Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752160 | XP_024639745.1 | 93.151 | 657 | 29 | 2 | 1 | 641 | 3 | 659 | 0.0 | 1262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752160 | sp|Q6JDV7|POLK_ARATH | 60.796 | 653 | 231 | 7 | 9 | 643 | 16 | 661 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752160 | A0A396HL96 | 93.151 | 657 | 29 | 2 | 1 | 641 | 3 | 659 | 0.0 | 1262 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0752160 | -0.805952 | 1.041166e-49 | -8.615850e-47 |
| Msa0040450 | Msa0752160 | 0.805530 | 1.276633e-49 | -8.615850e-47 |
| Msa0048000 | Msa0752160 | 0.821675 | 3.560002e-53 | -8.615850e-47 |
| Msa0077450 | Msa0752160 | 0.809906 | 1.500782e-50 | -8.615850e-47 |
| Msa0626280 | Msa0752160 | 0.805638 | 1.212105e-49 | -8.615850e-47 |
| Msa0638280 | Msa0752160 | 0.806801 | 6.895394e-50 | -8.615850e-47 |
| Msa0638320 | Msa0752160 | 0.808423 | 3.120037e-50 | -8.615850e-47 |
| Msa0657970 | Msa0752160 | 0.809701 | 1.661293e-50 | -8.615850e-47 |
| Msa0658570 | Msa0752160 | 0.824107 | 9.652898e-54 | -8.615850e-47 |
| Msa0677270 | Msa0752160 | 0.813216 | 2.863182e-51 | -8.615850e-47 |
| Msa0682550 | Msa0752160 | 0.811324 | 7.412403e-51 | -8.615850e-47 |
| Msa0689010 | Msa0752160 | 0.804941 | 1.696569e-49 | -8.615850e-47 |
| Msa0691380 | Msa0752160 | 0.807456 | 5.009136e-50 | -8.615850e-47 |
| Msa0692230 | Msa0752160 | 0.818984 | 1.473351e-52 | -8.615850e-47 |
| Msa0693380 | Msa0752160 | 0.856834 | 2.461412e-62 | -8.615850e-47 |
| Msa0703490 | Msa0752160 | 0.824095 | 9.718845e-54 | -8.615850e-47 |
| Msa0743680 | Msa0752160 | 0.800230 | 1.589010e-48 | -8.615850e-47 |
| Msa0752160 | Msa0754720 | -0.821912 | 3.137013e-53 | -8.615850e-47 |
| Msa0752160 | Msa0756530 | 0.800739 | 1.251178e-48 | -8.615850e-47 |
| Msa0752160 | Msa0756630 | -0.811668 | 6.240648e-51 | -8.615850e-47 |
| Msa0752160 | Msa0760380 | 0.813997 | 1.927603e-51 | -8.615850e-47 |
| Msa0752160 | Msa0816710 | 0.806060 | 9.880688e-50 | -8.615850e-47 |
| Msa0752160 | Msa0829620 | 0.844511 | 7.225917e-59 | -8.615850e-47 |
| Msa0752160 | Msa0840260 | 0.806080 | 9.787502e-50 | -8.615850e-47 |
| Msa0752160 | Msa0863800 | 0.815365 | 9.596058e-52 | -8.615850e-47 |
| Msa0752160 | Msa0867890 | 0.856133 | 3.953935e-62 | -8.615850e-47 |
| Msa0752160 | Msa0870530 | 0.809745 | 1.625931e-50 | -8.615850e-47 |
| Msa0752160 | Msa0891040 | 0.807696 | 4.456762e-50 | -8.615850e-47 |
| Msa0752160 | Msa0896750 | 0.808606 | 2.852179e-50 | -8.615850e-47 |
| Msa0752160 | Msa0903700 | 0.808824 | 2.562018e-50 | -8.615850e-47 |
| Msa0752160 | Msa0973150 | 0.808784 | 2.612597e-50 | -8.615850e-47 |
| Msa0752160 | Msa1000300 | 0.818868 | 1.566104e-52 | -8.615850e-47 |
| Msa0752160 | Msa1021510 | 0.803639 | 3.167153e-49 | -8.615850e-47 |
| Msa0752160 | Msa1027290 | 0.800208 | 1.605625e-48 | -8.615850e-47 |
| Msa0752160 | Msa1037700 | -0.806852 | 6.726463e-50 | -8.615850e-47 |
| Msa0752160 | Msa1068200 | -0.800236 | 1.584609e-48 | -8.615850e-47 |
| Msa0752160 | Msa1082500 | 0.835397 | 1.718254e-56 | -8.615850e-47 |
| Msa0752160 | Msa1085200 | 0.803907 | 2.785888e-49 | -8.615850e-47 |
| Msa0752160 | Msa1105500 | 0.800234 | 1.585544e-48 | -8.615850e-47 |
| Msa0752160 | Msa1111110 | 0.803138 | 4.021576e-49 | -8.615850e-47 |
| Msa0752160 | Msa1116130 | -0.801770 | 7.696095e-49 | -8.615850e-47 |
| Msa0752160 | Msa1130270 | -0.801665 | 8.088198e-49 | -8.615850e-47 |
| Msa0752160 | Msa1162550 | -0.808030 | 3.783146e-50 | -8.615850e-47 |
| Msa0752160 | Msa1162830 | 0.805425 | 1.343139e-49 | -8.615850e-47 |
| Msa0752160 | Msa1185540 | 0.800875 | 1.173525e-48 | -8.615850e-47 |
| Msa0752160 | Msa1228210 | 0.801779 | 7.666105e-49 | -8.615850e-47 |
| Msa0752160 | Msa1242650 | 0.804862 | 1.761858e-49 | -8.615850e-47 |
| Msa0752160 | Msa1308380 | 0.810082 | 1.375644e-50 | -8.615850e-47 |
| Msa0752160 | Msa1313150 | 0.802520 | 5.395832e-49 | -8.615850e-47 |
| Msa0752160 | Msa1314100 | 0.807882 | 4.068472e-50 | -8.615850e-47 |
| Msa0752160 | Msa1340260 | 0.806912 | 6.532929e-50 | -8.615850e-47 |
| Msa0752160 | Msa1340270 | 0.802377 | 5.774391e-49 | -8.615850e-47 |
| Msa0752160 | Msa1341570 | 0.802229 | 6.193125e-49 | -8.615850e-47 |
| Msa0752160 | Msa1343070 | 0.816511 | 5.326455e-52 | -8.615850e-47 |
| Msa0752160 | Msa1348880 | 0.808055 | 3.738298e-50 | -8.615850e-47 |
| Msa0752160 | Msa1364470 | -0.816344 | 5.803472e-52 | -8.615850e-47 |
| Msa0752160 | Msa1376890 | 0.818857 | 1.574712e-52 | -8.615850e-47 |
| Msa0752160 | Msa1384350 | 0.817948 | 2.530180e-52 | -8.615850e-47 |
| Msa0752160 | Msa1388450 | 0.806737 | 7.112104e-50 | -8.615850e-47 |
| Msa0752160 | Msa1390120 | 0.809412 | 1.917075e-50 | -8.615850e-47 |
| Msa0752160 | Msa1395530 | 0.808634 | 2.812351e-50 | -8.615850e-47 |
| Msa0752160 | Msa1402270 | 0.803753 | 2.998878e-49 | -8.615850e-47 |
| Msa0752160 | Msa1404540 | 0.833205 | 6.096228e-56 | -8.615850e-47 |
| Msa0752160 | Msa1409870 | 0.803753 | 2.999298e-49 | -8.615850e-47 |
| Msa0752160 | Msa1423880 | 0.828375 | 9.308920e-55 | -8.615850e-47 |
| Msa0752160 | Msa1424680 | 0.807645 | 4.569374e-50 | -8.615850e-47 |
| Msa0752160 | Msa1431060 | 0.824886 | 6.330829e-54 | -8.615850e-47 |
| Msa0752160 | Msa1435400 | 0.818582 | 1.817731e-52 | -8.615850e-47 |
| Msa0752160 | Msa1459180 | 0.826719 | 2.325468e-54 | -8.615850e-47 |
| Msa0124340 | Msa0752160 | 0.805962 | 1.036205e-49 | -8.615850e-47 |
| Msa0170140 | Msa0752160 | 0.816408 | 5.616368e-52 | -8.615850e-47 |
| Msa0191250 | Msa0752160 | 0.843657 | 1.224526e-58 | -8.615850e-47 |
| Msa0212310 | Msa0752160 | 0.819456 | 1.150581e-52 | -8.615850e-47 |
| Msa0217400 | Msa0752160 | 0.813882 | 2.044004e-51 | -8.615850e-47 |
| Msa0388960 | Msa0752160 | 0.813702 | 2.238660e-51 | -8.615850e-47 |
| Msa0389340 | Msa0752160 | 0.813891 | 2.034861e-51 | -8.615850e-47 |
| Msa0393680 | Msa0752160 | 0.806107 | 9.657877e-50 | -8.615850e-47 |
| Msa0395870 | Msa0752160 | 0.813050 | 3.114188e-51 | -8.615850e-47 |
| Msa0410650 | Msa0752160 | 0.809979 | 1.447863e-50 | -8.615850e-47 |
| Msa0423040 | Msa0752160 | 0.817604 | 3.025707e-52 | -8.615850e-47 |
| Msa0467960 | Msa0752160 | -0.819989 | 8.693416e-53 | -8.615850e-47 |
| Msa0246430 | Msa0752160 | 0.810237 | 1.273788e-50 | -8.615850e-47 |
| Msa0260810 | Msa0752160 | 0.824579 | 7.477402e-54 | -8.615850e-47 |
| Msa0270100 | Msa0752160 | 0.813790 | 2.141465e-51 | -8.615850e-47 |
| Msa0276920 | Msa0752160 | 0.825936 | 3.570762e-54 | -8.615850e-47 |
| Msa0283450 | Msa0752160 | 0.806361 | 8.538249e-50 | -8.615850e-47 |
| Msa0283520 | Msa0752160 | 0.807356 | 5.260788e-50 | -8.615850e-47 |
| Msa0296560 | Msa0752160 | 0.803714 | 3.054878e-49 | -8.615850e-47 |
| Msa0308550 | Msa0752160 | 0.813729 | 2.208793e-51 | -8.615850e-47 |
| Msa0311860 | Msa0752160 | 0.850195 | 1.987007e-60 | -8.615850e-47 |
| Msa0323180 | Msa0752160 | 0.801330 | 9.473609e-49 | -8.615850e-47 |
| Msa0332000 | Msa0752160 | 0.810446 | 1.148309e-50 | -8.615850e-47 |
| Msa0334350 | Msa0752160 | 0.810064 | 1.387733e-50 | -8.615850e-47 |
| Msa0335040 | Msa0752160 | 0.845607 | 3.655086e-59 | -8.615850e-47 |
| Msa0338110 | Msa0752160 | 0.807880 | 4.071257e-50 | -8.615850e-47 |
| Msa0356890 | Msa0752160 | -0.831095 | 2.027482e-55 | -8.615850e-47 |
| Msa0484780 | Msa0752160 | 0.840809 | 6.951697e-58 | -8.615850e-47 |
| Msa0507680 | Msa0752160 | 0.802796 | 4.733718e-49 | -8.615850e-47 |
| Msa0512870 | Msa0752160 | 0.808398 | 3.159153e-50 | -8.615850e-47 |
| Msa0547400 | Msa0752160 | 0.813483 | 2.502319e-51 | -8.615850e-47 |
| Msa0547760 | Msa0752160 | 0.805291 | 1.433177e-49 | -8.615850e-47 |
| Msa0558690 | Msa0752160 | 0.802635 | 5.110150e-49 | -8.615850e-47 |
| Msa0567020 | Msa0752160 | 0.839213 | 1.812751e-57 | -8.615850e-47 |
| Msa0572420 | Msa0752160 | 0.826272 | 2.971514e-54 | -8.615850e-47 |
| Msa0572480 | Msa0752160 | 0.804228 | 2.388694e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752160 | MtrunA17_Chr5g0393781 | 93.151 | 657 | 29 | 2 | 1 | 641 | 3 | 659 | 0.0 | 1262 |
| Msa0752160 | MtrunA17_Chr5g0393611 | 30.919 | 359 | 225 | 10 | 39 | 382 | 307 | 657 | 2.45e-35 | 144 |
| Msa0752160 | MtrunA17_Chr4g0052811 | 27.374 | 358 | 180 | 10 | 96 | 379 | 12 | 363 | 6.93e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752160 | AT1G49980.1 | 60.796 | 653 | 231 | 7 | 9 | 643 | 16 | 661 | 0.0 | 768 |
| Msa0752160 | AT1G49980.4 | 60.796 | 653 | 231 | 7 | 9 | 643 | 16 | 661 | 0.0 | 768 |
| Msa0752160 | AT1G49980.5 | 60.796 | 653 | 231 | 7 | 9 | 643 | 16 | 661 | 0.0 | 768 |
| Msa0752160 | AT1G49980.7 | 60.796 | 653 | 231 | 7 | 9 | 643 | 16 | 661 | 0.0 | 768 |
| Msa0752160 | AT1G49980.8 | 60.796 | 653 | 231 | 7 | 9 | 643 | 16 | 661 | 0.0 | 768 |
| Msa0752160 | AT1G49980.3 | 63.802 | 605 | 196 | 5 | 9 | 596 | 16 | 614 | 0.0 | 764 |
| Msa0752160 | AT1G49980.2 | 63.802 | 605 | 196 | 5 | 9 | 596 | 16 | 614 | 0.0 | 764 |
| Msa0752160 | AT1G49980.9 | 56.117 | 515 | 201 | 7 | 147 | 643 | 1 | 508 | 0.0 | 536 |
| Msa0752160 | AT1G49980.6 | 56.117 | 515 | 201 | 7 | 147 | 643 | 1 | 508 | 0.0 | 535 |
| Msa0752160 | AT5G44750.1 | 29.231 | 390 | 227 | 14 | 99 | 456 | 376 | 748 | 2.77e-32 | 134 |
| Msa0752160 | AT5G44750.2 | 29.442 | 394 | 225 | 15 | 99 | 456 | 376 | 752 | 4.73e-32 | 134 |
| Msa0752160 | AT5G44740.2 | 28.412 | 359 | 177 | 10 | 95 | 379 | 11 | 363 | 1.42e-26 | 115 |
| Msa0752160 | AT5G44740.1 | 29.534 | 193 | 119 | 4 | 202 | 379 | 89 | 279 | 2.44e-14 | 77.0 |
| Msa0752160 | AT5G44740.3 | 29.534 | 193 | 119 | 4 | 202 | 379 | 106 | 296 | 3.78e-14 | 76.3 |
Find 129 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTCATTCTGAAAATATT+TGG | 0.125767 | 5_2:-5780615 | None:intergenic |
| ATCATTTCCTGACAATAATT+AGG | 0.155981 | 5_2:-5784433 | None:intergenic |
| TTTATACAGGCCAGGAAATT+TGG | 0.195002 | 5_2:+5781078 | Msa0752160:intron |
| TTTAAGTAACCCTATGTTAA+AGG | 0.210169 | 5_2:+5780931 | Msa0752160:CDS |
| TACTCTGTGGGTTTAGGTTT+GGG | 0.229231 | 5_2:+5782871 | Msa0752160:CDS |
| TTCTCCTGAAGTAATGAAAT+TGG | 0.259914 | 5_2:-5783934 | None:intergenic |
| CCCGCGACCTTTCAAGGATT+TGG | 0.268935 | 5_2:+5780867 | Msa0752160:CDS |
| TTCCCTTCAGCTTGATGTTT+GGG | 0.275081 | 5_2:-5785962 | None:intergenic |
| TCATTTCCTGACAATAATTA+GGG | 0.281010 | 5_2:-5784432 | None:intergenic |
| GGAGTTCGTTCTGCCATGCC+TGG | 0.295650 | 5_2:+5781099 | Msa0752160:CDS |
| TTTGAAGCAACTCAGCAAAA+TGG | 0.296723 | 5_2:-5784546 | None:intergenic |
| ATTACCAAAGCTCCACTCTT+TGG | 0.298690 | 5_2:+5784102 | Msa0752160:CDS |
| TTACTCTGTGGGTTTAGGTT+TGG | 0.301255 | 5_2:+5782870 | Msa0752160:CDS |
| TTTCCCTTCAGCTTGATGTT+TGG | 0.303090 | 5_2:-5785963 | None:intergenic |
| CCTGTTTCAGTACGATTAAT+AGG | 0.312775 | 5_2:+5783679 | Msa0752160:CDS |
| GACGGAACAAACCTCATAAT+TGG | 0.313970 | 5_2:-5780996 | None:intergenic |
| ATTACCAATTTCATTACTTC+AGG | 0.328953 | 5_2:+5783930 | Msa0752160:CDS |
| CCTATTAATCGTACTGAAAC+AGG | 0.360995 | 5_2:-5783679 | None:intergenic |
| ATTCTCCCCAAGCAAGATTT+CGG | 0.366592 | 5_2:+5782902 | Msa0752160:CDS |
| GTCAGGAAATGATAATGTTT+TGG | 0.369048 | 5_2:+5784443 | Msa0752160:CDS |
| AAGCTTCCCGCGACCTTTCA+AGG | 0.369769 | 5_2:+5780861 | Msa0752160:CDS |
| CACTAAACTGTGATACTCTA+AGG | 0.372191 | 5_2:-5783866 | None:intergenic |
| GAATTTCATCGCTGGTAGTC+TGG | 0.379435 | 5_2:+5781298 | Msa0752160:CDS |
| GGTAAAATATACTGTCCATT+TGG | 0.386191 | 5_2:-5782228 | None:intergenic |
| GTATACTTGTTGAAATCAAC+TGG | 0.388510 | 5_2:-5781162 | None:intergenic |
| TTAAGTAACCCTATGTTAAA+GGG | 0.398161 | 5_2:+5780932 | Msa0752160:CDS |
| ATTGGCCTGCCCTTTAACAT+AGG | 0.399508 | 5_2:-5780941 | None:intergenic |
| TACAGTGATTTGACCAGAAA+AGG | 0.401634 | 5_2:+5781189 | Msa0752160:CDS |
| AGAACGAACTCCAAATTTCC+TGG | 0.407264 | 5_2:-5781088 | None:intergenic |
| GATATCCACTGCCAATTATG+AGG | 0.408271 | 5_2:+5780985 | Msa0752160:CDS |
| GATTTGGTTACATGTAGATA+TGG | 0.415193 | 5_2:+5780883 | Msa0752160:CDS |
| GAAACTGATCTTTCCCTTGA+CGG | 0.420296 | 5_2:+5784017 | Msa0752160:CDS |
| TTACTTCAGGAGAAGCCAAT+AGG | 0.428131 | 5_2:+5783943 | Msa0752160:CDS |
| AGACTACCAGCGATGAAATT+CGG | 0.430802 | 5_2:-5781296 | None:intergenic |
| ATGTGAGCAGATGCTGGATA+AGG | 0.432320 | 5_2:+5782506 | Msa0752160:CDS |
| ATAACAGCCAAGCGGTCATT+TGG | 0.439647 | 5_2:-5782249 | None:intergenic |
| AATCTTTCCTCAACAAAACT+TGG | 0.440500 | 5_2:-5784508 | None:intergenic |
| ATTTGCTTTGTCTATTGATT+CGG | 0.443390 | 5_2:-5784760 | None:intergenic |
| TTGGTGAAATTGAAATGAAT+GGG | 0.445538 | 5_2:+5780427 | Msa0752160:five_prime_UTR |
| GAGTTCGTTCTGCCATGCCT+GGG | 0.453647 | 5_2:+5781100 | Msa0752160:CDS |
| AACAAATGATTACCATCAAA+AGG | 0.462445 | 5_2:-5784071 | None:intergenic |
| ATAGTCTTCTGTGTAGGATC+AGG | 0.476314 | 5_2:-5783909 | None:intergenic |
| TCTATTCCTTCTGTGAATGA+AGG | 0.481533 | 5_2:-5785988 | None:intergenic |
| AATAACGAGGAGAGAGGAAA+GGG | 0.485793 | 5_2:+5780397 | Msa0752160:five_prime_UTR |
| GAGAGGAAAGGGTTGAGTGT+TGG | 0.487455 | 5_2:+5780408 | Msa0752160:five_prime_UTR |
| ACCGAATCGCTTACTTGCTA+AGG | 0.488096 | 5_2:+5781530 | Msa0752160:CDS |
| TGATAAAAGAATTCTTGAAC+TGG | 0.493707 | 5_2:+5780838 | Msa0752160:CDS |
| GAATAATGGGTCTAATCTCC+TGG | 0.493841 | 5_2:+5784399 | Msa0752160:CDS |
| TCATTTATCACATTATCAAA+AGG | 0.496560 | 5_2:+5780706 | Msa0752160:CDS |
| GTGATAAATGAGAGTGTGTA+AGG | 0.497680 | 5_2:-5780694 | None:intergenic |
| CTTTCCTCAACAAAACTTGG+AGG | 0.498930 | 5_2:-5784505 | None:intergenic |
| TGTGAGCAGATGCTGGATAA+GGG | 0.498978 | 5_2:+5782507 | Msa0752160:CDS |
| TTGGCCTGCCCTTTAACATA+GGG | 0.499608 | 5_2:-5780940 | None:intergenic |
| GTTGGTGAAATTGAAATGAA+TGG | 0.501933 | 5_2:+5780426 | Msa0752160:five_prime_UTR |
| CTCAAACAGACCTTTCTGAT+AGG | 0.502889 | 5_2:-5782291 | None:intergenic |
| AAGCACATGTGAGCAGATGC+TGG | 0.504634 | 5_2:+5782500 | Msa0752160:CDS |
| CACTAGCGCGAAAGCAGGAA+TGG | 0.504927 | 5_2:+5780538 | Msa0752160:CDS |
| AACAGACCTTTCTGATAGGA+AGG | 0.506790 | 5_2:-5782287 | None:intergenic |
| ACCAAATCCTTGAAAGGTCG+CGG | 0.509328 | 5_2:-5780868 | None:intergenic |
| ATCTGTGTGCCTACCGTCAA+GGG | 0.510405 | 5_2:-5784030 | None:intergenic |
| TGCAAACTTCAGTTATATCA+AGG | 0.514648 | 5_2:-5781331 | None:intergenic |
| TGATAGCCCTAATTATTGTC+AGG | 0.515465 | 5_2:+5784426 | Msa0752160:CDS |
| GAAAGAGAAGACGGCGATGG+AGG | 0.516067 | 5_2:+5780475 | Msa0752160:exon |
| AAAGAGAAGACGGCGATGGA+GGG | 0.516358 | 5_2:+5780476 | Msa0752160:exon |
| GTGAAATTGAAATGAATGGG+GGG | 0.518365 | 5_2:+5780430 | Msa0752160:five_prime_UTR |
| GGAGACTCTGCACAAGGATG+TGG | 0.525148 | 5_2:+5785910 | Msa0752160:CDS |
| ACCTTAGCAAGTAAGCGATT+CGG | 0.530222 | 5_2:-5781531 | None:intergenic |
| ACTGGTCTCACATGTAGTGC+TGG | 0.531695 | 5_2:+5781501 | Msa0752160:CDS |
| ATGCAACAACGCTTCATCCT+CGG | 0.531850 | 5_2:-5782959 | None:intergenic |
| CCATGCCTGGGTTTATTGCA+CGG | 0.534158 | 5_2:+5781112 | Msa0752160:CDS |
| ACTGGAACAAAGATTAACTC+TGG | 0.536947 | 5_2:-5781144 | None:intergenic |
| CATGTAACCAAATCCTTGAA+AGG | 0.537054 | 5_2:-5780874 | None:intergenic |
| AATTAGGGCTATCATCCTCC+AGG | 0.540562 | 5_2:-5784417 | None:intergenic |
| TGAAATTGAAATGAATGGGG+GGG | 0.542065 | 5_2:+5780431 | Msa0752160:five_prime_UTR |
| GACATGGTGCCAACAGCCAT+TGG | 0.549036 | 5_2:-5780959 | None:intergenic |
| TTGGTAATAGTCTTCTGTGT+AGG | 0.555664 | 5_2:-5783915 | None:intergenic |
| TATGTTAAAGGGCAGGCCAA+TGG | 0.557242 | 5_2:+5780943 | Msa0752160:CDS |
| GAAAACTGATGGTGCAGAGA+AGG | 0.558906 | 5_2:+5784124 | Msa0752160:CDS |
| TTTGAATCAGAACAGATGCT+TGG | 0.559665 | 5_2:-5784588 | None:intergenic |
| AAGCATCTGTTCTGATTCAA+AGG | 0.560610 | 5_2:+5784590 | Msa0752160:CDS |
| GTAACCCTATGTTAAAGGGC+AGG | 0.561428 | 5_2:+5780936 | Msa0752160:CDS |
| GGGTTTAGGTTTGGGAAAGA+CGG | 0.563053 | 5_2:+5782879 | Msa0752160:CDS |
| ACAAGAAGAGAAAGAGAAGA+CGG | 0.563902 | 5_2:+5780466 | Msa0752160:five_prime_UTR |
| GTTTACACTAGCGCGAAAGC+AGG | 0.568256 | 5_2:+5780533 | Msa0752160:CDS |
| CTTCCCAAACATCAAGCTGA+AGG | 0.568478 | 5_2:+5785959 | Msa0752160:CDS |
| AGAGAAAGAGAAGACGGCGA+TGG | 0.568663 | 5_2:+5780472 | Msa0752160:exon |
| ATTGTTTATGAAATGAGCAA+AGG | 0.569888 | 5_2:+5780590 | Msa0752160:CDS |
| CTTAGAGTATCACAGTTTAG+TGG | 0.571256 | 5_2:+5783867 | Msa0752160:CDS |
| ACAAACCTCATAATTGGCAG+TGG | 0.574002 | 5_2:-5780990 | None:intergenic |
| TCCACTCTTTGGAAAACTGA+TGG | 0.575363 | 5_2:+5784113 | Msa0752160:CDS |
| ATCCTCCCTTCCTATCAGAA+AGG | 0.575436 | 5_2:+5782281 | Msa0752160:CDS |
| CTGATCTTTCCCTTGACGGT+AGG | 0.579399 | 5_2:+5784021 | Msa0752160:CDS |
| AGCGCGAAAGCAGGAATGGA+AGG | 0.585360 | 5_2:+5780542 | Msa0752160:CDS |
| ATTATATAACTCAAAAGTTG+AGG | 0.585760 | 5_2:+5785889 | Msa0752160:CDS |
| TCAGACATAAACAAGCCAAA+TGG | 0.586732 | 5_2:+5782213 | Msa0752160:CDS |
| CCAAATCCTTGAAAGGTCGC+GGG | 0.587318 | 5_2:-5780867 | None:intergenic |
| TCTCACATGTAGTGCTGGAG+TGG | 0.588105 | 5_2:+5781506 | Msa0752160:CDS |
| GATCTGTGTGCCTACCGTCA+AGG | 0.594862 | 5_2:-5784031 | None:intergenic |
| AAGGGCAGGCCAATGGCTGT+TGG | 0.602052 | 5_2:+5780950 | Msa0752160:CDS |
| GAAAGACCTTCATTCACAGA+AGG | 0.602872 | 5_2:+5785982 | Msa0752160:CDS |
| CAAAAGTTGTCTCACAAGGA+GGG | 0.606022 | 5_2:+5784791 | Msa0752160:CDS |
| TATGATCCGAATTTCATCGC+TGG | 0.611918 | 5_2:+5781290 | Msa0752160:CDS |
| AAATAACGAGGAGAGAGGAA+AGG | 0.613110 | 5_2:+5780396 | Msa0752160:five_prime_UTR |
| TTCCCAAACATCAAGCTGAA+GGG | 0.613364 | 5_2:+5785960 | Msa0752160:CDS |
| GACTATAAATGTTCACTCTG+TGG | 0.619008 | 5_2:+5784472 | Msa0752160:CDS |
| GACCTTTCTGATAGGAAGGG+AGG | 0.620126 | 5_2:-5782283 | None:intergenic |
| GTCGGCGTTTATGAAGAGAC+TGG | 0.621129 | 5_2:+5781483 | Msa0752160:CDS |
| CCGTGCAATAAACCCAGGCA+TGG | 0.621698 | 5_2:-5781112 | None:intergenic |
| GAAGCAAAAGTTGTCTCACA+AGG | 0.626097 | 5_2:+5784787 | Msa0752160:CDS |
| GCAAAAGTTGTCTCACAAGG+AGG | 0.627588 | 5_2:+5784790 | Msa0752160:CDS |
| AGCTTCCGTGCAATAAACCC+AGG | 0.632231 | 5_2:-5781117 | None:intergenic |
| ACAGACCTTTCTGATAGGAA+GGG | 0.643641 | 5_2:-5782286 | None:intergenic |
| GGCAGTGGATATCATAGACA+TGG | 0.648981 | 5_2:-5780975 | None:intergenic |
| GGAAAAGTATCAGTAATGAG+AGG | 0.653557 | 5_2:+5782923 | Msa0752160:CDS |
| TGGTGAAATTGAAATGAATG+GGG | 0.660017 | 5_2:+5780428 | Msa0752160:five_prime_UTR |
| AGGGAAGCGATGATAATCGA+TGG | 0.664709 | 5_2:+5780495 | Msa0752160:CDS |
| ATTGCTCAAGAAATCAGAGT+CGG | 0.667415 | 5_2:+5781465 | Msa0752160:CDS |
| CAGTTTAGTGGACAAAAGTG+TGG | 0.667576 | 5_2:+5783879 | Msa0752160:CDS |
| CTGTATCAGTGACAAAGTCG+TGG | 0.672041 | 5_2:-5783995 | None:intergenic |
| AGTTGAGGAGACTCTGCACA+AGG | 0.675667 | 5_2:+5785904 | Msa0752160:CDS |
| GATGCAATGCATGAGACTGA+CGG | 0.688313 | 5_2:-5785866 | None:intergenic |
| TAACCACAGTGGATGTACAG+AGG | 0.705399 | 5_2:+5784330 | Msa0752160:CDS |
| GGTGAAATTGAAATGAATGG+GGG | 0.706066 | 5_2:+5780429 | Msa0752160:five_prime_UTR |
| CAACAACGCTTCATCCTCGG+TGG | 0.707283 | 5_2:-5782956 | None:intergenic |
| TAATGGGTCTAATCTCCTGG+AGG | 0.709202 | 5_2:+5784402 | Msa0752160:CDS |
| TGAAAGTCATAACAGCCAAG+CGG | 0.719674 | 5_2:-5782257 | None:intergenic |
| TGATAGTGTTGACAGATTGG+GGG | 0.759194 | 5_2:+5782432 | Msa0752160:intron |
| GAACCTCTGTACATCCACTG+TGG | 0.781808 | 5_2:-5784333 | None:intergenic |
| GATGCAAGTTCTAACCACAG+TGG | 0.797600 | 5_2:+5784319 | Msa0752160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAACTTCTTAATTT+AGG | + | chr5_2:5780768-5780787 | Msa0752160:intron | 10.0% |
| !! | ATTAATAACTTCTTAATTTA+GGG | + | chr5_2:5780769-5780788 | Msa0752160:intron | 10.0% |
| !! | ATAATTTCTATTTGTAATTA+CGG | + | chr5_2:5785059-5785078 | Msa0752160:intron | 10.0% |
| !! | CAAAAATCAATAAATTAATA+AGG | - | chr5_2:5785446-5785465 | None:intergenic | 10.0% |
| !!! | TATTAATTTATTGATTTTTG+TGG | + | chr5_2:5785446-5785465 | Msa0752160:intron | 10.0% |
| !!! | TATAAAAAAAATACCTTTTC+TGG | - | chr5_2:5781205-5781224 | None:intergenic | 15.0% |
| !!! | AAGGTATTTTTTTTATATTC+TGG | + | chr5_2:5781208-5781227 | Msa0752160:intron | 15.0% |
| !!! | TTTTTAAATGAAATACATTG+AGG | + | chr5_2:5781685-5781704 | Msa0752160:intron | 15.0% |
| !! | AAAATTATATAAAAGGTAAC+TGG | - | chr5_2:5781845-5781864 | None:intergenic | 15.0% |
| !! | GGCTAAAAAAATTATATAAA+AGG | - | chr5_2:5781852-5781871 | None:intergenic | 15.0% |
| !!! | ATAATTTTCTGATTATGATA+AGG | + | chr5_2:5783401-5783420 | Msa0752160:intron | 15.0% |
| !! | ATTATGATAAGGTAAATTAT+TGG | + | chr5_2:5783412-5783431 | Msa0752160:intron | 15.0% |
| !!! | TCATTTTCTAAAAGAAATAT+TGG | + | chr5_2:5785680-5785699 | Msa0752160:intron | 15.0% |
| !! | TCATTTATCACATTATCAAA+AGG | + | chr5_2:5780706-5780725 | Msa0752160:CDS | 20.0% |
| !!! | ATTTTTAAAGGGAAAAAAAG+AGG | - | chr5_2:5781434-5781453 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTCCCTTTAAAAA+TGG | + | chr5_2:5781433-5781452 | Msa0752160:intron | 20.0% |
| !!! | CTACATATTCCATTTTTAAA+GGG | - | chr5_2:5781445-5781464 | None:intergenic | 20.0% |
| !!! | TCTACATATTCCATTTTTAA+AGG | - | chr5_2:5781446-5781465 | None:intergenic | 20.0% |
| !! | CATGATAAAATGAAAAAAAC+TGG | - | chr5_2:5781768-5781787 | None:intergenic | 20.0% |
| !! | ATTTACTAGATAACACTAAA+AGG | + | chr5_2:5781935-5781954 | Msa0752160:intron | 20.0% |
| !! | TTTACTAGATAACACTAAAA+GGG | + | chr5_2:5781936-5781955 | Msa0752160:intron | 20.0% |
| !!! | AGCTTTGTGTTAAAATATAT+AGG | + | chr5_2:5781972-5781991 | Msa0752160:intron | 20.0% |
| !! | GCCAGTTATTATAAAATTAT+TGG | + | chr5_2:5782334-5782353 | Msa0752160:intron | 20.0% |
| !!! | GCCAATAATTTTATAATAAC+TGG | - | chr5_2:5782338-5782357 | None:intergenic | 20.0% |
| !!! | TCAATCACTTTTAATTAGAA+AGG | - | chr5_2:5782415-5782434 | None:intergenic | 20.0% |
| !!! | TTTTTTCAGCATCATTTAAA+TGG | + | chr5_2:5782595-5782614 | Msa0752160:intron | 20.0% |
| !!! | TTTTCAAAATAGACATTAGA+AGG | - | chr5_2:5782666-5782685 | None:intergenic | 20.0% |
| !! | AAATGTCATATGTTAAAAGA+AGG | - | chr5_2:5782827-5782846 | None:intergenic | 20.0% |
| !!! | TCAGTTATTTTTTATCTTTC+AGG | + | chr5_2:5783004-5783023 | Msa0752160:intron | 20.0% |
| !!! | CAGTTATTTTTTATCTTTCA+GGG | + | chr5_2:5783005-5783024 | Msa0752160:intron | 20.0% |
| !!! | ATTGAAAATTTGAAATCTAC+CGG | - | chr5_2:5783035-5783054 | None:intergenic | 20.0% |
| !! | AGGAAAAAAATGTGAATAAT+GGG | + | chr5_2:5784386-5784405 | Msa0752160:CDS | 20.0% |
| !! | CTAACAAAAAAATGATCAAT+GGG | - | chr5_2:5784827-5784846 | None:intergenic | 20.0% |
| !!! | CATTGATCATTTTTTTGTTA+GGG | + | chr5_2:5784826-5784845 | Msa0752160:intron | 20.0% |
| !! | AGATTATTAGCCAATAATAA+CGG | - | chr5_2:5784899-5784918 | None:intergenic | 20.0% |
| !! | CAAACAAATAGAATAAGTTT+AGG | - | chr5_2:5785368-5785387 | None:intergenic | 20.0% |
| !!! | TAATTTATTGATTTTTGTGG+TGG | + | chr5_2:5785449-5785468 | Msa0752160:intron | 20.0% |
| !!! | AATTTATTGATTTTTGTGGT+GGG | + | chr5_2:5785450-5785469 | Msa0752160:intron | 20.0% |
| !! | TTTAATATAATCACATGTGT+CGG | - | chr5_2:5785655-5785674 | None:intergenic | 20.0% |
| !! | ATTATATAACTCAAAAGTTG+AGG | + | chr5_2:5785889-5785908 | Msa0752160:CDS | 20.0% |
| ! | TTGGTGAAATTGAAATGAAT+GGG | + | chr5_2:5780427-5780446 | Msa0752160:five_prime_UTR | 25.0% |
| !! | TTGACAAAGAAAAAGTACAA+AGG | + | chr5_2:5780567-5780586 | Msa0752160:CDS | 25.0% |
| ! | ATTGTTTATGAAATGAGCAA+AGG | + | chr5_2:5780590-5780609 | Msa0752160:CDS | 25.0% |
| !! | ATCCAAATATTTTCAGAATG+AGG | + | chr5_2:5780613-5780632 | Msa0752160:CDS | 25.0% |
| !! | TTCCTCATTCTGAAAATATT+TGG | - | chr5_2:5780618-5780637 | None:intergenic | 25.0% |
| !! | AATATTTTCAGAATGAGGAA+CGG | + | chr5_2:5780618-5780637 | Msa0752160:CDS | 25.0% |
| ! | TGATAAAAGAATTCTTGAAC+TGG | + | chr5_2:5780838-5780857 | Msa0752160:CDS | 25.0% |
| ! | TTTAAGTAACCCTATGTTAA+AGG | + | chr5_2:5780931-5780950 | Msa0752160:CDS | 25.0% |
| ! | TTAAGTAACCCTATGTTAAA+GGG | + | chr5_2:5780932-5780951 | Msa0752160:CDS | 25.0% |
| ! | TGAAGCTTATAATATATCGA+CGG | - | chr5_2:5781017-5781036 | None:intergenic | 25.0% |
| !! | GTTTTTCCTTTAATTACTGA+TGG | + | chr5_2:5781230-5781249 | Msa0752160:intron | 25.0% |
| ! | AAGAGGTTTAATACATTTGA+AGG | - | chr5_2:5781417-5781436 | None:intergenic | 25.0% |
| ! | AATAAAAAGAAAACACCAAG+TGG | - | chr5_2:5781666-5781685 | None:intergenic | 25.0% |
| ! | TAAATGAAATACATTGAGGA+AGG | + | chr5_2:5781689-5781708 | Msa0752160:intron | 25.0% |
| ! | TGGAAAACAGAAAATCATAA+AGG | - | chr5_2:5781748-5781767 | None:intergenic | 25.0% |
| !! | AGATATACAGGTAAAAGTTT+TGG | - | chr5_2:5781873-5781892 | None:intergenic | 25.0% |
| ! | ATGTACAAGTTATCCAAATT+GGG | - | chr5_2:5781912-5781931 | None:intergenic | 25.0% |
| ! | AATGTACAAGTTATCCAAAT+TGG | - | chr5_2:5781913-5781932 | None:intergenic | 25.0% |
| ! | TTACTAGATAACACTAAAAG+GGG | + | chr5_2:5781937-5781956 | Msa0752160:intron | 25.0% |
| !! | TATGTTTATGTCTTTGAAAG+AGG | + | chr5_2:5782387-5782406 | Msa0752160:intron | 25.0% |
| !! | GTAAGTTTAGCTTCATATAA+AGG | + | chr5_2:5782733-5782752 | Msa0752160:intron | 25.0% |
| ! | CTAAGAAATACACAATCTAT+AGG | + | chr5_2:5783567-5783586 | Msa0752160:intron | 25.0% |
| ! | AAATACACAATCTATAGGTT+CGG | + | chr5_2:5783572-5783591 | Msa0752160:intron | 25.0% |
| ! | CCAACAATAAAACAAGTTAA+CGG | - | chr5_2:5783714-5783733 | None:intergenic | 25.0% |
| !!! | TTAACTTGTTTTATTGTTGG+CGG | + | chr5_2:5783714-5783733 | Msa0752160:intron | 25.0% |
| ! | ATTACCAATTTCATTACTTC+AGG | + | chr5_2:5783930-5783949 | Msa0752160:CDS | 25.0% |
| !!! | AAAAGAACTACTTTTCCTAT+TGG | - | chr5_2:5783961-5783980 | None:intergenic | 25.0% |
| ! | AACAAATGATTACCATCAAA+AGG | - | chr5_2:5784074-5784093 | None:intergenic | 25.0% |
| ! | ATCGCTACTTAGAAAAATAA+GGG | - | chr5_2:5784168-5784187 | None:intergenic | 25.0% |
| ! | TATCGCTACTTAGAAAAATA+AGG | - | chr5_2:5784169-5784188 | None:intergenic | 25.0% |
| ! | AATTAGTAATGCGTAAACAT+TGG | - | chr5_2:5784252-5784271 | None:intergenic | 25.0% |
| ! | GAGGAAAAAAATGTGAATAA+TGG | + | chr5_2:5784385-5784404 | Msa0752160:CDS | 25.0% |
| ! | TCATTTCCTGACAATAATTA+GGG | - | chr5_2:5784435-5784454 | None:intergenic | 25.0% |
| ! | ATCATTTCCTGACAATAATT+AGG | - | chr5_2:5784436-5784455 | None:intergenic | 25.0% |
| ! | TTACAATTGCAACAAAATAG+TGG | + | chr5_2:5784647-5784666 | Msa0752160:intron | 25.0% |
| ! | TACAATTGCAACAAAATAGT+GGG | + | chr5_2:5784648-5784667 | Msa0752160:intron | 25.0% |
| !! | ATTTGCTTTGTCTATTGATT+CGG | - | chr5_2:5784763-5784782 | None:intergenic | 25.0% |
| ! | CCTAACAAAAAAATGATCAA+TGG | - | chr5_2:5784828-5784847 | None:intergenic | 25.0% |
| !!! | CCATTGATCATTTTTTTGTT+AGG | + | chr5_2:5784825-5784844 | Msa0752160:intron | 25.0% |
| ! | TAAAATAGAGAAACTCATTG+AGG | + | chr5_2:5785109-5785128 | Msa0752160:intron | 25.0% |
| ! | AAAATAGAGAAACTCATTGA+GGG | + | chr5_2:5785110-5785129 | Msa0752160:intron | 25.0% |
| ! | AATAGTCTTTGCTTTAATTC+AGG | - | chr5_2:5785137-5785156 | None:intergenic | 25.0% |
| !! | TTTTATTCAAACAGACTCAA+AGG | + | chr5_2:5785181-5785200 | Msa0752160:intron | 25.0% |
| ! | TTTATTCAAACAGACTCAAA+GGG | + | chr5_2:5785182-5785201 | Msa0752160:intron | 25.0% |
| ! | AGTTCGAAATTGTGAATAAA+AGG | - | chr5_2:5785222-5785241 | None:intergenic | 25.0% |
| ! | TCACAACAACAAGTAAATAA+AGG | + | chr5_2:5785257-5785276 | Msa0752160:intron | 25.0% |
| !!! | ATTTATTGATTTTTGTGGTG+GGG | + | chr5_2:5785451-5785470 | Msa0752160:intron | 25.0% |
| ! | CTAATAATGAAGAATACTGT+TGG | + | chr5_2:5785769-5785788 | Msa0752160:intron | 25.0% |
| !! | AAATGATGGAAAACAAAAAG+AGG | + | chr5_2:5785797-5785816 | Msa0752160:intron | 25.0% |
| ! | GTTGGTGAAATTGAAATGAA+TGG | + | chr5_2:5780426-5780445 | Msa0752160:five_prime_UTR | 30.0% |
| TGGTGAAATTGAAATGAATG+GGG | + | chr5_2:5780428-5780447 | Msa0752160:five_prime_UTR | 30.0% | |
| ! | GAATTCTTTTATCAGCAATC+TGG | - | chr5_2:5780832-5780851 | None:intergenic | 30.0% |
| ! | GATTTGGTTACATGTAGATA+TGG | + | chr5_2:5780883-5780902 | Msa0752160:CDS | 30.0% |
| ! | ATCTCCTTTTGTCTTTATAC+AGG | + | chr5_2:5781065-5781084 | Msa0752160:intron | 30.0% |
| ! | GTATACTTGTTGAAATCAAC+TGG | - | chr5_2:5781165-5781184 | None:intergenic | 30.0% |
| AAGCTACCATCAGTAATTAA+AGG | - | chr5_2:5781239-5781258 | None:intergenic | 30.0% | |
| TGCAAACTTCAGTTATATCA+AGG | - | chr5_2:5781334-5781353 | None:intergenic | 30.0% | |
| CTGTCAGATTAAAATTGCAA+TGG | + | chr5_2:5781388-5781407 | Msa0752160:intron | 30.0% | |
| ! | TGTTGTTGATTGAGATATAC+AGG | - | chr5_2:5781885-5781904 | None:intergenic | 30.0% |
| GGTAAAATATACTGTCCATT+TGG | - | chr5_2:5782231-5782250 | None:intergenic | 30.0% | |
| !! | ATTGATAGTGTTGACAGATT+GGG | + | chr5_2:5782430-5782449 | Msa0752160:intron | 30.0% |
| !! | CGTATTTTGAAGGAAGTTTT+TGG | + | chr5_2:5782474-5782493 | Msa0752160:CDS | 30.0% |
| !!! | TGCAGATTTTTTTTACTCTG+TGG | + | chr5_2:5782858-5782877 | Msa0752160:intron | 30.0% |
| !!! | GCAGATTTTTTTTACTCTGT+GGG | + | chr5_2:5782859-5782878 | Msa0752160:intron | 30.0% |
| !!! | TTTTTTTACTCTGTGGGTTT+AGG | + | chr5_2:5782865-5782884 | Msa0752160:CDS | 30.0% |
| ! | TTTTATCTTTCAGGGAATTC+CGG | + | chr5_2:5783013-5783032 | Msa0752160:intron | 30.0% |
| GATTTGCATGGTTCATTTAT+TGG | - | chr5_2:5783245-5783264 | None:intergenic | 30.0% | |
| ! | ATAAGGTAAATTATTGGCCT+GGG | + | chr5_2:5783418-5783437 | Msa0752160:intron | 30.0% |
| !!! | CCGTTAACTTGTTTTATTGT+TGG | + | chr5_2:5783711-5783730 | Msa0752160:intron | 30.0% |
| AATTATTAAGATGGTCCTCA+AGG | + | chr5_2:5783738-5783757 | Msa0752160:intron | 30.0% | |
| !!! | TATTTTTTTCTTCCCCTCTT+AGG | + | chr5_2:5783843-5783862 | Msa0752160:intron | 30.0% |
| TTCTCCTGAAGTAATGAAAT+TGG | - | chr5_2:5783937-5783956 | None:intergenic | 30.0% | |
| ! | CAGCAATCAAATGATTGTTT+TGG | + | chr5_2:5784210-5784229 | Msa0752160:intron | 30.0% |
| !! | GTCAGGAAATGATAATGTTT+TGG | + | chr5_2:5784443-5784462 | Msa0752160:CDS | 30.0% |
| !!! | GGAAATGATAATGTTTTGGT+TGG | + | chr5_2:5784447-5784466 | Msa0752160:CDS | 30.0% |
| AATCTTTCCTCAACAAAACT+TGG | - | chr5_2:5784511-5784530 | None:intergenic | 30.0% | |
| ATTGTAAAAACCACGACAAA+TGG | - | chr5_2:5784634-5784653 | None:intergenic | 30.0% | |
| ! | GACTTCACATTTTCTGTTTA+AGG | + | chr5_2:5784691-5784710 | Msa0752160:intron | 30.0% |
| GTAATCAAAGCTTATGATGT+TGG | + | chr5_2:5784850-5784869 | Msa0752160:intron | 30.0% | |
| TGTAGCATAAACTCAACATA+TGG | + | chr5_2:5784873-5784892 | Msa0752160:intron | 30.0% | |
| AAGCAAAGACTATTAGAACA+AGG | + | chr5_2:5785143-5785162 | Msa0752160:intron | 30.0% | |
| AGCAAAGACTATTAGAACAA+GGG | + | chr5_2:5785144-5785163 | Msa0752160:intron | 30.0% | |
| TTATTCAAACAGACTCAAAG+GGG | + | chr5_2:5785183-5785202 | Msa0752160:intron | 30.0% | |
| !! | ATTTACTTGTTGTTGTGAGA+TGG | - | chr5_2:5785255-5785274 | None:intergenic | 30.0% |
| TGATATCTTAATGAGTGGTT+AGG | - | chr5_2:5785330-5785349 | None:intergenic | 30.0% | |
| ACGATTGATATCTTAATGAG+TGG | - | chr5_2:5785335-5785354 | None:intergenic | 30.0% | |
| ATGCCTTTAATAGGAATTGT+TGG | - | chr5_2:5785493-5785512 | None:intergenic | 30.0% | |
| ATGACATCATGTAATCACAT+GGG | - | chr5_2:5785545-5785564 | None:intergenic | 30.0% | |
| AATGACATCATGTAATCACA+TGG | - | chr5_2:5785546-5785565 | None:intergenic | 30.0% | |
| !! | AAATATTGGTATTGACGTGT+TGG | + | chr5_2:5785694-5785713 | Msa0752160:intron | 30.0% |
| GGTGAAATTGAAATGAATGG+GGG | + | chr5_2:5780429-5780448 | Msa0752160:five_prime_UTR | 35.0% | |
| GTGAAATTGAAATGAATGGG+GGG | + | chr5_2:5780430-5780449 | Msa0752160:five_prime_UTR | 35.0% | |
| TGAAATTGAAATGAATGGGG+GGG | + | chr5_2:5780431-5780450 | Msa0752160:five_prime_UTR | 35.0% | |
| ACAAGAAGAGAAAGAGAAGA+CGG | + | chr5_2:5780466-5780485 | Msa0752160:five_prime_UTR | 35.0% | |
| ! | GTGATAAATGAGAGTGTGTA+AGG | - | chr5_2:5780697-5780716 | None:intergenic | 35.0% |
| CATGTAACCAAATCCTTGAA+AGG | - | chr5_2:5780877-5780896 | None:intergenic | 35.0% | |
| TTTATACAGGCCAGGAAATT+TGG | + | chr5_2:5781078-5781097 | Msa0752160:intron | 35.0% | |
| ACTGGAACAAAGATTAACTC+TGG | - | chr5_2:5781147-5781166 | None:intergenic | 35.0% | |
| TACAGTGATTTGACCAGAAA+AGG | + | chr5_2:5781189-5781208 | Msa0752160:CDS | 35.0% | |
| !!! | CATGTTCGTTAGTTTTTCAG+AGG | + | chr5_2:5781267-5781286 | Msa0752160:intron | 35.0% |
| ATTGCTCAAGAAATCAGAGT+CGG | + | chr5_2:5781465-5781484 | Msa0752160:CDS | 35.0% | |
| TGCCAAACATATTTCCCATA+TGG | + | chr5_2:5781567-5781586 | Msa0752160:intron | 35.0% | |
| GCCAAACATATTTCCCATAT+GGG | + | chr5_2:5781568-5781587 | Msa0752160:intron | 35.0% | |
| ACCCATATGGGAAATATGTT+TGG | - | chr5_2:5781572-5781591 | None:intergenic | 35.0% | |
| CTAGCAAATGTAACCCATAT+GGG | - | chr5_2:5781584-5781603 | None:intergenic | 35.0% | |
| ACTAGCAAATGTAACCCATA+TGG | - | chr5_2:5781585-5781604 | None:intergenic | 35.0% | |
| GAGATGTTAAGAGAGAATTG+AGG | - | chr5_2:5781813-5781832 | None:intergenic | 35.0% | |
| AAAAGGTAACTGGCACAATT+AGG | - | chr5_2:5781835-5781854 | None:intergenic | 35.0% | |
| TCAACAACAGTTACCCAATT+TGG | + | chr5_2:5781896-5781915 | Msa0752160:intron | 35.0% | |
| ATAACACTAAAAGGGGTGAT+TGG | + | chr5_2:5781944-5781963 | Msa0752160:intron | 35.0% | |
| TAACACTAAAAGGGGTGATT+GGG | + | chr5_2:5781945-5781964 | Msa0752160:intron | 35.0% | |
| !!! | TCCTTGTTTTGCATTGTATG+TGG | + | chr5_2:5782010-5782029 | Msa0752160:intron | 35.0% |
| ACCACATACAATGCAAAACA+AGG | - | chr5_2:5782014-5782033 | None:intergenic | 35.0% | |
| TAGTGATTGTTTGATCACCT+GGG | + | chr5_2:5782136-5782155 | Msa0752160:intron | 35.0% | |
| TCATAGTATGAAATTTCCCC+AGG | - | chr5_2:5782156-5782175 | None:intergenic | 35.0% | |
| ! | TTGACATTTTGCTCTCCTAT+AGG | + | chr5_2:5782185-5782204 | Msa0752160:intron | 35.0% |
| TTATGTCTGAGCAAACCTAT+AGG | - | chr5_2:5782203-5782222 | None:intergenic | 35.0% | |
| TCAGACATAAACAAGCCAAA+TGG | + | chr5_2:5782213-5782232 | Msa0752160:CDS | 35.0% | |
| ! | TATTTTACCAAATGACCGCT+TGG | + | chr5_2:5782242-5782261 | Msa0752160:CDS | 35.0% |
| !! | GATTGATAGTGTTGACAGAT+TGG | + | chr5_2:5782429-5782448 | Msa0752160:intron | 35.0% |
| !! | TTGATAGTGTTGACAGATTG+GGG | + | chr5_2:5782431-5782450 | Msa0752160:intron | 35.0% |
| !! | GGTTACTGAACGTATTTTGA+AGG | + | chr5_2:5782464-5782483 | Msa0752160:CDS | 35.0% |
| ! | TGTATGAACATTAGTCTAGC+TGG | - | chr5_2:5782621-5782640 | None:intergenic | 35.0% |
| AAATTCTGTCTTCCACTTTC+TGG | + | chr5_2:5782683-5782702 | Msa0752160:intron | 35.0% | |
| TGGTTTCTACAACCAGTATT+TGG | + | chr5_2:5782703-5782722 | Msa0752160:intron | 35.0% | |
| CTTACAAACATGCCAAATAC+TGG | - | chr5_2:5782718-5782737 | None:intergenic | 35.0% | |
| ! | ACTTTTCCGAAATCTTGCTT+GGG | - | chr5_2:5782911-5782930 | None:intergenic | 35.0% |
| ! | TACTTTTCCGAAATCTTGCT+TGG | - | chr5_2:5782912-5782931 | None:intergenic | 35.0% |
| !! | GGAAAAGTATCAGTAATGAG+AGG | + | chr5_2:5782923-5782942 | Msa0752160:CDS | 35.0% |
| AGCGTTGTTGCATCAAAAAT+TGG | + | chr5_2:5782969-5782988 | Msa0752160:CDS | 35.0% | |
| GCGTTGTTGCATCAAAAATT+GGG | + | chr5_2:5782970-5782989 | Msa0752160:CDS | 35.0% | |
| ATTGCAGTTCATCAGTTTGA+AGG | + | chr5_2:5783067-5783086 | Msa0752160:intron | 35.0% | |
| GTCTCAGATTTAGTCAGTTT+AGG | + | chr5_2:5783116-5783135 | Msa0752160:intron | 35.0% | |
| CTGCAAACATAAGATTTGCA+TGG | - | chr5_2:5783257-5783276 | None:intergenic | 35.0% | |
| TGCAAATCTTATGTTTGCAG+CGG | + | chr5_2:5783257-5783276 | Msa0752160:intron | 35.0% | |
| ! | ACTGAAAACTGCTTCTTTTG+AGG | + | chr5_2:5783347-5783366 | Msa0752160:CDS | 35.0% |
| GATAAGGTAAATTATTGGCC+TGG | + | chr5_2:5783417-5783436 | Msa0752160:intron | 35.0% | |
| ! | TAATGAAGCTTTATCCACAG+AGG | - | chr5_2:5783446-5783465 | None:intergenic | 35.0% |
| !! | TATGATTTGTTCAAGTCCCT+TGG | + | chr5_2:5783483-5783502 | Msa0752160:intron | 35.0% |
| !! | ATGATTTGTTCAAGTCCCTT+GGG | + | chr5_2:5783484-5783503 | Msa0752160:intron | 35.0% |
| TAGCACTTGCAAGAGAAATA+TGG | - | chr5_2:5783550-5783569 | None:intergenic | 35.0% | |
| CCTATTAATCGTACTGAAAC+AGG | - | chr5_2:5783682-5783701 | None:intergenic | 35.0% | |
| CCTGTTTCAGTACGATTAAT+AGG | + | chr5_2:5783679-5783698 | Msa0752160:CDS | 35.0% | |
| CACTAAACTGTGATACTCTA+AGG | - | chr5_2:5783869-5783888 | None:intergenic | 35.0% | |
| ! | CTTAGAGTATCACAGTTTAG+TGG | + | chr5_2:5783867-5783886 | Msa0752160:CDS | 35.0% |
| ! | TTGGTAATAGTCTTCTGTGT+AGG | - | chr5_2:5783918-5783937 | None:intergenic | 35.0% |
| AGAAAAATAAGGGTGGAGAA+TGG | - | chr5_2:5784158-5784177 | None:intergenic | 35.0% | |
| GCTACTTAGAAAAATAAGGG+TGG | - | chr5_2:5784165-5784184 | None:intergenic | 35.0% | |
| !!! | ATGATTGTTTTGGCTGATTG+AGG | + | chr5_2:5784220-5784239 | Msa0752160:intron | 35.0% |
| TGATAGCCCTAATTATTGTC+AGG | + | chr5_2:5784426-5784445 | Msa0752160:CDS | 35.0% | |
| GACTATAAATGTTCACTCTG+TGG | + | chr5_2:5784472-5784491 | Msa0752160:CDS | 35.0% | |
| ! | TTTGAAGCAACTCAGCAAAA+TGG | - | chr5_2:5784549-5784568 | None:intergenic | 35.0% |
| ! | TTTTGCTGAGTTGCTTCAAA+AGG | + | chr5_2:5784549-5784568 | Msa0752160:CDS | 35.0% |
| TTTGAATCAGAACAGATGCT+TGG | - | chr5_2:5784591-5784610 | None:intergenic | 35.0% | |
| AAGCATCTGTTCTGATTCAA+AGG | + | chr5_2:5784590-5784609 | Msa0752160:CDS | 35.0% | |
| CAACATATGGCCGTTATTAT+TGG | + | chr5_2:5784886-5784905 | Msa0752160:intron | 35.0% | |
| TGTGTACAATGAAGACAATG+CGG | - | chr5_2:5785026-5785045 | None:intergenic | 35.0% | |
| TCTTAATGAGTGGTTAGGTT+AGG | - | chr5_2:5785325-5785344 | None:intergenic | 35.0% | |
| CAATACATAGTTTCGCTTAG+AGG | - | chr5_2:5785402-5785421 | None:intergenic | 35.0% | |
| TAATAAGGACATGAGCAGAA+TGG | - | chr5_2:5785431-5785450 | None:intergenic | 35.0% | |
| GCACCAACAATTCCTATTAA+AGG | + | chr5_2:5785487-5785506 | Msa0752160:intron | 35.0% | |
| ! | TTCCTATTAAAGGCATGTCT+CGG | + | chr5_2:5785497-5785516 | Msa0752160:intron | 35.0% |
| CACATACAACAGACATAACA+CGG | - | chr5_2:5785723-5785742 | None:intergenic | 35.0% | |
| TACTGTTGGTGCAAAAATGA+TGG | + | chr5_2:5785783-5785802 | Msa0752160:intron | 35.0% | |
| TGATGGAAAACAAAAAGAGG+CGG | + | chr5_2:5785800-5785819 | Msa0752160:intron | 35.0% | |
| AAATAACGAGGAGAGAGGAA+AGG | + | chr5_2:5780396-5780415 | Msa0752160:five_prime_UTR | 40.0% | |
| AATAACGAGGAGAGAGGAAA+GGG | + | chr5_2:5780397-5780416 | Msa0752160:five_prime_UTR | 40.0% | |
| GAAATTGAAATGAATGGGGG+GGG | + | chr5_2:5780432-5780451 | Msa0752160:five_prime_UTR | 40.0% | |
| AAATTGAAATGAATGGGGGG+GGG | + | chr5_2:5780433-5780452 | Msa0752160:five_prime_UTR | 40.0% | |
| GATATCCACTGCCAATTATG+AGG | + | chr5_2:5780985-5781004 | Msa0752160:CDS | 40.0% | |
| ACAAACCTCATAATTGGCAG+TGG | - | chr5_2:5780993-5781012 | None:intergenic | 40.0% | |
| GACGGAACAAACCTCATAAT+TGG | - | chr5_2:5780999-5781018 | None:intergenic | 40.0% | |
| CTGGCCTGTATAAAGACAAA+AGG | - | chr5_2:5781072-5781091 | None:intergenic | 40.0% | |
| ! | CTTTTGTCTTTATACAGGCC+AGG | + | chr5_2:5781070-5781089 | Msa0752160:intron | 40.0% |
| AGAACGAACTCCAAATTTCC+TGG | - | chr5_2:5781091-5781110 | None:intergenic | 40.0% | |
| TATGATCCGAATTTCATCGC+TGG | + | chr5_2:5781290-5781309 | Msa0752160:CDS | 40.0% | |
| AGACTACCAGCGATGAAATT+CGG | - | chr5_2:5781299-5781318 | None:intergenic | 40.0% | |
| ACCTTAGCAAGTAAGCGATT+CGG | - | chr5_2:5781534-5781553 | None:intergenic | 40.0% | |
| AAGTAACGCATGTGGATGTA+AGG | - | chr5_2:5781634-5781653 | None:intergenic | 40.0% | |
| ACTGCACTTGCACATTAATC+AGG | + | chr5_2:5781714-5781733 | Msa0752160:intron | 40.0% | |
| GTAGTGATTGTTTGATCACC+TGG | + | chr5_2:5782135-5782154 | Msa0752160:intron | 40.0% | |
| AGTGATTGTTTGATCACCTG+GGG | + | chr5_2:5782137-5782156 | Msa0752160:intron | 40.0% | |
| TGAAAGTCATAACAGCCAAG+CGG | - | chr5_2:5782260-5782279 | None:intergenic | 40.0% | |
| ACAGACCTTTCTGATAGGAA+GGG | - | chr5_2:5782289-5782308 | None:intergenic | 40.0% | |
| AACAGACCTTTCTGATAGGA+AGG | - | chr5_2:5782290-5782309 | None:intergenic | 40.0% | |
| CTCAAACAGACCTTTCTGAT+AGG | - | chr5_2:5782294-5782313 | None:intergenic | 40.0% | |
| !! | TGATAGTGTTGACAGATTGG+GGG | + | chr5_2:5782432-5782451 | Msa0752160:intron | 40.0% |
| !!! | CTTTTTTCTCAGTCAACAGC+AGG | + | chr5_2:5782546-5782565 | Msa0752160:CDS | 40.0% |
| TGGTTGTAGAAACCAGAAAG+TGG | - | chr5_2:5782698-5782717 | None:intergenic | 40.0% | |
| ! | TTACTCTGTGGGTTTAGGTT+TGG | + | chr5_2:5782870-5782889 | Msa0752160:CDS | 40.0% |
| ! | TACTCTGTGGGTTTAGGTTT+GGG | + | chr5_2:5782871-5782890 | Msa0752160:CDS | 40.0% |
| ATTCTCCCCAAGCAAGATTT+CGG | + | chr5_2:5782902-5782921 | Msa0752160:CDS | 40.0% | |
| ! | CTTTTCCGAAATCTTGCTTG+GGG | - | chr5_2:5782910-5782929 | None:intergenic | 40.0% |
| !! | TGCAGTTTGTTACACATGCA+TGG | + | chr5_2:5783140-5783159 | Msa0752160:intron | 40.0% |
| ATCCACAGACATGCAAAAAG+AGG | + | chr5_2:5783296-5783315 | Msa0752160:CDS | 40.0% | |
| TCCACAGACATGCAAAAAGA+GGG | + | chr5_2:5783297-5783316 | Msa0752160:CDS | 40.0% | |
| !! | TGATTTGTTCAAGTCCCTTG+GGG | + | chr5_2:5783485-5783504 | Msa0752160:intron | 40.0% |
| GTTGGCGGCAATTATTAAGA+TGG | + | chr5_2:5783729-5783748 | Msa0752160:intron | 40.0% | |
| TCCTCAAGGCCAATATAAGA+GGG | + | chr5_2:5783752-5783771 | Msa0752160:intron | 40.0% | |
| CAGCAAGAACCCTCTTATAT+TGG | - | chr5_2:5783764-5783783 | None:intergenic | 40.0% | |
| CATGTGTTCCTTGTCTAAGT+TGG | + | chr5_2:5783809-5783828 | Msa0752160:intron | 40.0% | |
| GTTATGCACCAACTTAGACA+AGG | - | chr5_2:5783820-5783839 | None:intergenic | 40.0% | |
| !! | TGATACTCTAAGGCCTAAGA+GGG | - | chr5_2:5783859-5783878 | None:intergenic | 40.0% |
| ! | CAGTTTAGTGGACAAAAGTG+TGG | + | chr5_2:5783879-5783898 | Msa0752160:CDS | 40.0% |
| ATAGTCTTCTGTGTAGGATC+AGG | - | chr5_2:5783912-5783931 | None:intergenic | 40.0% | |
| TTACTTCAGGAGAAGCCAAT+AGG | + | chr5_2:5783943-5783962 | Msa0752160:CDS | 40.0% | |
| GAAACTGATCTTTCCCTTGA+CGG | + | chr5_2:5784017-5784036 | Msa0752160:CDS | 40.0% | |
| ! | GATAGCAGAGATCCTTTTGA+TGG | + | chr5_2:5784059-5784078 | Msa0752160:CDS | 40.0% |
| ATTACCAAAGCTCCACTCTT+TGG | + | chr5_2:5784102-5784121 | Msa0752160:CDS | 40.0% | |
| ! | TTTTCCAAAGAGTGGAGCTT+TGG | - | chr5_2:5784109-5784128 | None:intergenic | 40.0% |
| ! | TCCACTCTTTGGAAAACTGA+TGG | + | chr5_2:5784113-5784132 | Msa0752160:CDS | 40.0% |
| ! | ACCATCAGTTTTCCAAAGAG+TGG | - | chr5_2:5784117-5784136 | None:intergenic | 40.0% |
| TGTCCTCTGCTGTATTTATC+AGG | + | chr5_2:5784276-5784295 | Msa0752160:intron | 40.0% | |
| CAACCTGATAAATACAGCAG+AGG | - | chr5_2:5784282-5784301 | None:intergenic | 40.0% | |
| CTCTGCTGTATTTATCAGGT+TGG | + | chr5_2:5784280-5784299 | Msa0752160:intron | 40.0% | |
| TGGGATCAACTTCTTTCCAA+GGG | + | chr5_2:5784356-5784375 | Msa0752160:intron | 40.0% | |
| !!! | TTTTTTCCTCAAACTGCCCT+TGG | - | chr5_2:5784375-5784394 | None:intergenic | 40.0% |
| !! | GAATAATGGGTCTAATCTCC+TGG | + | chr5_2:5784399-5784418 | Msa0752160:CDS | 40.0% |
| !!! | ACTTCCTCCAAGTTTTGTTG+AGG | + | chr5_2:5784501-5784520 | Msa0752160:CDS | 40.0% |
| CTTTCCTCAACAAAACTTGG+AGG | - | chr5_2:5784508-5784527 | None:intergenic | 40.0% | |
| TAATCGTGTTTCTTCCAGTC+AGG | + | chr5_2:5784727-5784746 | Msa0752160:intron | 40.0% | |
| ! | GTGAGACAACTTTTGCTTCT+TGG | - | chr5_2:5784786-5784805 | None:intergenic | 40.0% |
| GAAGCAAAAGTTGTCTCACA+AGG | + | chr5_2:5784787-5784806 | Msa0752160:CDS | 40.0% | |
| CAAAAGTTGTCTCACAAGGA+GGG | + | chr5_2:5784791-5784810 | Msa0752160:CDS | 40.0% | |
| TATGTAACCTCTAAGCTGCT+AGG | + | chr5_2:5784946-5784965 | Msa0752160:intron | 40.0% | |
| GGTTAGGTAGGGAAGATTAA+CGG | - | chr5_2:5785309-5785328 | None:intergenic | 40.0% | |
| ATGAGTGGTTAGGTTAGGTA+GGG | - | chr5_2:5785320-5785339 | None:intergenic | 40.0% | |
| AATGAGTGGTTAGGTTAGGT+AGG | - | chr5_2:5785321-5785340 | None:intergenic | 40.0% | |
| ! | TCCATTTTCGGCATTAGAAC+TGG | - | chr5_2:5785835-5785854 | None:intergenic | 40.0% |
| ! | AGTTCTAATGCCGAAAATGG+AGG | + | chr5_2:5785834-5785853 | Msa0752160:intron | 40.0% |
| TTCCCAAACATCAAGCTGAA+GGG | + | chr5_2:5785960-5785979 | Msa0752160:CDS | 40.0% | |
| TTCCCTTCAGCTTGATGTTT+GGG | - | chr5_2:5785965-5785984 | None:intergenic | 40.0% | |
| TTTCCCTTCAGCTTGATGTT+TGG | - | chr5_2:5785966-5785985 | None:intergenic | 40.0% | |
| GAAAGACCTTCATTCACAGA+AGG | + | chr5_2:5785982-5786001 | Msa0752160:CDS | 40.0% | |
| AGGGAAGCGATGATAATCGA+TGG | + | chr5_2:5780495-5780514 | Msa0752160:CDS | 45.0% | |
| ACCAAATCCTTGAAAGGTCG+CGG | - | chr5_2:5780871-5780890 | None:intergenic | 45.0% | |
| GTAACCCTATGTTAAAGGGC+AGG | + | chr5_2:5780936-5780955 | Msa0752160:CDS | 45.0% | |
| TTGGCCTGCCCTTTAACATA+GGG | - | chr5_2:5780943-5780962 | None:intergenic | 45.0% | |
| ! | ATTGGCCTGCCCTTTAACAT+AGG | - | chr5_2:5780944-5780963 | None:intergenic | 45.0% |
| TATGTTAAAGGGCAGGCCAA+TGG | + | chr5_2:5780943-5780962 | Msa0752160:CDS | 45.0% | |
| GGCAGTGGATATCATAGACA+TGG | - | chr5_2:5780978-5780997 | None:intergenic | 45.0% | |
| GAATTTCATCGCTGGTAGTC+TGG | + | chr5_2:5781298-5781317 | Msa0752160:CDS | 45.0% | |
| ! | ACCGAATCGCTTACTTGCTA+AGG | + | chr5_2:5781530-5781549 | Msa0752160:CDS | 45.0% |
| AAGCGTAGAAGTAACGCATG+TGG | - | chr5_2:5781642-5781661 | None:intergenic | 45.0% | |
| TTACTTCTACGCTTGCCACT+TGG | + | chr5_2:5781648-5781667 | Msa0752160:intron | 45.0% | |
| ATAACAGCCAAGCGGTCATT+TGG | - | chr5_2:5782252-5782271 | None:intergenic | 45.0% | |
| ATCCTCCCTTCCTATCAGAA+AGG | + | chr5_2:5782281-5782300 | Msa0752160:CDS | 45.0% | |
| AGAAAGTCACTGTCGCAACT+AGG | - | chr5_2:5782367-5782386 | None:intergenic | 45.0% | |
| ATGTGAGCAGATGCTGGATA+AGG | + | chr5_2:5782506-5782525 | Msa0752160:CDS | 45.0% | |
| TGTGAGCAGATGCTGGATAA+GGG | + | chr5_2:5782507-5782526 | Msa0752160:CDS | 45.0% | |
| ! | GGGTTTAGGTTTGGGAAAGA+CGG | + | chr5_2:5782879-5782898 | Msa0752160:CDS | 45.0% |
| ATGCAACAACGCTTCATCCT+CGG | - | chr5_2:5782962-5782981 | None:intergenic | 45.0% | |
| ! | ACCCTCTTTTTGCATGTCTG+TGG | - | chr5_2:5783301-5783320 | None:intergenic | 45.0% |
| ATGCAAAAAGAGGGTCTGCA+TGG | + | chr5_2:5783306-5783325 | Msa0752160:CDS | 45.0% | |
| TGCAAAAAGAGGGTCTGCAT+GGG | + | chr5_2:5783307-5783326 | Msa0752160:CDS | 45.0% | |
| ! | GATTTGTTCAAGTCCCTTGG+GGG | + | chr5_2:5783486-5783505 | Msa0752160:intron | 45.0% |
| ACATGACACATATCCCCCAA+GGG | - | chr5_2:5783502-5783521 | None:intergenic | 45.0% | |
| GTCCTCAAGGCCAATATAAG+AGG | + | chr5_2:5783751-5783770 | Msa0752160:intron | 45.0% | |
| !! | ACCCTCTTATATTGGCCTTG+AGG | - | chr5_2:5783756-5783775 | None:intergenic | 45.0% |
| !! | GATACTCTAAGGCCTAAGAG+GGG | - | chr5_2:5783858-5783877 | None:intergenic | 45.0% |
| !! | GTGATACTCTAAGGCCTAAG+AGG | - | chr5_2:5783860-5783879 | None:intergenic | 45.0% |
| CTGTATCAGTGACAAAGTCG+TGG | - | chr5_2:5783998-5784017 | None:intergenic | 45.0% | |
| ! | GAAAACTGATGGTGCAGAGA+AGG | + | chr5_2:5784124-5784143 | Msa0752160:CDS | 45.0% |
| ! | GATGCAAGTTCTAACCACAG+TGG | + | chr5_2:5784319-5784338 | Msa0752160:CDS | 45.0% |
| TAACCACAGTGGATGTACAG+AGG | + | chr5_2:5784330-5784349 | Msa0752160:CDS | 45.0% | |
| AGTGGATGTACAGAGGTTCT+GGG | + | chr5_2:5784337-5784356 | Msa0752160:intron | 45.0% | |
| CTGGGATCAACTTCTTTCCA+AGG | + | chr5_2:5784355-5784374 | Msa0752160:intron | 45.0% | |
| TTCTTTCCAAGGGCAGTTTG+AGG | + | chr5_2:5784366-5784385 | Msa0752160:intron | 45.0% | |
| ! | TAATGGGTCTAATCTCCTGG+AGG | + | chr5_2:5784402-5784421 | Msa0752160:CDS | 45.0% |
| AATTAGGGCTATCATCCTCC+AGG | - | chr5_2:5784420-5784439 | None:intergenic | 45.0% | |
| ATACCTCGTACCATTTGTCG+TGG | + | chr5_2:5784621-5784640 | Msa0752160:intron | 45.0% | |
| AAACCACGACAAATGGTACG+AGG | - | chr5_2:5784627-5784646 | None:intergenic | 45.0% | |
| GCAAAAGTTGTCTCACAAGG+AGG | + | chr5_2:5784790-5784809 | Msa0752160:CDS | 45.0% | |
| TGCTCTAGCAGTGAGAGATT+TGG | + | chr5_2:5784971-5784990 | Msa0752160:intron | 45.0% | |
| GCTCTAGCAGTGAGAGATTT+GGG | + | chr5_2:5784972-5784991 | Msa0752160:intron | 45.0% | |
| ! | AAACAGACTCAAAGGGGTGT+GGG | + | chr5_2:5785189-5785208 | Msa0752160:intron | 45.0% |
| !! | GATTTTTGTGGTGGGGATGT+TGG | + | chr5_2:5785458-5785477 | Msa0752160:intron | 45.0% |
| CACCGAGACATGCCTTTAAT+AGG | - | chr5_2:5785502-5785521 | None:intergenic | 45.0% | |
| CATTGGCACATGTCAAACAC+TGG | - | chr5_2:5785620-5785639 | None:intergenic | 45.0% | |
| !! | GTCGGTGTCATATCAGACAT+TGG | - | chr5_2:5785637-5785656 | None:intergenic | 45.0% |
| TGGAAAACAAAAAGAGGCGG+TGG | + | chr5_2:5785803-5785822 | Msa0752160:intron | 45.0% | |
| ! | GCCAGTTCTAATGCCGAAAA+TGG | + | chr5_2:5785831-5785850 | Msa0752160:intron | 45.0% |
| GATGCAATGCATGAGACTGA+CGG | - | chr5_2:5785869-5785888 | None:intergenic | 45.0% | |
| CTTCCCAAACATCAAGCTGA+AGG | + | chr5_2:5785959-5785978 | Msa0752160:CDS | 45.0% | |
| !!! | CATTTTTTTTAAAATTTTAT+TGG | + | chr5_2:5785562-5785581 | Msa0752160:intron | 5.0% |
| GAGAGGAAAGGGTTGAGTGT+TGG | + | chr5_2:5780408-5780427 | Msa0752160:five_prime_UTR | 50.0% | |
| AGAGAAAGAGAAGACGGCGA+TGG | + | chr5_2:5780472-5780491 | Msa0752160:exon | 50.0% | |
| AAAGAGAAGACGGCGATGGA+GGG | + | chr5_2:5780476-5780495 | Msa0752160:exon | 50.0% | |
| GTTTACACTAGCGCGAAAGC+AGG | + | chr5_2:5780533-5780552 | Msa0752160:CDS | 50.0% | |
| CCAAATCCTTGAAAGGTCGC+GGG | - | chr5_2:5780870-5780889 | None:intergenic | 50.0% | |
| CCATGCCTGGGTTTATTGCA+CGG | + | chr5_2:5781112-5781131 | Msa0752160:CDS | 50.0% | |
| AGCTTCCGTGCAATAAACCC+AGG | - | chr5_2:5781120-5781139 | None:intergenic | 50.0% | |
| GTCGGCGTTTATGAAGAGAC+TGG | + | chr5_2:5781483-5781502 | Msa0752160:CDS | 50.0% | |
| ! | ACTGGTCTCACATGTAGTGC+TGG | + | chr5_2:5781501-5781520 | Msa0752160:CDS | 50.0% |
| ! | TCTCACATGTAGTGCTGGAG+TGG | + | chr5_2:5781506-5781525 | Msa0752160:CDS | 50.0% |
| GACCTTTCTGATAGGAAGGG+AGG | - | chr5_2:5782286-5782305 | None:intergenic | 50.0% | |
| ! | TGTTGACAGATTGGGGGCAT+CGG | + | chr5_2:5782438-5782457 | Msa0752160:intron | 50.0% |
| AAGCACATGTGAGCAGATGC+TGG | + | chr5_2:5782500-5782519 | Msa0752160:CDS | 50.0% | |
| !! | CTTTATCCACAGAGGTACCC+AGG | - | chr5_2:5783438-5783457 | None:intergenic | 50.0% |
| CACATGACACATATCCCCCA+AGG | - | chr5_2:5783503-5783522 | None:intergenic | 50.0% | |
| CTTGGGGGATATGTGTCATG+TGG | + | chr5_2:5783501-5783520 | Msa0752160:intron | 50.0% | |
| CTGATCTTTCCCTTGACGGT+AGG | + | chr5_2:5784021-5784040 | Msa0752160:CDS | 50.0% | |
| ATCTGTGTGCCTACCGTCAA+GGG | - | chr5_2:5784033-5784052 | None:intergenic | 50.0% | |
| GAACCTCTGTACATCCACTG+TGG | - | chr5_2:5784336-5784355 | None:intergenic | 50.0% | |
| CAGTGGATGTACAGAGGTTC+TGG | + | chr5_2:5784336-5784355 | Msa0752160:intron | 50.0% | |
| GAGCAATCCTAGCAGCTTAG+AGG | - | chr5_2:5784956-5784975 | None:intergenic | 50.0% | |
| CAAACAGACTCAAAGGGGTG+TGG | + | chr5_2:5785188-5785207 | Msa0752160:intron | 50.0% | |
| GTCAAACACTGGACACGACA+TGG | - | chr5_2:5785609-5785628 | None:intergenic | 50.0% | |
| ! | GCGTCTGTGACCTCCATTTT+CGG | - | chr5_2:5785847-5785866 | None:intergenic | 50.0% |
| AGTTGAGGAGACTCTGCACA+AGG | + | chr5_2:5785904-5785923 | Msa0752160:CDS | 50.0% | |
| GAAAGAGAAGACGGCGATGG+AGG | + | chr5_2:5780475-5780494 | Msa0752160:exon | 55.0% | |
| CACTAGCGCGAAAGCAGGAA+TGG | + | chr5_2:5780538-5780557 | Msa0752160:CDS | 55.0% | |
| AGCGCGAAAGCAGGAATGGA+AGG | + | chr5_2:5780542-5780561 | Msa0752160:CDS | 55.0% | |
| AAGCTTCCCGCGACCTTTCA+AGG | + | chr5_2:5780861-5780880 | Msa0752160:CDS | 55.0% | |
| CCCGCGACCTTTCAAGGATT+TGG | + | chr5_2:5780867-5780886 | Msa0752160:CDS | 55.0% | |
| ! | GACATGGTGCCAACAGCCAT+TGG | - | chr5_2:5780962-5780981 | None:intergenic | 55.0% |
| GAGTTCGTTCTGCCATGCCT+GGG | + | chr5_2:5781100-5781119 | Msa0752160:CDS | 55.0% | |
| CCGTGCAATAAACCCAGGCA+TGG | - | chr5_2:5781115-5781134 | None:intergenic | 55.0% | |
| !! | ACAGATTGGGGGCATCGGTA+AGG | + | chr5_2:5782443-5782462 | Msa0752160:intron | 55.0% |
| CAACAACGCTTCATCCTCGG+TGG | - | chr5_2:5782959-5782978 | None:intergenic | 55.0% | |
| ! | TATTGGCCTGGGTACCTCTG+TGG | + | chr5_2:5783429-5783448 | Msa0752160:intron | 55.0% |
| GATCTGTGTGCCTACCGTCA+AGG | - | chr5_2:5784034-5784053 | None:intergenic | 55.0% | |
| ! | TCGGTGCTTCTGATCCTGAC+TGG | - | chr5_2:5784744-5784763 | None:intergenic | 55.0% |
| GGAGACTCTGCACAAGGATG+TGG | + | chr5_2:5785910-5785929 | Msa0752160:CDS | 55.0% | |
| ATGAATGGGGGGGGGTTACG+CGG | + | chr5_2:5780441-5780460 | Msa0752160:five_prime_UTR | 60.0% | |
| AAGGGCAGGCCAATGGCTGT+TGG | + | chr5_2:5780950-5780969 | Msa0752160:CDS | 60.0% | |
| GGAGTTCGTTCTGCCATGCC+TGG | + | chr5_2:5781099-5781118 | Msa0752160:CDS | 60.0% | |
| ! | GAGGACGTTTTCTGCCACCG+AGG | + | chr5_2:5782942-5782961 | Msa0752160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 5780395 | 5786009 | 5780395 | ID=Msa0752160;Name=Msa0752160 |
| chr5_2 | mRNA | 5780395 | 5786009 | 5780395 | ID=Msa0752160-mRNA-1;Parent=Msa0752160;Name=Msa0752160-mRNA-1;_AED=0.21;_eAED=0.22;_QI=96|0.8|0.62|1|0.73|0.68|16|0|688 |
| chr5_2 | exon | 5780395 | 5780727 | 5780395 | ID=Msa0752160-mRNA-1:exon:2410;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5780833 | 5781006 | 5780833 | ID=Msa0752160-mRNA-1:exon:2411;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5781087 | 5781210 | 5781087 | ID=Msa0752160-mRNA-1:exon:2412;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5781279 | 5781379 | 5781279 | ID=Msa0752160-mRNA-1:exon:2413;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5781465 | 5781551 | 5781465 | ID=Msa0752160-mRNA-1:exon:2414;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5782207 | 5782302 | 5782207 | ID=Msa0752160-mRNA-1:exon:2415;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5782447 | 5782567 | 5782447 | ID=Msa0752160-mRNA-1:exon:2416;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5782863 | 5782991 | 5782863 | ID=Msa0752160-mRNA-1:exon:2417;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5783277 | 5783368 | 5783277 | ID=Msa0752160-mRNA-1:exon:2418;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5783589 | 5783700 | 5783589 | ID=Msa0752160-mRNA-1:exon:2419;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5783865 | 5784080 | 5783865 | ID=Msa0752160-mRNA-1:exon:2420;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5784096 | 5784145 | 5784096 | ID=Msa0752160-mRNA-1:exon:2421;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5784298 | 5784351 | 5784298 | ID=Msa0752160-mRNA-1:exon:2422;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5784382 | 5784611 | 5784382 | ID=Msa0752160-mRNA-1:exon:2423;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5784745 | 5784841 | 5784745 | ID=Msa0752160-mRNA-1:exon:2424;Parent=Msa0752160-mRNA-1 |
| chr5_2 | exon | 5785863 | 5786009 | 5785863 | ID=Msa0752160-mRNA-1:exon:2425;Parent=Msa0752160-mRNA-1 |
| chr5_2 | five_prime_UTR | 5780395 | 5780490 | 5780395 | ID=Msa0752160-mRNA-1:five_prime_utr;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5780491 | 5780727 | 5780491 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5780833 | 5781006 | 5780833 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5781087 | 5781210 | 5781087 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5781279 | 5781379 | 5781279 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5781465 | 5781551 | 5781465 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5782207 | 5782302 | 5782207 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5782447 | 5782567 | 5782447 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5782863 | 5782991 | 5782863 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5783277 | 5783368 | 5783277 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5783589 | 5783700 | 5783589 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5783865 | 5784080 | 5783865 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5784096 | 5784145 | 5784096 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5784298 | 5784351 | 5784298 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5784382 | 5784611 | 5784382 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5784745 | 5784841 | 5784745 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| chr5_2 | CDS | 5785863 | 5786009 | 5785863 | ID=Msa0752160-mRNA-1:cds;Parent=Msa0752160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
