AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0897200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897200 MtrunA17_Chr6g0482721 98.148 216 4 0 1 216 1 216 1.81e-159 439
Msa0897200 MtrunA17_Chr8g0392931 75.829 211 50 1 5 214 7 217 2.54e-110 315
Msa0897200 MtrunA17_Chr4g0040781 57.346 211 86 2 6 214 7 215 8.71e-88 258
Msa0897200 MtrunA17_Chr2g0283131 56.872 211 87 2 6 214 7 215 4.16e-87 256
Msa0897200 MtrunA17_Chr4g0046261 56.872 211 87 2 6 214 7 215 7.76e-87 255
Msa0897200 MtrunA17_Chr2g0325091 57.619 210 86 3 6 214 5 212 3.25e-86 254
Msa0897200 MtrunA17_Chr2g0315551 56.938 209 90 0 6 214 7 215 2.38e-85 251
Msa0897200 MtrunA17_Chr3g0112681 52.336 214 102 0 1 214 1 214 1.84e-80 239
Msa0897200 MtrunA17_Chr4g0032201 53.488 215 97 3 1 214 1 213 1.07e-79 237
Msa0897200 MtrunA17_Chr2g0319951 55.238 210 93 1 6 214 7 216 3.51e-79 236
Msa0897200 MtrunA17_Chr2g0276941 53.333 210 97 1 6 214 9 218 1.57e-77 232
Msa0897200 MtrunA17_Chr8g0381841 53.023 215 93 4 6 214 11 223 3.20e-75 226
Msa0897200 MtrunA17_Chr3g0123821 50.943 212 101 1 6 214 10 221 8.10e-75 225
Msa0897200 MtrunA17_Chr7g0231131 49.302 215 105 2 5 216 8 221 9.33e-72 217
Msa0897200 MtrunA17_Chr1g0174281 47.907 215 107 2 5 214 8 222 3.48e-70 213
Msa0897200 MtrunA17_Chr8g0346421 48.611 216 101 2 5 214 19 230 9.22e-70 213
Msa0897200 MtrunA17_Chr7g0275991 48.611 216 99 2 7 214 15 226 1.31e-69 212
Msa0897200 MtrunA17_Chr1g0189361 59.538 173 70 0 10 182 12 184 2.27e-69 211
Msa0897200 MtrunA17_Chr8g0351861 50.000 220 94 4 7 214 11 226 4.08e-66 203
Msa0897200 MtrunA17_Chr7g0214241 56.977 172 74 0 11 182 14 185 8.10e-66 202
Msa0897200 MtrunA17_Chr7g0234201 55.497 191 80 1 11 196 12 202 1.32e-65 201
Msa0897200 MtrunA17_Chr6g0458081 54.268 164 75 0 10 173 4 167 1.78e-57 181
Msa0897200 MtrunA17_Chr2g0290891 52.695 167 79 0 11 177 5 171 1.06e-55 176
Msa0897200 MtrunA17_Chr8g0349711 48.677 189 92 2 11 194 5 193 6.66e-55 174
Msa0897200 MtrunA17_Chr2g0276931 43.902 205 106 1 10 214 7 202 2.34e-54 172
Msa0897200 MtrunA17_Chr4g0055651 48.925 186 93 2 5 189 1 185 3.59e-54 172
Msa0897200 MtrunA17_Chr7g0250531 46.597 191 100 1 10 198 6 196 2.40e-53 170
Msa0897200 MtrunA17_Chr8g0335471 48.588 177 91 0 5 181 1 177 4.27e-53 169
Msa0897200 MtrunA17_Chr8g0349681 52.299 174 78 1 11 184 383 551 2.04e-52 177
Msa0897200 MtrunA17_Chr8g0349681 46.196 184 97 1 11 192 174 357 3.06e-49 169
Msa0897200 MtrunA17_Chr8g0349681 50.314 159 79 0 11 169 12 170 8.91e-47 162
Msa0897200 MtrunA17_Chr1g0182321 40.777 206 117 2 10 214 13 214 2.84e-50 162
Msa0897200 MtrunA17_Chr1g0182301 40.291 206 118 2 10 214 13 214 9.89e-50 161
Msa0897200 MtrunA17_Chr8g0384311 48.851 174 86 3 7 178 8 180 2.41e-49 160
Msa0897200 MtrunA17_Chr1g0212521 40.952 210 111 4 10 214 13 214 2.55e-49 160
Msa0897200 MtrunA17_Chr7g0263071 42.781 187 106 1 10 195 13 199 1.60e-48 158
Msa0897200 MtrunA17_Chr4g0030911 47.273 165 86 1 10 173 13 177 2.87e-48 157
Msa0897200 MtrunA17_Chr1g0159481 49.708 171 83 3 10 178 15 184 3.63e-48 157
Msa0897200 MtrunA17_Chr3g0109721 46.875 160 85 0 14 173 12 171 3.29e-47 154
Msa0897200 MtrunA17_Chr5g0433561 45.625 160 87 0 14 173 12 171 1.13e-46 152
Msa0897200 MtrunA17_Chr3g0130271 46.961 181 92 4 1 178 1 180 7.50e-46 151
Msa0897200 MtrunA17_Chr7g0265001 43.961 207 107 4 10 214 14 213 4.53e-44 146
Msa0897200 MtrunA17_Chr2g0327911 43.529 170 94 2 6 173 9 178 1.15e-43 145
Msa0897200 MtrunA17_Chr8g0390561 38.857 175 107 0 14 188 11 185 1.45e-42 142
Msa0897200 MtrunA17_Chr1g0197331 47.093 172 88 3 10 178 13 184 2.57e-42 142
Msa0897200 MtrunA17_Chr1g0199331 43.478 161 90 1 14 173 33 193 2.96e-42 141
Msa0897200 MtrunA17_Chr3g0123971 37.931 174 108 0 13 186 10 183 3.53e-42 141
Msa0897200 MtrunA17_Chr1g0180291 42.995 207 108 5 10 214 12 210 4.48e-42 141
Msa0897200 MtrunA17_Chr8g0382221 37.288 177 109 1 13 187 10 186 3.96e-41 139
Msa0897200 MtrunA17_Chr5g0400131 40.909 154 91 0 13 166 10 163 1.02e-39 135
Msa0897200 MtrunA17_Chr4g0055081 39.610 154 93 0 13 166 10 163 2.32e-39 134
Msa0897200 MtrunA17_Chr2g0331691 38.690 168 95 4 12 172 10 176 6.88e-33 117
Msa0897200 MtrunA17_Chr8g0383261 39.877 163 91 3 12 167 12 174 8.25e-33 117
Msa0897200 MtrunA17_Chr6g0466301 37.576 165 96 3 12 169 8 172 9.16e-33 117
Msa0897200 MtrunA17_Chr6g0465491 37.576 165 96 3 12 169 8 172 9.16e-33 117
Msa0897200 MtrunA17_Chr4g0034871 37.037 162 95 3 12 166 8 169 1.18e-32 117
Msa0897200 MtrunA17_Chr1g0201121 37.423 163 95 3 12 167 8 170 5.33e-31 112
Msa0897200 MtrunA17_Chr4g0004661 37.037 162 95 3 12 166 64 225 8.81e-31 114
Msa0897200 MtrunA17_Chr3g0138121 33.333 174 112 4 1 173 1 171 1.59e-23 94.0
Msa0897200 MtrunA17_Chr3g0138101 33.333 174 112 4 1 173 1 171 1.64e-23 94.0
Msa0897200 MtrunA17_Chr3g0138111 33.333 174 112 4 1 173 1 171 1.71e-23 93.6
Msa0897200 MtrunA17_Chr6g0466161 36.486 148 87 3 27 167 5 152 1.77e-23 93.6
Msa0897200 MtrunA17_Chr6g0465471 36.486 148 87 3 27 167 5 152 1.87e-23 93.2
Msa0897200 MtrunA17_Chr2g0331841 58.621 58 24 0 81 138 2 59 3.53e-17 73.6
Msa0897200 MtrunA17_Chr6g0466431 37.624 101 54 1 12 112 8 99 1.13e-16 72.8
Msa0897200 MtrunA17_Chr6g0465611 37.624 101 54 1 12 112 8 99 1.13e-16 72.8
Msa0897200 MtrunA17_Chr2g0325101 34.677 124 78 3 12 134 6 127 1.75e-16 74.7
Msa0897200 MtrunA17_Chr4g0046211 33.871 124 79 3 12 134 6 127 1.80e-16 73.2
Msa0897200 MtrunA17_Chr4g0037021 33.103 145 87 4 12 155 6 141 3.52e-16 73.9
Msa0897200 MtrunA17_Chr6g0486041 27.461 193 126 5 12 192 6 196 5.37e-16 73.6
Msa0897200 MtrunA17_Chr5g0405791 33.871 124 79 3 12 134 6 127 6.15e-16 73.2
Msa0897200 MtrunA17_Chr8g0371501 30.303 165 102 5 12 172 6 161 1.05e-15 72.4
Msa0897200 MtrunA17_Chr3g0117931 28.977 176 108 6 12 172 8 181 3.38e-15 71.2
Msa0897200 MtrunA17_Chr1g0178291 33.758 157 94 5 17 170 433 582 5.21e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897200 AT1G73640.1 63.755 229 67 3 3 215 4 232 1.08e-102 296
Msa0897200 AT1G18200.1 64.000 225 69 3 3 215 4 228 1.58e-102 296
Msa0897200 AT5G60860.1 56.398 211 88 2 6 214 7 215 2.85e-87 257
Msa0897200 AT1G16920.1 58.049 205 85 1 10 214 11 214 9.96e-86 253
Msa0897200 AT4G18430.1 56.808 213 88 2 6 216 7 217 3.82e-85 251
Msa0897200 AT5G45750.1 57.416 209 88 1 6 214 7 214 2.32e-84 249
Msa0897200 AT2G33870.1 56.522 207 87 2 10 214 11 216 7.16e-84 248
Msa0897200 AT3G15060.1 55.450 211 90 2 6 214 7 215 1.42e-83 248
Msa0897200 AT1G28550.1 55.556 207 89 2 10 214 11 216 3.24e-83 246
Msa0897200 AT1G06400.1 56.667 210 88 2 6 214 7 214 4.97e-82 243
Msa0897200 AT1G09630.1 52.336 214 102 0 1 214 1 214 1.36e-81 243
Msa0897200 AT4G18800.1 55.981 209 89 1 6 214 7 212 5.93e-81 241
Msa0897200 AT1G07410.1 53.738 214 97 2 1 214 1 212 3.20e-79 236
Msa0897200 AT5G47960.1 51.643 213 100 1 5 214 8 220 5.50e-75 226
Msa0897200 AT5G65270.1 53.271 214 93 3 7 214 12 224 1.29e-74 225
Msa0897200 AT4G39990.1 52.381 210 96 2 8 214 13 221 1.47e-74 225
Msa0897200 AT3G46830.1 52.093 215 102 1 1 214 1 215 6.01e-74 223
Msa0897200 AT3G46830.2 52.093 215 102 1 1 214 1 215 6.01e-74 223
Msa0897200 AT3G12160.1 51.643 213 99 2 5 214 8 219 2.30e-73 222
Msa0897200 AT5G59150.1 51.389 216 102 3 1 214 1 215 7.09e-73 220
Msa0897200 AT5G47520.1 54.245 212 94 2 6 214 8 219 5.56e-71 216
Msa0897200 AT2G31680.1 51.208 207 99 1 10 214 10 216 4.35e-67 206
Msa0897200 AT2G43130.1 49.065 214 107 1 1 214 1 212 2.75e-65 201
Msa0897200 AT1G01200.1 46.575 219 105 4 4 213 20 235 4.45e-65 201
Msa0897200 AT1G05810.1 48.357 213 95 3 10 214 10 215 1.97e-64 199
Msa0897200 AT3G07410.1 50.485 206 101 1 10 214 10 215 2.27e-64 199
Msa0897200 AT1G05810.2 48.357 213 95 3 10 214 56 261 5.31e-64 199
Msa0897200 AT4G35860.1 46.377 207 109 1 10 214 4 210 1.29e-58 184
Msa0897200 AT4G17170.1 52.695 167 79 0 11 177 5 171 6.78e-56 177
Msa0897200 AT4G17160.1 46.117 206 103 3 11 214 5 204 6.17e-55 174
Msa0897200 AT1G02130.1 48.023 177 92 0 5 181 1 177 1.34e-53 171
Msa0897200 AT5G47200.1 43.602 211 107 4 5 214 1 200 5.90e-53 169
Msa0897200 AT3G11730.1 45.550 191 104 0 10 200 6 196 9.15e-53 169
Msa0897200 AT4G17530.1 43.602 211 107 4 5 214 1 200 1.17e-52 168
Msa0897200 AT5G03520.1 42.029 207 115 2 10 215 13 215 3.62e-49 160
Msa0897200 AT3G53610.2 40.952 210 111 3 10 214 13 214 4.45e-49 160
Msa0897200 AT3G53610.3 40.952 210 111 3 10 214 13 214 4.45e-49 160
Msa0897200 AT3G53610.1 40.952 210 111 3 10 214 13 214 4.45e-49 160
Msa0897200 AT5G59840.1 41.262 206 116 2 10 214 13 214 5.65e-49 159
Msa0897200 AT1G43890.3 50.292 171 82 3 10 178 11 180 1.49e-48 158
Msa0897200 AT1G43890.1 50.292 171 82 3 10 178 11 180 1.49e-48 158
Msa0897200 AT1G43890.2 50.292 171 82 3 10 178 11 180 1.49e-48 158
Msa0897200 AT3G46060.2 41.262 206 116 2 10 214 13 214 4.15e-48 157
Msa0897200 AT3G46060.3 41.262 206 116 2 10 214 13 214 4.15e-48 157
Msa0897200 AT3G46060.1 41.262 206 116 2 10 214 13 214 4.15e-48 157
Msa0897200 AT5G45130.1 42.391 184 100 1 14 197 12 189 8.54e-48 156
Msa0897200 AT5G59150.2 48.466 163 81 3 54 214 3 164 1.94e-47 154
Msa0897200 AT3G09900.1 40.291 206 119 2 10 214 13 215 4.52e-47 155
Msa0897200 AT5G45130.2 42.308 182 99 1 16 197 22 197 6.19e-47 154
Msa0897200 AT4G19640.1 41.209 182 101 1 14 195 12 187 2.69e-46 152
Msa0897200 AT5G03530.2 43.478 207 107 5 10 214 11 209 1.63e-43 145
Msa0897200 AT5G03530.1 43.478 207 107 5 10 214 11 209 1.63e-43 145
Msa0897200 AT4G39890.1 40.476 168 99 1 13 179 10 177 2.14e-43 145
Msa0897200 AT3G54840.1 45.223 157 85 1 14 169 35 191 9.89e-42 140
Msa0897200 AT4G35860.2 44.172 163 89 1 54 214 2 164 1.14e-41 139
Msa0897200 AT3G54840.3 45.161 155 84 1 16 169 3 157 1.15e-41 139
Msa0897200 AT3G54840.2 45.455 154 83 1 14 166 35 188 1.60e-41 140
Msa0897200 AT2G22290.1 36.994 173 109 0 13 185 10 182 8.14e-41 138
Msa0897200 AT5G10260.1 40.909 154 91 0 13 166 10 163 7.85e-40 135
Msa0897200 AT5G64990.1 33.990 203 126 2 13 213 8 204 1.20e-38 132
Msa0897200 AT3G09910.3 46.199 171 89 3 10 178 11 180 2.58e-38 132
Msa0897200 AT3G09910.1 46.199 171 89 3 10 178 11 180 2.58e-38 132
Msa0897200 AT3G09910.2 46.199 171 89 3 10 178 11 180 2.58e-38 132
Msa0897200 AT2G44610.1 39.610 154 93 0 13 166 10 163 3.63e-38 131
Msa0897200 AT3G09910.5 44.262 183 94 4 10 190 11 187 1.54e-37 129
Msa0897200 AT3G09910.4 44.262 183 94 4 10 190 11 187 1.54e-37 129
Msa0897200 AT4G19640.3 45.802 131 71 0 14 144 12 142 7.98e-37 127
Msa0897200 AT4G19640.2 46.032 126 68 0 14 139 12 137 2.19e-36 125
Msa0897200 AT5G03520.2 38.235 170 100 2 47 215 40 205 3.49e-36 126
Msa0897200 AT5G64990.2 32.857 210 126 3 13 213 8 211 8.29e-36 125
Msa0897200 AT1G22740.1 39.645 169 94 5 12 173 8 175 7.42e-34 120
Msa0897200 AT1G52280.1 37.500 168 97 4 12 172 8 174 1.10e-32 117
Msa0897200 AT3G18820.1 37.654 162 94 3 12 166 8 169 3.98e-32 116
Msa0897200 AT4G09720.1 36.970 165 97 4 12 169 8 172 1.03e-31 115
Msa0897200 AT1G49300.2 36.527 167 99 3 12 171 8 174 1.20e-31 115
Msa0897200 AT1G49300.1 36.527 167 99 3 12 171 8 174 1.20e-31 115
Msa0897200 AT4G09720.4 36.471 170 96 4 12 169 8 177 4.61e-31 113
Msa0897200 AT2G21880.1 35.152 165 100 3 12 169 9 173 1.53e-30 112
Msa0897200 AT4G09720.3 35.227 176 96 3 12 169 8 183 2.96e-30 111
Msa0897200 AT3G16100.1 36.310 168 99 4 12 172 8 174 3.38e-30 111
Msa0897200 AT5G39620.1 37.126 167 98 3 13 172 6 172 6.10e-30 110
Msa0897200 AT5G46025.1 46.226 106 56 1 74 178 6 111 2.67e-27 100
Msa0897200 AT5G55080.1 31.056 161 108 3 13 173 14 171 6.14e-24 95.5
Msa0897200 AT5G20020.1 33.333 174 112 4 1 173 1 171 2.24e-23 94.0
Msa0897200 AT5G55190.1 33.333 174 112 4 1 173 1 171 2.29e-23 94.0
Msa0897200 AT5G20010.1 33.333 174 112 4 1 173 1 171 2.47e-23 93.6
Msa0897200 AT2G21880.4 29.545 176 109 4 29 197 1 168 2.20e-22 90.5
Msa0897200 AT2G21880.3 29.545 176 109 4 29 197 1 168 2.20e-22 90.5
Msa0897200 AT4G09720.6 37.037 135 78 4 42 169 4 138 4.18e-22 89.4
Msa0897200 AT4G09720.5 37.037 135 78 4 42 169 4 138 4.18e-22 89.4
Msa0897200 AT4G09720.2 37.037 135 78 4 42 169 4 138 4.18e-22 89.4
Msa0897200 AT2G44690.1 32.474 194 113 6 12 193 18 205 5.84e-22 89.7
Msa0897200 AT2G21880.2 30.303 165 100 4 12 169 9 165 8.40e-21 86.7
Msa0897200 AT4G35020.1 32.335 167 100 5 12 174 6 163 2.46e-17 77.4
Msa0897200 AT4G35020.2 32.335 167 100 5 12 174 6 163 2.46e-17 77.4
Msa0897200 AT4G35020.3 32.335 167 100 5 12 174 6 163 2.46e-17 77.4
Msa0897200 AT5G45970.1 33.333 129 83 3 12 139 6 132 1.47e-15 72.4
Msa0897200 AT1G20090.1 34.677 124 78 3 12 134 5 126 1.70e-15 72.4
Msa0897200 AT1G75840.1 33.871 124 79 3 12 134 6 127 2.59e-15 71.6
Msa0897200 AT2G17800.2 29.167 168 106 5 12 175 6 164 3.05e-15 71.6
Msa0897200 AT2G17800.1 29.167 168 106 5 12 175 6 164 3.05e-15 71.6
Msa0897200 AT4G28950.1 33.613 119 76 3 12 129 6 122 3.42e-15 71.6
Msa0897200 AT3G51300.1 33.607 122 78 3 14 134 8 127 4.19e-15 71.2
Msa0897200 AT4G35950.1 33.065 124 80 3 12 134 6 127 4.84e-15 71.2
Msa0897200 AT5G62880.2 28.000 175 113 5 12 182 8 173 2.55e-14 68.9
Msa0897200 AT4G35020.4 36.842 114 69 3 14 126 8 119 2.96e-14 67.8
Msa0897200 AT4G35020.5 36.842 114 69 3 14 126 8 119 2.96e-14 67.8
Msa0897200 AT3G48040.2 32.258 124 81 3 12 134 8 129 3.02e-14 68.6
Msa0897200 AT3G48040.1 32.258 124 81 3 12 134 8 129 3.65e-14 68.9
Msa0897200 AT4G08190.1 43.750 64 33 1 103 166 67 127 5.46e-11 58.5

Find 49 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTTCTTTGGAATTAA+AGG 0.161579 6_1:-88775529 Msa0897200:five_prime_UTR
CCCTATTAGTCTTCTTTCTT+TGG 0.174362 6_1:-88775538 Msa0897200:five_prime_UTR
CTCTTCAAAACCGTTCTAAT+TGG 0.205120 6_1:-88775391 Msa0897200:CDS
ACCGTTCTAATTGGAGATTC+TGG 0.213565 6_1:-88775382 Msa0897200:CDS
AGCTCATCAAAGCACAAATA+TGG 0.246432 6_1:-88775249 Msa0897200:CDS
AAAATGAATGGGACAAAATT+AGG 0.248904 6_1:-88771703 Msa0897200:CDS
TTAATTCACCCCTTACAAAT+TGG 0.255951 6_1:+88771486 None:intergenic
TCCAAAGAAAGAAGACTAAT+AGG 0.264491 6_1:+88775537 None:intergenic
GCTTAGAGATAAATTAATTA+AGG 0.288422 6_1:-88775481 Msa0897200:five_prime_UTR
CCAACCATAGGTGTGGAATT+TGG 0.291621 6_1:-88775298 Msa0897200:CDS
AAACAAGTTAATTGTTGTTA+TGG 0.292644 6_1:-88771631 Msa0897200:CDS
TTACATGAGCTTAGAGAATA+TGG 0.310652 6_1:-88771937 Msa0897200:CDS
CTTCTTTCTTTGGAATTAAA+GGG 0.321247 6_1:-88775528 Msa0897200:five_prime_UTR
CATATATTATATATTATATA+TGG 0.341325 6_1:-88775443 Msa0897200:exon
TATCATAAGCCATAAAAGTT+TGG 0.376145 6_1:-88771731 Msa0897200:CDS
ATATGAATTTCCTTTCCATT+AGG 0.394629 6_1:+88771676 None:intergenic
ACAAAATTAGGTCTTCCTAA+TGG 0.406139 6_1:-88771691 Msa0897200:CDS
CTAATTGGAGATTCTGGAGT+TGG 0.427347 6_1:-88775376 Msa0897200:CDS
TTGAGAAAGAAGAAGGAAAA+GGG 0.430619 6_1:-88771852 Msa0897200:CDS
TTCCACACCTATGGTTGGCT+TGG 0.432211 6_1:+88775303 None:intergenic
GGAAATCAAACCTTATTTCA+AGG 0.434954 6_1:-88775354 Msa0897200:CDS
GTTGAGAAAGAAGAAGGAAA+AGG 0.437694 6_1:-88771853 Msa0897200:CDS
CTCATACTATAGAGGAGCAT+TGG 0.452045 6_1:-88772019 Msa0897200:CDS
CCAAAGAAAGAAGACTAATA+GGG 0.455350 6_1:+88775538 None:intergenic
TAATTGGAGATTCTGGAGTT+GGG 0.471690 6_1:-88775375 Msa0897200:CDS
GCTCATCAAAGCACAAATAT+GGG 0.473052 6_1:-88775248 Msa0897200:CDS
AGGGAGGTTGAGAAAGAAGA+AGG 0.473377 6_1:-88771859 Msa0897200:CDS
TGCTAGTCTATGACATAAGC+AGG 0.474696 6_1:-88771990 Msa0897200:CDS
GTAACCAAATTCCACACCTA+TGG 0.475678 6_1:+88775294 None:intergenic
TCATACTATAGAGGAGCATT+GGG 0.482212 6_1:-88772018 Msa0897200:CDS
AATCTGATTTGAGTCAATCA+AGG 0.488203 6_1:-88771879 Msa0897200:CDS
AGTTTGGAAGATAAAATGAA+TGG 0.501277 6_1:-88771715 Msa0897200:CDS
ATCACAAGCTCATACTATAG+AGG 0.512214 6_1:-88772027 Msa0897200:CDS
ATTAAAGGGTATTACAAAAG+AGG 0.515732 6_1:-88775514 Msa0897200:five_prime_UTR
AAAGGGTTTGCAGAAAGAGA+AGG 0.525911 6_1:-88771835 Msa0897200:CDS
GTTTGGAAGATAAAATGAAT+GGG 0.531416 6_1:-88771714 Msa0897200:CDS
TTTGCAAAATTTAAATGTTG+AGG 0.537036 6_1:-88771788 Msa0897200:CDS
CTTGATTCCAAGCCAACCAT+AGG 0.558383 6_1:-88775310 Msa0897200:CDS
CCAAATTCCACACCTATGGT+TGG 0.560911 6_1:+88775298 None:intergenic
ATTTGGTTACAAGAACATCA+AGG 0.563030 6_1:-88775281 Msa0897200:CDS
TCCAGAATCTCCAATTAGAA+CGG 0.576110 6_1:+88775381 None:intergenic
ATTAGGTCTTCCTAATGGAA+AGG 0.586847 6_1:-88771686 Msa0897200:CDS
ATCTGATTTGAGTCAATCAA+GGG 0.595502 6_1:-88771878 Msa0897200:CDS
GCACAAATATGGGACACTGC+CGG 0.604045 6_1:-88775238 Msa0897200:CDS
GGGACACTGCCGGCCAAGAG+AGG 0.610199 6_1:-88775228 Msa0897200:intron
TTCCAAGCCAACCATAGGTG+TGG 0.621032 6_1:-88775305 Msa0897200:CDS
TGATTTGAGTCAATCAAGGG+AGG 0.654426 6_1:-88771875 Msa0897200:CDS
AGAATATGGAAATGAAGACA+TGG 0.654561 6_1:-88771923 Msa0897200:CDS
AAGAAAGAAGACTAATAGGG+AGG 0.671639 6_1:+88775541 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATTGTTTTATTTAAAT+AGG - chr6_1:88771921-88771940 Msa0897200:CDS 10.0%
!!! TGTATTGTTTTATTTAAATA+GGG - chr6_1:88771922-88771941 Msa0897200:CDS 10.0%
!! TAAAAATATTCAAAAGTTTA+AGG - chr6_1:88773494-88773513 Msa0897200:intron 10.0%
!! AATTAGTACATAAATTAAAT+TGG - chr6_1:88773864-88773883 Msa0897200:intron 10.0%
!!! TTTTCTTTAAGAAAAAAAAA+AGG + chr6_1:88774752-88774771 None:intergenic 10.0%
!!! ATTTTTAAATTTTGCAATAT+TGG - chr6_1:88774944-88774963 Msa0897200:intron 10.0%
!!! CTTTTGTTAATATAAAAAAA+TGG - chr6_1:88775129-88775148 Msa0897200:intron 10.0%
!!! ATGTATTGTTTTATTTAAAT+AGG - chr6_1:88771921-88771940 Msa0897200:CDS 10.0%
!!! TGTATTGTTTTATTTAAATA+GGG - chr6_1:88771922-88771941 Msa0897200:CDS 10.0%
!! TAAAAATATTCAAAAGTTTA+AGG - chr6_1:88773494-88773513 Msa0897200:intron 10.0%
!! AATTAGTACATAAATTAAAT+TGG - chr6_1:88773864-88773883 Msa0897200:intron 10.0%
!!! TTTTCTTTAAGAAAAAAAAA+AGG + chr6_1:88774752-88774771 None:intergenic 10.0%
!!! ATTTTTAAATTTTGCAATAT+TGG - chr6_1:88774944-88774963 Msa0897200:intron 10.0%
!!! CTTTTGTTAATATAAAAAAA+TGG - chr6_1:88775129-88775148 Msa0897200:intron 10.0%
!! AAACAAACAAAAATATCATT+TGG - chr6_1:88771508-88771527 Msa0897200:three_prime_UTR 15.0%
!!! CCTTTAGTTTTATTTATTTA+CGG + chr6_1:88772665-88772684 None:intergenic 15.0%
!!! TAATTTTTCGTCAAAATAAA+AGG - chr6_1:88772969-88772988 Msa0897200:intron 15.0%
!! ACTATTTGCATATAATAAAA+TGG - chr6_1:88773431-88773450 Msa0897200:intron 15.0%
!!! ACAAAAAATAAATGCTTTTT+TGG - chr6_1:88773739-88773758 Msa0897200:intron 15.0%
!!! AAAATAAAAAGCATTTTGAT+GGG + chr6_1:88774919-88774938 None:intergenic 15.0%
!!! TAAAATAAAAAGCATTTTGA+TGG + chr6_1:88774920-88774939 None:intergenic 15.0%
!!! TAAATATGTGTACAATTTTA+TGG - chr6_1:88775024-88775043 Msa0897200:intron 15.0%
!!! TTTGTATTATTCTTTTAGTT+TGG - chr6_1:88775553-88775572 Msa0897200:five_prime_UTR 15.0%
!!! TTGTATTATTCTTTTAGTTT+GGG - chr6_1:88775554-88775573 Msa0897200:five_prime_UTR 15.0%
!! AAACAAACAAAAATATCATT+TGG - chr6_1:88771508-88771527 Msa0897200:three_prime_UTR 15.0%
!!! CCTTTAGTTTTATTTATTTA+CGG + chr6_1:88772665-88772684 None:intergenic 15.0%
!!! TAATTTTTCGTCAAAATAAA+AGG - chr6_1:88772969-88772988 Msa0897200:intron 15.0%
!! ACTATTTGCATATAATAAAA+TGG - chr6_1:88773431-88773450 Msa0897200:intron 15.0%
!!! ACAAAAAATAAATGCTTTTT+TGG - chr6_1:88773739-88773758 Msa0897200:intron 15.0%
!!! AAAATAAAAAGCATTTTGAT+GGG + chr6_1:88774919-88774938 None:intergenic 15.0%
!!! TAAAATAAAAAGCATTTTGA+TGG + chr6_1:88774920-88774939 None:intergenic 15.0%
!!! TAAATATGTGTACAATTTTA+TGG - chr6_1:88775024-88775043 Msa0897200:intron 15.0%
!!! TTTGTATTATTCTTTTAGTT+TGG - chr6_1:88775553-88775572 Msa0897200:five_prime_UTR 15.0%
!!! TTGTATTATTCTTTTAGTTT+GGG - chr6_1:88775554-88775573 Msa0897200:five_prime_UTR 15.0%
!! GCTTAGAGATAAATTAATTA+AGG - chr6_1:88771608-88771627 Msa0897200:exon 20.0%
!! AATATGATAGATAAAATTGG+AGG + chr6_1:88772093-88772112 None:intergenic 20.0%
!! CTGAATATGATAGATAAAAT+TGG + chr6_1:88772096-88772115 None:intergenic 20.0%
!!! TTTTATCTATCATATTCAGT+CGG - chr6_1:88772097-88772116 Msa0897200:intron 20.0%
!! AAACATATGAAACACATATA+CGG - chr6_1:88772161-88772180 Msa0897200:intron 20.0%
!!! AGATCTTTTCAAATTATTGA+CGG + chr6_1:88772228-88772247 None:intergenic 20.0%
!! CCGTAAATAAATAAAACTAA+AGG - chr6_1:88772662-88772681 Msa0897200:intron 20.0%
!! CAAAAACTAATTAAAAGTCA+GGG - chr6_1:88772805-88772824 Msa0897200:intron 20.0%
!! TGTATAACTAGAATAATTTC+AGG - chr6_1:88772882-88772901 Msa0897200:intron 20.0%
!! TAAATTATAAGCTTGACATT+AGG - chr6_1:88772938-88772957 Msa0897200:intron 20.0%
!! ATTCAGTCAAAAAGAAAATA+TGG - chr6_1:88773053-88773072 Msa0897200:intron 20.0%
!! TTCTTATATCAATATCAACA+CGG - chr6_1:88773080-88773099 Msa0897200:intron 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG + chr6_1:88773190-88773209 None:intergenic 20.0%
!!! ATTATTGAGTTATTGATTGT+GGG + chr6_1:88774583-88774602 None:intergenic 20.0%
!! TTTCTTAAAGAAAATTTAGC+AGG - chr6_1:88774758-88774777 Msa0897200:intron 20.0%
!! TTCTTAAAGAAAATTTAGCA+GGG - chr6_1:88774759-88774778 Msa0897200:intron 20.0%
!! TTTGCAAAATTTAAATGTTG+AGG - chr6_1:88775301-88775320 Msa0897200:CDS 20.0%
!!! TTTTATCTTCCAAACTTTTA+TGG + chr6_1:88775370-88775389 None:intergenic 20.0%
!!! AAACAAGTTAATTGTTGTTA+TGG - chr6_1:88775458-88775477 Msa0897200:five_prime_UTR 20.0%
!! GCTTAGAGATAAATTAATTA+AGG - chr6_1:88771608-88771627 Msa0897200:exon 20.0%
!! AATATGATAGATAAAATTGG+AGG + chr6_1:88772093-88772112 None:intergenic 20.0%
!! CTGAATATGATAGATAAAAT+TGG + chr6_1:88772096-88772115 None:intergenic 20.0%
!!! TTTTATCTATCATATTCAGT+CGG - chr6_1:88772097-88772116 Msa0897200:intron 20.0%
!! AAACATATGAAACACATATA+CGG - chr6_1:88772161-88772180 Msa0897200:intron 20.0%
!!! AGATCTTTTCAAATTATTGA+CGG + chr6_1:88772228-88772247 None:intergenic 20.0%
!! CCGTAAATAAATAAAACTAA+AGG - chr6_1:88772662-88772681 Msa0897200:intron 20.0%
!! CAAAAACTAATTAAAAGTCA+GGG - chr6_1:88772805-88772824 Msa0897200:intron 20.0%
!! TGTATAACTAGAATAATTTC+AGG - chr6_1:88772882-88772901 Msa0897200:intron 20.0%
!! TAAATTATAAGCTTGACATT+AGG - chr6_1:88772938-88772957 Msa0897200:intron 20.0%
!! ATTCAGTCAAAAAGAAAATA+TGG - chr6_1:88773053-88773072 Msa0897200:intron 20.0%
!! TTCTTATATCAATATCAACA+CGG - chr6_1:88773080-88773099 Msa0897200:intron 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG + chr6_1:88773190-88773209 None:intergenic 20.0%
!!! ATTATTGAGTTATTGATTGT+GGG + chr6_1:88774583-88774602 None:intergenic 20.0%
!! TTTCTTAAAGAAAATTTAGC+AGG - chr6_1:88774758-88774777 Msa0897200:intron 20.0%
!! TTCTTAAAGAAAATTTAGCA+GGG - chr6_1:88774759-88774778 Msa0897200:intron 20.0%
!! TTTGCAAAATTTAAATGTTG+AGG - chr6_1:88775301-88775320 Msa0897200:CDS 20.0%
!!! TTTTATCTTCCAAACTTTTA+TGG + chr6_1:88775370-88775389 None:intergenic 20.0%
!!! AAACAAGTTAATTGTTGTTA+TGG - chr6_1:88775458-88775477 Msa0897200:five_prime_UTR 20.0%
!!! TCTTCTTTCTTTGGAATTAA+AGG - chr6_1:88771560-88771579 Msa0897200:three_prime_UTR 25.0%
!!! CTTCTTTCTTTGGAATTAAA+GGG - chr6_1:88771561-88771580 Msa0897200:three_prime_UTR 25.0%
!!! ATTAAAGGGTATTACAAAAG+AGG - chr6_1:88771575-88771594 Msa0897200:three_prime_UTR 25.0%
!! CTTTTGTAAACCTTGAAATA+AGG + chr6_1:88771748-88771767 None:intergenic 25.0%
! AAAAAAAAAGTTACCTCTCT+TGG + chr6_1:88771877-88771896 None:intergenic 25.0%
!!! GTTTTGTTGTTTTGTTTCAA+TGG - chr6_1:88772011-88772030 Msa0897200:CDS 25.0%
! TAGTGAATATTCAAGAGATA+TGG + chr6_1:88772134-88772153 None:intergenic 25.0%
! CATAAAAGGTTTATGAAACA+CGG + chr6_1:88772345-88772364 None:intergenic 25.0%
! TTTCAACTTTACTACTCATA+CGG - chr6_1:88772734-88772753 Msa0897200:intron 25.0%
! ATTTCAAGATATCGTTATCA+AGG + chr6_1:88772762-88772781 None:intergenic 25.0%
! GCAAAAACTAATTAAAAGTC+AGG - chr6_1:88772804-88772823 Msa0897200:intron 25.0%
! TAACCAAACTTATACTCAAT+TGG + chr6_1:88772834-88772853 None:intergenic 25.0%
!!! GTATAAGTTTGGTTATTTTG+TGG - chr6_1:88772839-88772858 Msa0897200:intron 25.0%
! ATAACTAGAATAATTTCAGG+TGG - chr6_1:88772885-88772904 Msa0897200:intron 25.0%
!! TAACTAGAATAATTTCAGGT+GGG - chr6_1:88772886-88772905 Msa0897200:intron 25.0%
!!! TATACCGTGTTGATTTTTTT+GGG + chr6_1:88773118-88773137 None:intergenic 25.0%
!!! ATATACCGTGTTGATTTTTT+TGG + chr6_1:88773119-88773138 None:intergenic 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG + chr6_1:88773191-88773210 None:intergenic 25.0%
!! TTTTTGCATTGGAAATTGTA+CGG + chr6_1:88773247-88773266 None:intergenic 25.0%
!! TAAAGTAGCAATTTTTGCAT+TGG + chr6_1:88773258-88773277 None:intergenic 25.0%
! CGTGTTACATAATTCAATAA+TGG + chr6_1:88773321-88773340 None:intergenic 25.0%
! GCAAATAGTGTTTACATATA+GGG + chr6_1:88773420-88773439 None:intergenic 25.0%
! TGCAAATAGTGTTTACATAT+AGG + chr6_1:88773421-88773440 None:intergenic 25.0%
! AAAAGTTTAAGGATTATCCT+TGG - chr6_1:88773505-88773524 Msa0897200:intron 25.0%
! ACCATTAATTAGCTATGTAA+TGG - chr6_1:88773638-88773657 Msa0897200:intron 25.0%
! TGTCAAGATGAAAGAAAATT+TGG + chr6_1:88773773-88773792 None:intergenic 25.0%
!! AATTTTTCTCTTTCTTTACG+CGG - chr6_1:88773925-88773944 Msa0897200:intron 25.0%
! TTTATTAAACTGAACTCAAG+TGG - chr6_1:88774036-88774055 Msa0897200:intron 25.0%
!! TTATTGAGTTATTGATTGTG+GGG + chr6_1:88774582-88774601 None:intergenic 25.0%
!! GATTATTGAGTTATTGATTG+TGG + chr6_1:88774584-88774603 None:intergenic 25.0%
!! TGTCGTTTAATTTCAATGAT+TGG - chr6_1:88774723-88774742 Msa0897200:intron 25.0%
! TAAGTAATGATCATGATTGA+AGG + chr6_1:88774974-88774993 None:intergenic 25.0%
!! AAGAGAAGGTTTATGTTTTA+TGG - chr6_1:88775268-88775287 Msa0897200:CDS 25.0%
!! TTTTATGGCTTATGATATCA+TGG + chr6_1:88775355-88775374 None:intergenic 25.0%
! TATCATAAGCCATAAAAGTT+TGG - chr6_1:88775358-88775377 Msa0897200:CDS 25.0%
! AGTTTGGAAGATAAAATGAA+TGG - chr6_1:88775374-88775393 Msa0897200:CDS 25.0%
! GTTTGGAAGATAAAATGAAT+GGG - chr6_1:88775375-88775394 Msa0897200:CDS 25.0%
! AAAATGAATGGGACAAAATT+AGG - chr6_1:88775386-88775405 Msa0897200:CDS 25.0%
! ATATGAATTTCCTTTCCATT+AGG + chr6_1:88775416-88775435 None:intergenic 25.0%
!!! TCTTCTTTCTTTGGAATTAA+AGG - chr6_1:88771560-88771579 Msa0897200:three_prime_UTR 25.0%
!!! CTTCTTTCTTTGGAATTAAA+GGG - chr6_1:88771561-88771580 Msa0897200:three_prime_UTR 25.0%
!!! ATTAAAGGGTATTACAAAAG+AGG - chr6_1:88771575-88771594 Msa0897200:three_prime_UTR 25.0%
!! CTTTTGTAAACCTTGAAATA+AGG + chr6_1:88771748-88771767 None:intergenic 25.0%
! AAAAAAAAAGTTACCTCTCT+TGG + chr6_1:88771877-88771896 None:intergenic 25.0%
!!! GTTTTGTTGTTTTGTTTCAA+TGG - chr6_1:88772011-88772030 Msa0897200:CDS 25.0%
! TAGTGAATATTCAAGAGATA+TGG + chr6_1:88772134-88772153 None:intergenic 25.0%
! CATAAAAGGTTTATGAAACA+CGG + chr6_1:88772345-88772364 None:intergenic 25.0%
! TTTCAACTTTACTACTCATA+CGG - chr6_1:88772734-88772753 Msa0897200:intron 25.0%
! ATTTCAAGATATCGTTATCA+AGG + chr6_1:88772762-88772781 None:intergenic 25.0%
! GCAAAAACTAATTAAAAGTC+AGG - chr6_1:88772804-88772823 Msa0897200:intron 25.0%
! TAACCAAACTTATACTCAAT+TGG + chr6_1:88772834-88772853 None:intergenic 25.0%
!!! GTATAAGTTTGGTTATTTTG+TGG - chr6_1:88772839-88772858 Msa0897200:intron 25.0%
! ATAACTAGAATAATTTCAGG+TGG - chr6_1:88772885-88772904 Msa0897200:intron 25.0%
!! TAACTAGAATAATTTCAGGT+GGG - chr6_1:88772886-88772905 Msa0897200:intron 25.0%
!!! TATACCGTGTTGATTTTTTT+GGG + chr6_1:88773118-88773137 None:intergenic 25.0%
!!! ATATACCGTGTTGATTTTTT+TGG + chr6_1:88773119-88773138 None:intergenic 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG + chr6_1:88773191-88773210 None:intergenic 25.0%
!! TTTTTGCATTGGAAATTGTA+CGG + chr6_1:88773247-88773266 None:intergenic 25.0%
!! TAAAGTAGCAATTTTTGCAT+TGG + chr6_1:88773258-88773277 None:intergenic 25.0%
! CGTGTTACATAATTCAATAA+TGG + chr6_1:88773321-88773340 None:intergenic 25.0%
! GCAAATAGTGTTTACATATA+GGG + chr6_1:88773420-88773439 None:intergenic 25.0%
! TGCAAATAGTGTTTACATAT+AGG + chr6_1:88773421-88773440 None:intergenic 25.0%
! AAAAGTTTAAGGATTATCCT+TGG - chr6_1:88773505-88773524 Msa0897200:intron 25.0%
! ACCATTAATTAGCTATGTAA+TGG - chr6_1:88773638-88773657 Msa0897200:intron 25.0%
! TGTCAAGATGAAAGAAAATT+TGG + chr6_1:88773773-88773792 None:intergenic 25.0%
!! AATTTTTCTCTTTCTTTACG+CGG - chr6_1:88773925-88773944 Msa0897200:intron 25.0%
! TTTATTAAACTGAACTCAAG+TGG - chr6_1:88774036-88774055 Msa0897200:intron 25.0%
!! TTATTGAGTTATTGATTGTG+GGG + chr6_1:88774582-88774601 None:intergenic 25.0%
!! GATTATTGAGTTATTGATTG+TGG + chr6_1:88774584-88774603 None:intergenic 25.0%
!! TGTCGTTTAATTTCAATGAT+TGG - chr6_1:88774723-88774742 Msa0897200:intron 25.0%
! TAAGTAATGATCATGATTGA+AGG + chr6_1:88774974-88774993 None:intergenic 25.0%
!! AAGAGAAGGTTTATGTTTTA+TGG - chr6_1:88775268-88775287 Msa0897200:CDS 25.0%
!! TTTTATGGCTTATGATATCA+TGG + chr6_1:88775355-88775374 None:intergenic 25.0%
! TATCATAAGCCATAAAAGTT+TGG - chr6_1:88775358-88775377 Msa0897200:CDS 25.0%
! AGTTTGGAAGATAAAATGAA+TGG - chr6_1:88775374-88775393 Msa0897200:CDS 25.0%
! GTTTGGAAGATAAAATGAAT+GGG - chr6_1:88775375-88775394 Msa0897200:CDS 25.0%
! AAAATGAATGGGACAAAATT+AGG - chr6_1:88775386-88775405 Msa0897200:CDS 25.0%
! ATATGAATTTCCTTTCCATT+AGG + chr6_1:88775416-88775435 None:intergenic 25.0%
CCAAAGAAAGAAGACTAATA+GGG + chr6_1:88771554-88771573 None:intergenic 30.0%
TCCAAAGAAAGAAGACTAAT+AGG + chr6_1:88771555-88771574 None:intergenic 30.0%
! GGAAATCAAACCTTATTTCA+AGG - chr6_1:88771735-88771754 Msa0897200:CDS 30.0%
ATTTGGTTACAAGAACATCA+AGG - chr6_1:88771808-88771827 Msa0897200:CDS 30.0%
GATGTTGAAGACAAGAAAAA+GGG + chr6_1:88771982-88772001 None:intergenic 30.0%
AGATGTTGAAGACAAGAAAA+AGG + chr6_1:88771983-88772002 None:intergenic 30.0%
AAACTTGGGTTACGTAAATT+TGG + chr6_1:88772045-88772064 None:intergenic 30.0%
TCCAATAAGGATTCAAACTT+GGG + chr6_1:88772059-88772078 None:intergenic 30.0%
TTCCAATAAGGATTCAAACT+TGG + chr6_1:88772060-88772079 None:intergenic 30.0%
GGAATGAAATTGTTCCAATA+AGG + chr6_1:88772072-88772091 None:intergenic 30.0%
! GTCTTTTTGCTTTCTTTTCT+TGG - chr6_1:88772400-88772419 Msa0897200:intron 30.0%
!!! TTTCTTTTCTTGGCTTTAGT+TGG - chr6_1:88772410-88772429 Msa0897200:intron 30.0%
! GCATATTCAGTTTTCAAAGT+TGG - chr6_1:88772458-88772477 Msa0897200:intron 30.0%
TTTCAAAGTTGGCGTTTAAT+TGG - chr6_1:88772469-88772488 Msa0897200:intron 30.0%
AATGCAGCAACAAACAAAAA+GGG + chr6_1:88772601-88772620 None:intergenic 30.0%
AAATGCAGCAACAAACAAAA+AGG + chr6_1:88772602-88772621 None:intergenic 30.0%
GATACAAAAGCAAACAACAA+AGG + chr6_1:88772643-88772662 None:intergenic 30.0%
TTCAACTTTACTACTCATAC+GGG - chr6_1:88772735-88772754 Msa0897200:intron 30.0%
TTGCCAATTGAGTATAAGTT+TGG - chr6_1:88772828-88772847 Msa0897200:intron 30.0%
ATCAAATGCTCACTATTTGA+AGG - chr6_1:88773026-88773045 Msa0897200:intron 30.0%
!!! ATACCGTGTTGATTTTTTTG+GGG + chr6_1:88773117-88773136 None:intergenic 30.0%
TCAACACGGTATATTATTGA+AGG - chr6_1:88773125-88773144 Msa0897200:intron 30.0%
CAACACGGTATATTATTGAA+GGG - chr6_1:88773126-88773145 Msa0897200:intron 30.0%
ATGCTTAAACAATGCTCTTA+GGG - chr6_1:88773279-88773298 Msa0897200:intron 30.0%
ATGGTGTTTAGATATAGAGA+CGG - chr6_1:88773450-88773469 Msa0897200:intron 30.0%
TGATTGAAAGTCAAAATCCA+AGG + chr6_1:88773525-88773544 None:intergenic 30.0%
TGACTTTCAATCATTTCTTG+AGG - chr6_1:88773532-88773551 Msa0897200:intron 30.0%
GACTTTCAATCATTTCTTGA+GGG - chr6_1:88773533-88773552 Msa0897200:intron 30.0%
AGCAAAATATGGTTAGAAGT+TGG - chr6_1:88773581-88773600 Msa0897200:intron 30.0%
ACATAGCTAATTAATGGTGT+TGG + chr6_1:88773636-88773655 None:intergenic 30.0%
GCCATTACATAGCTAATTAA+TGG + chr6_1:88773642-88773661 None:intergenic 30.0%
TTAATTAGCTATGTAATGGC+AGG - chr6_1:88773642-88773661 Msa0897200:intron 30.0%
ACACAAACTATCGAATAGAA+TGG - chr6_1:88773996-88774015 Msa0897200:intron 30.0%
CACAAACTATCGAATAGAAT+GGG - chr6_1:88773997-88774016 Msa0897200:intron 30.0%
!!! TGGTGGAATACTTTTTTATC+AGG - chr6_1:88774106-88774125 Msa0897200:intron 30.0%
GTAATATAGAGTTCGATCAA+AGG + chr6_1:88774141-88774160 None:intergenic 30.0%
!! ATCTAGACATTTTAAGTGGT+GGG + chr6_1:88774322-88774341 None:intergenic 30.0%
! ACAGATCTAGACATTTTAAG+TGG + chr6_1:88774326-88774345 None:intergenic 30.0%
AAGTGTAGTAAATTGAAACC+AGG - chr6_1:88774350-88774369 Msa0897200:intron 30.0%
!! GCAAATCTTTGATTTGAGTA+AGG - chr6_1:88774389-88774408 Msa0897200:intron 30.0%
!! ATCTTTGATTTGAGTAAGGT+TGG - chr6_1:88774393-88774412 Msa0897200:intron 30.0%
!! TCTTTGATTTGAGTAAGGTT+GGG - chr6_1:88774394-88774413 Msa0897200:intron 30.0%
CTCTAAGTGAATATCATGTT+TGG + chr6_1:88774628-88774647 None:intergenic 30.0%
GACAACTTTGTCATTCATTA+CGG - chr6_1:88774781-88774800 Msa0897200:intron 30.0%
!!! AAAAGCATTTTGATGGGATA+TGG + chr6_1:88774913-88774932 None:intergenic 30.0%
! TGTGTACAATTTTATGGTGT+AGG - chr6_1:88775030-88775049 Msa0897200:intron 30.0%
TTACATGAGCTTAGAGAATA+TGG - chr6_1:88775152-88775171 Msa0897200:intron 30.0%
AGAATATGGAAATGAAGACA+TGG - chr6_1:88775166-88775185 Msa0897200:intron 30.0%
! AATCTGATTTGAGTCAATCA+AGG - chr6_1:88775210-88775229 Msa0897200:intron 30.0%
! ATCTGATTTGAGTCAATCAA+GGG - chr6_1:88775211-88775230 Msa0897200:intron 30.0%
TTGAGAAAGAAGAAGGAAAA+GGG - chr6_1:88775237-88775256 Msa0897200:CDS 30.0%
ACAAAATTAGGTCTTCCTAA+TGG - chr6_1:88775398-88775417 Msa0897200:CDS 30.0%
CCAAAGAAAGAAGACTAATA+GGG + chr6_1:88771554-88771573 None:intergenic 30.0%
TCCAAAGAAAGAAGACTAAT+AGG + chr6_1:88771555-88771574 None:intergenic 30.0%
! GGAAATCAAACCTTATTTCA+AGG - chr6_1:88771735-88771754 Msa0897200:CDS 30.0%
ATTTGGTTACAAGAACATCA+AGG - chr6_1:88771808-88771827 Msa0897200:CDS 30.0%
GATGTTGAAGACAAGAAAAA+GGG + chr6_1:88771982-88772001 None:intergenic 30.0%
AGATGTTGAAGACAAGAAAA+AGG + chr6_1:88771983-88772002 None:intergenic 30.0%
AAACTTGGGTTACGTAAATT+TGG + chr6_1:88772045-88772064 None:intergenic 30.0%
TCCAATAAGGATTCAAACTT+GGG + chr6_1:88772059-88772078 None:intergenic 30.0%
TTCCAATAAGGATTCAAACT+TGG + chr6_1:88772060-88772079 None:intergenic 30.0%
GGAATGAAATTGTTCCAATA+AGG + chr6_1:88772072-88772091 None:intergenic 30.0%
! GTCTTTTTGCTTTCTTTTCT+TGG - chr6_1:88772400-88772419 Msa0897200:intron 30.0%
!!! TTTCTTTTCTTGGCTTTAGT+TGG - chr6_1:88772410-88772429 Msa0897200:intron 30.0%
! GCATATTCAGTTTTCAAAGT+TGG - chr6_1:88772458-88772477 Msa0897200:intron 30.0%
TTTCAAAGTTGGCGTTTAAT+TGG - chr6_1:88772469-88772488 Msa0897200:intron 30.0%
AATGCAGCAACAAACAAAAA+GGG + chr6_1:88772601-88772620 None:intergenic 30.0%
AAATGCAGCAACAAACAAAA+AGG + chr6_1:88772602-88772621 None:intergenic 30.0%
GATACAAAAGCAAACAACAA+AGG + chr6_1:88772643-88772662 None:intergenic 30.0%
TTCAACTTTACTACTCATAC+GGG - chr6_1:88772735-88772754 Msa0897200:intron 30.0%
TTGCCAATTGAGTATAAGTT+TGG - chr6_1:88772828-88772847 Msa0897200:intron 30.0%
ATCAAATGCTCACTATTTGA+AGG - chr6_1:88773026-88773045 Msa0897200:intron 30.0%
!!! ATACCGTGTTGATTTTTTTG+GGG + chr6_1:88773117-88773136 None:intergenic 30.0%
TCAACACGGTATATTATTGA+AGG - chr6_1:88773125-88773144 Msa0897200:intron 30.0%
CAACACGGTATATTATTGAA+GGG - chr6_1:88773126-88773145 Msa0897200:intron 30.0%
ATGCTTAAACAATGCTCTTA+GGG - chr6_1:88773279-88773298 Msa0897200:intron 30.0%
ATGGTGTTTAGATATAGAGA+CGG - chr6_1:88773450-88773469 Msa0897200:intron 30.0%
TGATTGAAAGTCAAAATCCA+AGG + chr6_1:88773525-88773544 None:intergenic 30.0%
TGACTTTCAATCATTTCTTG+AGG - chr6_1:88773532-88773551 Msa0897200:intron 30.0%
GACTTTCAATCATTTCTTGA+GGG - chr6_1:88773533-88773552 Msa0897200:intron 30.0%
AGCAAAATATGGTTAGAAGT+TGG - chr6_1:88773581-88773600 Msa0897200:intron 30.0%
ACATAGCTAATTAATGGTGT+TGG + chr6_1:88773636-88773655 None:intergenic 30.0%
GCCATTACATAGCTAATTAA+TGG + chr6_1:88773642-88773661 None:intergenic 30.0%
TTAATTAGCTATGTAATGGC+AGG - chr6_1:88773642-88773661 Msa0897200:intron 30.0%
ACACAAACTATCGAATAGAA+TGG - chr6_1:88773996-88774015 Msa0897200:intron 30.0%
CACAAACTATCGAATAGAAT+GGG - chr6_1:88773997-88774016 Msa0897200:intron 30.0%
!!! TGGTGGAATACTTTTTTATC+AGG - chr6_1:88774106-88774125 Msa0897200:intron 30.0%
GTAATATAGAGTTCGATCAA+AGG + chr6_1:88774141-88774160 None:intergenic 30.0%
!! ATCTAGACATTTTAAGTGGT+GGG + chr6_1:88774322-88774341 None:intergenic 30.0%
! ACAGATCTAGACATTTTAAG+TGG + chr6_1:88774326-88774345 None:intergenic 30.0%
AAGTGTAGTAAATTGAAACC+AGG - chr6_1:88774350-88774369 Msa0897200:intron 30.0%
!! GCAAATCTTTGATTTGAGTA+AGG - chr6_1:88774389-88774408 Msa0897200:intron 30.0%
!! ATCTTTGATTTGAGTAAGGT+TGG - chr6_1:88774393-88774412 Msa0897200:intron 30.0%
!! TCTTTGATTTGAGTAAGGTT+GGG - chr6_1:88774394-88774413 Msa0897200:intron 30.0%
CTCTAAGTGAATATCATGTT+TGG + chr6_1:88774628-88774647 None:intergenic 30.0%
GACAACTTTGTCATTCATTA+CGG - chr6_1:88774781-88774800 Msa0897200:intron 30.0%
!!! AAAAGCATTTTGATGGGATA+TGG + chr6_1:88774913-88774932 None:intergenic 30.0%
! TGTGTACAATTTTATGGTGT+AGG - chr6_1:88775030-88775049 Msa0897200:intron 30.0%
TTACATGAGCTTAGAGAATA+TGG - chr6_1:88775152-88775171 Msa0897200:intron 30.0%
AGAATATGGAAATGAAGACA+TGG - chr6_1:88775166-88775185 Msa0897200:intron 30.0%
! AATCTGATTTGAGTCAATCA+AGG - chr6_1:88775210-88775229 Msa0897200:intron 30.0%
! ATCTGATTTGAGTCAATCAA+GGG - chr6_1:88775211-88775230 Msa0897200:intron 30.0%
TTGAGAAAGAAGAAGGAAAA+GGG - chr6_1:88775237-88775256 Msa0897200:CDS 30.0%
ACAAAATTAGGTCTTCCTAA+TGG - chr6_1:88775398-88775417 Msa0897200:CDS 30.0%
AAGAAAGAAGACTAATAGGG+AGG + chr6_1:88771551-88771570 None:intergenic 35.0%
!! CCCTATTAGTCTTCTTTCTT+TGG - chr6_1:88771551-88771570 Msa0897200:three_prime_UTR 35.0%
!!! CAATTAGAACGGTTTTGAAG+AGG + chr6_1:88771700-88771719 None:intergenic 35.0%
CTCTTCAAAACCGTTCTAAT+TGG - chr6_1:88771698-88771717 Msa0897200:CDS 35.0%
TCCAGAATCTCCAATTAGAA+CGG + chr6_1:88771711-88771730 None:intergenic 35.0%
!! TAATTGGAGATTCTGGAGTT+GGG - chr6_1:88771714-88771733 Msa0897200:CDS 35.0%
AGCTCATCAAAGCACAAATA+TGG - chr6_1:88771840-88771859 Msa0897200:CDS 35.0%
GCTCATCAAAGCACAAATAT+GGG - chr6_1:88771841-88771860 Msa0897200:CDS 35.0%
TGTCTTCAACATCTTAGCAA+AGG - chr6_1:88771989-88772008 Msa0897200:CDS 35.0%
ACCCAAGTTTGAATCCTTAT+TGG - chr6_1:88772055-88772074 Msa0897200:intron 35.0%
ATCGAAACACACATAATCCA+AGG - chr6_1:88772314-88772333 Msa0897200:intron 35.0%
TTCACATGCATCTGCATAAA+AGG + chr6_1:88772359-88772378 None:intergenic 35.0%
TGTTTGTGGGATGTAGATAA+GGG + chr6_1:88772569-88772588 None:intergenic 35.0%
ATGTTTGTGGGATGTAGATA+AGG + chr6_1:88772570-88772589 None:intergenic 35.0%
TATCTACATCCCACAAACAT+TGG - chr6_1:88772570-88772589 Msa0897200:intron 35.0%
! ACTAAAGGAAAGCACATACA+AGG - chr6_1:88772677-88772696 Msa0897200:intron 35.0%
TGATAATCCCATTACCATCA+AGG + chr6_1:88772913-88772932 None:intergenic 35.0%
TCACCCCAAAAAAATCAACA+CGG - chr6_1:88773111-88773130 Msa0897200:intron 35.0%
TTCCTTAAACAATGCCCTTA+AGG + chr6_1:88773167-88773186 None:intergenic 35.0%
GATGCTTAAACAATGCTCTT+AGG - chr6_1:88773278-88773297 Msa0897200:intron 35.0%
GGATAGAGAGAGTAATTTAG+AGG + chr6_1:88773399-88773418 None:intergenic 35.0%
TGTTTAGATATAGAGACGGA+GGG - chr6_1:88773454-88773473 Msa0897200:intron 35.0%
TGGATTGTTGCAATGTATCA+TGG - chr6_1:88773601-88773620 Msa0897200:intron 35.0%
GATGAAAGAAAATTTGGACG+AGG + chr6_1:88773767-88773786 None:intergenic 35.0%
TGCTCAACTAAAAGATAGTG+AGG + chr6_1:88773903-88773922 None:intergenic 35.0%
AAACTATCGAATAGAATGGG+AGG - chr6_1:88774000-88774019 Msa0897200:intron 35.0%
AACTATCGAATAGAATGGGA+GGG - chr6_1:88774001-88774020 Msa0897200:intron 35.0%
AGTATTCCACCAAGAATTAG+CGG + chr6_1:88774098-88774117 None:intergenic 35.0%
!! TCTAGACATTTTAAGTGGTG+GGG + chr6_1:88774321-88774340 None:intergenic 35.0%
!! GATCTAGACATTTTAAGTGG+TGG + chr6_1:88774323-88774342 None:intergenic 35.0%
GCATTGAATTGAAAACAACC+TGG + chr6_1:88774371-88774390 None:intergenic 35.0%
AAACCAAGTCGACTATCAAT+AGG - chr6_1:88774514-88774533 Msa0897200:intron 35.0%
! AAAAGCATGTGACACAAACA+TGG - chr6_1:88774543-88774562 Msa0897200:intron 35.0%
! ATGTGACACAAACATGGTTT+TGG - chr6_1:88774549-88774568 Msa0897200:intron 35.0%
ATCACAAGCTCATACTATAG+AGG - chr6_1:88775062-88775081 Msa0897200:intron 35.0%
!! TCATACTATAGAGGAGCATT+GGG - chr6_1:88775071-88775090 Msa0897200:intron 35.0%
GTTGAGAAAGAAGAAGGAAA+AGG - chr6_1:88775236-88775255 Msa0897200:CDS 35.0%
ATTAGGTCTTCCTAATGGAA+AGG - chr6_1:88775403-88775422 Msa0897200:CDS 35.0%
AAGAAAGAAGACTAATAGGG+AGG + chr6_1:88771551-88771570 None:intergenic 35.0%
!! CCCTATTAGTCTTCTTTCTT+TGG - chr6_1:88771551-88771570 Msa0897200:three_prime_UTR 35.0%
!!! CAATTAGAACGGTTTTGAAG+AGG + chr6_1:88771700-88771719 None:intergenic 35.0%
CTCTTCAAAACCGTTCTAAT+TGG - chr6_1:88771698-88771717 Msa0897200:CDS 35.0%
TCCAGAATCTCCAATTAGAA+CGG + chr6_1:88771711-88771730 None:intergenic 35.0%
!! TAATTGGAGATTCTGGAGTT+GGG - chr6_1:88771714-88771733 Msa0897200:CDS 35.0%
AGCTCATCAAAGCACAAATA+TGG - chr6_1:88771840-88771859 Msa0897200:CDS 35.0%
GCTCATCAAAGCACAAATAT+GGG - chr6_1:88771841-88771860 Msa0897200:CDS 35.0%
TGTCTTCAACATCTTAGCAA+AGG - chr6_1:88771989-88772008 Msa0897200:CDS 35.0%
ACCCAAGTTTGAATCCTTAT+TGG - chr6_1:88772055-88772074 Msa0897200:intron 35.0%
ATCGAAACACACATAATCCA+AGG - chr6_1:88772314-88772333 Msa0897200:intron 35.0%
TTCACATGCATCTGCATAAA+AGG + chr6_1:88772359-88772378 None:intergenic 35.0%
TGTTTGTGGGATGTAGATAA+GGG + chr6_1:88772569-88772588 None:intergenic 35.0%
ATGTTTGTGGGATGTAGATA+AGG + chr6_1:88772570-88772589 None:intergenic 35.0%
TATCTACATCCCACAAACAT+TGG - chr6_1:88772570-88772589 Msa0897200:intron 35.0%
! ACTAAAGGAAAGCACATACA+AGG - chr6_1:88772677-88772696 Msa0897200:intron 35.0%
TGATAATCCCATTACCATCA+AGG + chr6_1:88772913-88772932 None:intergenic 35.0%
TCACCCCAAAAAAATCAACA+CGG - chr6_1:88773111-88773130 Msa0897200:intron 35.0%
TTCCTTAAACAATGCCCTTA+AGG + chr6_1:88773167-88773186 None:intergenic 35.0%
GATGCTTAAACAATGCTCTT+AGG - chr6_1:88773278-88773297 Msa0897200:intron 35.0%
GGATAGAGAGAGTAATTTAG+AGG + chr6_1:88773399-88773418 None:intergenic 35.0%
TGTTTAGATATAGAGACGGA+GGG - chr6_1:88773454-88773473 Msa0897200:intron 35.0%
TGGATTGTTGCAATGTATCA+TGG - chr6_1:88773601-88773620 Msa0897200:intron 35.0%
GATGAAAGAAAATTTGGACG+AGG + chr6_1:88773767-88773786 None:intergenic 35.0%
TGCTCAACTAAAAGATAGTG+AGG + chr6_1:88773903-88773922 None:intergenic 35.0%
AAACTATCGAATAGAATGGG+AGG - chr6_1:88774000-88774019 Msa0897200:intron 35.0%
AACTATCGAATAGAATGGGA+GGG - chr6_1:88774001-88774020 Msa0897200:intron 35.0%
AGTATTCCACCAAGAATTAG+CGG + chr6_1:88774098-88774117 None:intergenic 35.0%
!! TCTAGACATTTTAAGTGGTG+GGG + chr6_1:88774321-88774340 None:intergenic 35.0%
!! GATCTAGACATTTTAAGTGG+TGG + chr6_1:88774323-88774342 None:intergenic 35.0%
GCATTGAATTGAAAACAACC+TGG + chr6_1:88774371-88774390 None:intergenic 35.0%
AAACCAAGTCGACTATCAAT+AGG - chr6_1:88774514-88774533 Msa0897200:intron 35.0%
! AAAAGCATGTGACACAAACA+TGG - chr6_1:88774543-88774562 Msa0897200:intron 35.0%
! ATGTGACACAAACATGGTTT+TGG - chr6_1:88774549-88774568 Msa0897200:intron 35.0%
ATCACAAGCTCATACTATAG+AGG - chr6_1:88775062-88775081 Msa0897200:intron 35.0%
!! TCATACTATAGAGGAGCATT+GGG - chr6_1:88775071-88775090 Msa0897200:intron 35.0%
GTTGAGAAAGAAGAAGGAAA+AGG - chr6_1:88775236-88775255 Msa0897200:CDS 35.0%
ATTAGGTCTTCCTAATGGAA+AGG - chr6_1:88775403-88775422 Msa0897200:CDS 35.0%
ACCGTTCTAATTGGAGATTC+TGG - chr6_1:88771707-88771726 Msa0897200:CDS 40.0%
!! CTAATTGGAGATTCTGGAGT+TGG - chr6_1:88771713-88771732 Msa0897200:CDS 40.0%
GTAACCAAATTCCACACCTA+TGG + chr6_1:88771798-88771817 None:intergenic 40.0%
AAAAAGTTACCTCTCTTGGC+CGG + chr6_1:88771873-88771892 None:intergenic 40.0%
TATGAAACACGGATACTCCT+TGG + chr6_1:88772334-88772353 None:intergenic 40.0%
AGCAACAAACAAAAAGGGTG+GGG + chr6_1:88772596-88772615 None:intergenic 40.0%
CAGCAACAAACAAAAAGGGT+GGG + chr6_1:88772597-88772616 None:intergenic 40.0%
TCTTGCTAACAAGTGCCTTA+AGG - chr6_1:88773149-88773168 Msa0897200:intron 40.0%
CTTGCTAACAAGTGCCTTAA+GGG - chr6_1:88773150-88773169 Msa0897200:intron 40.0%
!! TGCCTTAAGGGCATTGTTTA+AGG - chr6_1:88773162-88773181 Msa0897200:intron 40.0%
GTGTTTAGATATAGAGACGG+AGG - chr6_1:88773453-88773472 Msa0897200:intron 40.0%
TCAATCATTTCTTGAGGGAG+AGG - chr6_1:88773538-88773557 Msa0897200:intron 40.0%
AGAGGAATAATTGTGCGGAT+TGG - chr6_1:88773556-88773575 Msa0897200:intron 40.0%
!! GCGGATTGGTTAGCAAAATA+TGG - chr6_1:88773570-88773589 Msa0897200:intron 40.0%
AAGTGGTTAACGATCCTATG+AGG - chr6_1:88774053-88774072 Msa0897200:intron 40.0%
GTATTCCACCAAGAATTAGC+GGG + chr6_1:88774097-88774116 None:intergenic 40.0%
! TTGATTTGAGTAAGGTTGGG+TGG - chr6_1:88774397-88774416 Msa0897200:intron 40.0%
TGATTTGAGTAAGGTTGGGT+GGG - chr6_1:88774398-88774417 Msa0897200:intron 40.0%
! TGAGTTATTGATTGTGGGGT+TGG + chr6_1:88774578-88774597 None:intergenic 40.0%
! CTCATACTATAGAGGAGCAT+TGG - chr6_1:88775070-88775089 Msa0897200:intron 40.0%
! TGCTAGTCTATGACATAAGC+AGG - chr6_1:88775099-88775118 Msa0897200:intron 40.0%
TGATTTGAGTCAATCAAGGG+AGG - chr6_1:88775214-88775233 Msa0897200:intron 40.0%
AAAGGGTTTGCAGAAAGAGA+AGG - chr6_1:88775254-88775273 Msa0897200:CDS 40.0%
ACCGTTCTAATTGGAGATTC+TGG - chr6_1:88771707-88771726 Msa0897200:CDS 40.0%
!! CTAATTGGAGATTCTGGAGT+TGG - chr6_1:88771713-88771732 Msa0897200:CDS 40.0%
GTAACCAAATTCCACACCTA+TGG + chr6_1:88771798-88771817 None:intergenic 40.0%
AAAAAGTTACCTCTCTTGGC+CGG + chr6_1:88771873-88771892 None:intergenic 40.0%
TATGAAACACGGATACTCCT+TGG + chr6_1:88772334-88772353 None:intergenic 40.0%
AGCAACAAACAAAAAGGGTG+GGG + chr6_1:88772596-88772615 None:intergenic 40.0%
CAGCAACAAACAAAAAGGGT+GGG + chr6_1:88772597-88772616 None:intergenic 40.0%
TCTTGCTAACAAGTGCCTTA+AGG - chr6_1:88773149-88773168 Msa0897200:intron 40.0%
CTTGCTAACAAGTGCCTTAA+GGG - chr6_1:88773150-88773169 Msa0897200:intron 40.0%
!! TGCCTTAAGGGCATTGTTTA+AGG - chr6_1:88773162-88773181 Msa0897200:intron 40.0%
GTGTTTAGATATAGAGACGG+AGG - chr6_1:88773453-88773472 Msa0897200:intron 40.0%
TCAATCATTTCTTGAGGGAG+AGG - chr6_1:88773538-88773557 Msa0897200:intron 40.0%
AGAGGAATAATTGTGCGGAT+TGG - chr6_1:88773556-88773575 Msa0897200:intron 40.0%
!! GCGGATTGGTTAGCAAAATA+TGG - chr6_1:88773570-88773589 Msa0897200:intron 40.0%
AAGTGGTTAACGATCCTATG+AGG - chr6_1:88774053-88774072 Msa0897200:intron 40.0%
GTATTCCACCAAGAATTAGC+GGG + chr6_1:88774097-88774116 None:intergenic 40.0%
! TTGATTTGAGTAAGGTTGGG+TGG - chr6_1:88774397-88774416 Msa0897200:intron 40.0%
TGATTTGAGTAAGGTTGGGT+GGG - chr6_1:88774398-88774417 Msa0897200:intron 40.0%
! TGAGTTATTGATTGTGGGGT+TGG + chr6_1:88774578-88774597 None:intergenic 40.0%
! CTCATACTATAGAGGAGCAT+TGG - chr6_1:88775070-88775089 Msa0897200:intron 40.0%
! TGCTAGTCTATGACATAAGC+AGG - chr6_1:88775099-88775118 Msa0897200:intron 40.0%
TGATTTGAGTCAATCAAGGG+AGG - chr6_1:88775214-88775233 Msa0897200:intron 40.0%
AAAGGGTTTGCAGAAAGAGA+AGG - chr6_1:88775254-88775273 Msa0897200:CDS 40.0%
CTTGATTCCAAGCCAACCAT+AGG - chr6_1:88771779-88771798 Msa0897200:CDS 45.0%
CCAAATTCCACACCTATGGT+TGG + chr6_1:88771794-88771813 None:intergenic 45.0%
CCAACCATAGGTGTGGAATT+TGG - chr6_1:88771791-88771810 Msa0897200:CDS 45.0%
CACGAACACTAGACACGAAA+CGG - chr6_1:88772185-88772204 Msa0897200:intron 45.0%
GCAGCAACAAACAAAAAGGG+TGG + chr6_1:88772598-88772617 None:intergenic 45.0%
! AATTTCAGGTGGGACCTTGA+TGG - chr6_1:88772896-88772915 Msa0897200:intron 45.0%
GAGGGAGAGGAATAATTGTG+CGG - chr6_1:88773551-88773570 Msa0897200:intron 45.0%
CTATGTAATGGCAGGTGTGT+TGG - chr6_1:88773650-88773669 Msa0897200:intron 45.0%
GGCGAACAATTTGTCCTCAT+AGG + chr6_1:88774070-88774089 None:intergenic 45.0%
!!! CACCAAGAATTAGCGGGTTT+TGG + chr6_1:88774091-88774110 None:intergenic 45.0%
CAAAACCCGCTAATTCTTGG+TGG - chr6_1:88774089-88774108 Msa0897200:intron 45.0%
GATTTGAGTAAGGTTGGGTG+GGG - chr6_1:88774399-88774418 Msa0897200:intron 45.0%
! GTGGGTCTAGGACAAGAATT+GGG - chr6_1:88774421-88774440 Msa0897200:intron 45.0%
! CGACCTATTGATAGTCGACT+TGG + chr6_1:88774520-88774539 None:intergenic 45.0%
AGTCGACTATCAATAGGTCG+AGG - chr6_1:88774520-88774539 Msa0897200:intron 45.0%
TGAAACTAACCACTCGAGTC+AGG + chr6_1:88774812-88774831 None:intergenic 45.0%
AGGGAGGTTGAGAAAGAAGA+AGG - chr6_1:88775230-88775249 Msa0897200:CDS 45.0%
CTTGATTCCAAGCCAACCAT+AGG - chr6_1:88771779-88771798 Msa0897200:CDS 45.0%
CCAAATTCCACACCTATGGT+TGG + chr6_1:88771794-88771813 None:intergenic 45.0%
CCAACCATAGGTGTGGAATT+TGG - chr6_1:88771791-88771810 Msa0897200:CDS 45.0%
CACGAACACTAGACACGAAA+CGG - chr6_1:88772185-88772204 Msa0897200:intron 45.0%
GCAGCAACAAACAAAAAGGG+TGG + chr6_1:88772598-88772617 None:intergenic 45.0%
! AATTTCAGGTGGGACCTTGA+TGG - chr6_1:88772896-88772915 Msa0897200:intron 45.0%
GAGGGAGAGGAATAATTGTG+CGG - chr6_1:88773551-88773570 Msa0897200:intron 45.0%
CTATGTAATGGCAGGTGTGT+TGG - chr6_1:88773650-88773669 Msa0897200:intron 45.0%
GGCGAACAATTTGTCCTCAT+AGG + chr6_1:88774070-88774089 None:intergenic 45.0%
!!! CACCAAGAATTAGCGGGTTT+TGG + chr6_1:88774091-88774110 None:intergenic 45.0%
CAAAACCCGCTAATTCTTGG+TGG - chr6_1:88774089-88774108 Msa0897200:intron 45.0%
GATTTGAGTAAGGTTGGGTG+GGG - chr6_1:88774399-88774418 Msa0897200:intron 45.0%
! GTGGGTCTAGGACAAGAATT+GGG - chr6_1:88774421-88774440 Msa0897200:intron 45.0%
! CGACCTATTGATAGTCGACT+TGG + chr6_1:88774520-88774539 None:intergenic 45.0%
AGTCGACTATCAATAGGTCG+AGG - chr6_1:88774520-88774539 Msa0897200:intron 45.0%
TGAAACTAACCACTCGAGTC+AGG + chr6_1:88774812-88774831 None:intergenic 45.0%
AGGGAGGTTGAGAAAGAAGA+AGG - chr6_1:88775230-88775249 Msa0897200:CDS 45.0%
!! CATATATTATATATTATATA+TGG - chr6_1:88771646-88771665 Msa0897200:CDS 5.0%
!! CATATATTATATATTATATA+TGG - chr6_1:88771646-88771665 Msa0897200:CDS 5.0%
TTCCAAGCCAACCATAGGTG+TGG - chr6_1:88771784-88771803 Msa0897200:CDS 50.0%
! TTCCACACCTATGGTTGGCT+TGG + chr6_1:88771789-88771808 None:intergenic 50.0%
GCACAAATATGGGACACTGC+CGG - chr6_1:88771851-88771870 Msa0897200:CDS 50.0%
ACGTGTCAGTGTTGTCGTGT+AGG - chr6_1:88772267-88772286 Msa0897200:intron 50.0%
! AGGTGGGACCTTGATGGTAA+TGG - chr6_1:88772902-88772921 Msa0897200:intron 50.0%
! GGTGGGACCTTGATGGTAAT+GGG - chr6_1:88772903-88772922 Msa0897200:intron 50.0%
CGCCAAAACCCGCTAATTCT+TGG - chr6_1:88774086-88774105 Msa0897200:intron 50.0%
! GGTGGGTCTAGGACAAGAAT+TGG - chr6_1:88774420-88774439 Msa0897200:intron 50.0%
TTCCAAGCCAACCATAGGTG+TGG - chr6_1:88771784-88771803 Msa0897200:CDS 50.0%
! TTCCACACCTATGGTTGGCT+TGG + chr6_1:88771789-88771808 None:intergenic 50.0%
GCACAAATATGGGACACTGC+CGG - chr6_1:88771851-88771870 Msa0897200:CDS 50.0%
ACGTGTCAGTGTTGTCGTGT+AGG - chr6_1:88772267-88772286 Msa0897200:intron 50.0%
! AGGTGGGACCTTGATGGTAA+TGG - chr6_1:88772902-88772921 Msa0897200:intron 50.0%
! GGTGGGACCTTGATGGTAAT+GGG - chr6_1:88772903-88772922 Msa0897200:intron 50.0%
CGCCAAAACCCGCTAATTCT+TGG - chr6_1:88774086-88774105 Msa0897200:intron 50.0%
! GGTGGGTCTAGGACAAGAAT+TGG - chr6_1:88774420-88774439 Msa0897200:intron 50.0%
AGGGTGGGGCCAATGTTTGT+GGG + chr6_1:88772582-88772601 None:intergenic 55.0%
AAGGGTGGGGCCAATGTTTG+TGG + chr6_1:88772583-88772602 None:intergenic 55.0%
TTGAGTAAGGTTGGGTGGGG+TGG - chr6_1:88774402-88774421 Msa0897200:intron 55.0%
TGAGTAAGGTTGGGTGGGGT+GGG - chr6_1:88774403-88774422 Msa0897200:intron 55.0%
! ACGGTCATTCCTGACTCGAG+TGG - chr6_1:88774800-88774819 Msa0897200:intron 55.0%
AGGGTGGGGCCAATGTTTGT+GGG + chr6_1:88772582-88772601 None:intergenic 55.0%
AAGGGTGGGGCCAATGTTTG+TGG + chr6_1:88772583-88772602 None:intergenic 55.0%
TTGAGTAAGGTTGGGTGGGG+TGG - chr6_1:88774402-88774421 Msa0897200:intron 55.0%
TGAGTAAGGTTGGGTGGGGT+GGG - chr6_1:88774403-88774422 Msa0897200:intron 55.0%
! ACGGTCATTCCTGACTCGAG+TGG - chr6_1:88774800-88774819 Msa0897200:intron 55.0%
AGGTTGGGTGGGGTGGGTCT+AGG - chr6_1:88774409-88774428 Msa0897200:intron 65.0%
AGGTTGGGTGGGGTGGGTCT+AGG - chr6_1:88774409-88774428 Msa0897200:intron 65.0%
GGGACACTGCCGGCCAAGAG+AGG - chr6_1:88771861-88771880 Msa0897200:CDS 70.0%
GGGACACTGCCGGCCAAGAG+AGG - chr6_1:88771861-88771880 Msa0897200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 88771501 88775610 88771501 ID=Msa0897200;Name=Msa0897200
chr6_1 mRNA 88771501 88775610 88771501 ID=Msa0897200-mRNA-1;Parent=Msa0897200;Name=Msa0897200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=164|1|1|1|1|1|2|126|216
chr6_1 exon 88771501 88772059 88771501 ID=Msa0897200-mRNA-1:exon:15039;Parent=Msa0897200-mRNA-1
chr6_1 exon 88775229 88775610 88775229 ID=Msa0897200-mRNA-1:exon:15038;Parent=Msa0897200-mRNA-1
chr6_1 five_prime_UTR 88775447 88775610 88775447 ID=Msa0897200-mRNA-1:five_prime_utr;Parent=Msa0897200-mRNA-1
chr6_1 CDS 88775229 88775446 88775229 ID=Msa0897200-mRNA-1:cds;Parent=Msa0897200-mRNA-1
chr6_1 CDS 88771627 88772059 88771627 ID=Msa0897200-mRNA-1:cds;Parent=Msa0897200-mRNA-1
chr6_1 three_prime_UTR 88771501 88771626 88771501 ID=Msa0897200-mRNA-1:three_prime_utr;Parent=Msa0897200-mRNA-1
Gene Sequence

>Msa0897200

ATGGCTGATACATTTGATGAGCAGTGTGATTACCTCTTCAAAACCGTTCTAATTGGAGATTCTGGAGTTGGGAAATCAAACCTTATTTCAAGGTTTACAAAAGATGAATTTCGACTTGATTCCAAGCCAACCATAGGTGTGGAATTTGGTTACAAGAACATCAAGGTTAGAGACAAGCTCATCAAAGCACAAATATGGGACACTGCCGGCCAAGAGAGGTTTAGAGCTATCACAAGCTCATACTATAGAGGAGCATTGGGAGCAATGCTAGTCTATGACATAAGCAGGATAATAACTTTTGTTAATATAAAAAAATGGTTACATGAGCTTAGAGAATATGGAAATGAAGACATGGTGATTATACTAGTAGCAAATAAATCTGATTTGAGTCAATCAAGGGAGGTTGAGAAAGAAGAAGGAAAAGGGTTTGCAGAAAGAGAAGGTTTATGTTTTATGGAAACTTCTGCTTTGCAAAATTTAAATGTTGAGGATGCATTCTTAGAAATGATTACTAAGATCCATGATATCATAAGCCATAAAAGTTTGGAAGATAAAATGAATGGGACAAAATTAGGTCTTCCTAATGGAAAGGAAATTCATATAGCTGATGAAGTGACTGCTACTAAACAAGTTAATTGTTGTTATGGATGA
Protein sequence

>Msa0897200

MADTFDEQCDYLFKTVLIGDSGVGKSNLISRFTKDEFRLDSKPTIGVEFGYKNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDISRIITFVNIKKWLHELREYGNEDMVIILVANKSDLSQSREVEKEEGKGFAEREGLCFMETSALQNLNVEDAFLEMITKIHDIISHKSLEDKMNGTKLGLPNGKEIHIADEVTATKQVNCCYG*