Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795360 | XP_003611121.1 | 95.694 | 209 | 9 | 0 | 1 | 209 | 1 | 209 | 5.52e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795360 | sp|P93788|REMO_SOLTU | 48.691 | 191 | 92 | 4 | 20 | 207 | 11 | 198 | 8.95e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795360 | G7KDE4 | 95.694 | 209 | 9 | 0 | 1 | 209 | 1 | 209 | 2.64e-129 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003400 | Msa0795360 | 0.802650 | 5.074007e-49 | -8.615850e-47 |
| Msa0010110 | Msa0795360 | 0.804580 | 2.017732e-49 | -8.615850e-47 |
| Msa0028620 | Msa0795360 | 0.805639 | 1.211630e-49 | -8.615850e-47 |
| Msa0050820 | Msa0795360 | 0.810362 | 1.197039e-50 | -8.615850e-47 |
| Msa0053860 | Msa0795360 | 0.804152 | 2.477358e-49 | -8.615850e-47 |
| Msa0059840 | Msa0795360 | 0.805675 | 1.190266e-49 | -8.615850e-47 |
| Msa0079130 | Msa0795360 | 0.822915 | 1.834253e-53 | -8.615850e-47 |
| Msa0081650 | Msa0795360 | 0.814506 | 1.488360e-51 | -8.615850e-47 |
| Msa0090550 | Msa0795360 | 0.801342 | 9.420499e-49 | -8.615850e-47 |
| Msa0104670 | Msa0795360 | 0.826895 | 2.110431e-54 | -8.615850e-47 |
| Msa0104800 | Msa0795360 | 0.806388 | 8.426724e-50 | -8.615850e-47 |
| Msa0106620 | Msa0795360 | 0.820845 | 5.530846e-53 | -8.615850e-47 |
| Msa0106710 | Msa0795360 | 0.834627 | 2.687323e-56 | -8.615850e-47 |
| Msa0628420 | Msa0795360 | 0.808162 | 3.547173e-50 | -8.615850e-47 |
| Msa0640940 | Msa0795360 | 0.800338 | 1.510071e-48 | -8.615850e-47 |
| Msa0673270 | Msa0795360 | 0.812936 | 3.298365e-51 | -8.615850e-47 |
| Msa0679360 | Msa0795360 | 0.810509 | 1.112734e-50 | -8.615850e-47 |
| Msa0721280 | Msa0795360 | 0.880924 | 3.674352e-70 | -8.615850e-47 |
| Msa0753370 | Msa0795360 | 0.934215 | 5.699244e-96 | -8.615850e-47 |
| Msa0763890 | Msa0795360 | 0.802088 | 6.622760e-49 | -8.615850e-47 |
| Msa0763920 | Msa0795360 | 0.807483 | 4.945227e-50 | -8.615850e-47 |
| Msa0791090 | Msa0795360 | 0.801158 | 1.027645e-48 | -8.615850e-47 |
| Msa0795360 | Msa0795370 | 0.902047 | 1.445056e-78 | -8.615850e-47 |
| Msa0795360 | Msa0817460 | 0.838600 | 2.611664e-57 | -8.615850e-47 |
| Msa0795360 | Msa0832600 | 0.950227 | 2.544354e-108 | -8.615850e-47 |
| Msa0795360 | Msa0869280 | 0.829822 | 4.152031e-55 | -8.615850e-47 |
| Msa0795360 | Msa0892640 | 0.801845 | 7.428683e-49 | -8.615850e-47 |
| Msa0795360 | Msa0894710 | 0.801975 | 6.984711e-49 | -8.615850e-47 |
| Msa0795360 | Msa0897200 | 0.811413 | 7.090117e-51 | -8.615850e-47 |
| Msa0795360 | Msa0921420 | 0.813233 | 2.838818e-51 | -8.615850e-47 |
| Msa0795360 | Msa0933760 | 0.845852 | 3.136499e-59 | -8.615850e-47 |
| Msa0795360 | Msa0934140 | 0.831107 | 2.013250e-55 | -8.615850e-47 |
| Msa0795360 | Msa0960390 | 0.805795 | 1.123329e-49 | -8.615850e-47 |
| Msa0795360 | Msa0962840 | 0.807731 | 4.380615e-50 | -8.615850e-47 |
| Msa0795360 | Msa0971650 | 0.809261 | 2.065056e-50 | -8.615850e-47 |
| Msa0795360 | Msa0980880 | 0.800312 | 1.528703e-48 | -8.615850e-47 |
| Msa0795360 | Msa0986510 | 0.807366 | 5.235560e-50 | -8.615850e-47 |
| Msa0795360 | Msa0992580 | 0.805240 | 1.468411e-49 | -8.615850e-47 |
| Msa0795360 | Msa1002960 | 0.805477 | 1.310130e-49 | -8.615850e-47 |
| Msa0795360 | Msa1034500 | 0.825119 | 5.578130e-54 | -8.615850e-47 |
| Msa0795360 | Msa1036610 | 0.822678 | 2.083244e-53 | -8.615850e-47 |
| Msa0795360 | Msa1037520 | 0.802189 | 6.313035e-49 | -8.615850e-47 |
| Msa0795360 | Msa1063420 | 0.823872 | 1.096124e-53 | -8.615850e-47 |
| Msa0795360 | Msa1094190 | 0.811444 | 6.980241e-51 | -8.615850e-47 |
| Msa0795360 | Msa1163730 | 0.830778 | 2.424855e-55 | -8.615850e-47 |
| Msa0795360 | Msa1208790 | 0.817853 | 2.658206e-52 | -8.615850e-47 |
| Msa0795360 | Msa1227150 | 0.810364 | 1.196080e-50 | -8.615850e-47 |
| Msa0795360 | Msa1258170 | 0.811010 | 8.671358e-51 | -8.615850e-47 |
| Msa0795360 | Msa1258980 | 0.823223 | 1.554680e-53 | -8.615850e-47 |
| Msa0795360 | Msa1320820 | 0.805731 | 1.158769e-49 | -8.615850e-47 |
| Msa0795360 | Msa1330630 | 0.823720 | 1.189956e-53 | -8.615850e-47 |
| Msa0795360 | Msa1340200 | 0.847281 | 1.276942e-59 | -8.615850e-47 |
| Msa0795360 | Msa1357890 | 0.879965 | 8.093698e-70 | -8.615850e-47 |
| Msa0795360 | Msa1358070 | 0.927146 | 1.762760e-91 | -8.615850e-47 |
| Msa0795360 | Msa1370590 | 0.806799 | 6.902168e-50 | -8.615850e-47 |
| Msa0795360 | Msa1384100 | 0.807220 | 5.622459e-50 | -8.615850e-47 |
| Msa0795360 | Msa1398090 | 0.880390 | 5.710138e-70 | -8.615850e-47 |
| Msa0795360 | Msa1407190 | 0.803907 | 2.785994e-49 | -8.615850e-47 |
| Msa0795360 | Msa1435360 | 0.811653 | 6.285228e-51 | -8.615850e-47 |
| Msa0795360 | Msa1437730 | 0.802453 | 5.571398e-49 | -8.615850e-47 |
| Msa0795360 | Msa1444120 | 0.806473 | 8.087902e-50 | -8.615850e-47 |
| Msa0795360 | Msa1463900 | 0.821211 | 4.553863e-53 | -8.615850e-47 |
| Msa0795360 | Msa1464090 | 0.801610 | 8.300579e-49 | -8.615850e-47 |
| Msa0126790 | Msa0795360 | 0.827260 | 1.726062e-54 | -8.615850e-47 |
| Msa0136120 | Msa0795360 | 0.801333 | 9.459880e-49 | -8.615850e-47 |
| Msa0141400 | Msa0795360 | 0.804563 | 2.034464e-49 | -8.615850e-47 |
| Msa0146540 | Msa0795360 | 0.805795 | 1.123497e-49 | -8.615850e-47 |
| Msa0150860 | Msa0795360 | 0.838526 | 2.729571e-57 | -8.615850e-47 |
| Msa0160960 | Msa0795360 | 0.802299 | 5.991840e-49 | -8.615850e-47 |
| Msa0171870 | Msa0795360 | 0.823934 | 1.059979e-53 | -8.615850e-47 |
| Msa0173800 | Msa0795360 | 0.810862 | 9.335527e-51 | -8.615850e-47 |
| Msa0204960 | Msa0795360 | 0.828136 | 1.063225e-54 | -8.615850e-47 |
| Msa0205010 | Msa0795360 | 0.820116 | 8.131475e-53 | -8.615850e-47 |
| Msa0207030 | Msa0795360 | 0.810012 | 1.424066e-50 | -8.615850e-47 |
| Msa0217670 | Msa0795360 | 0.805700 | 1.175891e-49 | -8.615850e-47 |
| Msa0225220 | Msa0795360 | 0.814766 | 1.303336e-51 | -8.615850e-47 |
| Msa0366210 | Msa0795360 | 0.826704 | 2.343995e-54 | -8.615850e-47 |
| Msa0389910 | Msa0795360 | 0.800040 | 1.736526e-48 | -8.615850e-47 |
| Msa0395980 | Msa0795360 | 0.836347 | 9.869947e-57 | -8.615850e-47 |
| Msa0414140 | Msa0795360 | 0.803269 | 3.778495e-49 | -8.615850e-47 |
| Msa0419720 | Msa0795360 | 0.801771 | 7.695308e-49 | -8.615850e-47 |
| Msa0432500 | Msa0795360 | 0.800697 | 1.275952e-48 | -8.615850e-47 |
| Msa0440510 | Msa0795360 | 0.827290 | 1.697417e-54 | -8.615850e-47 |
| Msa0476680 | Msa0795360 | 0.800581 | 1.347570e-48 | -8.615850e-47 |
| Msa0482040 | Msa0795360 | 0.807272 | 5.482086e-50 | -8.615850e-47 |
| Msa0241140 | Msa0795360 | 0.823961 | 1.044892e-53 | -8.615850e-47 |
| Msa0244970 | Msa0795360 | 0.811611 | 6.420007e-51 | -8.615850e-47 |
| Msa0244980 | Msa0795360 | 0.811954 | 5.407338e-51 | -8.615850e-47 |
| Msa0249310 | Msa0795360 | 0.810107 | 1.358651e-50 | -8.615850e-47 |
| Msa0283420 | Msa0795360 | 0.843882 | 1.066033e-58 | -8.615850e-47 |
| Msa0287790 | Msa0795360 | 0.813124 | 2.999746e-51 | -8.615850e-47 |
| Msa0296790 | Msa0795360 | 0.813024 | 3.154904e-51 | -8.615850e-47 |
| Msa0307960 | Msa0795360 | 0.806300 | 8.793986e-50 | -8.615850e-47 |
| Msa0317970 | Msa0795360 | 0.801816 | 7.531501e-49 | -8.615850e-47 |
| Msa0321690 | Msa0795360 | 0.849593 | 2.927583e-60 | -8.615850e-47 |
| Msa0322900 | Msa0795360 | 0.800620 | 1.323005e-48 | -8.615850e-47 |
| Msa0339910 | Msa0795360 | 0.804244 | 2.370458e-49 | -8.615850e-47 |
| Msa0342010 | Msa0795360 | 0.817380 | 3.397951e-52 | -8.615850e-47 |
| Msa0346700 | Msa0795360 | 0.803646 | 3.157154e-49 | -8.615850e-47 |
| Msa0362890 | Msa0795360 | 0.828212 | 1.019413e-54 | -8.615850e-47 |
| Msa0482940 | Msa0795360 | 0.806383 | 8.448121e-50 | -8.615850e-47 |
| Msa0491000 | Msa0795360 | 0.833201 | 6.110539e-56 | -8.615850e-47 |
| Msa0521010 | Msa0795360 | 0.800641 | 1.310500e-48 | -8.615850e-47 |
| Msa0531250 | Msa0795360 | 0.807827 | 4.179897e-50 | -8.615850e-47 |
| Msa0558370 | Msa0795360 | 0.807701 | 4.445550e-50 | -8.615850e-47 |
| Msa0566350 | Msa0795360 | 0.813471 | 2.517789e-51 | -8.615850e-47 |
| Msa0566750 | Msa0795360 | 0.806152 | 9.451287e-50 | -8.615850e-47 |
| Msa0574390 | Msa0795360 | 0.803439 | 3.484085e-49 | -8.615850e-47 |
| Msa0588090 | Msa0795360 | 0.818992 | 1.467486e-52 | -8.615850e-47 |
| Msa0594920 | Msa0795360 | 0.803698 | 3.078542e-49 | -8.615850e-47 |
| Msa0600450 | Msa0795360 | 0.804036 | 2.619575e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795360 | MtrunA17_Chr5g0397781 | 95.694 | 209 | 9 | 0 | 1 | 209 | 1 | 209 | 5.08e-133 | 372 |
| Msa0795360 | MtrunA17_Chr8g0386521 | 50.538 | 186 | 88 | 2 | 28 | 209 | 15 | 200 | 2.26e-55 | 175 |
| Msa0795360 | MtrunA17_Chr1g0203401 | 57.937 | 126 | 53 | 0 | 82 | 207 | 84 | 209 | 3.14e-45 | 149 |
| Msa0795360 | MtrunA17_Chr8g0349271 | 59.524 | 126 | 51 | 0 | 82 | 207 | 75 | 200 | 3.87e-44 | 146 |
| Msa0795360 | MtrunA17_Chr7g0247121 | 50.769 | 65 | 32 | 0 | 143 | 207 | 34 | 98 | 1.34e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795360 | AT5G23750.3 | 60.317 | 126 | 50 | 0 | 82 | 207 | 104 | 229 | 4.75e-49 | 160 |
| Msa0795360 | AT5G23750.2 | 60.317 | 126 | 50 | 0 | 82 | 207 | 76 | 201 | 5.60e-49 | 159 |
| Msa0795360 | AT5G23750.1 | 60.317 | 126 | 50 | 0 | 82 | 207 | 77 | 202 | 7.40e-49 | 158 |
| Msa0795360 | AT3G48940.1 | 57.937 | 126 | 53 | 0 | 82 | 207 | 50 | 175 | 1.46e-44 | 147 |
| Msa0795360 | AT3G61260.1 | 56.154 | 130 | 57 | 0 | 78 | 207 | 83 | 212 | 7.54e-44 | 146 |
| Msa0795360 | AT2G45820.1 | 58.519 | 135 | 56 | 0 | 73 | 207 | 56 | 190 | 3.97e-40 | 135 |
| Msa0795360 | AT1G63295.1 | 40.625 | 128 | 73 | 2 | 83 | 207 | 24 | 151 | 7.65e-21 | 85.1 |
| Msa0795360 | AT1G63295.2 | 43.243 | 111 | 63 | 0 | 83 | 193 | 64 | 174 | 2.33e-20 | 85.1 |
| Msa0795360 | AT4G00670.1 | 37.963 | 108 | 66 | 1 | 101 | 207 | 16 | 123 | 1.49e-17 | 75.9 |
Find 44 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGTTCTTCTTCTTATT+TGG | 0.151302 | 5_3:+7298868 | None:intergenic |
| AGCAATCTTCTGTTGGATTA+TGG | 0.203365 | 5_3:-7299714 | Msa0795360:CDS |
| AAGCATGCAAACAATTTCTT+TGG | 0.279239 | 5_3:+7298912 | None:intergenic |
| AGGGGATCATGATGATAAAA+AGG | 0.323089 | 5_3:-7300025 | Msa0795360:CDS |
| GCAATCTTCTGTTGGATTAT+GGG | 0.326593 | 5_3:-7299713 | Msa0795360:CDS |
| AAAAGACAAAGGCAGAAAAT+AGG | 0.344478 | 5_3:-7299827 | Msa0795360:intron |
| AGATGATCATGCTGGTAATA+AGG | 0.356783 | 5_3:-7300052 | Msa0795360:CDS |
| CATGCTGGTAATAAGGAAAC+AGG | 0.363454 | 5_3:-7300045 | Msa0795360:CDS |
| GGGGAAAGCTCTTCAGGAAC+AGG | 0.393746 | 5_3:+7300884 | None:intergenic |
| GCTTTCCCCTGTTGTGGAAA+AGG | 0.394410 | 5_3:-7300870 | Msa0795360:CDS |
| ACAACAGGGGAAAGCTCTTC+AGG | 0.423226 | 5_3:+7300878 | None:intergenic |
| ACCACAGCTACAGTCTCTTC+TGG | 0.424564 | 5_3:-7300909 | Msa0795360:CDS |
| TGGCCTGCTGAGTAGGCTCC+TGG | 0.430478 | 5_3:+7300816 | None:intergenic |
| TGAAGAGCTTTCCCCTGTTG+TGG | 0.460075 | 5_3:-7300876 | Msa0795360:CDS |
| TACAAGAAGCAATCTTCTGT+TGG | 0.476983 | 5_3:-7299721 | Msa0795360:CDS |
| AAGCAAGAAATCATCTATAG+AGG | 0.477360 | 5_3:-7299686 | Msa0795360:CDS |
| TGATTCAGTCTTGTTGATGC+TGG | 0.478635 | 5_3:+7300931 | None:intergenic |
| AATTGTAGCAGAGAAAAGAT+TGG | 0.480532 | 5_3:-7299877 | Msa0795360:CDS |
| TTCTGTTCTGTTATGTTCTG+CGG | 0.503284 | 5_3:+7300979 | None:intergenic |
| ATTGGCTTTAATTAAAGCAT+GGG | 0.513985 | 5_3:-7299859 | Msa0795360:CDS |
| GATTGGCTTTAATTAAAGCA+TGG | 0.523135 | 5_3:-7299860 | Msa0795360:CDS |
| CAGCCAGGAGCCTACTCAGC+AGG | 0.535469 | 5_3:-7300819 | Msa0795360:CDS |
| ATGTTATTGATTATGAAATG+TGG | 0.536366 | 5_3:+7298764 | None:intergenic |
| GTTGAGATGGCCTGCTGAGT+AGG | 0.537629 | 5_3:+7300809 | None:intergenic |
| CTGATCATCAAGTGTTGAGA+TGG | 0.554532 | 5_3:+7300796 | None:intergenic |
| GGCACAACTCAAGAAATTTG+AGG | 0.555597 | 5_3:-7299665 | Msa0795360:intron |
| TAACAGAACAGAACAAGTCA+TGG | 0.567812 | 5_3:-7300969 | Msa0795360:exon |
| CTGAAAACTTAGTTATGACA+AGG | 0.584476 | 5_3:+7301020 | None:intergenic |
| AACTTAGTTATGACAAGGGT+AGG | 0.585109 | 5_3:+7301025 | None:intergenic |
| GGAAGAATGTCTGGAGCTAG+AGG | 0.585162 | 5_3:-7298970 | Msa0795360:CDS |
| ATTTCTTTGGTGCAACTCCA+CGG | 0.591194 | 5_3:+7298925 | None:intergenic |
| AAGCAATATCAGTATCAGCC+AGG | 0.592102 | 5_3:-7300834 | Msa0795360:CDS |
| GCTGCAAAGTTTCGTAGCCG+TGG | 0.595886 | 5_3:-7298942 | Msa0795360:CDS |
| ATCTTCTGTTGGATTATGGG+AGG | 0.596122 | 5_3:-7299710 | Msa0795360:CDS |
| GAGGTTGCAGATGATCATGC+TGG | 0.615505 | 5_3:-7300060 | Msa0795360:CDS |
| AACAGAACAGAACAAGTCAT+GGG | 0.617130 | 5_3:-7300968 | Msa0795360:exon |
| CAAGTCATGGGAGAATCAGA+AGG | 0.618923 | 5_3:-7300956 | Msa0795360:exon |
| TCCAGAAGAGACTGTAGCTG+TGG | 0.625821 | 5_3:+7300908 | None:intergenic |
| ATGCTGGTAATAAGGAAACA+GGG | 0.632785 | 5_3:-7300044 | Msa0795360:CDS |
| TGCTGGTAATAAGGAAACAG+GGG | 0.640080 | 5_3:-7300043 | Msa0795360:CDS |
| GGAAGAAAGTGAAAAGACAA+AGG | 0.645779 | 5_3:-7299838 | Msa0795360:CDS |
| GGGAAAGCTCTTCAGGAACA+GGG | 0.646598 | 5_3:+7300885 | None:intergenic |
| GCTAAGGGCTCAACTGACAG+AGG | 0.669431 | 5_3:-7300000 | Msa0795360:intron |
| TGAAAACTTAGTTATGACAA+GGG | 0.676390 | 5_3:+7301021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr5_3:7300312-7300331 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr5_3:7300313-7300332 | None:intergenic | 10.0% |
| !!! | ACAAAATTGTTTTAATTAAT+AGG | - | chr5_3:7300678-7300697 | Msa0795360:intron | 10.0% |
| !!! | TTTTAATTAATAGGAAAATT+TGG | - | chr5_3:7300687-7300706 | Msa0795360:intron | 10.0% |
| !! | TATCGTATTTATAGTTAATA+TGG | - | chr5_3:7299540-7299559 | Msa0795360:intron | 15.0% |
| !!! | TATTTTATATGAGTAAGAAT+GGG | + | chr5_3:7299985-7300004 | None:intergenic | 15.0% |
| !!! | ATATTTTATATGAGTAAGAA+TGG | + | chr5_3:7299986-7300005 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr5_3:7300311-7300330 | None:intergenic | 15.0% |
| !!! | CTATCTTGTTTAAATTGTTA+AGG | - | chr5_3:7299337-7299356 | Msa0795360:intron | 20.0% |
| !!! | GTTAATATGGAATTTTTTTG+AGG | - | chr5_3:7299553-7299572 | Msa0795360:intron | 20.0% |
| !!! | GTTTTAGACTTCAAAATTTT+AGG | + | chr5_3:7299590-7299609 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr5_3:7300178-7300197 | None:intergenic | 20.0% |
| !!! | TAAAATGACTCAGTTATTTT+GGG | + | chr5_3:7300200-7300219 | None:intergenic | 20.0% |
| !!! | TTAAAATGACTCAGTTATTT+TGG | + | chr5_3:7300201-7300220 | None:intergenic | 20.0% |
| !! | AATTAGAGTTATGTTGTATT+GGG | + | chr5_3:7300247-7300266 | None:intergenic | 20.0% |
| !! | TAATTAGAGTTATGTTGTAT+TGG | + | chr5_3:7300248-7300267 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr5_3:7300288-7300307 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTGTTGTAAATT+AGG | - | chr5_3:7300409-7300428 | Msa0795360:intron | 20.0% |
| !!! | TTATGTATACTTTTAAAGTG+TGG | - | chr5_3:7300954-7300973 | Msa0795360:exon | 20.0% |
| !!! | ATGTTATTGATTATGAAATG+TGG | + | chr5_3:7301019-7301038 | None:intergenic | 20.0% |
| ! | TGAAAACTTAGTTATGACAA+GGG | + | chr5_3:7298762-7298781 | None:intergenic | 25.0% |
| ! | TTTAAGCCTCCAAATATATT+AGG | + | chr5_3:7299379-7299398 | None:intergenic | 25.0% |
| !!! | CCTCATATTTTATTTGTTCT+AGG | + | chr5_3:7299470-7299489 | None:intergenic | 25.0% |
| ! | CCTAGAACAAATAAAATATG+AGG | - | chr5_3:7299467-7299486 | Msa0795360:intron | 25.0% |
| ! | AGCTTAATTGTTTAGAAAGA+AGG | + | chr5_3:7299493-7299512 | None:intergenic | 25.0% |
| !! | TCATCATATTTTTCATACAG+AGG | - | chr5_3:7299701-7299720 | Msa0795360:CDS | 25.0% |
| !!! | ATTGGCTTTAATTAAAGCAT+GGG | - | chr5_3:7299921-7299940 | Msa0795360:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr5_3:7300179-7300198 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr5_3:7300289-7300308 | None:intergenic | 25.0% |
| !! | ATGAATAAAGTGAGTATTGT+GGG | + | chr5_3:7300605-7300624 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGTTACCAATGA+GGG | + | chr5_3:7300665-7300684 | None:intergenic | 25.0% |
| !! | AATTTTGTAAGTTACCAATG+AGG | + | chr5_3:7300666-7300685 | None:intergenic | 25.0% |
| ! | AATAGTTGAAGCTCAAAAAA+GGG | - | chr5_3:7300789-7300808 | Msa0795360:intron | 25.0% |
| ! | ATTCAGTTCTTCTTCTTATT+TGG | + | chr5_3:7300915-7300934 | None:intergenic | 25.0% |
| CTGAAAACTTAGTTATGACA+AGG | + | chr5_3:7298763-7298782 | None:intergenic | 30.0% | |
| ! | CTTGTCATAACTAAGTTTTC+AGG | - | chr5_3:7298761-7298780 | Msa0795360:three_prime_UTR | 30.0% |
| AAATTGTTAAGGTCATTGTC+AGG | - | chr5_3:7299348-7299367 | Msa0795360:intron | 30.0% | |
| AATTGTTAAGGTCATTGTCA+GGG | - | chr5_3:7299349-7299368 | Msa0795360:intron | 30.0% | |
| ! | TGAAGTCTAAAACCTTAACT+TGG | - | chr5_3:7299597-7299616 | Msa0795360:intron | 30.0% |
| ! | GAAGTCTAAAACCTTAACTT+GGG | - | chr5_3:7299598-7299617 | Msa0795360:intron | 30.0% |
| TGATGATAAAAAGGATGCTA+AGG | - | chr5_3:7299764-7299783 | Msa0795360:intron | 30.0% | |
| GATGATAAAAAGGATGCTAA+GGG | - | chr5_3:7299765-7299784 | Msa0795360:intron | 30.0% | |
| ! | ATTTTGTTGCATTAGATGCT+GGG | - | chr5_3:7299872-7299891 | Msa0795360:CDS | 30.0% |
| AATTGTAGCAGAGAAAAGAT+TGG | - | chr5_3:7299903-7299922 | Msa0795360:intron | 30.0% | |
| !! | GATTGGCTTTAATTAAAGCA+TGG | - | chr5_3:7299920-7299939 | Msa0795360:intron | 30.0% |
| AAAAGACAAAGGCAGAAAAT+AGG | - | chr5_3:7299953-7299972 | Msa0795360:intron | 30.0% | |
| AAGCAAGAAATCATCTATAG+AGG | - | chr5_3:7300094-7300113 | Msa0795360:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr5_3:7300304-7300323 | None:intergenic | 30.0% | |
| TCTAGTATAACGAAGGTTTA+GGG | + | chr5_3:7300548-7300567 | None:intergenic | 30.0% | |
| TTCTAGTATAACGAAGGTTT+AGG | + | chr5_3:7300549-7300568 | None:intergenic | 30.0% | |
| ! | GATGAATAAAGTGAGTATTG+TGG | + | chr5_3:7300606-7300625 | None:intergenic | 30.0% |
| ! | ATATTAGTTGTTTCCCTCAT+TGG | - | chr5_3:7300649-7300668 | Msa0795360:intron | 30.0% |
| CAATAGTTGAAGCTCAAAAA+AGG | - | chr5_3:7300788-7300807 | Msa0795360:intron | 30.0% | |
| AAGCATGCAAACAATTTCTT+TGG | + | chr5_3:7300871-7300890 | None:intergenic | 30.0% | |
| AACTTAGTTATGACAAGGGT+AGG | + | chr5_3:7298758-7298777 | None:intergenic | 35.0% | |
| TTCTGTTCTGTTATGTTCTG+CGG | + | chr5_3:7298804-7298823 | None:intergenic | 35.0% | |
| TAACAGAACAGAACAAGTCA+TGG | - | chr5_3:7298811-7298830 | Msa0795360:three_prime_UTR | 35.0% | |
| AACAGAACAGAACAAGTCAT+GGG | - | chr5_3:7298812-7298831 | Msa0795360:three_prime_UTR | 35.0% | |
| AGCCTCCAAATATATTAGGT+CGG | + | chr5_3:7299375-7299394 | None:intergenic | 35.0% | |
| AGATGATCATGCTGGTAATA+AGG | - | chr5_3:7299728-7299747 | Msa0795360:CDS | 35.0% | |
| ATGCTGGTAATAAGGAAACA+GGG | - | chr5_3:7299736-7299755 | Msa0795360:intron | 35.0% | |
| AGGGGATCATGATGATAAAA+AGG | - | chr5_3:7299755-7299774 | Msa0795360:intron | 35.0% | |
| ! | CATTTTGTTGCATTAGATGC+TGG | - | chr5_3:7299871-7299890 | Msa0795360:CDS | 35.0% |
| GGAAGAAAGTGAAAAGACAA+AGG | - | chr5_3:7299942-7299961 | Msa0795360:intron | 35.0% | |
| GAGCTTGATGAAAGATGAAA+TGG | - | chr5_3:7300024-7300043 | Msa0795360:CDS | 35.0% | |
| TACAAGAAGCAATCTTCTGT+TGG | - | chr5_3:7300059-7300078 | Msa0795360:CDS | 35.0% | |
| AGCAATCTTCTGTTGGATTA+TGG | - | chr5_3:7300066-7300085 | Msa0795360:intron | 35.0% | |
| GCAATCTTCTGTTGGATTAT+GGG | - | chr5_3:7300067-7300086 | Msa0795360:intron | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr5_3:7300165-7300184 | None:intergenic | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | - | chr5_3:7300333-7300352 | Msa0795360:intron | 35.0% | |
| !! | GACGAAGGGAGTATTATTTA+TGG | - | chr5_3:7300370-7300389 | Msa0795360:intron | 35.0% |
| GTCATCTTCTAGTATAACGA+AGG | + | chr5_3:7300555-7300574 | None:intergenic | 35.0% | |
| TCAAAAAAGGGAAGAATGTC+TGG | - | chr5_3:7300801-7300820 | Msa0795360:CDS | 35.0% | |
| !! | TGATTCAGTCTTGTTGATGC+TGG | + | chr5_3:7298852-7298871 | None:intergenic | 40.0% |
| ! | TGATTCCTTTTCCACAACAG+GGG | + | chr5_3:7298918-7298937 | None:intergenic | 40.0% |
| ! | CTGATTCCTTTTCCACAACA+GGG | + | chr5_3:7298919-7298938 | None:intergenic | 40.0% |
| ! | TCTGATTCCTTTTCCACAAC+AGG | + | chr5_3:7298920-7298939 | None:intergenic | 40.0% |
| AAGCAATATCAGTATCAGCC+AGG | - | chr5_3:7298946-7298965 | Msa0795360:CDS | 40.0% | |
| !! | CTGATCATCAAGTGTTGAGA+TGG | + | chr5_3:7298987-7299006 | None:intergenic | 40.0% |
| ! | AAACCTTAACTTGGGTTGCT+TGG | - | chr5_3:7299606-7299625 | Msa0795360:intron | 40.0% |
| AAAAGCTCATGCAGTGATCA+GGG | + | chr5_3:7299644-7299663 | None:intergenic | 40.0% | |
| CATGCTGGTAATAAGGAAAC+AGG | - | chr5_3:7299735-7299754 | Msa0795360:intron | 40.0% | |
| TGCTGGTAATAAGGAAACAG+GGG | - | chr5_3:7299737-7299756 | Msa0795360:intron | 40.0% | |
| ACAAAGGCAGAAAATAGGCA+AGG | - | chr5_3:7299958-7299977 | Msa0795360:intron | 40.0% | |
| ATCTTCTGTTGGATTATGGG+AGG | - | chr5_3:7300070-7300089 | Msa0795360:intron | 40.0% | |
| GGCACAACTCAAGAAATTTG+AGG | - | chr5_3:7300115-7300134 | Msa0795360:intron | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | + | chr5_3:7300164-7300183 | None:intergenic | 40.0% | |
| ! | CCAAACTGGCTCAGATAAAA+CGG | - | chr5_3:7300347-7300366 | Msa0795360:intron | 40.0% |
| ! | CAAACTGGCTCAGATAAAAC+GGG | - | chr5_3:7300348-7300367 | Msa0795360:intron | 40.0% |
| !! | AAGAGTGCTTAGAAGAGATG+CGG | + | chr5_3:7300578-7300597 | None:intergenic | 40.0% |
| CATCTCTTCTAAGCACTCTT+GGG | - | chr5_3:7300578-7300597 | Msa0795360:intron | 40.0% | |
| ! | ATTTCTTTGGTGCAACTCCA+CGG | + | chr5_3:7300858-7300877 | None:intergenic | 40.0% |
| CAAGTCATGGGAGAATCAGA+AGG | - | chr5_3:7298824-7298843 | Msa0795360:three_prime_UTR | 45.0% | |
| CAGGGCCGACCTAATATATT+TGG | - | chr5_3:7299367-7299386 | Msa0795360:intron | 45.0% | |
| GGCCGACCTAATATATTTGG+AGG | - | chr5_3:7299370-7299389 | Msa0795360:intron | 45.0% | |
| CAAAAGCTCATGCAGTGATC+AGG | + | chr5_3:7299645-7299664 | None:intergenic | 45.0% | |
| AAAGATGAAATGGTCGCGCA+GGG | - | chr5_3:7300034-7300053 | Msa0795360:CDS | 45.0% | |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | + | chr5_3:7300350-7300369 | None:intergenic | 45.0% |
| CTCAGATAAAACGGGACGAA+GGG | - | chr5_3:7300356-7300375 | Msa0795360:intron | 45.0% | |
| CGACACATTTCAGTTCCACA+AGG | + | chr5_3:7300472-7300491 | None:intergenic | 45.0% | |
| CGAACTTGTGCATGTAACAG+AGG | + | chr5_3:7300517-7300536 | None:intergenic | 45.0% | |
| ! | AGAGTGCTTAGAAGAGATGC+GGG | + | chr5_3:7300577-7300596 | None:intergenic | 45.0% |
| GCATCTCTTCTAAGCACTCT+TGG | - | chr5_3:7300577-7300596 | Msa0795360:intron | 45.0% | |
| ACCACAGCTACAGTCTCTTC+TGG | - | chr5_3:7298871-7298890 | Msa0795360:three_prime_UTR | 50.0% | |
| TCCAGAAGAGACTGTAGCTG+TGG | + | chr5_3:7298875-7298894 | None:intergenic | 50.0% | |
| GGGAAAGCTCTTCAGGAACA+GGG | + | chr5_3:7298898-7298917 | None:intergenic | 50.0% | |
| ACAACAGGGGAAAGCTCTTC+AGG | + | chr5_3:7298905-7298924 | None:intergenic | 50.0% | |
| TGAAGAGCTTTCCCCTGTTG+TGG | - | chr5_3:7298904-7298923 | Msa0795360:CDS | 50.0% | |
| GCTTTCCCCTGTTGTGGAAA+AGG | - | chr5_3:7298910-7298929 | Msa0795360:CDS | 50.0% | |
| GAGGTTGCAGATGATCATGC+TGG | - | chr5_3:7299720-7299739 | Msa0795360:CDS | 50.0% | |
| GAAAGATGAAATGGTCGCGC+AGG | - | chr5_3:7300033-7300052 | Msa0795360:CDS | 50.0% | |
| ATTAGTTACTCCCTCCGTCC+CGG | - | chr5_3:7300143-7300162 | Msa0795360:intron | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr5_3:7300160-7300179 | None:intergenic | 50.0% | |
| GCTCAGATAAAACGGGACGA+AGG | - | chr5_3:7300355-7300374 | Msa0795360:intron | 50.0% | |
| GACAAATCTCTCGAGCCTTG+TGG | - | chr5_3:7300454-7300473 | Msa0795360:intron | 50.0% | |
| ! | GGAAGAATGTCTGGAGCTAG+AGG | - | chr5_3:7300810-7300829 | Msa0795360:CDS | 50.0% |
| GGGGAAAGCTCTTCAGGAAC+AGG | + | chr5_3:7298899-7298918 | None:intergenic | 55.0% | |
| GTTGAGATGGCCTGCTGAGT+AGG | + | chr5_3:7298974-7298993 | None:intergenic | 55.0% | |
| GGGCCAAGCAACCCAAGTTA+AGG | + | chr5_3:7299612-7299631 | None:intergenic | 55.0% | |
| ! | AACTTGGGTTGCTTGGCCCT+TGG | - | chr5_3:7299613-7299632 | Msa0795360:intron | 55.0% |
| ! | ACTTGGGTTGCTTGGCCCTT+GGG | - | chr5_3:7299614-7299633 | Msa0795360:intron | 55.0% |
| !! | AGTGATCAGGGTTGGCCCAA+GGG | + | chr5_3:7299632-7299651 | None:intergenic | 55.0% |
| GCTCATGCAGTGATCAGGGT+TGG | + | chr5_3:7299640-7299659 | None:intergenic | 55.0% | |
| GCTAAGGGCTCAACTGACAG+AGG | - | chr5_3:7299780-7299799 | Msa0795360:intron | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | + | chr5_3:7300156-7300175 | None:intergenic | 55.0% | |
| GCTGCAAAGTTTCGTAGCCG+TGG | - | chr5_3:7300838-7300857 | Msa0795360:CDS | 55.0% | |
| !! | CAGTGATCAGGGTTGGCCCA+AGG | + | chr5_3:7299633-7299652 | None:intergenic | 60.0% |
| GGTCAGATATTCCGGGACGG+AGG | + | chr5_3:7300157-7300176 | None:intergenic | 60.0% | |
| CAGCCAGGAGCCTACTCAGC+AGG | - | chr5_3:7298961-7298980 | Msa0795360:CDS | 65.0% | |
| TGGCCTGCTGAGTAGGCTCC+TGG | + | chr5_3:7298967-7298986 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7298753 | 7301049 | 7298753 | ID=Msa0795360;Name=Msa0795360 |
| chr5_3 | mRNA | 7298753 | 7301049 | 7298753 | ID=Msa0795360-mRNA-1;Parent=Msa0795360;Name=Msa0795360-mRNA-1;_AED=0.39;_eAED=0.39;_QI=77|1|1|1|1|1|5|149|209 |
| chr5_3 | exon | 7298753 | 7299102 | 7298753 | ID=Msa0795360-mRNA-1:exon:3048;Parent=Msa0795360-mRNA-1 |
| chr5_3 | exon | 7299666 | 7299747 | 7299666 | ID=Msa0795360-mRNA-1:exon:3047;Parent=Msa0795360-mRNA-1 |
| chr5_3 | exon | 7299828 | 7299915 | 7299828 | ID=Msa0795360-mRNA-1:exon:3046;Parent=Msa0795360-mRNA-1 |
| chr5_3 | exon | 7300001 | 7300081 | 7300001 | ID=Msa0795360-mRNA-1:exon:3045;Parent=Msa0795360-mRNA-1 |
| chr5_3 | exon | 7300795 | 7301049 | 7300795 | ID=Msa0795360-mRNA-1:exon:3044;Parent=Msa0795360-mRNA-1 |
| chr5_3 | five_prime_UTR | 7300973 | 7301049 | 7300973 | ID=Msa0795360-mRNA-1:five_prime_utr;Parent=Msa0795360-mRNA-1 |
| chr5_3 | CDS | 7300795 | 7300972 | 7300795 | ID=Msa0795360-mRNA-1:cds;Parent=Msa0795360-mRNA-1 |
| chr5_3 | CDS | 7300001 | 7300081 | 7300001 | ID=Msa0795360-mRNA-1:cds;Parent=Msa0795360-mRNA-1 |
| chr5_3 | CDS | 7299828 | 7299915 | 7299828 | ID=Msa0795360-mRNA-1:cds;Parent=Msa0795360-mRNA-1 |
| chr5_3 | CDS | 7299666 | 7299747 | 7299666 | ID=Msa0795360-mRNA-1:cds;Parent=Msa0795360-mRNA-1 |
| chr5_3 | CDS | 7298902 | 7299102 | 7298902 | ID=Msa0795360-mRNA-1:cds;Parent=Msa0795360-mRNA-1 |
| chr5_3 | three_prime_UTR | 7298753 | 7298901 | 7298753 | ID=Msa0795360-mRNA-1:three_prime_utr;Parent=Msa0795360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
