 6.765606e-53 | -8.615850e-47 |
| Msa0553210 | Msa1297070 | 0.800450 | 1.432932e-48 | -8.615850e-47 |
| Msa0553210 | Msa1372030 | 0.819061 | 1.415286e-52 | -8.615850e-47 |
| Msa0553210 | Msa1376310 | 0.801740 | 7.806834e-49 | -8.615850e-47 |
| Msa0553210 | Msa1381800 | 0.852929 | 3.342984e-61 | -8.615850e-47 |
| Msa0553210 | Msa1406720 | 0.815938 | 7.154246e-52 | -8.615850e-47 |
| Msa0553210 | Msa1457840 | 0.822186 | 2.710968e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553210 | MtrunA17_Chr4g0038891 | 98.324 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 8.59e-132 | 366 |
| Msa0553210 | MtrunA17_Chr5g0396451 | 84.746 | 177 | 27 | 0 | 1 | 177 | 1 | 177 | 8.99e-114 | 320 |
| Msa0553210 | MtrunA17_Chr1g0199951 | 66.258 | 163 | 54 | 1 | 18 | 179 | 27 | 189 | 8.77e-75 | 222 |
| Msa0553210 | MtrunA17_Chr4g0060351 | 46.853 | 143 | 75 | 1 | 30 | 171 | 2 | 144 | 1.75e-40 | 134 |
| Msa0553210 | MtrunA17_Chr8g0362321 | 46.154 | 143 | 76 | 1 | 30 | 171 | 2 | 144 | 2.82e-40 | 133 |
| Msa0553210 | MtrunA17_Chr2g0316201 | 45.312 | 128 | 70 | 0 | 35 | 162 | 8 | 135 | 3.50e-35 | 120 |
| Msa0553210 | MtrunA17_Chr2g0316211 | 44.882 | 127 | 70 | 0 | 36 | 162 | 9 | 135 | 1.86e-34 | 119 |
| Msa0553210 | MtrunA17_Chr4g0037011 | 44.715 | 123 | 68 | 0 | 35 | 157 | 4 | 126 | 4.76e-34 | 117 |
| Msa0553210 | MtrunA17_Chr3g0108261 | 44.355 | 124 | 69 | 0 | 35 | 158 | 4 | 127 | 7.04e-34 | 117 |
| Msa0553210 | MtrunA17_Chr5g0432831 | 44.355 | 124 | 69 | 0 | 35 | 158 | 4 | 127 | 7.59e-34 | 117 |
| Msa0553210 | MtrunA17_Chr8g0369311 | 42.537 | 134 | 77 | 0 | 29 | 162 | 54 | 187 | 8.32e-34 | 119 |
| Msa0553210 | MtrunA17_Chr7g0275361 | 42.188 | 128 | 74 | 0 | 35 | 162 | 4 | 131 | 1.87e-33 | 116 |
| Msa0553210 | MtrunA17_Chr1g0154011 | 42.969 | 128 | 73 | 0 | 35 | 162 | 4 | 131 | 4.54e-33 | 115 |
| Msa0553210 | MtrunA17_Chr4g0031181 | 36.641 | 131 | 69 | 2 | 57 | 173 | 30 | 160 | 1.66e-26 | 99.0 |
| Msa0553210 | MtrunA17_Chr8g0378601 | 37.903 | 124 | 77 | 0 | 35 | 158 | 25 | 148 | 6.42e-26 | 97.4 |
| Msa0553210 | MtrunA17_Chr3g0131871 | 38.519 | 135 | 79 | 3 | 36 | 168 | 6 | 138 | 9.45e-25 | 95.1 |
| Msa0553210 | MtrunA17_Chr2g0328001 | 36.641 | 131 | 69 | 2 | 57 | 173 | 30 | 160 | 1.23e-24 | 94.0 |
| Msa0553210 | MtrunA17_Chr3g0139901 | 40.196 | 102 | 60 | 1 | 57 | 157 | 30 | 131 | 1.03e-22 | 89.0 |
| Msa0553210 | MtrunA17_Chr4g0053191 | 36.620 | 142 | 82 | 3 | 36 | 169 | 8 | 149 | 1.20e-21 | 86.3 |
| Msa0553210 | MtrunA17_Chr5g0401831 | 35.616 | 146 | 86 | 3 | 36 | 173 | 8 | 153 | 1.60e-21 | 85.9 |
| Msa0553210 | MtrunA17_Chr4g0059291 | 35.200 | 125 | 76 | 3 | 35 | 157 | 6 | 127 | 1.35e-19 | 81.6 |
| Msa0553210 | MtrunA17_Chr5g0403591 | 31.343 | 134 | 88 | 2 | 36 | 169 | 33 | 162 | 1.27e-17 | 76.3 |
| Msa0553210 | MtrunA17_Chr7g0254701 | 30.968 | 155 | 99 | 2 | 18 | 171 | 3 | 150 | 2.52e-17 | 77.0 |
| Msa0553210 | MtrunA17_Chr8g0348701 | 33.600 | 125 | 78 | 4 | 35 | 157 | 6 | 127 | 3.27e-17 | 75.1 |
| Msa0553210 | MtrunA17_Chr8g0387131 | 33.333 | 129 | 81 | 4 | 31 | 157 | 2 | 127 | 9.28e-17 | 73.9 |
| Msa0553210 | MtrunA17_Chr8g0372391 | 35.354 | 99 | 62 | 2 | 36 | 133 | 19 | 116 | 4.09e-15 | 69.3 |
| Msa0553210 | MtrunA17_Chr5g0404931 | 35.000 | 100 | 63 | 2 | 36 | 134 | 19 | 117 | 5.40e-14 | 66.2 |
| Msa0553210 | MtrunA17_Chr4g0068301 | 29.530 | 149 | 87 | 5 | 33 | 174 | 11 | 148 | 3.29e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553210 | AT3G20060.1 | 81.356 | 177 | 29 | 1 | 1 | 173 | 1 | 177 | 1.71e-101 | 290 |
| Msa0553210 | AT1G50490.1 | 81.667 | 180 | 30 | 1 | 1 | 177 | 1 | 180 | 1.52e-97 | 280 |
| Msa0553210 | AT3G20060.2 | 87.500 | 136 | 17 | 0 | 42 | 177 | 1 | 136 | 3.33e-87 | 252 |
| Msa0553210 | AT1G14400.1 | 46.154 | 143 | 76 | 1 | 30 | 171 | 2 | 144 | 1.44e-39 | 132 |
| Msa0553210 | AT1G14400.2 | 46.154 | 143 | 76 | 1 | 30 | 171 | 2 | 144 | 1.44e-39 | 132 |
| Msa0553210 | AT2G02760.1 | 46.154 | 143 | 76 | 1 | 30 | 171 | 2 | 144 | 1.58e-39 | 132 |
| Msa0553210 | AT2G02760.2 | 46.154 | 143 | 76 | 1 | 30 | 171 | 2 | 144 | 1.58e-39 | 132 |
| Msa0553210 | AT2G02760.4 | 46.154 | 143 | 76 | 1 | 30 | 171 | 2 | 144 | 1.58e-39 | 132 |
| Msa0553210 | AT2G02760.3 | 46.154 | 143 | 76 | 1 | 30 | 171 | 2 | 144 | 1.58e-39 | 132 |
| Msa0553210 | AT5G62540.1 | 46.479 | 142 | 74 | 2 | 30 | 169 | 2 | 143 | 4.07e-37 | 125 |
| Msa0553210 | AT1G78870.2 | 45.312 | 128 | 70 | 0 | 35 | 162 | 8 | 135 | 5.38e-35 | 120 |
| Msa0553210 | AT1G16890.2 | 44.531 | 128 | 71 | 0 | 35 | 162 | 8 | 135 | 2.11e-34 | 119 |
| Msa0553210 | AT5G56150.1 | 45.161 | 124 | 68 | 0 | 35 | 158 | 4 | 127 | 3.39e-34 | 118 |
| Msa0553210 | AT1G64230.2 | 44.355 | 124 | 69 | 0 | 35 | 158 | 4 | 127 | 1.50e-33 | 116 |
| Msa0553210 | AT1G64230.1 | 44.355 | 124 | 69 | 0 | 35 | 158 | 4 | 127 | 1.50e-33 | 116 |
| Msa0553210 | AT4G27960.1 | 41.860 | 129 | 75 | 0 | 35 | 163 | 4 | 132 | 1.67e-33 | 116 |
| Msa0553210 | AT2G16740.1 | 41.176 | 136 | 79 | 1 | 35 | 169 | 4 | 139 | 1.80e-33 | 116 |
| Msa0553210 | AT3G08700.2 | 42.029 | 138 | 78 | 2 | 35 | 170 | 4 | 141 | 5.03e-33 | 115 |
| Msa0553210 | AT3G08700.1 | 42.029 | 138 | 78 | 2 | 35 | 170 | 4 | 141 | 5.03e-33 | 115 |
| Msa0553210 | AT3G08690.2 | 43.548 | 124 | 70 | 0 | 35 | 158 | 4 | 127 | 7.30e-33 | 115 |
| Msa0553210 | AT3G08690.1 | 43.548 | 124 | 70 | 0 | 35 | 158 | 4 | 127 | 7.30e-33 | 115 |
| Msa0553210 | AT5G53300.2 | 41.085 | 129 | 76 | 0 | 35 | 163 | 4 | 132 | 8.13e-33 | 114 |
| Msa0553210 | AT5G53300.4 | 41.085 | 129 | 76 | 0 | 35 | 163 | 4 | 132 | 8.13e-33 | 114 |
| Msa0553210 | AT5G53300.1 | 41.085 | 129 | 76 | 0 | 35 | 163 | 4 | 132 | 8.13e-33 | 114 |
| Msa0553210 | AT1G16890.3 | 45.385 | 130 | 69 | 1 | 35 | 162 | 15 | 144 | 8.63e-33 | 115 |
| Msa0553210 | AT5G41700.5 | 42.742 | 124 | 71 | 0 | 35 | 158 | 4 | 127 | 9.46e-33 | 114 |
| Msa0553210 | AT5G41700.2 | 42.742 | 124 | 71 | 0 | 35 | 158 | 4 | 127 | 9.46e-33 | 114 |
| Msa0553210 | AT5G41700.1 | 42.742 | 124 | 71 | 0 | 35 | 158 | 4 | 127 | 9.46e-33 | 114 |
| Msa0553210 | AT4G27960.2 | 41.860 | 129 | 75 | 0 | 35 | 163 | 34 | 162 | 2.68e-32 | 114 |
| Msa0553210 | AT5G41700.4 | 43.200 | 125 | 70 | 1 | 35 | 158 | 4 | 128 | 5.47e-31 | 110 |
| Msa0553210 | AT1G64230.3 | 41.353 | 133 | 69 | 1 | 35 | 158 | 4 | 136 | 1.52e-30 | 109 |
| Msa0553210 | AT1G64230.5 | 46.602 | 103 | 55 | 0 | 56 | 158 | 67 | 169 | 1.16e-29 | 108 |
| Msa0553210 | AT1G64230.4 | 46.602 | 103 | 55 | 0 | 56 | 158 | 67 | 169 | 1.16e-29 | 108 |
| Msa0553210 | AT1G16890.1 | 49.474 | 95 | 48 | 0 | 68 | 162 | 8 | 102 | 1.23e-28 | 103 |
| Msa0553210 | AT1G78870.4 | 49.474 | 95 | 48 | 0 | 68 | 162 | 8 | 102 | 1.31e-28 | 103 |
| Msa0553210 | AT1G78870.3 | 44.762 | 105 | 58 | 0 | 35 | 139 | 8 | 112 | 1.55e-27 | 100 |
| Msa0553210 | AT1G78870.1 | 48.958 | 96 | 48 | 1 | 68 | 162 | 8 | 103 | 3.15e-27 | 99.8 |
| Msa0553210 | AT3G13550.1 | 37.500 | 136 | 85 | 0 | 35 | 170 | 39 | 174 | 3.73e-27 | 101 |
| Msa0553210 | AT1G36340.2 | 41.606 | 137 | 78 | 2 | 26 | 162 | 3 | 137 | 1.84e-26 | 99.0 |
| Msa0553210 | AT1G36340.1 | 41.606 | 137 | 78 | 2 | 26 | 162 | 3 | 137 | 1.84e-26 | 99.0 |
| Msa0553210 | AT5G56150.2 | 43.000 | 100 | 57 | 0 | 35 | 134 | 4 | 103 | 1.34e-25 | 95.1 |
| Msa0553210 | AT5G50870.1 | 41.129 | 124 | 68 | 3 | 34 | 155 | 4 | 124 | 4.78e-25 | 96.3 |
| Msa0553210 | AT5G50870.2 | 41.129 | 124 | 68 | 3 | 34 | 155 | 4 | 124 | 5.68e-25 | 96.3 |
| Msa0553210 | AT5G41700.3 | 40.385 | 104 | 62 | 0 | 35 | 138 | 4 | 107 | 2.14e-24 | 93.2 |
| Msa0553210 | AT3G13550.2 | 40.000 | 110 | 66 | 0 | 35 | 144 | 39 | 148 | 2.38e-24 | 94.0 |
| Msa0553210 | AT5G53300.3 | 40.404 | 99 | 59 | 0 | 35 | 133 | 4 | 102 | 8.22e-24 | 90.5 |
| Msa0553210 | AT3G55380.1 | 35.115 | 131 | 71 | 2 | 57 | 173 | 31 | 161 | 9.79e-24 | 92.0 |
| Msa0553210 | AT5G59300.1 | 35.115 | 131 | 71 | 2 | 57 | 173 | 30 | 160 | 1.13e-23 | 92.0 |
| Msa0553210 | AT3G46460.1 | 35.878 | 131 | 70 | 2 | 57 | 173 | 30 | 160 | 1.96e-23 | 91.3 |
| Msa0553210 | AT5G25760.1 | 39.252 | 107 | 64 | 1 | 52 | 157 | 25 | 131 | 9.16e-23 | 89.4 |
| Msa0553210 | AT5G25760.2 | 39.252 | 107 | 64 | 1 | 52 | 157 | 25 | 131 | 9.16e-23 | 89.4 |
| Msa0553210 | AT1G63800.1 | 37.405 | 131 | 65 | 4 | 35 | 157 | 6 | 127 | 6.08e-21 | 85.5 |
| Msa0553210 | AT3G57870.1 | 36.620 | 142 | 82 | 3 | 36 | 169 | 9 | 150 | 1.24e-20 | 84.0 |
| Msa0553210 | AT5G41340.1 | 37.405 | 131 | 65 | 4 | 35 | 157 | 6 | 127 | 2.16e-20 | 84.0 |
| Msa0553210 | AT1G63800.2 | 41.304 | 92 | 52 | 2 | 68 | 157 | 21 | 112 | 3.07e-19 | 80.5 |
| Msa0553210 | AT2G46030.5 | 35.200 | 125 | 76 | 3 | 35 | 157 | 6 | 127 | 6.24e-19 | 80.1 |
| Msa0553210 | AT2G46030.1 | 35.200 | 125 | 76 | 3 | 35 | 157 | 6 | 127 | 6.24e-19 | 80.1 |
| Msa0553210 | AT2G18600.1 | 34.146 | 123 | 78 | 3 | 36 | 157 | 35 | 155 | 1.62e-18 | 79.0 |
| Msa0553210 | AT2G18600.2 | 34.146 | 123 | 78 | 3 | 36 | 157 | 35 | 155 | 1.62e-18 | 79.0 |
| Msa0553210 | AT2G46030.3 | 35.200 | 125 | 76 | 3 | 35 | 157 | 78 | 199 | 6.35e-18 | 79.0 |
| Msa0553210 | AT5G05080.2 | 33.099 | 142 | 93 | 2 | 32 | 172 | 10 | 150 | 6.64e-18 | 79.0 |
| Msa0553210 | AT5G05080.3 | 33.099 | 142 | 93 | 2 | 32 | 172 | 10 | 150 | 6.64e-18 | 79.0 |
| Msa0553210 | AT5G05080.1 | 33.099 | 142 | 93 | 2 | 32 | 172 | 10 | 150 | 6.64e-18 | 79.0 |
| Msa0553210 | AT5G05080.4 | 33.099 | 142 | 93 | 2 | 32 | 172 | 10 | 150 | 6.64e-18 | 79.0 |
| Msa0553210 | AT4G36800.2 | 31.148 | 122 | 83 | 1 | 36 | 157 | 34 | 154 | 1.16e-16 | 74.3 |
| Msa0553210 | AT4G36800.1 | 31.148 | 122 | 83 | 1 | 36 | 157 | 34 | 154 | 1.16e-16 | 74.3 |
| Msa0553210 | AT3G55380.2 | 27.907 | 172 | 75 | 4 | 51 | 173 | 24 | 195 | 2.34e-16 | 73.6 |
| Msa0553210 | AT2G46030.4 | 36.634 | 101 | 62 | 2 | 59 | 157 | 30 | 130 | 2.74e-16 | 73.2 |
| Msa0553210 | AT2G46030.2 | 36.634 | 101 | 62 | 2 | 59 | 157 | 30 | 130 | 2.74e-16 | 73.2 |
| Msa0553210 | AT5G41340.2 | 41.176 | 85 | 48 | 2 | 75 | 157 | 8 | 92 | 2.94e-16 | 72.4 |
| Msa0553210 | AT3G46460.3 | 33.333 | 111 | 60 | 2 | 77 | 173 | 8 | 118 | 6.28e-16 | 70.9 |
| Msa0553210 | AT3G46460.2 | 33.333 | 111 | 60 | 2 | 77 | 173 | 8 | 118 | 6.28e-16 | 70.9 |
| Msa0553210 | AT3G24515.1 | 37.391 | 115 | 63 | 4 | 68 | 173 | 51 | 165 | 1.06e-15 | 74.3 |
| Msa0553210 | AT3G24515.3 | 37.391 | 115 | 63 | 4 | 68 | 173 | 76 | 190 | 1.60e-15 | 73.9 |
| Msa0553210 | AT1G75440.1 | 35.135 | 111 | 70 | 2 | 24 | 133 | 7 | 116 | 6.90e-15 | 68.9 |
| Msa0553210 | AT1G45050.1 | 33.036 | 112 | 73 | 2 | 24 | 134 | 7 | 117 | 1.39e-14 | 68.2 |
| Msa0553210 | AT2G32790.1 | 38.017 | 121 | 72 | 2 | 53 | 173 | 51 | 168 | 5.14e-14 | 67.0 |
| Msa0553210 | AT5G42990.1 | 33.036 | 112 | 73 | 2 | 24 | 134 | 7 | 117 | 6.24e-14 | 66.2 |
| Msa0553210 | AT4G36410.1 | 34.343 | 99 | 63 | 2 | 36 | 133 | 19 | 116 | 2.67e-13 | 64.7 |
| Msa0553210 | AT3G17000.1 | 32.743 | 113 | 67 | 3 | 34 | 141 | 13 | 121 | 9.01e-12 | 62.8 |
Find 48 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGATCACCTAAAACTAAA+TGG | 0.199370 | 4_1:-50149846 | None:intergenic |
| TTGACTTTAGGGGACTTAAA+AGG | 0.221429 | 4_1:-50149124 | None:intergenic |
| TTGTTTGTTTATAGGATAAA+TGG | 0.261888 | 4_1:+50149300 | Msa0553210:intron |
| CATCCCAATGTTGATCTTCA+TGG | 0.269716 | 4_1:+50149166 | Msa0553210:CDS |
| TCAGAGCATAACAAAATAAA+TGG | 0.271985 | 4_1:-50149865 | None:intergenic |
| GTAGTTTCAAACTTGACTTT+AGG | 0.334750 | 4_1:-50149136 | None:intergenic |
| CTGTCCATCCAAAGTCTTCT+TGG | 0.336173 | 4_1:+50149353 | Msa0553210:CDS |
| TAGTTTCAAACTTGACTTTA+GGG | 0.355376 | 4_1:-50149135 | None:intergenic |
| AGCATCAGTGTTCCCATTGA+TGG | 0.378850 | 4_1:-50147943 | None:intergenic |
| TTGTGGAAAGGAACAATAAC+AGG | 0.398479 | 4_1:+50149037 | Msa0553210:CDS |
| ATCCACAAGCAGCACAGCTT+TGG | 0.411990 | 4_1:+50149584 | Msa0553210:CDS |
| TATATGCTTGGACATACTTC+AGG | 0.420859 | 4_1:+50149192 | Msa0553210:CDS |
| GACTTAAAAGGGTAATCATT+AGG | 0.421604 | 4_1:-50149112 | None:intergenic |
| GTCTGAATTGATGTCTTTGA+TGG | 0.426742 | 4_1:+50148732 | Msa0553210:CDS |
| TGACTTTAGGGGACTTAAAA+GGG | 0.431721 | 4_1:-50149123 | None:intergenic |
| CTCCAAAGCTGTGCTGCTTG+TGG | 0.432715 | 4_1:-50149586 | None:intergenic |
| ATTCCACCTCTGTTCTCAAA+AGG | 0.440278 | 4_1:+50148021 | Msa0553210:CDS |
| TGTGCTGCTTGTGGATTTAG+TGG | 0.440911 | 4_1:-50149577 | None:intergenic |
| TTTAGTGGTGAACTAATGTT+TGG | 0.452232 | 4_1:-50149562 | None:intergenic |
| TGTCAGATGAGTGGTGAATC+TGG | 0.463249 | 4_1:+50148980 | Msa0553210:intron |
| GTCTACCTCCAAGAAGACTT+TGG | 0.472732 | 4_1:-50149361 | None:intergenic |
| AAGAATATGTTGTCTTCCTC+AGG | 0.473205 | 4_1:-50149016 | None:intergenic |
| TGGATCACCTAAAACTAAAT+GGG | 0.480653 | 4_1:-50149845 | None:intergenic |
| GTCGATTAAGCAGCAGCACT+TGG | 0.485768 | 4_1:-50149748 | None:intergenic |
| TTGTTAAAAGATTTCAGAAA+CGG | 0.488627 | 4_1:-50149894 | None:intergenic |
| ATCAACATTGGGATGGAAGC+AGG | 0.492019 | 4_1:-50149158 | None:intergenic |
| TTATACAGATTACAGAAAGA+TGG | 0.493470 | 4_1:+50149705 | Msa0553210:intron |
| TTGCCATGAAGATCAACATT+GGG | 0.507321 | 4_1:-50149169 | None:intergenic |
| TCTTCATGGCAATATATGCT+TGG | 0.513262 | 4_1:+50149180 | Msa0553210:CDS |
| GAGGTGGAATCAACGGACTT+AGG | 0.525977 | 4_1:-50148008 | None:intergenic |
| ACCTCCAAGAAGACTTTGGA+TGG | 0.537043 | 4_1:-50149357 | None:intergenic |
| AGCAAAGATACAGTGTTTGA+AGG | 0.544574 | 4_1:+50149061 | Msa0553210:CDS |
| TGATTATGACTGAATCGAAT+CGG | 0.546278 | 4_1:-50147903 | None:intergenic |
| TCCATCCAAAGTCTTCTTGG+AGG | 0.548893 | 4_1:+50149356 | Msa0553210:CDS |
| GTATCATTCAAGTTGGAGAA+AGG | 0.560360 | 4_1:+50149782 | Msa0553210:intron |
| GACAACATATTCTTGTGGAA+AGG | 0.561762 | 4_1:+50149025 | Msa0553210:CDS |
| ACGGACTTAGGAGGAGGAAG+AGG | 0.570689 | 4_1:-50147996 | None:intergenic |
| GAGAACAGAGGTGGAATCAA+CGG | 0.579252 | 4_1:-50148015 | None:intergenic |
| ATTGCCATGAAGATCAACAT+TGG | 0.588583 | 4_1:-50149170 | None:intergenic |
| TATGGAAGTGAAGAAGAAGA+TGG | 0.594221 | 4_1:-50147837 | None:intergenic |
| GAATCAACGGACTTAGGAGG+AGG | 0.597125 | 4_1:-50148002 | None:intergenic |
| AGGAAGACAACATATTCTTG+TGG | 0.600574 | 4_1:+50149020 | Msa0553210:CDS |
| GTGGAATCAACGGACTTAGG+AGG | 0.610762 | 4_1:-50148005 | None:intergenic |
| CAGCTTTGGAGCAATCAAGA+AGG | 0.619795 | 4_1:+50149598 | Msa0553210:CDS |
| AGTTTCAAACTTGACTTTAG+GGG | 0.633585 | 4_1:-50149134 | None:intergenic |
| TACAGATTACAGAAAGATGG+TGG | 0.634223 | 4_1:+50149708 | Msa0553210:intron |
| CATGAAGATCAACATTGGGA+TGG | 0.643434 | 4_1:-50149165 | None:intergenic |
| TGATTGGACTGTCAGATGAG+TGG | 0.670291 | 4_1:+50148971 | Msa0553210:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGAGAGATTTAATAAT+AGG | - | chr4_1:50148058-50148077 | None:intergenic | 15.0% |
| !! | ACAAATGACAATAATAATAA+GGG | - | chr4_1:50148630-50148649 | None:intergenic | 15.0% |
| !! | TACAAATGACAATAATAATA+AGG | - | chr4_1:50148631-50148650 | None:intergenic | 15.0% |
| !!! | TATATGTGTAAAACTATTTT+AGG | + | chr4_1:50149461-50149480 | Msa0553210:intron | 15.0% |
| !! | TAAAAAGTTAAAAAAGAGTT+AGG | - | chr4_1:50149531-50149550 | None:intergenic | 15.0% |
| !! | TAAAAGAGAGATTTAATAAT+AGG | - | chr4_1:50148058-50148077 | None:intergenic | 15.0% |
| !! | ACAAATGACAATAATAATAA+GGG | - | chr4_1:50148630-50148649 | None:intergenic | 15.0% |
| !! | TACAAATGACAATAATAATA+AGG | - | chr4_1:50148631-50148650 | None:intergenic | 15.0% |
| !!! | TATATGTGTAAAACTATTTT+AGG | + | chr4_1:50149461-50149480 | Msa0553210:intron | 15.0% |
| !! | TAAAAAGTTAAAAAAGAGTT+AGG | - | chr4_1:50149531-50149550 | None:intergenic | 15.0% |
| !! | AAGAAGAAGAAATGAAAATA+TGG | - | chr4_1:50147858-50147877 | None:intergenic | 20.0% |
| !!! | TCATAATCATTTGATTTTCA+TGG | + | chr4_1:50147917-50147936 | Msa0553210:exon | 20.0% |
| !! | TTGTTTGTTTGTTTGTTTAT+AGG | + | chr4_1:50149292-50149311 | Msa0553210:intron | 20.0% |
| !! | TTGTTTGTTTATAGGATAAA+TGG | + | chr4_1:50149300-50149319 | Msa0553210:intron | 20.0% |
| !!! | ACACTAATCTAATTTGTATA+CGG | - | chr4_1:50149493-50149512 | None:intergenic | 20.0% |
| !! | TTGTTAAAAGATTTCAGAAA+CGG | - | chr4_1:50149897-50149916 | None:intergenic | 20.0% |
| !! | AAGAAGAAGAAATGAAAATA+TGG | - | chr4_1:50147858-50147877 | None:intergenic | 20.0% |
| !!! | TCATAATCATTTGATTTTCA+TGG | + | chr4_1:50147917-50147936 | Msa0553210:exon | 20.0% |
| !! | TTGTTTGTTTGTTTGTTTAT+AGG | + | chr4_1:50149292-50149311 | Msa0553210:intron | 20.0% |
| !! | TTGTTTGTTTATAGGATAAA+TGG | + | chr4_1:50149300-50149319 | Msa0553210:intron | 20.0% |
| !!! | ACACTAATCTAATTTGTATA+CGG | - | chr4_1:50149493-50149512 | None:intergenic | 20.0% |
| !! | TTGTTAAAAGATTTCAGAAA+CGG | - | chr4_1:50149897-50149916 | None:intergenic | 20.0% |
| ! | ATCTTAATATATGATGTCGT+CGG | - | chr4_1:50148200-50148219 | None:intergenic | 25.0% |
| ! | TCATATATTAAGATGATCAG+TGG | + | chr4_1:50148206-50148225 | Msa0553210:intron | 25.0% |
| ! | CATATATTAAGATGATCAGT+GGG | + | chr4_1:50148207-50148226 | Msa0553210:intron | 25.0% |
| !! | TACAAAGAGTAAACTTTTTG+AGG | + | chr4_1:50148799-50148818 | Msa0553210:intron | 25.0% |
| ! | TCTAAACCTCAACAAAATTA+AGG | - | chr4_1:50148850-50148869 | None:intergenic | 25.0% |
| !!! | TGTTTTGCATTTTTTGTGAT+TGG | + | chr4_1:50148955-50148974 | Msa0553210:intron | 25.0% |
| ! | TAGTTTCAAACTTGACTTTA+GGG | - | chr4_1:50149138-50149157 | None:intergenic | 25.0% |
| ! | TTATACAGATTACAGAAAGA+TGG | + | chr4_1:50149705-50149724 | Msa0553210:intron | 25.0% |
| !!! | ATGAAAACCCATTTAGTTTT+AGG | + | chr4_1:50149838-50149857 | Msa0553210:three_prime_UTR | 25.0% |
| ! | TCAGAGCATAACAAAATAAA+TGG | - | chr4_1:50149868-50149887 | None:intergenic | 25.0% |
| ! | ATCTTAATATATGATGTCGT+CGG | - | chr4_1:50148200-50148219 | None:intergenic | 25.0% |
| ! | TCATATATTAAGATGATCAG+TGG | + | chr4_1:50148206-50148225 | Msa0553210:intron | 25.0% |
| ! | CATATATTAAGATGATCAGT+GGG | + | chr4_1:50148207-50148226 | Msa0553210:intron | 25.0% |
| !! | TACAAAGAGTAAACTTTTTG+AGG | + | chr4_1:50148799-50148818 | Msa0553210:intron | 25.0% |
| ! | TCTAAACCTCAACAAAATTA+AGG | - | chr4_1:50148850-50148869 | None:intergenic | 25.0% |
| !!! | TGTTTTGCATTTTTTGTGAT+TGG | + | chr4_1:50148955-50148974 | Msa0553210:intron | 25.0% |
| ! | TAGTTTCAAACTTGACTTTA+GGG | - | chr4_1:50149138-50149157 | None:intergenic | 25.0% |
| ! | TTATACAGATTACAGAAAGA+TGG | + | chr4_1:50149705-50149724 | Msa0553210:intron | 25.0% |
| !!! | ATGAAAACCCATTTAGTTTT+AGG | + | chr4_1:50149838-50149857 | Msa0553210:three_prime_UTR | 25.0% |
| ! | TCAGAGCATAACAAAATAAA+TGG | - | chr4_1:50149868-50149887 | None:intergenic | 25.0% |
| TGATTATGACTGAATCGAAT+CGG | - | chr4_1:50147906-50147925 | None:intergenic | 30.0% | |
| ATGTAGCAGTAACACATAAA+CGG | - | chr4_1:50148502-50148521 | None:intergenic | 30.0% | |
| ! | ACAATGTGCGAATGTAATTT+TGG | - | chr4_1:50148880-50148899 | None:intergenic | 30.0% |
| CATGTATTTAGCTAATAGTG+TGG | + | chr4_1:50148908-50148927 | Msa0553210:intron | 30.0% | |
| GACTTAAAAGGGTAATCATT+AGG | - | chr4_1:50149115-50149134 | None:intergenic | 30.0% | |
| AGTTTCAAACTTGACTTTAG+GGG | - | chr4_1:50149137-50149156 | None:intergenic | 30.0% | |
| GTAGTTTCAAACTTGACTTT+AGG | - | chr4_1:50149139-50149158 | None:intergenic | 30.0% | |
| AGGTAATGTGAAATCATCTA+AGG | + | chr4_1:50149212-50149231 | Msa0553210:intron | 30.0% | |
| !!! | ATTTGTTGTTGACCTTGTTT+TGG | + | chr4_1:50149250-50149269 | Msa0553210:intron | 30.0% |
| TTTAGTGGTGAACTAATGTT+TGG | - | chr4_1:50149565-50149584 | None:intergenic | 30.0% | |
| ACAAGACTCATAATGATTGA+AGG | - | chr4_1:50149631-50149650 | None:intergenic | 30.0% | |
| ! | AATCATTATGAGTCTTGTGA+CGG | + | chr4_1:50149633-50149652 | Msa0553210:intron | 30.0% |
| TGGATCACCTAAAACTAAAT+GGG | - | chr4_1:50149848-50149867 | None:intergenic | 30.0% | |
| ATGGATCACCTAAAACTAAA+TGG | - | chr4_1:50149849-50149868 | None:intergenic | 30.0% | |
| !! | TATTTTGTTATGCTCTGATG+TGG | + | chr4_1:50149870-50149889 | Msa0553210:three_prime_UTR | 30.0% |
| TGATTATGACTGAATCGAAT+CGG | - | chr4_1:50147906-50147925 | None:intergenic | 30.0% | |
| ATGTAGCAGTAACACATAAA+CGG | - | chr4_1:50148502-50148521 | None:intergenic | 30.0% | |
| ! | ACAATGTGCGAATGTAATTT+TGG | - | chr4_1:50148880-50148899 | None:intergenic | 30.0% |
| CATGTATTTAGCTAATAGTG+TGG | + | chr4_1:50148908-50148927 | Msa0553210:intron | 30.0% | |
| GACTTAAAAGGGTAATCATT+AGG | - | chr4_1:50149115-50149134 | None:intergenic | 30.0% | |
| AGTTTCAAACTTGACTTTAG+GGG | - | chr4_1:50149137-50149156 | None:intergenic | 30.0% | |
| GTAGTTTCAAACTTGACTTT+AGG | - | chr4_1:50149139-50149158 | None:intergenic | 30.0% | |
| AGGTAATGTGAAATCATCTA+AGG | + | chr4_1:50149212-50149231 | Msa0553210:intron | 30.0% | |
| !!! | ATTTGTTGTTGACCTTGTTT+TGG | + | chr4_1:50149250-50149269 | Msa0553210:intron | 30.0% |
| TTTAGTGGTGAACTAATGTT+TGG | - | chr4_1:50149565-50149584 | None:intergenic | 30.0% | |
| ACAAGACTCATAATGATTGA+AGG | - | chr4_1:50149631-50149650 | None:intergenic | 30.0% | |
| ! | AATCATTATGAGTCTTGTGA+CGG | + | chr4_1:50149633-50149652 | Msa0553210:intron | 30.0% |
| TGGATCACCTAAAACTAAAT+GGG | - | chr4_1:50149848-50149867 | None:intergenic | 30.0% | |
| ATGGATCACCTAAAACTAAA+TGG | - | chr4_1:50149849-50149868 | None:intergenic | 30.0% | |
| !! | TATTTTGTTATGCTCTGATG+TGG | + | chr4_1:50149870-50149889 | Msa0553210:three_prime_UTR | 30.0% |
| TATGGAAGTGAAGAAGAAGA+TGG | - | chr4_1:50147840-50147859 | None:intergenic | 35.0% | |
| ! | ATTTTCATGGCTACCATCAA+TGG | + | chr4_1:50147930-50147949 | Msa0553210:exon | 35.0% |
| ! | TTTTCATGGCTACCATCAAT+GGG | + | chr4_1:50147931-50147950 | Msa0553210:exon | 35.0% |
| !! | TGTTTTGTTGGAGCAACAAT+GGG | - | chr4_1:50147975-50147994 | None:intergenic | 35.0% |
| !! | TTGTTTTGTTGGAGCAACAA+TGG | - | chr4_1:50147976-50147995 | None:intergenic | 35.0% |
| CTTGTATGCATTCTTAGATG+AGG | + | chr4_1:50148240-50148259 | Msa0553210:intron | 35.0% | |
| !!! | TGTTGGCTTTTATGTCACTT+TGG | - | chr4_1:50148355-50148374 | None:intergenic | 35.0% |
| TGAAAAAACTAAGCTACACG+AGG | - | chr4_1:50148540-50148559 | None:intergenic | 35.0% | |
| !!! | AGGGTTTGCTAAGTAGTTTT+AGG | - | chr4_1:50148611-50148630 | None:intergenic | 35.0% |
| !!! | ACACGTTCTTTGTTTTGTGT+TGG | + | chr4_1:50148677-50148696 | Msa0553210:intron | 35.0% |
| GCTCAACACACAAATCAAAT+TGG | - | chr4_1:50148704-50148723 | None:intergenic | 35.0% | |
| GTCTGAATTGATGTCTTTGA+TGG | + | chr4_1:50148732-50148751 | Msa0553210:CDS | 35.0% | |
| AAGAATATGTTGTCTTCCTC+AGG | - | chr4_1:50149019-50149038 | None:intergenic | 35.0% | |
| AGGAAGACAACATATTCTTG+TGG | + | chr4_1:50149020-50149039 | Msa0553210:CDS | 35.0% | |
| GACAACATATTCTTGTGGAA+AGG | + | chr4_1:50149025-50149044 | Msa0553210:CDS | 35.0% | |
| TTGTGGAAAGGAACAATAAC+AGG | + | chr4_1:50149037-50149056 | Msa0553210:CDS | 35.0% | |
| AGCAAAGATACAGTGTTTGA+AGG | + | chr4_1:50149061-50149080 | Msa0553210:CDS | 35.0% | |
| ! | TGACTTTAGGGGACTTAAAA+GGG | - | chr4_1:50149126-50149145 | None:intergenic | 35.0% |
| ! | TTGACTTTAGGGGACTTAAA+AGG | - | chr4_1:50149127-50149146 | None:intergenic | 35.0% |
| TTGCCATGAAGATCAACATT+GGG | - | chr4_1:50149172-50149191 | None:intergenic | 35.0% | |
| ATTGCCATGAAGATCAACAT+TGG | - | chr4_1:50149173-50149192 | None:intergenic | 35.0% | |
| TCTTCATGGCAATATATGCT+TGG | + | chr4_1:50149180-50149199 | Msa0553210:CDS | 35.0% | |
| TATATGCTTGGACATACTTC+AGG | + | chr4_1:50149192-50149211 | Msa0553210:CDS | 35.0% | |
| TACAGATTACAGAAAGATGG+TGG | + | chr4_1:50149708-50149727 | Msa0553210:intron | 35.0% | |
| TTGAATGATACGACTTCCAA+AGG | - | chr4_1:50149773-50149792 | None:intergenic | 35.0% | |
| !! | GTATCATTCAAGTTGGAGAA+AGG | + | chr4_1:50149782-50149801 | Msa0553210:intron | 35.0% |
| TATGGAAGTGAAGAAGAAGA+TGG | - | chr4_1:50147840-50147859 | None:intergenic | 35.0% | |
| ! | ATTTTCATGGCTACCATCAA+TGG | + | chr4_1:50147930-50147949 | Msa0553210:exon | 35.0% |
| ! | TTTTCATGGCTACCATCAAT+GGG | + | chr4_1:50147931-50147950 | Msa0553210:exon | 35.0% |
| !! | TGTTTTGTTGGAGCAACAAT+GGG | - | chr4_1:50147975-50147994 | None:intergenic | 35.0% |
| !! | TTGTTTTGTTGGAGCAACAA+TGG | - | chr4_1:50147976-50147995 | None:intergenic | 35.0% |
| CTTGTATGCATTCTTAGATG+AGG | + | chr4_1:50148240-50148259 | Msa0553210:intron | 35.0% | |
| !!! | TGTTGGCTTTTATGTCACTT+TGG | - | chr4_1:50148355-50148374 | None:intergenic | 35.0% |
| TGAAAAAACTAAGCTACACG+AGG | - | chr4_1:50148540-50148559 | None:intergenic | 35.0% | |
| !!! | AGGGTTTGCTAAGTAGTTTT+AGG | - | chr4_1:50148611-50148630 | None:intergenic | 35.0% |
| !!! | ACACGTTCTTTGTTTTGTGT+TGG | + | chr4_1:50148677-50148696 | Msa0553210:intron | 35.0% |
| GCTCAACACACAAATCAAAT+TGG | - | chr4_1:50148704-50148723 | None:intergenic | 35.0% | |
| GTCTGAATTGATGTCTTTGA+TGG | + | chr4_1:50148732-50148751 | Msa0553210:CDS | 35.0% | |
| AAGAATATGTTGTCTTCCTC+AGG | - | chr4_1:50149019-50149038 | None:intergenic | 35.0% | |
| AGGAAGACAACATATTCTTG+TGG | + | chr4_1:50149020-50149039 | Msa0553210:CDS | 35.0% | |
| GACAACATATTCTTGTGGAA+AGG | + | chr4_1:50149025-50149044 | Msa0553210:CDS | 35.0% | |
| TTGTGGAAAGGAACAATAAC+AGG | + | chr4_1:50149037-50149056 | Msa0553210:CDS | 35.0% | |
| AGCAAAGATACAGTGTTTGA+AGG | + | chr4_1:50149061-50149080 | Msa0553210:CDS | 35.0% | |
| ! | TGACTTTAGGGGACTTAAAA+GGG | - | chr4_1:50149126-50149145 | None:intergenic | 35.0% |
| ! | TTGACTTTAGGGGACTTAAA+AGG | - | chr4_1:50149127-50149146 | None:intergenic | 35.0% |
| TTGCCATGAAGATCAACATT+GGG | - | chr4_1:50149172-50149191 | None:intergenic | 35.0% | |
| ATTGCCATGAAGATCAACAT+TGG | - | chr4_1:50149173-50149192 | None:intergenic | 35.0% | |
| TCTTCATGGCAATATATGCT+TGG | + | chr4_1:50149180-50149199 | Msa0553210:CDS | 35.0% | |
| TATATGCTTGGACATACTTC+AGG | + | chr4_1:50149192-50149211 | Msa0553210:CDS | 35.0% | |
| TACAGATTACAGAAAGATGG+TGG | + | chr4_1:50149708-50149727 | Msa0553210:intron | 35.0% | |
| TTGAATGATACGACTTCCAA+AGG | - | chr4_1:50149773-50149792 | None:intergenic | 35.0% | |
| !! | GTATCATTCAAGTTGGAGAA+AGG | + | chr4_1:50149782-50149801 | Msa0553210:intron | 35.0% |
| ATTCCACCTCTGTTCTCAAA+AGG | + | chr4_1:50148021-50148040 | Msa0553210:CDS | 40.0% | |
| !! | AAACCTTTTGAGAACAGAGG+TGG | - | chr4_1:50148027-50148046 | None:intergenic | 40.0% |
| !! | GAGAAACCTTTTGAGAACAG+AGG | - | chr4_1:50148030-50148049 | None:intergenic | 40.0% |
| !! | GATGATCAGTGGGTTTTTGT+TGG | + | chr4_1:50148217-50148236 | Msa0553210:intron | 40.0% |
| ACATGAACGGTATAAGGTGT+CGG | - | chr4_1:50148313-50148332 | None:intergenic | 40.0% | |
| ACACCTTATACCGTTCATGT+GGG | + | chr4_1:50148313-50148332 | Msa0553210:intron | 40.0% | |
| CGATCAGTGTGATCATTTGT+TGG | - | chr4_1:50148372-50148391 | None:intergenic | 40.0% | |
| ATCACACTGATCGTGATAGA+TGG | + | chr4_1:50148379-50148398 | Msa0553210:intron | 40.0% | |
| ! | GTGACGCCTTAATTTTGTTG+AGG | + | chr4_1:50148841-50148860 | Msa0553210:intron | 40.0% |
| !! | TGGTATATCTGCTTTTCCTG+AGG | + | chr4_1:50149000-50149019 | Msa0553210:CDS | 40.0% |
| CATGAAGATCAACATTGGGA+TGG | - | chr4_1:50149168-50149187 | None:intergenic | 40.0% | |
| CATCCCAATGTTGATCTTCA+TGG | + | chr4_1:50149166-50149185 | Msa0553210:CDS | 40.0% | |
| !!! | TTGTTGACCTTGTTTTGGCT+TGG | + | chr4_1:50149255-50149274 | Msa0553210:intron | 40.0% |
| GGAAGTCGTATCATTCAAGT+TGG | + | chr4_1:50149775-50149794 | Msa0553210:intron | 40.0% | |
| ATTCCACCTCTGTTCTCAAA+AGG | + | chr4_1:50148021-50148040 | Msa0553210:CDS | 40.0% | |
| !! | AAACCTTTTGAGAACAGAGG+TGG | - | chr4_1:50148027-50148046 | None:intergenic | 40.0% |
| !! | GAGAAACCTTTTGAGAACAG+AGG | - | chr4_1:50148030-50148049 | None:intergenic | 40.0% |
| !! | GATGATCAGTGGGTTTTTGT+TGG | + | chr4_1:50148217-50148236 | Msa0553210:intron | 40.0% |
| ACATGAACGGTATAAGGTGT+CGG | - | chr4_1:50148313-50148332 | None:intergenic | 40.0% | |
| ACACCTTATACCGTTCATGT+GGG | + | chr4_1:50148313-50148332 | Msa0553210:intron | 40.0% | |
| CGATCAGTGTGATCATTTGT+TGG | - | chr4_1:50148372-50148391 | None:intergenic | 40.0% | |
| ATCACACTGATCGTGATAGA+TGG | + | chr4_1:50148379-50148398 | Msa0553210:intron | 40.0% | |
| ! | GTGACGCCTTAATTTTGTTG+AGG | + | chr4_1:50148841-50148860 | Msa0553210:intron | 40.0% |
| !! | TGGTATATCTGCTTTTCCTG+AGG | + | chr4_1:50149000-50149019 | Msa0553210:CDS | 40.0% |
| CATGAAGATCAACATTGGGA+TGG | - | chr4_1:50149168-50149187 | None:intergenic | 40.0% | |
| CATCCCAATGTTGATCTTCA+TGG | + | chr4_1:50149166-50149185 | Msa0553210:CDS | 40.0% | |
| !!! | TTGTTGACCTTGTTTTGGCT+TGG | + | chr4_1:50149255-50149274 | Msa0553210:intron | 40.0% |
| GGAAGTCGTATCATTCAAGT+TGG | + | chr4_1:50149775-50149794 | Msa0553210:intron | 40.0% | |
| AGCATCAGTGTTCCCATTGA+TGG | - | chr4_1:50147946-50147965 | None:intergenic | 45.0% | |
| !! | GGAGGAAGAGGTTGTTTTGT+TGG | - | chr4_1:50147987-50148006 | None:intergenic | 45.0% |
| GAGAACAGAGGTGGAATCAA+CGG | - | chr4_1:50148018-50148037 | None:intergenic | 45.0% | |
| AGTTGCGTGATCCACATGAA+TGG | + | chr4_1:50148263-50148282 | Msa0553210:intron | 45.0% | |
| TGATCCACATGAATGGCACA+CGG | + | chr4_1:50148270-50148289 | Msa0553210:intron | 45.0% | |
| GACACCTTATACCGTTCATG+TGG | + | chr4_1:50148312-50148331 | Msa0553210:intron | 45.0% | |
| TGACCCACATGAACGGTATA+AGG | - | chr4_1:50148319-50148338 | None:intergenic | 45.0% | |
| TACCGTTCATGTGGGTCATT+CGG | + | chr4_1:50148321-50148340 | Msa0553210:intron | 45.0% | |
| TGATTGGACTGTCAGATGAG+TGG | + | chr4_1:50148971-50148990 | Msa0553210:intron | 45.0% | |
| TGTCAGATGAGTGGTGAATC+TGG | + | chr4_1:50148980-50148999 | Msa0553210:intron | 45.0% | |
| ATCAACATTGGGATGGAAGC+AGG | - | chr4_1:50149161-50149180 | None:intergenic | 45.0% | |
| CAGTATGCCAAGCCAAAACA+AGG | - | chr4_1:50149265-50149284 | None:intergenic | 45.0% | |
| CTGTCCATCCAAAGTCTTCT+TGG | + | chr4_1:50149353-50149372 | Msa0553210:CDS | 45.0% | |
| TCCATCCAAAGTCTTCTTGG+AGG | + | chr4_1:50149356-50149375 | Msa0553210:CDS | 45.0% | |
| ACCTCCAAGAAGACTTTGGA+TGG | - | chr4_1:50149360-50149379 | None:intergenic | 45.0% | |
| GTCTACCTCCAAGAAGACTT+TGG | - | chr4_1:50149364-50149383 | None:intergenic | 45.0% | |
| !! | TGTGCTGCTTGTGGATTTAG+TGG | - | chr4_1:50149580-50149599 | None:intergenic | 45.0% |
| !! | CAGCTTTGGAGCAATCAAGA+AGG | + | chr4_1:50149598-50149617 | Msa0553210:CDS | 45.0% |
| AGCATCAGTGTTCCCATTGA+TGG | - | chr4_1:50147946-50147965 | None:intergenic | 45.0% | |
| !! | GGAGGAAGAGGTTGTTTTGT+TGG | - | chr4_1:50147987-50148006 | None:intergenic | 45.0% |
| GAGAACAGAGGTGGAATCAA+CGG | - | chr4_1:50148018-50148037 | None:intergenic | 45.0% | |
| AGTTGCGTGATCCACATGAA+TGG | + | chr4_1:50148263-50148282 | Msa0553210:intron | 45.0% | |
| TGATCCACATGAATGGCACA+CGG | + | chr4_1:50148270-50148289 | Msa0553210:intron | 45.0% | |
| GACACCTTATACCGTTCATG+TGG | + | chr4_1:50148312-50148331 | Msa0553210:intron | 45.0% | |
| TGACCCACATGAACGGTATA+AGG | - | chr4_1:50148319-50148338 | None:intergenic | 45.0% | |
| TACCGTTCATGTGGGTCATT+CGG | + | chr4_1:50148321-50148340 | Msa0553210:intron | 45.0% | |
| TGATTGGACTGTCAGATGAG+TGG | + | chr4_1:50148971-50148990 | Msa0553210:intron | 45.0% | |
| TGTCAGATGAGTGGTGAATC+TGG | + | chr4_1:50148980-50148999 | Msa0553210:intron | 45.0% | |
| ATCAACATTGGGATGGAAGC+AGG | - | chr4_1:50149161-50149180 | None:intergenic | 45.0% | |
| CAGTATGCCAAGCCAAAACA+AGG | - | chr4_1:50149265-50149284 | None:intergenic | 45.0% | |
| CTGTCCATCCAAAGTCTTCT+TGG | + | chr4_1:50149353-50149372 | Msa0553210:CDS | 45.0% | |
| TCCATCCAAAGTCTTCTTGG+AGG | + | chr4_1:50149356-50149375 | Msa0553210:CDS | 45.0% | |
| ACCTCCAAGAAGACTTTGGA+TGG | - | chr4_1:50149360-50149379 | None:intergenic | 45.0% | |
| GTCTACCTCCAAGAAGACTT+TGG | - | chr4_1:50149364-50149383 | None:intergenic | 45.0% | |
| !! | TGTGCTGCTTGTGGATTTAG+TGG | - | chr4_1:50149580-50149599 | None:intergenic | 45.0% |
| !! | CAGCTTTGGAGCAATCAAGA+AGG | + | chr4_1:50149598-50149617 | Msa0553210:CDS | 45.0% |
| !! | AGAATATTAAAAAATAATTA+TGG | - | chr4_1:50148577-50148596 | None:intergenic | 5.0% |
| !! | AGAATATTAAAAAATAATTA+TGG | - | chr4_1:50148577-50148596 | None:intergenic | 5.0% |
| ! | GAATCAACGGACTTAGGAGG+AGG | - | chr4_1:50148005-50148024 | None:intergenic | 50.0% |
| ! | GTGGAATCAACGGACTTAGG+AGG | - | chr4_1:50148008-50148027 | None:intergenic | 50.0% |
| ! | GAGGTGGAATCAACGGACTT+AGG | - | chr4_1:50148011-50148030 | None:intergenic | 50.0% |
| ACCGTTCATGTGGGTCATTC+GGG | + | chr4_1:50148322-50148341 | Msa0553210:intron | 50.0% | |
| ACCCGAATGACCCACATGAA+CGG | - | chr4_1:50148326-50148345 | None:intergenic | 50.0% | |
| ATCCACAAGCAGCACAGCTT+TGG | + | chr4_1:50149584-50149603 | Msa0553210:CDS | 50.0% | |
| GTCGATTAAGCAGCAGCACT+TGG | - | chr4_1:50149751-50149770 | None:intergenic | 50.0% | |
| ! | GCTGCTGCTTAATCGACCTT+TGG | + | chr4_1:50149754-50149773 | Msa0553210:intron | 50.0% |
| ! | GAATCAACGGACTTAGGAGG+AGG | - | chr4_1:50148005-50148024 | None:intergenic | 50.0% |
| ! | GTGGAATCAACGGACTTAGG+AGG | - | chr4_1:50148008-50148027 | None:intergenic | 50.0% |
| ! | GAGGTGGAATCAACGGACTT+AGG | - | chr4_1:50148011-50148030 | None:intergenic | 50.0% |
| ACCGTTCATGTGGGTCATTC+GGG | + | chr4_1:50148322-50148341 | Msa0553210:intron | 50.0% | |
| ACCCGAATGACCCACATGAA+CGG | - | chr4_1:50148326-50148345 | None:intergenic | 50.0% | |
| ATCCACAAGCAGCACAGCTT+TGG | + | chr4_1:50149584-50149603 | Msa0553210:CDS | 50.0% | |
| GTCGATTAAGCAGCAGCACT+TGG | - | chr4_1:50149751-50149770 | None:intergenic | 50.0% | |
| ! | GCTGCTGCTTAATCGACCTT+TGG | + | chr4_1:50149754-50149773 | Msa0553210:intron | 50.0% |
| ACGGACTTAGGAGGAGGAAG+AGG | - | chr4_1:50147999-50148018 | None:intergenic | 55.0% | |
| ! | GACACCGTGTGCCATTCATG+TGG | - | chr4_1:50148277-50148296 | None:intergenic | 55.0% |
| !! | AGGTGTCGGTGCACTTTGCA+GGG | - | chr4_1:50148299-50148318 | None:intergenic | 55.0% |
| !! | AAGGTGTCGGTGCACTTTGC+AGG | - | chr4_1:50148300-50148319 | None:intergenic | 55.0% |
| !! | CTCCAAAGCTGTGCTGCTTG+TGG | - | chr4_1:50149589-50149608 | None:intergenic | 55.0% |
| ACGGACTTAGGAGGAGGAAG+AGG | - | chr4_1:50147999-50148018 | None:intergenic | 55.0% | |
| ! | GACACCGTGTGCCATTCATG+TGG | - | chr4_1:50148277-50148296 | None:intergenic | 55.0% |
| !! | AGGTGTCGGTGCACTTTGCA+GGG | - | chr4_1:50148299-50148318 | None:intergenic | 55.0% |
| !! | AAGGTGTCGGTGCACTTTGC+AGG | - | chr4_1:50148300-50148319 | None:intergenic | 55.0% |
| !! | CTCCAAAGCTGTGCTGCTTG+TGG | - | chr4_1:50149589-50149608 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 50147835 | 50149977 | 50147835 | ID=Msa0553210;Name=Msa0553210 |
| chr4_1 | mRNA | 50147835 | 50149977 | 50147835 | ID=Msa0553210-mRNA-1;Parent=Msa0553210;Name=Msa0553210-mRNA-1;_AED=0.22;_eAED=0.22;_QI=81|1|1|1|0.71|0.5|8|191|179 |
| chr4_1 | exon | 50147835 | 50147861 | 50147835 | ID=Msa0553210-mRNA-1:exon:14194;Parent=Msa0553210-mRNA-1 |
| chr4_1 | exon | 50147882 | 50148042 | 50147882 | ID=Msa0553210-mRNA-1:exon:14195;Parent=Msa0553210-mRNA-1 |
| chr4_1 | exon | 50148726 | 50148753 | 50148726 | ID=Msa0553210-mRNA-1:exon:14196;Parent=Msa0553210-mRNA-1 |
| chr4_1 | exon | 50148986 | 50149213 | 50148986 | ID=Msa0553210-mRNA-1:exon:14197;Parent=Msa0553210-mRNA-1 |
| chr4_1 | exon | 50149314 | 50149377 | 50149314 | ID=Msa0553210-mRNA-1:exon:14198;Parent=Msa0553210-mRNA-1 |
| chr4_1 | exon | 50149560 | 50149619 | 50149560 | ID=Msa0553210-mRNA-1:exon:14199;Parent=Msa0553210-mRNA-1 |
| chr4_1 | exon | 50149713 | 50149772 | 50149713 | ID=Msa0553210-mRNA-1:exon:14200;Parent=Msa0553210-mRNA-1 |
| chr4_1 | exon | 50149794 | 50149977 | 50149794 | ID=Msa0553210-mRNA-1:exon:14201;Parent=Msa0553210-mRNA-1 |
| chr4_1 | five_prime_UTR | 50147835 | 50147861 | 50147835 | ID=Msa0553210-mRNA-1:five_prime_utr;Parent=Msa0553210-mRNA-1 |
| chr4_1 | five_prime_UTR | 50147882 | 50147935 | 50147882 | ID=Msa0553210-mRNA-1:five_prime_utr;Parent=Msa0553210-mRNA-1 |
| chr4_1 | CDS | 50147936 | 50148042 | 50147936 | ID=Msa0553210-mRNA-1:cds;Parent=Msa0553210-mRNA-1 |
| chr4_1 | CDS | 50148726 | 50148753 | 50148726 | ID=Msa0553210-mRNA-1:cds;Parent=Msa0553210-mRNA-1 |
| chr4_1 | CDS | 50148986 | 50149213 | 50148986 | ID=Msa0553210-mRNA-1:cds;Parent=Msa0553210-mRNA-1 |
| chr4_1 | CDS | 50149314 | 50149377 | 50149314 | ID=Msa0553210-mRNA-1:cds;Parent=Msa0553210-mRNA-1 |
| chr4_1 | CDS | 50149560 | 50149619 | 50149560 | ID=Msa0553210-mRNA-1:cds;Parent=Msa0553210-mRNA-1 |
| chr4_1 | CDS | 50149713 | 50149765 | 50149713 | ID=Msa0553210-mRNA-1:cds;Parent=Msa0553210-mRNA-1 |
| chr4_1 | three_prime_UTR | 50149766 | 50149772 | 50149766 | ID=Msa0553210-mRNA-1:three_prime_utr;Parent=Msa0553210-mRNA-1 |
| chr4_1 | three_prime_UTR | 50149794 | 50149977 | 50149794 | ID=Msa0553210-mRNA-1:three_prime_utr;Parent=Msa0553210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
