Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422360 | G7KCZ3 | 81.046 | 306 | 24 | 1 | 21 | 292 | 93 | 398 | 2.93e-161 | 474 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002560 | Msa1422360 | 0.807197 | 5.686559e-50 | -8.615850e-47 |
Msa0026910 | Msa1422360 | 0.803922 | 2.765887e-49 | -8.615850e-47 |
Msa0031180 | Msa1422360 | 0.828742 | 7.593234e-55 | -8.615850e-47 |
Msa0036140 | Msa1422360 | 0.804846 | 1.775397e-49 | -8.615850e-47 |
Msa0037120 | Msa1422360 | 0.806062 | 9.872344e-50 | -8.615850e-47 |
Msa0054820 | Msa1422360 | 0.817802 | 2.729127e-52 | -8.615850e-47 |
Msa0055660 | Msa1422360 | 0.810856 | 9.361259e-51 | -8.615850e-47 |
Msa0061340 | Msa1422360 | 0.821675 | 3.558933e-53 | -8.615850e-47 |
Msa0078480 | Msa1422360 | 0.812265 | 4.625405e-51 | -8.615850e-47 |
Msa0084080 | Msa1422360 | 0.807829 | 4.174922e-50 | -8.615850e-47 |
Msa0096580 | Msa1422360 | 0.821695 | 3.520869e-53 | -8.615850e-47 |
Msa0100160 | Msa1422360 | 0.810130 | 1.343045e-50 | -8.615850e-47 |
Msa1361410 | Msa1422360 | 0.801512 | 8.696199e-49 | -8.615850e-47 |
Msa1402270 | Msa1422360 | 0.802048 | 6.749133e-49 | -8.615850e-47 |
Msa1422360 | Msa1424450 | 0.806635 | 7.473803e-50 | -8.615850e-47 |
Msa1422360 | Msa1448490 | 0.815530 | 8.817416e-52 | -8.615850e-47 |
Msa1422360 | Msa1450720 | 0.802418 | 5.664746e-49 | -8.615850e-47 |
Msa1422360 | Msa1459180 | 0.802293 | 6.009487e-49 | -8.615850e-47 |
Msa1422360 | Msa1460020 | 0.806334 | 8.649761e-50 | -8.615850e-47 |
Msa1422360 | Msa1462930 | 0.816012 | 6.885949e-52 | -8.615850e-47 |
Msa0651270 | Msa1422360 | 0.810329 | 1.216567e-50 | -8.615850e-47 |
Msa0652690 | Msa1422360 | 0.804261 | 2.352130e-49 | -8.615850e-47 |
Msa0667050 | Msa1422360 | 0.804170 | 2.456864e-49 | -8.615850e-47 |
Msa0685750 | Msa1422360 | 0.811335 | 7.372000e-51 | -8.615850e-47 |
Msa0687840 | Msa1422360 | 0.803160 | 3.979986e-49 | -8.615850e-47 |
Msa0688070 | Msa1422360 | 0.800169 | 1.634554e-48 | -8.615850e-47 |
Msa0691380 | Msa1422360 | 0.801236 | 9.903377e-49 | -8.615850e-47 |
Msa0693380 | Msa1422360 | 0.803819 | 2.905960e-49 | -8.615850e-47 |
Msa0704920 | Msa1422360 | 0.813533 | 2.438936e-51 | -8.615850e-47 |
Msa0711790 | Msa1422360 | 0.813714 | 2.225240e-51 | -8.615850e-47 |
Msa0740510 | Msa1422360 | 0.804806 | 1.810223e-49 | -8.615850e-47 |
Msa0756530 | Msa1422360 | 0.810528 | 1.102201e-50 | -8.615850e-47 |
Msa0763890 | Msa1422360 | 0.813873 | 2.053258e-51 | -8.615850e-47 |
Msa0763920 | Msa1422360 | 0.804907 | 1.724384e-49 | -8.615850e-47 |
Msa0767220 | Msa1422360 | 0.813567 | 2.398330e-51 | -8.615850e-47 |
Msa0787150 | Msa1422360 | 0.805730 | 1.159315e-49 | -8.615850e-47 |
Msa0820770 | Msa1422360 | 0.800779 | 1.227928e-48 | -8.615850e-47 |
Msa0821800 | Msa1422360 | 0.804725 | 1.881938e-49 | -8.615850e-47 |
Msa0830530 | Msa1422360 | 0.803873 | 2.831417e-49 | -8.615850e-47 |
Msa0832090 | Msa1422360 | 0.809508 | 1.828203e-50 | -8.615850e-47 |
Msa0133720 | Msa1422360 | 0.811815 | 5.795458e-51 | -8.615850e-47 |
Msa0133820 | Msa1422360 | 0.807380 | 5.198921e-50 | -8.615850e-47 |
Msa0138210 | Msa1422360 | 0.805153 | 1.531619e-49 | -8.615850e-47 |
Msa0142480 | Msa1422360 | 0.809423 | 1.905922e-50 | -8.615850e-47 |
Msa0143850 | Msa1422360 | 0.810130 | 1.343045e-50 | -8.615850e-47 |
Msa0152400 | Msa1422360 | 0.832186 | 1.091110e-55 | -8.615850e-47 |
Msa0159770 | Msa1422360 | 0.803177 | 3.947091e-49 | -8.615850e-47 |
Msa0166870 | Msa1422360 | 0.802649 | 5.076406e-49 | -8.615850e-47 |
Msa0171120 | Msa1422360 | 0.810451 | 1.145324e-50 | -8.615850e-47 |
Msa0198700 | Msa1422360 | 0.821642 | 3.622753e-53 | -8.615850e-47 |
Msa0212990 | Msa1422360 | 0.803927 | 2.759212e-49 | -8.615850e-47 |
Msa0237200 | Msa1422360 | 0.809052 | 2.289109e-50 | -8.615850e-47 |
Msa1230040 | Msa1422360 | 0.801442 | 8.987790e-49 | -8.615850e-47 |
Msa1303240 | Msa1422360 | 0.807477 | 4.958391e-50 | -8.615850e-47 |
Msa1306390 | Msa1422360 | 0.800966 | 1.124525e-48 | -8.615850e-47 |
Msa1328640 | Msa1422360 | 0.803058 | 4.179104e-49 | -8.615850e-47 |
Msa1331000 | Msa1422360 | 0.804059 | 2.591145e-49 | -8.615850e-47 |
Msa1333680 | Msa1422360 | 0.803349 | 3.636935e-49 | -8.615850e-47 |
Msa1333730 | Msa1422360 | 0.813533 | 2.438936e-51 | -8.615850e-47 |
Msa0376020 | Msa1422360 | 0.812522 | 4.063509e-51 | -8.615850e-47 |
Msa0376350 | Msa1422360 | 0.803838 | 2.880091e-49 | -8.615850e-47 |
Msa0410840 | Msa1422360 | 0.811881 | 5.608030e-51 | -8.615850e-47 |
Msa0443880 | Msa1422360 | 0.816131 | 6.476519e-52 | -8.615850e-47 |
Msa0480780 | Msa1422360 | 0.803137 | 4.023785e-49 | -8.615850e-47 |
Msa0997970 | Msa1422360 | 0.809227 | 2.100411e-50 | -8.615850e-47 |
Msa1010070 | Msa1422360 | 0.815182 | 1.053857e-51 | -8.615850e-47 |
Msa1056460 | Msa1422360 | 0.801466 | 8.886665e-49 | -8.615850e-47 |
Msa1082500 | Msa1422360 | 0.800866 | 1.178868e-48 | -8.615850e-47 |
Msa1087980 | Msa1422360 | 0.808316 | 3.288850e-50 | -8.615850e-47 |
Msa1102770 | Msa1422360 | 0.812866 | 3.417373e-51 | -8.615850e-47 |
Msa0249100 | Msa1422360 | 0.811492 | 6.813563e-51 | -8.615850e-47 |
Msa0259500 | Msa1422360 | 0.807887 | 4.058477e-50 | -8.615850e-47 |
Msa0264780 | Msa1422360 | 0.803333 | 3.665510e-49 | -8.615850e-47 |
Msa0274970 | Msa1422360 | 0.809840 | 1.550973e-50 | -8.615850e-47 |
Msa0287650 | Msa1422360 | 0.810756 | 9.840289e-51 | -8.615850e-47 |
Msa0315680 | Msa1422360 | 0.806403 | 8.368272e-50 | -8.615850e-47 |
Msa0317730 | Msa1422360 | 0.804050 | 2.602133e-49 | -8.615850e-47 |
Msa0318880 | Msa1422360 | 0.806563 | 7.741429e-50 | -8.615850e-47 |
Msa0320800 | Msa1422360 | 0.800866 | 1.178665e-48 | -8.615850e-47 |
Msa0347950 | Msa1422360 | 0.809356 | 1.969994e-50 | -8.615850e-47 |
Msa0347990 | Msa1422360 | 0.804252 | 2.362116e-49 | -8.615850e-47 |
Msa0351380 | Msa1422360 | 0.808807 | 2.582661e-50 | -8.615850e-47 |
Msa1108160 | Msa1422360 | 0.802366 | 5.805528e-49 | -8.615850e-47 |
Msa1174850 | Msa1422360 | 0.827526 | 1.490273e-54 | -8.615850e-47 |
Msa1197060 | Msa1422360 | 0.809326 | 1.999692e-50 | -8.615850e-47 |
Msa1199570 | Msa1422360 | 0.805166 | 1.522330e-49 | -8.615850e-47 |
Msa1205370 | Msa1422360 | 0.809024 | 2.321096e-50 | -8.615850e-47 |
Msa1211340 | Msa1422360 | 0.800077 | 1.706622e-48 | -8.615850e-47 |
Msa1221060 | Msa1422360 | 0.804137 | 2.496158e-49 | -8.615850e-47 |
Msa1224480 | Msa1422360 | 0.800128 | 1.666752e-48 | -8.615850e-47 |
Msa0484780 | Msa1422360 | 0.821395 | 4.130742e-53 | -8.615850e-47 |
Msa0506830 | Msa1422360 | 0.800582 | 1.346799e-48 | -8.615850e-47 |
Msa0512870 | Msa1422360 | 0.815295 | 9.945460e-52 | -8.615850e-47 |
Msa0516020 | Msa1422360 | 0.813644 | 2.305480e-51 | -8.615850e-47 |
Msa0516170 | Msa1422360 | 0.804498 | 2.099003e-49 | -8.615850e-47 |
Msa0572480 | Msa1422360 | 0.803299 | 3.725569e-49 | -8.615850e-47 |
Msa0576680 | Msa1422360 | 0.802839 | 4.636736e-49 | -8.615850e-47 |
Msa0861090 | Msa1422360 | 0.803708 | 3.064797e-49 | -8.615850e-47 |
Msa0861830 | Msa1422360 | 0.802854 | 4.603455e-49 | -8.615850e-47 |
Msa0861930 | Msa1422360 | 0.823907 | 1.075905e-53 | -8.615850e-47 |
Msa0900620 | Msa1422360 | 0.807837 | 4.159472e-50 | -8.615850e-47 |
Msa0906690 | Msa1422360 | 0.809017 | 2.329347e-50 | -8.615850e-47 |
Msa0933230 | Msa1422360 | 0.803709 | 3.062957e-49 | -8.615850e-47 |
Msa0975940 | Msa1422360 | 0.815875 | 7.388368e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422360 | MtrunA17_Chr5g0442241 | 81.046 | 306 | 24 | 1 | 21 | 292 | 93 | 398 | 5.65e-165 | 474 |
Msa1422360 | MtrunA17_Chr7g0233411 | 69.820 | 222 | 33 | 1 | 105 | 292 | 2 | 223 | 3.96e-102 | 299 |
Msa1422360 | MtrunA17_Chr5g0442271 | 89.922 | 129 | 13 | 0 | 164 | 292 | 1 | 129 | 1.18e-77 | 233 |
Msa1422360 | MtrunA17_Chr2g0292951 | 37.658 | 316 | 135 | 10 | 23 | 278 | 97 | 410 | 2.86e-33 | 125 |
Msa1422360 | MtrunA17_Chr5g0442261 | 83.636 | 55 | 9 | 0 | 32 | 86 | 16 | 70 | 2.02e-24 | 94.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 57 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTAGATTGAAGGAGCTTT+TGG | 0.189291 | tig0025360:-60092 | Msa1422360:CDS |
TGGAGAAGGCTGAGGGGTAT+AGG | 0.242967 | tig0025360:-59964 | Msa1422360:CDS |
CCATTTCAGTTTGATTTCTC+AGG | 0.311924 | tig0025360:+59592 | None:intergenic |
TGCCGAAACTTGGAAGTTAC+TGG | 0.318427 | tig0025360:-60029 | Msa1422360:CDS |
TTCCAGTAACTTCCAAGTTT+CGG | 0.329335 | tig0025360:+60027 | None:intergenic |
GATTGTTACTTCTGCTCATC+GGG | 0.347256 | tig0025360:-60191 | Msa1422360:CDS |
CTGCTCATCGGGGATGCAAC+GGG | 0.348667 | tig0025360:-60180 | Msa1422360:CDS |
AGGCACTTGCACAAGATAAC+TGG | 0.361371 | tig0025360:-59722 | Msa1422360:CDS |
ATCGGGGATGCAACGGGGAT+GGG | 0.362558 | tig0025360:-60174 | Msa1422360:CDS |
TCGGGGATGCAACGGGGATG+GGG | 0.364245 | tig0025360:-60173 | Msa1422360:CDS |
GACGAGAATGAGAAGGTATT+AGG | 0.370192 | tig0025360:-60151 | Msa1422360:CDS |
TTCGCAGCAAGTGTTAATAA+TGG | 0.380922 | tig0025360:+60725 | None:intergenic |
TCGCAGCAAGTGTTAATAAT+GGG | 0.386484 | tig0025360:+60726 | None:intergenic |
TAGGGTTCAGATTGGTCAAT+TGG | 0.393981 | tig0025360:-59945 | Msa1422360:CDS |
GGAGAAGGCTGAGGGGTATA+GGG | 0.396621 | tig0025360:-59963 | Msa1422360:CDS |
GGAAGAAAGTTGCCGAAACT+TGG | 0.407982 | tig0025360:-60039 | Msa1422360:CDS |
ACTGGAACAAGAAAAGAATA+AGG | 0.414135 | tig0025360:-60011 | Msa1422360:CDS |
AAATTAGGTTGTCTAAAGAT+TGG | 0.418099 | tig0025360:-59423 | Msa1422360:CDS |
CATCGGGGATGCAACGGGGA+TGG | 0.424317 | tig0025360:-60175 | Msa1422360:CDS |
TATTAACACTTGCTGCGAAC+AGG | 0.428860 | tig0025360:-60721 | Msa1422360:intron |
CTTGTATAGCTGAGAGGGAC+AGG | 0.429483 | tig0025360:-60120 | Msa1422360:CDS |
CAGTGAAACCAACCTTTGCT+TGG | 0.435279 | tig0025360:+59328 | None:intergenic |
AGCAGCTAGCAGAAGATAAG+AGG | 0.445083 | tig0025360:-59656 | Msa1422360:CDS |
CTCGTCGGACATGGCAGTGC+CGG | 0.445452 | tig0025360:-60772 | None:intergenic |
CCTGAGAAATCAAACTGAAA+TGG | 0.447150 | tig0025360:-59592 | Msa1422360:CDS |
TCTACGTCACTTTGATGTAC+TGG | 0.457048 | tig0025360:-59388 | Msa1422360:CDS |
AGATTGTTACTTCTGCTCAT+CGG | 0.461787 | tig0025360:-60192 | Msa1422360:CDS |
TAAAGCGGCGGCCAGACGGC+AGG | 0.494382 | tig0025360:-59870 | Msa1422360:CDS |
CATTTCAGTTTGATTTCTCA+GGG | 0.502026 | tig0025360:+59593 | None:intergenic |
CGTTTAAAGCGGCGGCCAGA+CGG | 0.512034 | tig0025360:-59874 | Msa1422360:CDS |
AGATAACTGGAACAAGTTTG+TGG | 0.518705 | tig0025360:-59709 | Msa1422360:CDS |
CAGGGAAATCTGTAGATTGA+AGG | 0.527681 | tig0025360:-60101 | Msa1422360:CDS |
GGACATGGCAGTGCCGGTGG+CGG | 0.536280 | tig0025360:-60766 | Msa1422360:exon |
TTTGCGAATCTCGTCGGACA+TGG | 0.543542 | tig0025360:-60781 | None:intergenic |
GGTTAAATTAGAGGAGCAGA+AGG | 0.543577 | tig0025360:-59742 | Msa1422360:intron |
AGAGAAGGGCTGATTCTAAG+AGG | 0.557315 | tig0025360:-60060 | Msa1422360:CDS |
TCTGCTCATCGGGGATGCAA+CGG | 0.558030 | tig0025360:-60181 | Msa1422360:CDS |
ATTAAAGTGGAGAAGGCTGA+GGG | 0.564267 | tig0025360:-59971 | Msa1422360:CDS |
GTCGGACATGGCAGTGCCGG+TGG | 0.571110 | tig0025360:-60769 | Msa1422360:exon |
AGAAGATAAGAGGACAATTG+AGG | 0.575896 | tig0025360:-59646 | Msa1422360:CDS |
TTTGGAGAGTGAAAAGAGAA+GGG | 0.578977 | tig0025360:-60074 | Msa1422360:CDS |
ACACAAGACCAAGCAAAGGT+TGG | 0.582289 | tig0025360:-59336 | Msa1422360:CDS |
GAGGGGTATAGGGTTCAGAT+TGG | 0.592717 | tig0025360:-59953 | Msa1422360:CDS |
AATTAAAGTGGAGAAGGCTG+AGG | 0.598799 | tig0025360:-59972 | Msa1422360:CDS |
GACGTCTGCGTTTAAAGCGG+CGG | 0.599519 | tig0025360:-59882 | Msa1422360:CDS |
ACGAGCTTGTATAGCTGAGA+GGG | 0.600679 | tig0025360:-60125 | Msa1422360:CDS |
CGCAGCAAGTGTTAATAATG+GGG | 0.613845 | tig0025360:+60727 | None:intergenic |
TTGTATAGCTGAGAGGGACA+GGG | 0.623146 | tig0025360:-60119 | Msa1422360:CDS |
GGATGGGGACGAGAATGAGA+AGG | 0.624011 | tig0025360:-60158 | Msa1422360:CDS |
GGACAATTGAGGATTTGAAG+CGG | 0.630311 | tig0025360:-59635 | Msa1422360:CDS |
TGCTCATCGGGGATGCAACG+GGG | 0.636567 | tig0025360:-60179 | Msa1422360:CDS |
TACGAGCTTGTATAGCTGAG+AGG | 0.660649 | tig0025360:-60126 | Msa1422360:CDS |
ATTGTTACTTCTGCTCATCG+GGG | 0.682964 | tig0025360:-60190 | Msa1422360:CDS |
TGAGACGTCTGCGTTTAAAG+CGG | 0.689651 | tig0025360:-59885 | Msa1422360:CDS |
AAGCACACAAGACCAAGCAA+AGG | 0.706869 | tig0025360:-59340 | Msa1422360:CDS |
TTAAAGTGGAGAAGGCTGAG+GGG | 0.712977 | tig0025360:-59970 | Msa1422360:CDS |
TGTGGAAGAGAAATGTCGTG+CGG | 0.716063 | tig0025360:-59691 | Msa1422360:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATATTAACGTCAAAAG+GGG | + | tig0025360:59386-59405 | None:intergenic | 20.0% |
!! | CAAATATATTAACGTCAAAA+GGG | + | tig0025360:59387-59406 | None:intergenic | 20.0% |
!! | TCAAATATATTAACGTCAAA+AGG | + | tig0025360:59388-59407 | None:intergenic | 20.0% |
!! | CTGATAGTAATTTGATAAAA+TGG | - | tig0025360:59567-59586 | Msa1422360:CDS | 20.0% |
!!! | AGTATTTTACATCACAAATT+AGG | - | tig0025360:60625-60644 | Msa1422360:intron | 20.0% |
!! | AAATATATTAACGTCAAAAG+GGG | + | tig0025360:59386-59405 | None:intergenic | 20.0% |
!! | CAAATATATTAACGTCAAAA+GGG | + | tig0025360:59387-59406 | None:intergenic | 20.0% |
!! | TCAAATATATTAACGTCAAA+AGG | + | tig0025360:59388-59407 | None:intergenic | 20.0% |
!! | CTGATAGTAATTTGATAAAA+TGG | - | tig0025360:59567-59586 | Msa1422360:CDS | 20.0% |
!!! | AGTATTTTACATCACAAATT+AGG | - | tig0025360:60625-60644 | Msa1422360:intron | 20.0% |
! | CTGAATATAACTATAGTTCA+GGG | + | tig0025360:59697-59716 | None:intergenic | 25.0% |
! | GCAAATTGCAAAAATTAAAG+TGG | - | tig0025360:60079-60098 | Msa1422360:CDS | 25.0% |
!!! | TTCTAACTTGTATTTTAGCT+TGG | + | tig0025360:60593-60612 | None:intergenic | 25.0% |
!! | AAATTAGGTTGTCTAAAGAT+TGG | - | tig0025360:60640-60659 | Msa1422360:intron | 25.0% |
! | CACTTGTATATAATGTTTAG+CGG | - | tig0025360:60770-60789 | Msa1422360:exon | 25.0% |
! | CTGAATATAACTATAGTTCA+GGG | + | tig0025360:59697-59716 | None:intergenic | 25.0% |
! | GCAAATTGCAAAAATTAAAG+TGG | - | tig0025360:60079-60098 | Msa1422360:CDS | 25.0% |
!!! | TTCTAACTTGTATTTTAGCT+TGG | + | tig0025360:60593-60612 | None:intergenic | 25.0% |
!! | AAATTAGGTTGTCTAAAGAT+TGG | - | tig0025360:60640-60659 | Msa1422360:intron | 25.0% |
ACGGTTAATGTCAAAAACAT+AGG | + | tig0025360:59483-59502 | None:intergenic | 30.0% | |
TTCATAGAGTGGTACATATA+CGG | - | tig0025360:59533-59552 | Msa1422360:CDS | 30.0% | |
GCTGAATATAACTATAGTTC+AGG | + | tig0025360:59698-59717 | None:intergenic | 30.0% | |
TAATGAAATGCGTTGTAATG+CGG | - | tig0025360:59731-59750 | Msa1422360:CDS | 30.0% | |
TGATTGGAAGAATTTAATGC+TGG | - | tig0025360:59807-59826 | Msa1422360:intron | 30.0% | |
GATTGGAAGAATTTAATGCT+GGG | - | tig0025360:59808-59827 | Msa1422360:intron | 30.0% | |
ATTGGAAGAATTTAATGCTG+GGG | - | tig0025360:59809-59828 | Msa1422360:intron | 30.0% | |
ACTGGAACAAGAAAAGAATA+AGG | - | tig0025360:60052-60071 | Msa1422360:CDS | 30.0% | |
TGCAAAAATTAAAGTGGAGA+AGG | - | tig0025360:60085-60104 | Msa1422360:CDS | 30.0% | |
AAAAGCTAACGAAAAGTTGA+AGG | - | tig0025360:60270-60289 | Msa1422360:intron | 30.0% | |
CTCTAATTTAACCATCTCAA+TGG | + | tig0025360:60314-60333 | None:intergenic | 30.0% | |
CATTGAGATGGTTAAATTAG+AGG | - | tig0025360:60312-60331 | Msa1422360:intron | 30.0% | |
! | CATTTCAGTTTGATTTCTCA+GGG | + | tig0025360:60473-60492 | None:intergenic | 30.0% |
!!! | GCATATTTTTTGTCTGTTTC+TGG | - | tig0025360:60700-60719 | Msa1422360:intron | 30.0% |
ACGGTTAATGTCAAAAACAT+AGG | + | tig0025360:59483-59502 | None:intergenic | 30.0% | |
TTCATAGAGTGGTACATATA+CGG | - | tig0025360:59533-59552 | Msa1422360:CDS | 30.0% | |
GCTGAATATAACTATAGTTC+AGG | + | tig0025360:59698-59717 | None:intergenic | 30.0% | |
TAATGAAATGCGTTGTAATG+CGG | - | tig0025360:59731-59750 | Msa1422360:CDS | 30.0% | |
TGATTGGAAGAATTTAATGC+TGG | - | tig0025360:59807-59826 | Msa1422360:intron | 30.0% | |
GATTGGAAGAATTTAATGCT+GGG | - | tig0025360:59808-59827 | Msa1422360:intron | 30.0% | |
ATTGGAAGAATTTAATGCTG+GGG | - | tig0025360:59809-59828 | Msa1422360:intron | 30.0% | |
ACTGGAACAAGAAAAGAATA+AGG | - | tig0025360:60052-60071 | Msa1422360:CDS | 30.0% | |
TGCAAAAATTAAAGTGGAGA+AGG | - | tig0025360:60085-60104 | Msa1422360:CDS | 30.0% | |
AAAAGCTAACGAAAAGTTGA+AGG | - | tig0025360:60270-60289 | Msa1422360:intron | 30.0% | |
CTCTAATTTAACCATCTCAA+TGG | + | tig0025360:60314-60333 | None:intergenic | 30.0% | |
CATTGAGATGGTTAAATTAG+AGG | - | tig0025360:60312-60331 | Msa1422360:intron | 30.0% | |
! | CATTTCAGTTTGATTTCTCA+GGG | + | tig0025360:60473-60492 | None:intergenic | 30.0% |
!!! | GCATATTTTTTGTCTGTTTC+TGG | - | tig0025360:60700-60719 | Msa1422360:intron | 30.0% |
TCGCAGCAAGTGTTAATAAT+GGG | + | tig0025360:59340-59359 | None:intergenic | 35.0% | |
TTCGCAGCAAGTGTTAATAA+TGG | + | tig0025360:59341-59360 | None:intergenic | 35.0% | |
ATATTAACGTCAAAAGGGGT+AGG | + | tig0025360:59382-59401 | None:intergenic | 35.0% | |
GGTTTATATGCTTCATAGAG+TGG | - | tig0025360:59522-59541 | Msa1422360:CDS | 35.0% | |
TGTGATGTGAAAATCGAAAC+TGG | - | tig0025360:59780-59799 | Msa1422360:intron | 35.0% | |
GTGATGTGAAAATCGAAACT+GGG | - | tig0025360:59781-59800 | Msa1422360:intron | 35.0% | |
TGATGTGAAAATCGAAACTG+GGG | - | tig0025360:59782-59801 | Msa1422360:intron | 35.0% | |
! | AGATTGTTACTTCTGCTCAT+CGG | - | tig0025360:59871-59890 | Msa1422360:CDS | 35.0% |
!! | TTTTGGAGAGTGAAAAGAGA+AGG | - | tig0025360:59988-60007 | Msa1422360:CDS | 35.0% |
TTTGGAGAGTGAAAAGAGAA+GGG | - | tig0025360:59989-60008 | Msa1422360:CDS | 35.0% | |
TTCCAGTAACTTCCAAGTTT+CGG | + | tig0025360:60039-60058 | None:intergenic | 35.0% | |
AAGAAAAGCCGAGTTAGAAA+TGG | - | tig0025360:60246-60265 | Msa1422360:intron | 35.0% | |
!! | AGCTTTTGCCATTTCTAACT+CGG | + | tig0025360:60257-60276 | None:intergenic | 35.0% |
AGATAACTGGAACAAGTTTG+TGG | - | tig0025360:60354-60373 | Msa1422360:intron | 35.0% | |
AGAAGATAAGAGGACAATTG+AGG | - | tig0025360:60417-60436 | Msa1422360:intron | 35.0% | |
! | CCATTTCAGTTTGATTTCTC+AGG | + | tig0025360:60474-60493 | None:intergenic | 35.0% |
CCTGAGAAATCAAACTGAAA+TGG | - | tig0025360:60471-60490 | Msa1422360:intron | 35.0% | |
TCGCAGCAAGTGTTAATAAT+GGG | + | tig0025360:59340-59359 | None:intergenic | 35.0% | |
TTCGCAGCAAGTGTTAATAA+TGG | + | tig0025360:59341-59360 | None:intergenic | 35.0% | |
ATATTAACGTCAAAAGGGGT+AGG | + | tig0025360:59382-59401 | None:intergenic | 35.0% | |
GGTTTATATGCTTCATAGAG+TGG | - | tig0025360:59522-59541 | Msa1422360:CDS | 35.0% | |
TGTGATGTGAAAATCGAAAC+TGG | - | tig0025360:59780-59799 | Msa1422360:intron | 35.0% | |
GTGATGTGAAAATCGAAACT+GGG | - | tig0025360:59781-59800 | Msa1422360:intron | 35.0% | |
TGATGTGAAAATCGAAACTG+GGG | - | tig0025360:59782-59801 | Msa1422360:intron | 35.0% | |
! | AGATTGTTACTTCTGCTCAT+CGG | - | tig0025360:59871-59890 | Msa1422360:CDS | 35.0% |
!! | TTTTGGAGAGTGAAAAGAGA+AGG | - | tig0025360:59988-60007 | Msa1422360:CDS | 35.0% |
TTTGGAGAGTGAAAAGAGAA+GGG | - | tig0025360:59989-60008 | Msa1422360:CDS | 35.0% | |
TTCCAGTAACTTCCAAGTTT+CGG | + | tig0025360:60039-60058 | None:intergenic | 35.0% | |
AAGAAAAGCCGAGTTAGAAA+TGG | - | tig0025360:60246-60265 | Msa1422360:intron | 35.0% | |
!! | AGCTTTTGCCATTTCTAACT+CGG | + | tig0025360:60257-60276 | None:intergenic | 35.0% |
AGATAACTGGAACAAGTTTG+TGG | - | tig0025360:60354-60373 | Msa1422360:intron | 35.0% | |
AGAAGATAAGAGGACAATTG+AGG | - | tig0025360:60417-60436 | Msa1422360:intron | 35.0% | |
! | CCATTTCAGTTTGATTTCTC+AGG | + | tig0025360:60474-60493 | None:intergenic | 35.0% |
CCTGAGAAATCAAACTGAAA+TGG | - | tig0025360:60471-60490 | Msa1422360:intron | 35.0% | |
CGCAGCAAGTGTTAATAATG+GGG | + | tig0025360:59339-59358 | None:intergenic | 40.0% | |
! | TATTAACACTTGCTGCGAAC+AGG | - | tig0025360:59342-59361 | Msa1422360:CDS | 40.0% |
TTGACATACACTGACACATG+TGG | + | tig0025360:59609-59628 | None:intergenic | 40.0% | |
TCTAAGTGTTCGAAACGTGT+AGG | + | tig0025360:59635-59654 | None:intergenic | 40.0% | |
TGAGCAGAAGTAACAATCTG+AGG | + | tig0025360:59870-59889 | None:intergenic | 40.0% | |
! | GATTGTTACTTCTGCTCATC+GGG | - | tig0025360:59872-59891 | Msa1422360:CDS | 40.0% |
! | ATTGTTACTTCTGCTCATCG+GGG | - | tig0025360:59873-59892 | Msa1422360:CDS | 40.0% |
!! | GACGAGAATGAGAAGGTATT+AGG | - | tig0025360:59912-59931 | Msa1422360:CDS | 40.0% |
CAGGGAAATCTGTAGATTGA+AGG | - | tig0025360:59962-59981 | Msa1422360:CDS | 40.0% | |
! | CTGTAGATTGAAGGAGCTTT+TGG | - | tig0025360:59971-59990 | Msa1422360:CDS | 40.0% |
AATTAAAGTGGAGAAGGCTG+AGG | - | tig0025360:60091-60110 | Msa1422360:CDS | 40.0% | |
ATTAAAGTGGAGAAGGCTGA+GGG | - | tig0025360:60092-60111 | Msa1422360:CDS | 40.0% | |
! | TAGGGTTCAGATTGGTCAAT+TGG | - | tig0025360:60118-60137 | Msa1422360:CDS | 40.0% |
AAAGCACAAAGCCATTGAGA+TGG | - | tig0025360:60300-60319 | Msa1422360:intron | 40.0% | |
GGTTAAATTAGAGGAGCAGA+AGG | - | tig0025360:60321-60340 | Msa1422360:intron | 40.0% | |
GGACAATTGAGGATTTGAAG+CGG | - | tig0025360:60428-60447 | Msa1422360:intron | 40.0% | |
!! | AGTTTTCGCACTGATGTCAA+CGG | + | tig0025360:60497-60516 | None:intergenic | 40.0% |
! | TCTACGTCACTTTGATGTAC+TGG | - | tig0025360:60675-60694 | Msa1422360:intron | 40.0% |
CGCAGCAAGTGTTAATAATG+GGG | + | tig0025360:59339-59358 | None:intergenic | 40.0% | |
! | TATTAACACTTGCTGCGAAC+AGG | - | tig0025360:59342-59361 | Msa1422360:CDS | 40.0% |
TTGACATACACTGACACATG+TGG | + | tig0025360:59609-59628 | None:intergenic | 40.0% | |
TCTAAGTGTTCGAAACGTGT+AGG | + | tig0025360:59635-59654 | None:intergenic | 40.0% | |
TGAGCAGAAGTAACAATCTG+AGG | + | tig0025360:59870-59889 | None:intergenic | 40.0% | |
! | GATTGTTACTTCTGCTCATC+GGG | - | tig0025360:59872-59891 | Msa1422360:CDS | 40.0% |
! | ATTGTTACTTCTGCTCATCG+GGG | - | tig0025360:59873-59892 | Msa1422360:CDS | 40.0% |
!! | GACGAGAATGAGAAGGTATT+AGG | - | tig0025360:59912-59931 | Msa1422360:CDS | 40.0% |
CAGGGAAATCTGTAGATTGA+AGG | - | tig0025360:59962-59981 | Msa1422360:CDS | 40.0% | |
! | CTGTAGATTGAAGGAGCTTT+TGG | - | tig0025360:59971-59990 | Msa1422360:CDS | 40.0% |
AATTAAAGTGGAGAAGGCTG+AGG | - | tig0025360:60091-60110 | Msa1422360:CDS | 40.0% | |
ATTAAAGTGGAGAAGGCTGA+GGG | - | tig0025360:60092-60111 | Msa1422360:CDS | 40.0% | |
! | TAGGGTTCAGATTGGTCAAT+TGG | - | tig0025360:60118-60137 | Msa1422360:CDS | 40.0% |
AAAGCACAAAGCCATTGAGA+TGG | - | tig0025360:60300-60319 | Msa1422360:intron | 40.0% | |
GGTTAAATTAGAGGAGCAGA+AGG | - | tig0025360:60321-60340 | Msa1422360:intron | 40.0% | |
GGACAATTGAGGATTTGAAG+CGG | - | tig0025360:60428-60447 | Msa1422360:intron | 40.0% | |
!! | AGTTTTCGCACTGATGTCAA+CGG | + | tig0025360:60497-60516 | None:intergenic | 40.0% |
! | TCTACGTCACTTTGATGTAC+TGG | - | tig0025360:60675-60694 | Msa1422360:intron | 40.0% |
AATCGAAACTGGGGAGTGAT+TGG | - | tig0025360:59791-59810 | Msa1422360:intron | 45.0% | |
AGAATTTAATGCTGGGGCAC+CGG | - | tig0025360:59815-59834 | Msa1422360:intron | 45.0% | |
TACGAGCTTGTATAGCTGAG+AGG | - | tig0025360:59937-59956 | Msa1422360:CDS | 45.0% | |
ACGAGCTTGTATAGCTGAGA+GGG | - | tig0025360:59938-59957 | Msa1422360:CDS | 45.0% | |
TTGTATAGCTGAGAGGGACA+GGG | - | tig0025360:59944-59963 | Msa1422360:CDS | 45.0% | |
! | AGAGAAGGGCTGATTCTAAG+AGG | - | tig0025360:60003-60022 | Msa1422360:CDS | 45.0% |
GGAAGAAAGTTGCCGAAACT+TGG | - | tig0025360:60024-60043 | Msa1422360:CDS | 45.0% | |
TGCCGAAACTTGGAAGTTAC+TGG | - | tig0025360:60034-60053 | Msa1422360:CDS | 45.0% | |
TTAAAGTGGAGAAGGCTGAG+GGG | - | tig0025360:60093-60112 | Msa1422360:CDS | 45.0% | |
TGAGACGTCTGCGTTTAAAG+CGG | - | tig0025360:60178-60197 | Msa1422360:CDS | 45.0% | |
!!! | GCTTTTAAAATCCTGCCGTC+TGG | + | tig0025360:60207-60226 | None:intergenic | 45.0% |
AGGCACTTGCACAAGATAAC+TGG | - | tig0025360:60341-60360 | Msa1422360:intron | 45.0% | |
TGTGGAAGAGAAATGTCGTG+CGG | - | tig0025360:60372-60391 | Msa1422360:intron | 45.0% | |
AGCAGCTAGCAGAAGATAAG+AGG | - | tig0025360:60407-60426 | Msa1422360:intron | 45.0% | |
AAGCACACAAGACCAAGCAA+AGG | - | tig0025360:60723-60742 | Msa1422360:CDS | 45.0% | |
ACACAAGACCAAGCAAAGGT+TGG | - | tig0025360:60727-60746 | Msa1422360:CDS | 45.0% | |
CAGTGAAACCAACCTTTGCT+TGG | + | tig0025360:60738-60757 | None:intergenic | 45.0% | |
AATCGAAACTGGGGAGTGAT+TGG | - | tig0025360:59791-59810 | Msa1422360:intron | 45.0% | |
AGAATTTAATGCTGGGGCAC+CGG | - | tig0025360:59815-59834 | Msa1422360:intron | 45.0% | |
TACGAGCTTGTATAGCTGAG+AGG | - | tig0025360:59937-59956 | Msa1422360:CDS | 45.0% | |
ACGAGCTTGTATAGCTGAGA+GGG | - | tig0025360:59938-59957 | Msa1422360:CDS | 45.0% | |
TTGTATAGCTGAGAGGGACA+GGG | - | tig0025360:59944-59963 | Msa1422360:CDS | 45.0% | |
! | AGAGAAGGGCTGATTCTAAG+AGG | - | tig0025360:60003-60022 | Msa1422360:CDS | 45.0% |
GGAAGAAAGTTGCCGAAACT+TGG | - | tig0025360:60024-60043 | Msa1422360:CDS | 45.0% | |
TGCCGAAACTTGGAAGTTAC+TGG | - | tig0025360:60034-60053 | Msa1422360:CDS | 45.0% | |
TTAAAGTGGAGAAGGCTGAG+GGG | - | tig0025360:60093-60112 | Msa1422360:CDS | 45.0% | |
TGAGACGTCTGCGTTTAAAG+CGG | - | tig0025360:60178-60197 | Msa1422360:CDS | 45.0% | |
!!! | GCTTTTAAAATCCTGCCGTC+TGG | + | tig0025360:60207-60226 | None:intergenic | 45.0% |
AGGCACTTGCACAAGATAAC+TGG | - | tig0025360:60341-60360 | Msa1422360:intron | 45.0% | |
TGTGGAAGAGAAATGTCGTG+CGG | - | tig0025360:60372-60391 | Msa1422360:intron | 45.0% | |
AGCAGCTAGCAGAAGATAAG+AGG | - | tig0025360:60407-60426 | Msa1422360:intron | 45.0% | |
AAGCACACAAGACCAAGCAA+AGG | - | tig0025360:60723-60742 | Msa1422360:CDS | 45.0% | |
ACACAAGACCAAGCAAAGGT+TGG | - | tig0025360:60727-60746 | Msa1422360:CDS | 45.0% | |
CAGTGAAACCAACCTTTGCT+TGG | + | tig0025360:60738-60757 | None:intergenic | 45.0% | |
!! | ATAAATTAATATATTTGTAT+TGG | - | tig0025360:59454-59473 | Msa1422360:CDS | 5.0% |
!! | ATAAATTAATATATTTGTAT+TGG | - | tig0025360:59454-59473 | Msa1422360:CDS | 5.0% |
GACAGACATCTGACACGACA+CGG | + | tig0025360:59502-59521 | None:intergenic | 50.0% | |
GTGTCGTGTCAGATGTCTGT+CGG | - | tig0025360:59501-59520 | Msa1422360:CDS | 50.0% | |
CTGAGTCCATTATTCACCGC+CGG | + | tig0025360:59837-59856 | None:intergenic | 50.0% | |
CTTGTATAGCTGAGAGGGAC+AGG | - | tig0025360:59943-59962 | Msa1422360:CDS | 50.0% | |
! | GAGGGGTATAGGGTTCAGAT+TGG | - | tig0025360:60110-60129 | Msa1422360:CDS | 50.0% |
!! | CGGCAGGATTTTAAAAGCGC+AGG | - | tig0025360:60209-60228 | Msa1422360:intron | 50.0% |
GACAGACATCTGACACGACA+CGG | + | tig0025360:59502-59521 | None:intergenic | 50.0% | |
GTGTCGTGTCAGATGTCTGT+CGG | - | tig0025360:59501-59520 | Msa1422360:CDS | 50.0% | |
CTGAGTCCATTATTCACCGC+CGG | + | tig0025360:59837-59856 | None:intergenic | 50.0% | |
CTTGTATAGCTGAGAGGGAC+AGG | - | tig0025360:59943-59962 | Msa1422360:CDS | 50.0% | |
! | GAGGGGTATAGGGTTCAGAT+TGG | - | tig0025360:60110-60129 | Msa1422360:CDS | 50.0% |
!! | CGGCAGGATTTTAAAAGCGC+AGG | - | tig0025360:60209-60228 | Msa1422360:intron | 50.0% |
!! | GATTTTAGCGTCTCCGCCAC+CGG | + | tig0025360:59313-59332 | None:intergenic | 55.0% |
!! | ATTTAATGCTGGGGCACCGG+CGG | - | tig0025360:59818-59837 | Msa1422360:intron | 55.0% |
TCTGCTCATCGGGGATGCAA+CGG | - | tig0025360:59882-59901 | Msa1422360:CDS | 55.0% | |
GGATGGGGACGAGAATGAGA+AGG | - | tig0025360:59905-59924 | Msa1422360:CDS | 55.0% | |
! | TGGAGAAGGCTGAGGGGTAT+AGG | - | tig0025360:60099-60118 | Msa1422360:CDS | 55.0% |
! | GGAGAAGGCTGAGGGGTATA+GGG | - | tig0025360:60100-60119 | Msa1422360:CDS | 55.0% |
! | GACGTCTGCGTTTAAAGCGG+CGG | - | tig0025360:60181-60200 | Msa1422360:CDS | 55.0% |
!! | GATTTTAGCGTCTCCGCCAC+CGG | + | tig0025360:59313-59332 | None:intergenic | 55.0% |
!! | ATTTAATGCTGGGGCACCGG+CGG | - | tig0025360:59818-59837 | Msa1422360:intron | 55.0% |
TCTGCTCATCGGGGATGCAA+CGG | - | tig0025360:59882-59901 | Msa1422360:CDS | 55.0% | |
GGATGGGGACGAGAATGAGA+AGG | - | tig0025360:59905-59924 | Msa1422360:CDS | 55.0% | |
! | TGGAGAAGGCTGAGGGGTAT+AGG | - | tig0025360:60099-60118 | Msa1422360:CDS | 55.0% |
! | GGAGAAGGCTGAGGGGTATA+GGG | - | tig0025360:60100-60119 | Msa1422360:CDS | 55.0% |
! | GACGTCTGCGTTTAAAGCGG+CGG | - | tig0025360:60181-60200 | Msa1422360:CDS | 55.0% |
CTGCTCATCGGGGATGCAAC+GGG | - | tig0025360:59883-59902 | Msa1422360:CDS | 60.0% | |
TGCTCATCGGGGATGCAACG+GGG | - | tig0025360:59884-59903 | Msa1422360:CDS | 60.0% | |
ATCGGGGATGCAACGGGGAT+GGG | - | tig0025360:59889-59908 | Msa1422360:CDS | 60.0% | |
! | CGTTTAAAGCGGCGGCCAGA+CGG | - | tig0025360:60189-60208 | Msa1422360:CDS | 60.0% |
CTGCTCATCGGGGATGCAAC+GGG | - | tig0025360:59883-59902 | Msa1422360:CDS | 60.0% | |
TGCTCATCGGGGATGCAACG+GGG | - | tig0025360:59884-59903 | Msa1422360:CDS | 60.0% | |
ATCGGGGATGCAACGGGGAT+GGG | - | tig0025360:59889-59908 | Msa1422360:CDS | 60.0% | |
! | CGTTTAAAGCGGCGGCCAGA+CGG | - | tig0025360:60189-60208 | Msa1422360:CDS | 60.0% |
!! | GGGGCACCGGCGGTGAATAA+TGG | - | tig0025360:59828-59847 | Msa1422360:intron | 65.0% |
CATCGGGGATGCAACGGGGA+TGG | - | tig0025360:59888-59907 | Msa1422360:CDS | 65.0% | |
TCGGGGATGCAACGGGGATG+GGG | - | tig0025360:59890-59909 | Msa1422360:CDS | 65.0% | |
!! | GGGGCACCGGCGGTGAATAA+TGG | - | tig0025360:59828-59847 | Msa1422360:intron | 65.0% |
CATCGGGGATGCAACGGGGA+TGG | - | tig0025360:59888-59907 | Msa1422360:CDS | 65.0% | |
TCGGGGATGCAACGGGGATG+GGG | - | tig0025360:59890-59909 | Msa1422360:CDS | 65.0% | |
!! | GGACATGGCAGTGCCGGTGG+CGG | - | tig0025360:59297-59316 | Msa1422360:CDS | 70.0% |
TAAAGCGGCGGCCAGACGGC+AGG | - | tig0025360:60193-60212 | Msa1422360:CDS | 70.0% | |
!! | GGACATGGCAGTGCCGGTGG+CGG | - | tig0025360:59297-59316 | Msa1422360:CDS | 70.0% |
TAAAGCGGCGGCCAGACGGC+AGG | - | tig0025360:60193-60212 | Msa1422360:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0025360 | gene | 59296 | 60789 | 59296 | ID=Msa1422360;Name=Msa1422360 |
tig0025360 | mRNA | 59296 | 60789 | 59296 | ID=Msa1422360-mRNA-1;Parent=Msa1422360;Name=Msa1422360-mRNA-1;_AED=0.44;_eAED=0.44;_QI=5|0|0.33|1|1|1|3|0|292 |
tig0025360 | exon | 59296 | 59753 | 59296 | ID=Msa1422360-mRNA-1:exon:2542;Parent=Msa1422360-mRNA-1 |
tig0025360 | exon | 59855 | 60212 | 59855 | ID=Msa1422360-mRNA-1:exon:2541;Parent=Msa1422360-mRNA-1 |
tig0025360 | exon | 60722 | 60789 | 60722 | ID=Msa1422360-mRNA-1:exon:2540;Parent=Msa1422360-mRNA-1 |
tig0025360 | five_prime_UTR | 60785 | 60789 | 60785 | ID=Msa1422360-mRNA-1:five_prime_utr;Parent=Msa1422360-mRNA-1 |
tig0025360 | CDS | 60722 | 60784 | 60722 | ID=Msa1422360-mRNA-1:cds;Parent=Msa1422360-mRNA-1 |
tig0025360 | CDS | 59855 | 60212 | 59855 | ID=Msa1422360-mRNA-1:cds;Parent=Msa1422360-mRNA-1 |
tig0025360 | CDS | 59296 | 59753 | 59296 | ID=Msa1422360-mRNA-1:cds;Parent=Msa1422360-mRNA-1 |
Gene Sequence |
Protein sequence |