AlfalfaGEDB | Msa1080290

M. sativa cultivar zhongmu-4 / Msa1080290

KEGG: -
GO: -
PFAM: PF03194.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080290	XP_003624200.1	99.125	343	2	1	5	346	68	410	0.0	660

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080290	sp\|Q9CYI4\|LUC7L_MOUSE	47.368	114	50	2	147	253	131	241	9.76e-23	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080290	G7KRK9	99.125	343	2	1	5	346	68	410	0.0	660

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1080290	0.812391	4.340297e-51	-8.615850e-47
Msa0003640	Msa1080290	0.817660	2.938974e-52	-8.615850e-47
Msa0003720	Msa1080290	0.813513	2.464092e-51	-8.615850e-47
Msa0011960	Msa1080290	0.816700	4.832163e-52	-8.615850e-47
Msa0020390	Msa1080290	0.824402	8.228855e-54	-8.615850e-47
Msa0024710	Msa1080290	0.820108	8.163941e-53	-8.615850e-47
Msa0026710	Msa1080290	0.804525	2.071432e-49	-8.615850e-47
Msa0027230	Msa1080290	0.814078	1.849738e-51	-8.615850e-47
Msa0027260	Msa1080290	0.845931	2.985345e-59	-8.615850e-47
Msa0029260	Msa1080290	0.805195	1.501075e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080290	MtrunA17_Chr7g0249531	99.125	343	2	1	5	346	68	410	0.0	660
Msa1080290	MtrunA17_Chr4g0021001	27.941	136	92	2	146	280	135	265	1.67e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080290	AT3G03340.1	73.392	342	84	3	5	346	68	402	5.33e-141	405
Msa1080290	AT3G03340.2	73.392	342	84	3	5	346	146	480	2.96e-140	406
Msa1080290	AT5G17440.1	77.778	252	54	1	5	256	68	317	4.77e-135	390
Msa1080290	AT3G03340.3	77.381	252	55	1	5	256	68	317	7.24e-135	387
Msa1080290	AT5G17440.2	76.389	216	49	1	5	220	68	281	1.75e-111	326

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Find 101 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATTTGTCCAAGACA+AGG	0.599616	7_2:-79736009	None:intergenic
AACGGAGTAGGGATCGTGAC+AGG	0.443961	7_2:+79735450	Msa1080290:CDS
AAGATAACTTACTTGAAGTT+CGG	0.438627	7_2:-79734614	None:intergenic
AAGGGACTGATAGTTACGAG+AGG	0.704405	7_2:+79731057	Msa1080290:CDS
AATCACCACCTGAGTAACTT+CGG	0.604512	7_2:-79731192	None:intergenic
AATGGTGGCTCCTGCCTGGA+AGG	0.520384	7_2:-79733934	None:intergenic
AATTAAAAGAGCAGACAAAC+AGG	0.474940	7_2:+79731848	Msa1080290:CDS
ACAGATCAAAAGAACGGAGT+AGG	0.538832	7_2:+79735438	Msa1080290:intron
ACAGGAAGGGGTGCTAGCGG+TGG	0.594793	7_2:-79732111	None:intergenic
ACCGTGGATATGATCGAGAT+CGG	0.556484	7_2:+79735567	Msa1080290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGAGAGAATAATATAGG+GGG	+	chr7_2:79731430-79731449	Msa1080290:intron	30.0%
ATTCATTCATATCATACCCA+CGG	-	chr7_2:79731563-79731582	None:intergenic	30.0%
AATTAAAAGAGCAGACAAAC+AGG	+	chr7_2:79731848-79731867	Msa1080290:CDS	30.0%
AACTTTACTGTCTAACGAAT+TGG	-	chr7_2:79731939-79731958	None:intergenic	30.0%
TAGATGCATTCAACAAAGAT+AGG	+	chr7_2:79732058-79732077	Msa1080290:CDS	30.0%
AGATGCATTCAACAAAGATA+GGG	+	chr7_2:79732059-79732078	Msa1080290:CDS	30.0%
TAGTTATTGGAGTAGTTAAG+TGG	-	chr7_2:79732453-79732472	None:intergenic	30.0%
TCCTAAGAAAATGATTAGGT+TGG	-	chr7_2:79732528-79732547	None:intergenic	30.0%
TGGTTCCTAAGAAAATGATT+AGG	-	chr7_2:79732532-79732551	None:intergenic	30.0%
TTTCTTCATCCAATACACAT+AGG	+	chr7_2:79732775-79732794	Msa1080290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	79731026	79736237	79731026	ID=Msa1080290;Name=Msa1080290
chr7_2	mRNA	79731026	79736237	79731026	ID=Msa1080290-mRNA-1;Parent=Msa1080290;Name=Msa1080290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|1\|0.90\|1\|0.9\|1\|11\|285\|346
chr7_2	exon	79731026	79731205	79731026	ID=Msa1080290-mRNA-1:exon:20055;Parent=Msa1080290-mRNA-1
chr7_2	exon	79731294	79731357	79731294	ID=Msa1080290-mRNA-1:exon:20056;Parent=Msa1080290-mRNA-1
chr7_2	exon	79731790	79731869	79731790	ID=Msa1080290-mRNA-1:exon:20057;Parent=Msa1080290-mRNA-1
chr7_2	exon	79732045	79732198	79732045	ID=Msa1080290-mRNA-1:exon:20058;Parent=Msa1080290-mRNA-1
chr7_2	exon	79733682	79733743	79733682	ID=Msa1080290-mRNA-1:exon:20059;Parent=Msa1080290-mRNA-1
chr7_2	exon	79733931	79733993	79733931	ID=Msa1080290-mRNA-1:exon:20060;Parent=Msa1080290-mRNA-1
chr7_2	exon	79734170	79734228	79734170	ID=Msa1080290-mRNA-1:exon:20061;Parent=Msa1080290-mRNA-1
chr7_2	exon	79734543	79734624	79734543	ID=Msa1080290-mRNA-1:exon:20062;Parent=Msa1080290-mRNA-1
chr7_2	exon	79735298	79735344	79735298	ID=Msa1080290-mRNA-1:exon:20063;Parent=Msa1080290-mRNA-1
chr7_2	exon	79735442	79735672	79735442	ID=Msa1080290-mRNA-1:exon:20064;Parent=Msa1080290-mRNA-1
chr7_2	exon	79735934	79736237	79735934	ID=Msa1080290-mRNA-1:exon:20065;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79731026	79731205	79731026	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79731294	79731357	79731294	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79731790	79731869	79731790	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79732045	79732198	79732045	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79733682	79733743	79733682	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79733931	79733993	79733931	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79734170	79734228	79734170	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79734543	79734624	79734543	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79735298	79735344	79735298	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79735442	79735672	79735442	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	CDS	79735934	79735952	79735934	ID=Msa1080290-mRNA-1:cds;Parent=Msa1080290-mRNA-1
chr7_2	three_prime_UTR	79735953	79736237	79735953	ID=Msa1080290-mRNA-1:three_prime_utr;Parent=Msa1080290-mRNA-1

Gene Sequence

>Msa1080290

CTGTTTTTTAGATATGAGGAAGCTAAATCCAAAGGGACTGATAGTTACGAGAGGGAGTTGGAGGATGTTATAGATAAGCTTATTGGTGAATGTGATAGGAAAATTGGTAGAGCTCTTAAGCGTCTTGAGGATGATGATGCCAAAGCCGCAATTGCAATTTCAGTATCCGAAGTTACTCAGACACCTGAAATACTTGAGTTGTCCAAAGAAATCAAAGAAAAGTTGAAAGAAGCTGATAAATTTGATCTTGAAGGCTTGTCGGATATGAAGATTCGAGCTCTGGAGATTGTAGAGGAGCTTCGAATTAAAAGAGCAGACAAACAGTCTACGCTTCTTTTAGATGCATTCAACAAAGATAGGGCATCTTTACCTCAACCTCTGCCAAATCCACCACCGCTAGCACCCCTTCCTGTAGTTACTCCCGATGCTCGAACACAAGAGATGATAAATGAAAAGTTGAAGAAGGCTGAGGATCTTGGTGAGCAAGGATTGATTGATGAGGCACAGAAAGCATTGGAAGAGGCTGAAGCACTTAAGAAGCTTCCTTCCAGGCAGGAGCCACCATTGGATTCTTCGAAGTACACAGCTGCTGATGTGCGGATTACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGTGATCGTCGATTAGCTGATCATTTTGGAGGGAAACTTCATTTAGGCTATATGCAAATCCGTGAGAAGTTGGCCGAACTTCAAGAAGAAAGAAACAAGAGCCGTAAGATTGATCGTCTTGATGACAGGAGATCAAAAGAACGGAGTAGGGATCGTGACAGGGAGCCTAGTAGGGACCGTGAACGTGGTGAGAGCCATGAGCGAGGGCGAGACAATGATCGTAGGAGCAGAGATCGTGACAGGCACCATGATAGAGACCGTGGATATGATCGAGATCGGGACAGAGACTCATCCCGCTATGATTCAAGAAGTCGCCGGAGGTCACGATCTCGAGAGCGTTCTAGAGATTATGATCGTCACAGGCGTCATGATCGGTACTAG

Protein sequence

>Msa1080290

LFFRYEEAKSKGTDSYERELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEILELSKEIKEKLKEADKFDLEGLSDMKIRALEIVEELRIKRADKQSTLLLDAFNKDRASLPQPLPNPPPLAPLPVVTPDARTQEMINEKLKKAEDLGEQGLIDEAQKALEEAEALKKLPSRQEPPLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKIDRLDDRRSKERSRDRDREPSRDRERGESHERGRDNDRRSRDRDRHHDRDRGYDRDRDRDSSRYDSRSRRRSRSRERSRDYDRHRRHDRY*