AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249200 MtrunA17_Chr2g0304541 95.812 382 9 1 1 382 170 544 0.0 736
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249200 AT2G12550.1 53.708 391 165 4 1 377 170 558 1.36e-146 427

Find 109 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTAACTATAAAGTTTA+AGG 0.076212 2_2:-35373923 Msa0249200:three_prime_UTR
CTTCAAATCATCTTCTTATT+TGG 0.145142 2_2:+35374112 None:intergenic
TGTAAATCAGAATTGGTTTC+TGG 0.155036 2_2:+35374737 None:intergenic
CAGATCCACGGCCTTCTTTA+AGG 0.187611 2_2:+35375049 None:intergenic
GCTGAGACTGTTCTCAAATT+AGG 0.220899 2_2:-35373840 Msa0249200:three_prime_UTR
CTGAATGAATTGGTCACTAT+TGG 0.255516 2_2:-35375020 Msa0249200:CDS
CTACTCACCTCAATGACTTT+TGG 0.271684 2_2:+35377806 None:intergenic
AGAAACCAATTCTGATTTAC+AGG 0.272571 2_2:-35374735 Msa0249200:intron
GGGGTGGTGGCATTTCATTC+TGG 0.301341 2_2:-35375929 Msa0249200:CDS
TCATGCTACGGGACATTAGA+TGG 0.315239 2_2:-35376233 Msa0249200:CDS
GATCTTCAACCCCATTCATT+TGG 0.359756 2_2:+35374291 None:intergenic
GAACTAACTATAAAGTTTAA+GGG 0.363981 2_2:-35373922 Msa0249200:three_prime_UTR
CTTAAAGAAGGCCGTGGATC+TGG 0.374229 2_2:-35375048 Msa0249200:CDS
AGATCCACGGCCTTCTTTAA+GGG 0.381674 2_2:+35375050 None:intergenic
TGTTACCTGTAAATCAGAAT+TGG 0.383655 2_2:+35374730 None:intergenic
ACCATGTCAATTTGCAGTAT+TGG 0.385264 2_2:+35376267 None:intergenic
TGCAAAAGCGAAGTTTGTTC+AGG 0.395049 2_2:-35375873 Msa0249200:intron
TGAATGAATTGGTCACTATT+GGG 0.396558 2_2:-35375019 Msa0249200:intron
AGGGATCTCATGTAAATATC+TGG 0.397522 2_2:-35374022 Msa0249200:three_prime_UTR
CTTGCCTTGATTTCTCCAAC+TGG 0.414108 2_2:+35375906 None:intergenic
GTGTTTCTGCTCTTTGACGC+AGG 0.422633 2_2:-35374042 Msa0249200:three_prime_UTR
GAATGAACAATCAAGATGTT+GGG 0.423602 2_2:-35375249 Msa0249200:CDS
CATTGACAGGTACTCAGTTA+TGG 0.425383 2_2:+35374157 None:intergenic
TACATTTGTGCTCATTCCCT+AGG 0.425792 2_2:-35373994 Msa0249200:three_prime_UTR
TTCCTGCCCTAGCCATTTCA+AGG 0.427968 2_2:+35376190 None:intergenic
TGCTGGAAAGCGCCTTGAAA+TGG 0.430491 2_2:-35376202 Msa0249200:CDS
GACATTCTAGACCAAATGAA+TGG 0.434790 2_2:-35374302 Msa0249200:CDS
TGCCATTGATTTCCTTGTTG+AGG 0.440595 2_2:-35375224 Msa0249200:CDS
GACATTGAAGTTAATATTGA+AGG 0.441170 2_2:-35374185 Msa0249200:CDS
CCAGGGAGCAAAAGCGGTAT+GGG 0.441248 2_2:-35375079 Msa0249200:intron
CGAATGAACAATCAAGATGT+TGG 0.443559 2_2:-35375250 Msa0249200:CDS
GCAGCAGTTGAATTCATTTG+AGG 0.444304 2_2:+35374377 None:intergenic
AGAAGAAAGGGATGTGGAGA+TGG 0.456681 2_2:-35374258 Msa0249200:CDS
ATCACAATAAAACAGAAGAA+AGG 0.465013 2_2:-35374271 Msa0249200:CDS
TATCAGTTTATGTAAATAGC+AGG 0.466133 2_2:-35374083 Msa0249200:three_prime_UTR
GGCATTTCATTCTGGCCAGT+TGG 0.467585 2_2:-35375921 Msa0249200:CDS
GGTTGCATATTCTCCGCCTC+AGG 0.467805 2_2:+35374398 None:intergenic
TTGAGACTAGAGCTGCTTGA+AGG 0.470120 2_2:-35375950 Msa0249200:CDS
ACATTCTAGACCAAATGAAT+GGG 0.470306 2_2:-35374301 Msa0249200:CDS
ACAAGTGATAAGGCCTCATC+TGG 0.470489 2_2:+35375316 None:intergenic
CTGTCAATGGTTGAGTCTGC+AGG 0.473670 2_2:-35374143 Msa0249200:CDS
TCCAGGGAGCAAAAGCGGTA+TGG 0.475210 2_2:-35375080 Msa0249200:intron
TGATTTCCTTGTTGAGGAGA+AGG 0.485527 2_2:-35375218 Msa0249200:CDS
TCACAATAAAACAGAAGAAA+GGG 0.485998 2_2:-35374270 Msa0249200:CDS
CGCCTTGAAATGGCTAGGGC+AGG 0.494912 2_2:-35376192 Msa0249200:CDS
CTTATCACTTGTTATGAGCA+TGG 0.500815 2_2:-35375305 Msa0249200:CDS
CATGCTCATAACAAGTGATA+AGG 0.501636 2_2:+35375306 None:intergenic
AGAAAGGGATGTGGAGATGG+AGG 0.502336 2_2:-35374255 Msa0249200:CDS
TTCAATGTCATAATCAGTAA+AGG 0.506090 2_2:+35374199 None:intergenic
ATAACTCACAGTGCAACCTC+TGG 0.506415 2_2:+35376108 None:intergenic
GCAGGAATTGAACGTGCTCA+TGG 0.514358 2_2:-35376174 Msa0249200:CDS
CTCTCTGCAGATATAGCTAA+AGG 0.515262 2_2:-35374227 Msa0249200:CDS
ATTAGATGGTTATCAGATGC+TGG 0.515816 2_2:-35376219 Msa0249200:CDS
ACATTGAAGTTAATATTGAA+GGG 0.516059 2_2:-35374184 Msa0249200:CDS
TGAGCATGGGCTACACTCAA+AGG 0.519721 2_2:-35375291 Msa0249200:CDS
ATCTCATGTAAATATCTGGA+TGG 0.519920 2_2:-35374018 Msa0249200:three_prime_UTR
CTGGCCAGTTGGAGAAATCA+AGG 0.520361 2_2:-35375910 Msa0249200:CDS
TTATCACTTGTTATGAGCAT+GGG 0.521383 2_2:-35375304 Msa0249200:CDS
TCTGGAGAGACTGAATGAAT+TGG 0.523247 2_2:-35375030 Msa0249200:CDS
GATCCACGGCCTTCTTTAAG+GGG 0.523385 2_2:+35375051 None:intergenic
CTCCTCAACAAGGAAATCAA+TGG 0.528274 2_2:+35375222 None:intergenic
CTAATTATTATAGAAACCCT+AGG 0.530124 2_2:+35373977 None:intergenic
ACATTTGTGCTCATTCCCTA+GGG 0.532330 2_2:-35373993 Msa0249200:three_prime_UTR
TGAGACTAGAGCTGCTTGAA+GGG 0.538710 2_2:-35375949 Msa0249200:CDS
TACATCTTGCAGGTTTGAGA+AGG 0.542416 2_2:-35374828 Msa0249200:intron
AAATGATACTCAGAAGGCAT+TGG 0.543068 2_2:-35374774 Msa0249200:CDS
GAGCATGGGCTACACTCAAA+GGG 0.544631 2_2:-35375290 Msa0249200:CDS
TTAAGATCGAGTCAAGGAAA+AGG 0.546564 2_2:-35374641 Msa0249200:CDS
AGAGCTGCTTGAAGGGGTGG+TGG 0.548955 2_2:-35375942 Msa0249200:CDS
TGTTTCTGCTCTTTGACGCA+GGG 0.551982 2_2:-35374041 Msa0249200:three_prime_UTR
TACTGCAAATTGACATGGTA+TGG 0.553370 2_2:-35376263 Msa0249200:CDS
CATAACTGAGTACCTGTCAA+TGG 0.556905 2_2:-35374156 Msa0249200:CDS
TAGCAGGATTATAAAGACAA+TGG 0.563927 2_2:-35374067 Msa0249200:three_prime_UTR
CAGGAATTGAACGTGCTCAT+GGG 0.566377 2_2:-35376173 Msa0249200:CDS
TTGTGATCCAAAAGTCATTG+AGG 0.569044 2_2:-35377813 Msa0249200:intron
TATGGTGCTACTTCATGCTA+CGG 0.569586 2_2:-35376245 Msa0249200:CDS
TTCATTCCAGGGAGCAAAAG+CGG 0.576218 2_2:-35375085 Msa0249200:intron
TAAAACAGAAGAAAGGGATG+TGG 0.577129 2_2:-35374264 Msa0249200:CDS
CTCCGCCTCAGACTCTTACA+AGG 0.581292 2_2:-35376141 Msa0249200:CDS
CTGCAGACTCAACCATTGAC+AGG 0.584881 2_2:+35374144 None:intergenic
ATGGTGCTACTTCATGCTAC+GGG 0.586062 2_2:-35376244 Msa0249200:CDS
ACTAGAGCTGCTTGAAGGGG+TGG 0.592346 2_2:-35375945 Msa0249200:CDS
GAAAGCGCCTTGAAATGGCT+AGG 0.596531 2_2:-35376197 Msa0249200:CDS
TCGGAATGTGGTAACTGGTG+TGG 0.596850 2_2:-35373784 Msa0249200:three_prime_UTR
AATTGAACGTGCTCATGGGA+AGG 0.600472 2_2:-35376169 Msa0249200:CDS
AAAGCGCCTTGAAATGGCTA+GGG 0.603487 2_2:-35376196 Msa0249200:CDS
AAATGAAAATGATACTCAGA+AGG 0.604629 2_2:-35374780 Msa0249200:CDS
CATTGAAGTTAATATTGAAG+GGG 0.605658 2_2:-35374183 Msa0249200:CDS
TCTCATGTAAATATCTGGAT+GGG 0.609184 2_2:-35374017 Msa0249200:three_prime_UTR
GAGACTGTTCTCAAATTAGG+TGG 0.609288 2_2:-35373837 Msa0249200:three_prime_UTR
GAGACTAGAGCTGCTTGAAG+GGG 0.611311 2_2:-35375948 Msa0249200:CDS
TCTTTGCCTTCTCCTCAACA+AGG 0.617660 2_2:+35375212 None:intergenic
ACTGACAGCACAACCTGAGG+CGG 0.628091 2_2:-35374411 Msa0249200:CDS
ATTCAGTCTCTCCAGATCCA+CGG 0.632649 2_2:+35375037 None:intergenic
GACCACCTTGTAAGAGTCTG+AGG 0.637141 2_2:+35376136 None:intergenic
AATGAACAATCAAGATGTTG+GGG 0.637210 2_2:-35375248 Msa0249200:CDS
TAAGGAACTAACCTCTCCCA+TGG 0.639510 2_2:+35378540 None:intergenic
TCCAATACTGCAAATTGACA+TGG 0.640785 2_2:-35376268 Msa0249200:CDS
ACAAGGTGGTCGTTATCCAG+AGG 0.651224 2_2:-35376124 Msa0249200:CDS
ATCCACGGCCTTCTTTAAGG+GGG 0.652056 2_2:+35375052 None:intergenic
CAGGGAGCAAAAGCGGTATG+GGG 0.658721 2_2:-35375078 Msa0249200:CDS
ACAGCTGCAAGTGCCAGATG+AGG 0.661882 2_2:-35375329 Msa0249200:intron
TAATTATTATAGAAACCCTA+GGG 0.662722 2_2:+35373978 None:intergenic
CGCCTCAGACTCTTACAAGG+TGG 0.663380 2_2:-35376138 Msa0249200:CDS
TAAAGGTTAAGATCGAGTCA+AGG 0.665127 2_2:-35374647 Msa0249200:intron
AAGACTGACAGCACAACCTG+AGG 0.672354 2_2:-35374414 Msa0249200:CDS
CATTCTAGACCAAATGAATG+GGG 0.681680 2_2:-35374300 Msa0249200:CDS
CACCTTGTAAGAGTCTGAGG+CGG 0.705300 2_2:+35376139 None:intergenic
ATGAACAATCAAGATGTTGG+GGG 0.720357 2_2:-35375247 Msa0249200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGATAATTATTTTAATA+AGG + chr2_2:35373788-35373807 None:intergenic 10.0%
!!! TATAATTTTCTAACTTTTTT+AGG + chr2_2:35374911-35374930 None:intergenic 10.0%
!! TAAAAAAGTTAGAAAATTAT+AGG - chr2_2:35374910-35374929 Msa0249200:intron 10.0%
!! ATTAAAAGTAGATTAATTAT+CGG - chr2_2:35376285-35376304 Msa0249200:CDS 10.0%
!!! TTTAAGTTAATGCTTTTATT+AGG - chr2_2:35373939-35373958 Msa0249200:three_prime_UTR 15.0%
!!! TTAAGTTAATGCTTTTATTA+GGG - chr2_2:35373940-35373959 Msa0249200:three_prime_UTR 15.0%
!!! AATAAGAGTTTTACAAATTT+TGG - chr2_2:35374021-35374040 Msa0249200:three_prime_UTR 15.0%
!! TTATTGTTATAAGGAAAGAT+AGG + chr2_2:35374006-35374025 None:intergenic 20.0%
!! GTAAAACTCTTATTGTTATA+AGG + chr2_2:35374015-35374034 None:intergenic 20.0%
!!! ACATGGAATTTTTCAATTAA+TGG + chr2_2:35374444-35374463 None:intergenic 20.0%
!! AACTAAAATAAATAATTGGC+AGG + chr2_2:35374571-35374590 None:intergenic 20.0%
!!! CAATTTTTATTGCAAAGAAT+TGG - chr2_2:35374644-35374663 Msa0249200:CDS 20.0%
!!! TTTTAGGTTAAACGTTTTTT+GGG + chr2_2:35374895-35374914 None:intergenic 20.0%
!!! TTTTTAGGTTAAACGTTTTT+TGG + chr2_2:35374896-35374915 None:intergenic 20.0%
!!! AAGTTAAAATTGTTTCTTCA+GGG + chr2_2:35374946-35374965 None:intergenic 20.0%
!!! TAAGTTAAAATTGTTTCTTC+AGG + chr2_2:35374947-35374966 None:intergenic 20.0%
!! CTAAAAAAGAAAATTCCAAT+GGG - chr2_2:35374983-35375002 Msa0249200:intron 20.0%
!! ACACGAAATATATAGAATAA+AGG - chr2_2:35375074-35375093 Msa0249200:CDS 20.0%
!! CACGAAATATATAGAATAAA+GGG - chr2_2:35375075-35375094 Msa0249200:CDS 20.0%
!! ACGAAATATATAGAATAAAG+GGG - chr2_2:35375076-35375095 Msa0249200:CDS 20.0%
!!! CTTTTAAGATGATTTTCTAT+AGG - chr2_2:35375464-35375483 Msa0249200:intron 20.0%
!!! CCTTAAAATTTTTTTGTCAA+AGG + chr2_2:35375547-35375566 None:intergenic 20.0%
!!! CCTTTGACAAAAAAATTTTA+AGG - chr2_2:35375544-35375563 Msa0249200:intron 20.0%
!! TCAAATGAGTTCTTATATTT+AGG + chr2_2:35375603-35375622 None:intergenic 20.0%
!! ATGTATCTAGTAATTTGAAA+AGG + chr2_2:35375653-35375672 None:intergenic 20.0%
!! CACTCTTAATAAAAAAAAGT+TGG + chr2_2:35375822-35375841 None:intergenic 20.0%
!! AATATAAAAGGTAGCAAAAT+TGG + chr2_2:35376678-35376697 None:intergenic 20.0%
!! TATGTTATATGCATACTATT+TGG + chr2_2:35376770-35376789 None:intergenic 20.0%
!! TAAAAAGAAGAGATGAAATT+AGG - chr2_2:35377142-35377161 Msa0249200:intron 20.0%
!!! ACTTTTCATTTTCTTTATCT+CGG - chr2_2:35377188-35377207 Msa0249200:intron 20.0%
!!! ATCATTTTCATTTCTTCTAA+GGG + chr2_2:35377520-35377539 None:intergenic 20.0%
!!! TATCATTTTCATTTCTTCTA+AGG + chr2_2:35377521-35377540 None:intergenic 20.0%
!! ACTTACATTTATCAACATAA+AGG - chr2_2:35377643-35377662 Msa0249200:intron 20.0%
!!! AATTAACATTTTCTGGTAAA+GGG + chr2_2:35377983-35378002 None:intergenic 20.0%
!! ACATTGAAGTTAATATTGAA+GGG - chr2_2:35378123-35378142 Msa0249200:intron 20.0%
!! TAATTATTATAGAAACCCTA+GGG + chr2_2:35378332-35378351 None:intergenic 20.0%
!! GAACTAACTATAAAGTTTAA+GGG - chr2_2:35378385-35378404 Msa0249200:intron 20.0%
!!! GAAAAATTTCTTACTCTTTT+CGG - chr2_2:35378504-35378523 Msa0249200:intron 20.0%
!!! TTTTGAAATTGTTGTAGAAG+CGG - chr2_2:35373836-35373855 Msa0249200:three_prime_UTR 25.0%
!!! TACAAATTTTGGTGTTACTT+TGG - chr2_2:35374032-35374051 Msa0249200:three_prime_UTR 25.0%
! TTAACGAAAAGAAAGTAAGA+TGG + chr2_2:35374094-35374113 None:intergenic 25.0%
!!! AAACTCACCTTTTAATTAGA+AGG - chr2_2:35374263-35374282 Msa0249200:CDS 25.0%
! AATACAAATAGTCTATAGTC+TGG + chr2_2:35374528-35374547 None:intergenic 25.0%
! ACTATAGACTATTTGTATTG+TGG - chr2_2:35374529-35374548 Msa0249200:intron 25.0%
!! TGTATGTAAATAATGGAACA+GGG + chr2_2:35374778-35374797 None:intergenic 25.0%
! ATCACACTGTATGTAAATAA+TGG + chr2_2:35374785-35374804 None:intergenic 25.0%
! AAAAGGAATAATGTTAGATC+TGG + chr2_2:35374828-35374847 None:intergenic 25.0%
! TAGATTTAAGGGAAAACAAA+AGG + chr2_2:35374845-35374864 None:intergenic 25.0%
!!! TTTAGGTTAAACGTTTTTTG+GGG + chr2_2:35374894-35374913 None:intergenic 25.0%
!!! GAATTTTCTTTTTTAGGTGA+GGG + chr2_2:35374979-35374998 None:intergenic 25.0%
!! CCATTGGAATTTTCTTTTTT+AGG + chr2_2:35374985-35375004 None:intergenic 25.0%
! CCTAAAAAAGAAAATTCCAA+TGG - chr2_2:35374982-35375001 Msa0249200:intron 25.0%
! TATATAGAATAAAGGGGAAT+TGG - chr2_2:35375082-35375101 Msa0249200:intron 25.0%
!!! GAATAATTGACTTTTATGAC+TGG - chr2_2:35375232-35375251 Msa0249200:CDS 25.0%
! TCATCTTAAAAGAAACCAAT+GGG + chr2_2:35375456-35375475 None:intergenic 25.0%
! ATCATCTTAAAAGAAACCAA+TGG + chr2_2:35375457-35375476 None:intergenic 25.0%
!! AGATGATTTTCTATAGGATT+TGG - chr2_2:35375470-35375489 Msa0249200:intron 25.0%
!! GATGATTTTCTATAGGATTT+GGG - chr2_2:35375471-35375490 Msa0249200:intron 25.0%
! TTCTTATATTTAGGTACAGA+GGG + chr2_2:35375594-35375613 None:intergenic 25.0%
! GTATTAATTAGGGGTTTATT+TGG + chr2_2:35375690-35375709 None:intergenic 25.0%
! AGACTTAGTGGTATTAATTA+GGG + chr2_2:35375700-35375719 None:intergenic 25.0%
! AAGTCTCTTGGAATATTAAA+AGG - chr2_2:35375714-35375733 Msa0249200:intron 25.0%
! TTAAGAGTGAAAAAATCAGA+AGG - chr2_2:35375833-35375852 Msa0249200:intron 25.0%
! AAGACATGTGAAAAAGAATT+TGG + chr2_2:35375960-35375979 None:intergenic 25.0%
!! TTTTTCTTCACACTTTATGT+TGG - chr2_2:35376312-35376331 Msa0249200:intron 25.0%
!!! TTGGCTGAATTTTTTTACAT+AGG - chr2_2:35376331-35376350 Msa0249200:intron 25.0%
! TACTGTGTTAAATTGAGTAA+GGG - chr2_2:35376477-35376496 Msa0249200:intron 25.0%
!!! TCAACATTTACTGATTTTGA+TGG - chr2_2:35376597-35376616 Msa0249200:intron 25.0%
! AAAAAGAACATTGTACAGAA+AGG + chr2_2:35376954-35376973 None:intergenic 25.0%
! AAAGAAAAAGCAAAAAGATG+AGG - chr2_2:35377113-35377132 Msa0249200:intron 25.0%
! TTTCTGAATATTTCATTCCA+GGG - chr2_2:35377211-35377230 Msa0249200:intron 25.0%
!!! GTGTTATTTTGTTGTTGTAT+TGG - chr2_2:35377314-35377333 Msa0249200:intron 25.0%
! CTTATGATTTATTCATGTTG+TGG - chr2_2:35377355-35377374 Msa0249200:intron 25.0%
! AAATGAAAATGATACTCAGA+AGG - chr2_2:35377527-35377546 Msa0249200:intron 25.0%
!! GTTTGAAGTTGCATATAATT+TGG + chr2_2:35377614-35377633 None:intergenic 25.0%
! AATTGAAAAAGTTGTGCAAA+TGG - chr2_2:35377718-35377737 Msa0249200:intron 25.0%
! ATTGAAAAAGTTGTGCAAAT+GGG - chr2_2:35377719-35377738 Msa0249200:intron 25.0%
! AACCTAGATATAGAGATATA+AGG - chr2_2:35377797-35377816 Msa0249200:intron 25.0%
! ACCTAGATATAGAGATATAA+GGG - chr2_2:35377798-35377817 Msa0249200:intron 25.0%
!!! GAATTAACATTTTCTGGTAA+AGG + chr2_2:35377984-35378003 None:intergenic 25.0%
!! ATGTCAGAATTAACATTTTC+TGG + chr2_2:35377990-35378009 None:intergenic 25.0%
! ATCACAATAAAACAGAAGAA+AGG - chr2_2:35378036-35378055 Msa0249200:intron 25.0%
! TCACAATAAAACAGAAGAAA+GGG - chr2_2:35378037-35378056 Msa0249200:intron 25.0%
! TTCAATGTCATAATCAGTAA+AGG + chr2_2:35378111-35378130 None:intergenic 25.0%
! GACATTGAAGTTAATATTGA+AGG - chr2_2:35378122-35378141 Msa0249200:intron 25.0%
! CATTGAAGTTAATATTGAAG+GGG - chr2_2:35378124-35378143 Msa0249200:intron 25.0%
! CTTCAAATCATCTTCTTATT+TGG + chr2_2:35378198-35378217 None:intergenic 25.0%
! TATCAGTTTATGTAAATAGC+AGG - chr2_2:35378224-35378243 Msa0249200:intron 25.0%
! CTAATTATTATAGAAACCCT+AGG + chr2_2:35378333-35378352 None:intergenic 25.0%
! CGAACTAACTATAAAGTTTA+AGG - chr2_2:35378384-35378403 Msa0249200:intron 25.0%
! TTCAAAAACATAATGTTGTC+AGG - chr2_2:35378414-35378433 Msa0249200:intron 25.0%
TCATATTACATTGAGCACAA+TGG + chr2_2:35373885-35373904 None:intergenic 30.0%
ATTGTGCTCAATGTAATATG+AGG - chr2_2:35373884-35373903 Msa0249200:three_prime_UTR 30.0%
AATTATGTTCGAAAACTCCT+TGG + chr2_2:35373978-35373997 None:intergenic 30.0%
AGAAAGTAAGATGGAAGATA+GGG + chr2_2:35374085-35374104 None:intergenic 30.0%
AAGAAAGTAAGATGGAAGAT+AGG + chr2_2:35374086-35374105 None:intergenic 30.0%
TATTCATTAACCAGCCATAA+AGG - chr2_2:35374125-35374144 Msa0249200:exon 30.0%
TTGTGATAGCTTAACCTTTA+TGG + chr2_2:35374142-35374161 None:intergenic 30.0%
!! TCACCTTTTAATTAGAAGGA+TGG - chr2_2:35374267-35374286 Msa0249200:CDS 30.0%
!! CACCTTTTAATTAGAAGGAT+GGG - chr2_2:35374268-35374287 Msa0249200:CDS 30.0%
!! ACCTTTTAATTAGAAGGATG+GGG - chr2_2:35374269-35374288 Msa0249200:CDS 30.0%
ATTGCCGATGACTATTAAAT+AGG + chr2_2:35374628-35374647 None:intergenic 30.0%
! GTATGTAAATAATGGAACAG+GGG + chr2_2:35374777-35374796 None:intergenic 30.0%
! CTGTATGTAAATAATGGAAC+AGG + chr2_2:35374779-35374798 None:intergenic 30.0%
CTCTCGTCAATTAGATTTAA+GGG + chr2_2:35374856-35374875 None:intergenic 30.0%
TCTCTCGTCAATTAGATTTA+AGG + chr2_2:35374857-35374876 None:intergenic 30.0%
!!! GGAATTTTCTTTTTTAGGTG+AGG + chr2_2:35374980-35374999 None:intergenic 30.0%
!! TGTAAGAGCAATTAGTTTGT+TGG - chr2_2:35375118-35375137 Msa0249200:intron 30.0%
!! TTGTTGGTTGGTTTGTTATA+CGG - chr2_2:35375134-35375153 Msa0249200:intron 30.0%
ACAGAAGAAGTAAGAAGATA+AGG + chr2_2:35375365-35375384 None:intergenic 30.0%
CATCTTAAAAGAAACCAATG+GGG + chr2_2:35375455-35375474 None:intergenic 30.0%
GTTCTTATATTTAGGTACAG+AGG + chr2_2:35375595-35375614 None:intergenic 30.0%
TGAAAAGGAACTTATGTGTA+GGG + chr2_2:35375638-35375657 None:intergenic 30.0%
TTGAAAAGGAACTTATGTGT+AGG + chr2_2:35375639-35375658 None:intergenic 30.0%
GACTTAGTGGTATTAATTAG+GGG + chr2_2:35375699-35375718 None:intergenic 30.0%
GAGACTTAGTGGTATTAATT+AGG + chr2_2:35375701-35375720 None:intergenic 30.0%
ATTAATACCACTAAGTCTCT+TGG - chr2_2:35375702-35375721 Msa0249200:intron 30.0%
TAATATTCCAAGAGACTTAG+TGG + chr2_2:35375712-35375731 None:intergenic 30.0%
! TTTTCCACATACACATACAA+AGG - chr2_2:35375742-35375761 Msa0249200:intron 30.0%
TTTCCACATACACATACAAA+GGG - chr2_2:35375743-35375762 Msa0249200:intron 30.0%
!! ACACATACAAAGGGTATTAT+AGG - chr2_2:35375752-35375771 Msa0249200:intron 30.0%
!!! ATCAGAAGGTGCTTTTATAT+AGG - chr2_2:35375847-35375866 Msa0249200:intron 30.0%
! TTTGAAATTCTCAAGCTACT+GGG - chr2_2:35376257-35376276 Msa0249200:CDS 30.0%
CTTACTCAATTTAACACAGT+AGG + chr2_2:35376478-35376497 None:intergenic 30.0%
CTACTGTGTTAAATTGAGTA+AGG - chr2_2:35376476-35376495 Msa0249200:intron 30.0%
ACTGTGTTAAATTGAGTAAG+GGG - chr2_2:35376478-35376497 Msa0249200:intron 30.0%
AAACAATGATACCGAAAAAC+TGG + chr2_2:35376526-35376545 None:intergenic 30.0%
TCATATATCATTGAGATCAG+AGG - chr2_2:35376570-35376589 Msa0249200:intron 30.0%
! CTTCTTTGAAAGAGAAAATG+AGG + chr2_2:35376724-35376743 None:intergenic 30.0%
CTCTTTCAAAGAAGAAGAAA+AGG - chr2_2:35376730-35376749 Msa0249200:intron 30.0%
TCAATCATGGATTCAGTATT+TGG - chr2_2:35376878-35376897 Msa0249200:intron 30.0%
!! TTATCACTTGTTATGAGCAT+GGG - chr2_2:35377003-35377022 Msa0249200:intron 30.0%
GAATGAACAATCAAGATGTT+GGG - chr2_2:35377058-35377077 Msa0249200:intron 30.0%
AATGAACAATCAAGATGTTG+GGG - chr2_2:35377059-35377078 Msa0249200:intron 30.0%
AAAGAAGAGATGAAATTAGG+TGG - chr2_2:35377145-35377164 Msa0249200:intron 30.0%
AAGAAGAGATGAAATTAGGT+GGG - chr2_2:35377146-35377165 Msa0249200:intron 30.0%
GTTTCTGAATATTTCATTCC+AGG - chr2_2:35377210-35377229 Msa0249200:intron 30.0%
TGAATGAATTGGTCACTATT+GGG - chr2_2:35377288-35377307 Msa0249200:intron 30.0%
! TTGTGAAACACTTTTACACT+TGG + chr2_2:35377435-35377454 None:intergenic 30.0%
! TGTAAATCAGAATTGGTTTC+TGG + chr2_2:35377573-35377592 None:intergenic 30.0%
AGAAACCAATTCTGATTTAC+AGG - chr2_2:35377572-35377591 Msa0249200:intron 30.0%
TGTTACCTGTAAATCAGAAT+TGG + chr2_2:35377580-35377599 None:intergenic 30.0%
ACCCTTATATCTCTATATCT+AGG + chr2_2:35377802-35377821 None:intergenic 30.0%
ACATTCTAGACCAAATGAAT+GGG - chr2_2:35378006-35378025 Msa0249200:intron 30.0%
TAGCAGGATTATAAAGACAA+TGG - chr2_2:35378240-35378259 Msa0249200:intron 30.0%
ATCTCATGTAAATATCTGGA+TGG - chr2_2:35378289-35378308 Msa0249200:intron 30.0%
TCTCATGTAAATATCTGGAT+GGG - chr2_2:35378290-35378309 Msa0249200:intron 30.0%
GGTTAAGCTATCACAATACA+TGG - chr2_2:35374146-35374165 Msa0249200:CDS 35.0%
GCCAACACTTTAAACCAAAA+GGG + chr2_2:35374215-35374234 None:intergenic 35.0%
TGCCAACACTTTAAACCAAA+AGG + chr2_2:35374216-35374235 None:intergenic 35.0%
!!! TTTTGGTTTAAAGTGTTGGC+AGG - chr2_2:35374215-35374234 Msa0249200:CDS 35.0%
!! TTTGGTTTAAAGTGTTGGCA+GGG - chr2_2:35374216-35374235 Msa0249200:CDS 35.0%
AGTTTCAGCAAAAGGTAGAT+GGG + chr2_2:35374248-35374267 None:intergenic 35.0%
AAAAGGTGAGTTTCAGCAAA+AGG + chr2_2:35374256-35374275 None:intergenic 35.0%
!! CCTTTTAATTAGAAGGATGG+GGG - chr2_2:35374270-35374289 Msa0249200:CDS 35.0%
! TTAAAGCCTTTTTGACCAAG+TGG + chr2_2:35374313-35374332 None:intergenic 35.0%
TTGTGATCCAAAAGTCATTG+AGG - chr2_2:35374494-35374513 Msa0249200:intron 35.0%
GCTGCCTATTTAATAGTCAT+CGG - chr2_2:35374621-35374640 Msa0249200:CDS 35.0%
! TCTGGTTAGTTAGTTAGAGT+AGG + chr2_2:35374810-35374829 None:intergenic 35.0%
CTTTATATGCTCATTCCCAT+TGG + chr2_2:35375001-35375020 None:intergenic 35.0%
GGAATGAGCATATAAAGTTG+TGG - chr2_2:35375004-35375023 Msa0249200:intron 35.0%
TGTTCATAGCTTGAACATCA+TGG + chr2_2:35375057-35375076 None:intergenic 35.0%
!! AGAGCAATTAGTTTGTTGGT+TGG - chr2_2:35375122-35375141 Msa0249200:intron 35.0%
! AGTGTGTTGTTATTGTTGCT+AGG - chr2_2:35375168-35375187 Msa0249200:CDS 35.0%
AGCCTCAATGAATAGAAAAG+AGG - chr2_2:35375200-35375219 Msa0249200:CDS 35.0%
GCCTCAATGAATAGAAAAGA+GGG - chr2_2:35375201-35375220 Msa0249200:CDS 35.0%
! TCCCTCTTTTCTATTCATTG+AGG + chr2_2:35375205-35375224 None:intergenic 35.0%
!! ATAAGAGCACTTTCCTTTCA+TGG + chr2_2:35375266-35375285 None:intergenic 35.0%
ATTTGGGCATTCAAAGTGAA+GGG - chr2_2:35375487-35375506 Msa0249200:intron 35.0%
ATACCCTTTGTATGTGTATG+TGG + chr2_2:35375749-35375768 None:intergenic 35.0%
!!! GAAGGTGCTTTTATATAGGA+CGG - chr2_2:35375851-35375870 Msa0249200:intron 35.0%
! AAGAATTTGGCTCCTCTAAA+GGG + chr2_2:35375947-35375966 None:intergenic 35.0%
! AAAGAATTTGGCTCCTCTAA+AGG + chr2_2:35375948-35375967 None:intergenic 35.0%
TCCAATACTGCAAATTGACA+TGG - chr2_2:35376039-35376058 Msa0249200:intron 35.0%
ACCATGTCAATTTGCAGTAT+TGG + chr2_2:35376043-35376062 None:intergenic 35.0%
TACTGCAAATTGACATGGTA+TGG - chr2_2:35376044-35376063 Msa0249200:intron 35.0%
ATTAGATGGTTATCAGATGC+TGG - chr2_2:35376088-35376107 Msa0249200:intron 35.0%
CAGTAGCTTGAGAATTTCAA+AGG + chr2_2:35376258-35376277 None:intergenic 35.0%
!! CTTTGAAATTCTCAAGCTAC+TGG - chr2_2:35376256-35376275 Msa0249200:CDS 35.0%
TGTTTGATCACCACAATAGT+TGG - chr2_2:35376541-35376560 Msa0249200:intron 35.0%
TACTCTCCTATACAATGAAG+TGG - chr2_2:35376802-35376821 Msa0249200:intron 35.0%
AATGCTCCACTTCATTGTAT+AGG + chr2_2:35376811-35376830 None:intergenic 35.0%
GAATCCATGATTGAAACCTA+TGG + chr2_2:35376872-35376891 None:intergenic 35.0%
TGCCTACAATAGAATCATGA+CGG - chr2_2:35376918-35376937 Msa0249200:intron 35.0%
CATGCTCATAACAAGTGATA+AGG + chr2_2:35377004-35377023 None:intergenic 35.0%
!! CTTATCACTTGTTATGAGCA+TGG - chr2_2:35377002-35377021 Msa0249200:intron 35.0%
CGAATGAACAATCAAGATGT+TGG - chr2_2:35377057-35377076 Msa0249200:intron 35.0%
ATGAACAATCAAGATGTTGG+GGG - chr2_2:35377060-35377079 Msa0249200:intron 35.0%
CTGAATGAATTGGTCACTAT+TGG - chr2_2:35377287-35377306 Msa0249200:intron 35.0%
TGTTGTTGTATTGGATGCAT+TGG - chr2_2:35377323-35377342 Msa0249200:intron 35.0%
! AAATGATACTCAGAAGGCAT+TGG - chr2_2:35377533-35377552 Msa0249200:intron 35.0%
TAAAGGTTAAGATCGAGTCA+AGG - chr2_2:35377660-35377679 Msa0249200:intron 35.0%
TTAAGATCGAGTCAAGGAAA+AGG - chr2_2:35377666-35377685 Msa0249200:intron 35.0%
!! TCACTTTTAGCACATTACTG+TGG + chr2_2:35377777-35377796 None:intergenic 35.0%
!!! AATTCAACTGCTGCTTTTGA+TGG - chr2_2:35377939-35377958 Msa0249200:intron 35.0%
GACATTCTAGACCAAATGAA+TGG - chr2_2:35378005-35378024 Msa0249200:intron 35.0%
CATTCTAGACCAAATGAATG+GGG - chr2_2:35378007-35378026 Msa0249200:intron 35.0%
TAAAACAGAAGAAAGGGATG+TGG - chr2_2:35378043-35378062 Msa0249200:intron 35.0%
AGGGATCTCATGTAAATATC+TGG - chr2_2:35378285-35378304 Msa0249200:intron 35.0%
! TTCTTACTCTTTTCGGAATG+TGG - chr2_2:35378511-35378530 Msa0249200:intron 35.0%
GATAGCTTAACCTTTATGGC+TGG + chr2_2:35374138-35374157 None:intergenic 40.0%
!!! GCCCTTTTGGTTTAAAGTGT+TGG - chr2_2:35374211-35374230 Msa0249200:CDS 40.0%
GAGTTTCAGCAAAAGGTAGA+TGG + chr2_2:35374249-35374268 None:intergenic 40.0%
CCCCCATCCTTCTAATTAAA+AGG + chr2_2:35374273-35374292 None:intergenic 40.0%
TTTAATTAGAAGGATGGGGG+TGG - chr2_2:35374273-35374292 Msa0249200:CDS 40.0%
CCTGCAAAGCAAATTACACA+TGG + chr2_2:35374461-35374480 None:intergenic 40.0%
!! CCATGTGTAATTTGCTTTGC+AGG - chr2_2:35374458-35374477 Msa0249200:CDS 40.0%
! CTACTCACCTCAATGACTTT+TGG + chr2_2:35374504-35374523 None:intergenic 40.0%
AAGAATTGGAACAATCGCCT+TGG - chr2_2:35374658-35374677 Msa0249200:intron 40.0%
! TGCAACTCTGCAGAATTTTG+AGG - chr2_2:35374682-35374701 Msa0249200:intron 40.0%
! GCAACTCTGCAGAATTTTGA+GGG - chr2_2:35374683-35374702 Msa0249200:intron 40.0%
!! TGTGTACTTTTTGCTTTCCC+TGG - chr2_2:35375294-35375313 Msa0249200:CDS 40.0%
GAAATGATCCCAACAGAATG+CGG - chr2_2:35375423-35375442 Msa0249200:intron 40.0%
GGAATTAACCGCATTCTGTT+GGG + chr2_2:35375434-35375453 None:intergenic 40.0%
GATTTGGGCATTCAAAGTGA+AGG - chr2_2:35375486-35375505 Msa0249200:intron 40.0%
! GTGCTTTTATATAGGACGGA+GGG - chr2_2:35375855-35375874 Msa0249200:intron 40.0%
! AGAATTTGGCTCCTCTAAAG+GGG + chr2_2:35375946-35375965 None:intergenic 40.0%
!! TATGGTGCTACTTCATGCTA+CGG - chr2_2:35376062-35376081 Msa0249200:intron 40.0%
!! AACAAACTTCGCTTTTGCAG+AGG + chr2_2:35376433-35376452 None:intergenic 40.0%
! TGCAAAAGCGAAGTTTGTTC+AGG - chr2_2:35376434-35376453 Msa0249200:intron 40.0%
! AAAGCGAAGTTTGTTCAGGT+AGG - chr2_2:35376438-35376457 Msa0249200:intron 40.0%
ATACCGAAAAACTGGAGCAT+GGG + chr2_2:35376518-35376537 None:intergenic 40.0%
ATGACTGCTACCAACTATTG+TGG + chr2_2:35376554-35376573 None:intergenic 40.0%
GAAAGAGAAAATGAGGCTGA+AGG + chr2_2:35376717-35376736 None:intergenic 40.0%
! TGGAGCATTAATGCAACAGT+TGG - chr2_2:35376822-35376841 Msa0249200:intron 40.0%
! GGAGATGTTTTCGTGTGATT+AGG - chr2_2:35376843-35376862 Msa0249200:intron 40.0%
! GATGTTTTCGTGTGATTAGG+AGG - chr2_2:35376846-35376865 Msa0249200:intron 40.0%
GCCTACAATAGAATCATGAC+GGG - chr2_2:35376919-35376938 Msa0249200:intron 40.0%
ACCCGTCATGATTCTATTGT+AGG + chr2_2:35376923-35376942 None:intergenic 40.0%
!! TGCCATTGATTTCCTTGTTG+AGG - chr2_2:35377083-35377102 Msa0249200:intron 40.0%
CTCCTCAACAAGGAAATCAA+TGG + chr2_2:35377088-35377107 None:intergenic 40.0%
TGATTTCCTTGTTGAGGAGA+AGG - chr2_2:35377089-35377108 Msa0249200:intron 40.0%
TCTGGAGAGACTGAATGAAT+TGG - chr2_2:35377277-35377296 Msa0249200:intron 40.0%
GCAAGATGTACGAAGTTTGA+TGG + chr2_2:35377469-35377488 None:intergenic 40.0%
TCAAACTTCGTACATCTTGC+AGG - chr2_2:35377469-35377488 Msa0249200:intron 40.0%
TACATCTTGCAGGTTTGAGA+AGG - chr2_2:35377479-35377498 Msa0249200:intron 40.0%
!!! ATGGGTTTTGAAAGATCGAG+AGG - chr2_2:35377737-35377756 Msa0249200:intron 40.0%
GATATACTTCTTCTCTGCAG+TGG - chr2_2:35377827-35377846 Msa0249200:CDS 40.0%
GCAGCAGTTGAATTCATTTG+AGG + chr2_2:35377933-35377952 None:intergenic 40.0%
!!! ACTGCTGCTTTTGATGGTAT+TGG - chr2_2:35377945-35377964 Msa0249200:intron 40.0%
GATCTTCAACCCCATTCATT+TGG + chr2_2:35378019-35378038 None:intergenic 40.0%
CTCTCTGCAGATATAGCTAA+AGG - chr2_2:35378080-35378099 Msa0249200:intron 40.0%
CATTGACAGGTACTCAGTTA+TGG + chr2_2:35378153-35378172 None:intergenic 40.0%
CATAACTGAGTACCTGTCAA+TGG - chr2_2:35378151-35378170 Msa0249200:intron 40.0%
TACATTTGTGCTCATTCCCT+AGG - chr2_2:35378313-35378332 Msa0249200:intron 40.0%
ACATTTGTGCTCATTCCCTA+GGG - chr2_2:35378314-35378333 Msa0249200:intron 40.0%
GCTGAGACTGTTCTCAAATT+AGG - chr2_2:35378467-35378486 Msa0249200:intron 40.0%
GAGACTGTTCTCAAATTAGG+TGG - chr2_2:35378470-35378489 Msa0249200:intron 40.0%
! TCTTTTCGGAATGTGGTAAC+TGG - chr2_2:35378518-35378537 Msa0249200:intron 40.0%
CTCAAACATGTCCTCTCATG+AGG - chr2_2:35374187-35374206 Msa0249200:CDS 45.0%
ATTCTGCAGAGTTGCAACCA+AGG + chr2_2:35374678-35374697 None:intergenic 45.0%
! ACTGGTTAGTCCACCATGAA+AGG - chr2_2:35375250-35375269 Msa0249200:CDS 45.0%
! AGAGCACTTTCCTTTCATGG+TGG + chr2_2:35375263-35375282 None:intergenic 45.0%
AACTGTACCATGCAAGACCA+GGG + chr2_2:35375314-35375333 None:intergenic 45.0%
AAACTGTACCATGCAAGACC+AGG + chr2_2:35375315-35375334 None:intergenic 45.0%
GGGAATTAACCGCATTCTGT+TGG + chr2_2:35375435-35375454 None:intergenic 45.0%
GAATGCGGTTAATTCCCCAT+TGG - chr2_2:35375438-35375457 Msa0249200:intron 45.0%
GTGAAGGGTTCACTATAGAG+TGG - chr2_2:35375502-35375521 Msa0249200:intron 45.0%
AGAGGGAGTAATGAACTACG+AGG + chr2_2:35375577-35375596 None:intergenic 45.0%
! GGTGCTTTTATATAGGACGG+AGG - chr2_2:35375854-35375873 Msa0249200:intron 45.0%
! AATTTGGCTCCTCTAAAGGG+GGG + chr2_2:35375944-35375963 None:intergenic 45.0%
! GAATTTGGCTCCTCTAAAGG+GGG + chr2_2:35375945-35375964 None:intergenic 45.0%
!! ATGGTGCTACTTCATGCTAC+GGG - chr2_2:35376063-35376082 Msa0249200:intron 45.0%
TCATGCTACGGGACATTAGA+TGG - chr2_2:35376074-35376093 Msa0249200:intron 45.0%
! AAAGCGCCTTGAAATGGCTA+GGG - chr2_2:35376111-35376130 Msa0249200:intron 45.0%
CAGGAATTGAACGTGCTCAT+GGG - chr2_2:35376134-35376153 Msa0249200:CDS 45.0%
AATTGAACGTGCTCATGGGA+AGG - chr2_2:35376138-35376157 Msa0249200:CDS 45.0%
ATAACTCACAGTGCAACCTC+TGG + chr2_2:35376202-35376221 None:intergenic 45.0%
TTGAGACTAGAGCTGCTTGA+AGG - chr2_2:35376357-35376376 Msa0249200:intron 45.0%
TGAGACTAGAGCTGCTTGAA+GGG - chr2_2:35376358-35376377 Msa0249200:intron 45.0%
CTTGCCTTGATTTCTCCAAC+TGG + chr2_2:35376404-35376423 None:intergenic 45.0%
! CTTCCCATGCTCCAGTTTTT+CGG - chr2_2:35376512-35376531 Msa0249200:intron 45.0%
GATACCGAAAAACTGGAGCA+TGG + chr2_2:35376519-35376538 None:intergenic 45.0%
GAGGCCATAGGTTTCAATCA+TGG - chr2_2:35376865-35376884 Msa0249200:intron 45.0%
ACAAGTGATAAGGCCTCATC+TGG + chr2_2:35376994-35377013 None:intergenic 45.0%
TCTTTGCCTTCTCCTCAACA+AGG + chr2_2:35377098-35377117 None:intergenic 45.0%
TTCATTCCAGGGAGCAAAAG+CGG - chr2_2:35377222-35377241 Msa0249200:intron 45.0%
AGATCCACGGCCTTCTTTAA+GGG + chr2_2:35377260-35377279 None:intergenic 45.0%
ATTCAGTCTCTCCAGATCCA+CGG + chr2_2:35377273-35377292 None:intergenic 45.0%
AGAAGAAAGGGATGTGGAGA+TGG - chr2_2:35378049-35378068 Msa0249200:intron 45.0%
! TGTTTCTGCTCTTTGACGCA+GGG - chr2_2:35378266-35378285 Msa0249200:intron 45.0%
!! TTATAACTAAAATAAATAAT+TGG + chr2_2:35374575-35374594 None:intergenic 5.0%
!! TATATTGTATATAATATAAA+AGG + chr2_2:35376690-35376709 None:intergenic 5.0%
AGGGGTCCACTTGGTCAAAA+AGG - chr2_2:35374304-35374323 Msa0249200:CDS 50.0%
TATTGCCGCCTTCAGTTGAG+GGG + chr2_2:35374723-35374742 None:intergenic 50.0%
GTATTGCCGCCTTCAGTTGA+GGG + chr2_2:35374724-35374743 None:intergenic 50.0%
AGTATTGCCGCCTTCAGTTG+AGG + chr2_2:35374725-35374744 None:intergenic 50.0%
!!! TTTTTTAGGTGAGGGCTGCG+CGG + chr2_2:35374971-35374990 None:intergenic 50.0%
!! TTGCTTTCCCTGGTCTTGCA+TGG - chr2_2:35375304-35375323 Msa0249200:CDS 50.0%
CTAAGTGTTCCCCCCTTTAG+AGG - chr2_2:35375932-35375951 Msa0249200:CDS 50.0%
!! TGCTGGAAAGCGCCTTGAAA+TGG - chr2_2:35376105-35376124 Msa0249200:intron 50.0%
!! GAAAGCGCCTTGAAATGGCT+AGG - chr2_2:35376110-35376129 Msa0249200:intron 50.0%
TTCCTGCCCTAGCCATTTCA+AGG + chr2_2:35376120-35376139 None:intergenic 50.0%
GCAGGAATTGAACGTGCTCA+TGG - chr2_2:35376133-35376152 Msa0249200:CDS 50.0%
CACCTTGTAAGAGTCTGAGG+CGG + chr2_2:35376171-35376190 None:intergenic 50.0%
GACCACCTTGTAAGAGTCTG+AGG + chr2_2:35376174-35376193 None:intergenic 50.0%
ACAAGGTGGTCGTTATCCAG+AGG - chr2_2:35376183-35376202 Msa0249200:CDS 50.0%
GAGACTAGAGCTGCTTGAAG+GGG - chr2_2:35376359-35376378 Msa0249200:intron 50.0%
GGCATTTCATTCTGGCCAGT+TGG - chr2_2:35376386-35376405 Msa0249200:intron 50.0%
CTGGCCAGTTGGAGAAATCA+AGG - chr2_2:35376397-35376416 Msa0249200:intron 50.0%
TCGTGTGATTAGGAGGCCAT+AGG - chr2_2:35376853-35376872 Msa0249200:intron 50.0%
! TGAGCATGGGCTACACTCAA+AGG - chr2_2:35377016-35377035 Msa0249200:intron 50.0%
! GAGCATGGGCTACACTCAAA+GGG - chr2_2:35377017-35377036 Msa0249200:intron 50.0%
! ATCCACGGCCTTCTTTAAGG+GGG + chr2_2:35377258-35377277 None:intergenic 50.0%
GATCCACGGCCTTCTTTAAG+GGG + chr2_2:35377259-35377278 None:intergenic 50.0%
CAGATCCACGGCCTTCTTTA+AGG + chr2_2:35377261-35377280 None:intergenic 50.0%
CTTAAAGAAGGCCGTGGATC+TGG - chr2_2:35377259-35377278 Msa0249200:intron 50.0%
AAGACTGACAGCACAACCTG+AGG - chr2_2:35377893-35377912 Msa0249200:intron 50.0%
AGAAAGGGATGTGGAGATGG+AGG - chr2_2:35378052-35378071 Msa0249200:intron 50.0%
CTGCAGACTCAACCATTGAC+AGG + chr2_2:35378166-35378185 None:intergenic 50.0%
CTGTCAATGGTTGAGTCTGC+AGG - chr2_2:35378164-35378183 Msa0249200:intron 50.0%
! GTGTTTCTGCTCTTTGACGC+AGG - chr2_2:35378265-35378284 Msa0249200:intron 50.0%
TCGGAATGTGGTAACTGGTG+TGG - chr2_2:35378523-35378542 Msa0249200:intron 50.0%
TAGGGTACACGTACACGCCA+AGG - chr2_2:35373958-35373977 Msa0249200:three_prime_UTR 55.0%
CCAAAAGGGCTCCTCATGAG+AGG + chr2_2:35374201-35374220 None:intergenic 55.0%
! CCTCTCATGAGGAGCCCTTT+TGG - chr2_2:35374198-35374217 Msa0249200:CDS 55.0%
CCTTCAGTTGAGGGGTTTGG+AGG + chr2_2:35374715-35374734 None:intergenic 55.0%
CCTCCAAACCCCTCAACTGA+AGG - chr2_2:35374712-35374731 Msa0249200:intron 55.0%
CCAAACCCCTCAACTGAAGG+CGG - chr2_2:35374715-35374734 Msa0249200:intron 55.0%
CTCCGCCTCAGACTCTTACA+AGG - chr2_2:35376166-35376185 Msa0249200:CDS 55.0%
CGCCTCAGACTCTTACAAGG+TGG - chr2_2:35376169-35376188 Msa0249200:CDS 55.0%
ACTAGAGCTGCTTGAAGGGG+TGG - chr2_2:35376362-35376381 Msa0249200:intron 55.0%
! GGGGTGGTGGCATTTCATTC+TGG - chr2_2:35376378-35376397 Msa0249200:intron 55.0%
ACAGCTGCAAGTGCCAGATG+AGG - chr2_2:35376978-35376997 Msa0249200:intron 55.0%
TCCAGGGAGCAAAAGCGGTA+TGG - chr2_2:35377227-35377246 Msa0249200:intron 55.0%
CCAGGGAGCAAAAGCGGTAT+GGG - chr2_2:35377228-35377247 Msa0249200:intron 55.0%
CAGGGAGCAAAAGCGGTATG+GGG - chr2_2:35377229-35377248 Msa0249200:intron 55.0%
TGGGGTGACCCCCTTAAAGA+AGG - chr2_2:35377247-35377266 Msa0249200:intron 55.0%
!!! TGCAGTGGTCGCTGCTTTTG+AGG - chr2_2:35377842-35377861 Msa0249200:intron 55.0%
!!! GTGGTCGCTGCTTTTGAGGA+AGG - chr2_2:35377846-35377865 Msa0249200:intron 55.0%
!!! GTCGCTGCTTTTGAGGAAGG+CGG - chr2_2:35377849-35377868 Msa0249200:intron 55.0%
ACTGACAGCACAACCTGAGG+CGG - chr2_2:35377896-35377915 Msa0249200:intron 55.0%
GGTTGCATATTCTCCGCCTC+AGG + chr2_2:35377912-35377931 None:intergenic 55.0%
TAGAAGGATGGGGGTGGCAG+TGG - chr2_2:35374279-35374298 Msa0249200:CDS 60.0%
CCGCCTTCAGTTGAGGGGTT+TGG + chr2_2:35374718-35374737 None:intergenic 60.0%
CGCCTTGAAATGGCTAGGGC+AGG - chr2_2:35376115-35376134 Msa0249200:intron 60.0%
AGAGCTGCTTGAAGGGGTGG+TGG - chr2_2:35376365-35376384 Msa0249200:intron 60.0%
!! CCCATACCGCTTTTGCTCCC+TGG + chr2_2:35377231-35377250 None:intergenic 60.0%
GACCCCCTTAAAGAAGGCCG+TGG - chr2_2:35377253-35377272 Msa0249200:intron 60.0%
GATGGGGGTGGCAGTGGCAA+GGG - chr2_2:35374285-35374304 Msa0249200:CDS 65.0%
ATGGGGGTGGCAGTGGCAAG+GGG - chr2_2:35374286-35374305 Msa0249200:CDS 65.0%
GCAGTGGCAAGGGGTCCACT+TGG - chr2_2:35374295-35374314 Msa0249200:CDS 65.0%
GGATGGGGGTGGCAGTGGCA+AGG - chr2_2:35374284-35374303 Msa0249200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 35373769 35378560 35373769 ID=Msa0249200;Name=Msa0249200
chr2_2 mRNA 35373769 35378560 35373769 ID=Msa0249200-mRNA-1;Parent=Msa0249200;Name=Msa0249200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.87|0.77|0.88|1|1|9|358|382
chr2_2 exon 35373769 35374482 35373769 ID=Msa0249200-mRNA-1:exon:11455;Parent=Msa0249200-mRNA-1
chr2_2 exon 35374571 35374664 35374571 ID=Msa0249200-mRNA-1:exon:11454;Parent=Msa0249200-mRNA-1
chr2_2 exon 35374736 35374838 35374736 ID=Msa0249200-mRNA-1:exon:11453;Parent=Msa0249200-mRNA-1
chr2_2 exon 35375020 35375097 35375020 ID=Msa0249200-mRNA-1:exon:11452;Parent=Msa0249200-mRNA-1
chr2_2 exon 35375166 35375347 35375166 ID=Msa0249200-mRNA-1:exon:11451;Parent=Msa0249200-mRNA-1
chr2_2 exon 35375874 35375976 35375874 ID=Msa0249200-mRNA-1:exon:11450;Parent=Msa0249200-mRNA-1
chr2_2 exon 35376117 35376304 35376117 ID=Msa0249200-mRNA-1:exon:11449;Parent=Msa0249200-mRNA-1
chr2_2 exon 35377814 35377849 35377814 ID=Msa0249200-mRNA-1:exon:11448;Parent=Msa0249200-mRNA-1
chr2_2 exon 35378552 35378560 35378552 ID=Msa0249200-mRNA-1:exon:11447;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35378552 35378560 35378552 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35377814 35377849 35377814 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35376117 35376304 35376117 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35375874 35375976 35375874 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35375166 35375347 35375166 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35375020 35375097 35375020 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35374736 35374838 35374736 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35374571 35374664 35374571 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 CDS 35374127 35374482 35374127 ID=Msa0249200-mRNA-1:cds;Parent=Msa0249200-mRNA-1
chr2_2 three_prime_UTR 35373769 35374126 35373769 ID=Msa0249200-mRNA-1:three_prime_utr;Parent=Msa0249200-mRNA-1
Gene Sequence

>Msa0249200

ATGGGAGAGGAGTCATTCTCTATTTGTGATCCAAAAGTCATTGAGCTTATTGACAATGTTCCAATACTGCAAATTGACATGGTATGGTGCTACTTCATGCTACGGGACATTAGATGGTTATCAGATGCTGGAAAGCGCCTTGAAATGGCTAGGGCAGGAATTGAACGTGCTCATGGGAAGGATTCTCTCCGCCTCAGACTCTTACAAGGTGGTCGTTATCCAGAGGTTGCACTGCATTTGAGACTAGAGCTGCTTGAAGGGGTGGTGGCATTTCATTCTGGCCAGTTGGAGAAATCAAGGCAAGCATTAGCCTCTGCAAAAGCGAAGTTTGTTCAGCTGCAAGTGCCAGATGAGGCCTTATCACTTGTTATGAGCATGGGCTACACTCAAAGGGATGCAAAGAGAGCACTGCGAATGAACAATCAAGATGTTGGGGGTGCCATTGATTTCCTTGTTGAGGAGAAGGCAAAGAAAAAGCAAAAAGATGAGGAAGATTTAAAAAGAAGAGATGAAATTAGGGAGCAAAAGCGGTATGGGGTGACCCCCTTAAAGAAGGCCGTGGATCTGGAGAGACTGAATGAATTGGTCACTATTGGGTTTGAGAAGGAGCTTGCTGCTGAAGCCCTTAGAAGAAATGAAAATGATACTCAGAAGGCATTGGATGATTTGACGAATCCAGAAACCAATTCTGATTTACAGGTTAAGATCGAGTCAAGGAAAAGGAAAAGACAGCAACAAGCAAAAGATTCTGCAATTGAAAAAGTTGTGCAAATGGGTTTTGAAAGATCGAGAGTGGTCGCTGCTTTTGAGGAAGGCGGCAATTTAGAAGAAGTATTGCAAAGACTGACAGCACAACCTGAGGCGGAGAATATGCAACCTCAAATGAATTCAACTGCTGCTTTTGATGGTATTGGAAGTTCATCTAACCCTTTACCAGAAAATGTTAATTCTGACATTCTAGACCAAATGAATGGGGTTGAAGATCACAATAAAACAGAAGAAAGGGATGTGGAGATGGAGGATGAGCTCTCTGCAGATATAGCTAAAGGAGATGCCTTTACTGATTATGACATTGAAGTTAATATTGAAGGGGAAGCCATAACTGAGTACCTGTCAATGGTTGAGTCTGCAGGCATTGCTTCCAAATAA

Protein sequence

>Msa0249200

MGEESFSICDPKVIELIDNVPILQIDMVWCYFMLRDIRWLSDAGKRLEMARAGIERAHGKDSLRLRLLQGGRYPEVALHLRLELLEGVVAFHSGQLEKSRQALASAKAKFVQLQVPDEALSLVMSMGYTQRDAKRALRMNNQDVGGAIDFLVEEKAKKKQKDEEDLKRRDEIREQKRYGVTPLKKAVDLERLNELVTIGFEKELAAEALRRNENDTQKALDDLTNPETNSDLQVKIESRKRKRQQQAKDSAIEKVVQMGFERSRVVAAFEEGGNLEEVLQRLTAQPEAENMQPQMNSTAAFDGIGSSSNPLPENVNSDILDQMNGVEDHNKTEERDVEMEDELSADIAKGDAFTDYDIEVNIEGEAITEYLSMVESAGIASK*