AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422360 MtrunA17_Chr5g0442241 81.046 306 24 1 21 292 93 398 5.65e-165 474
Msa1422360 MtrunA17_Chr7g0233411 69.820 222 33 1 105 292 2 223 3.96e-102 299
Msa1422360 MtrunA17_Chr5g0442271 89.922 129 13 0 164 292 1 129 1.18e-77 233
Msa1422360 MtrunA17_Chr2g0292951 37.658 316 135 10 23 278 97 410 2.86e-33 125
Msa1422360 MtrunA17_Chr5g0442261 83.636 55 9 0 32 86 16 70 2.02e-24 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAGATTGAAGGAGCTTT+TGG 0.189291 tig0025360:-60092 Msa1422360:CDS
TGGAGAAGGCTGAGGGGTAT+AGG 0.242967 tig0025360:-59964 Msa1422360:CDS
CCATTTCAGTTTGATTTCTC+AGG 0.311924 tig0025360:+59592 None:intergenic
TGCCGAAACTTGGAAGTTAC+TGG 0.318427 tig0025360:-60029 Msa1422360:CDS
TTCCAGTAACTTCCAAGTTT+CGG 0.329335 tig0025360:+60027 None:intergenic
GATTGTTACTTCTGCTCATC+GGG 0.347256 tig0025360:-60191 Msa1422360:CDS
CTGCTCATCGGGGATGCAAC+GGG 0.348667 tig0025360:-60180 Msa1422360:CDS
AGGCACTTGCACAAGATAAC+TGG 0.361371 tig0025360:-59722 Msa1422360:CDS
ATCGGGGATGCAACGGGGAT+GGG 0.362558 tig0025360:-60174 Msa1422360:CDS
TCGGGGATGCAACGGGGATG+GGG 0.364245 tig0025360:-60173 Msa1422360:CDS
GACGAGAATGAGAAGGTATT+AGG 0.370192 tig0025360:-60151 Msa1422360:CDS
TTCGCAGCAAGTGTTAATAA+TGG 0.380922 tig0025360:+60725 None:intergenic
TCGCAGCAAGTGTTAATAAT+GGG 0.386484 tig0025360:+60726 None:intergenic
TAGGGTTCAGATTGGTCAAT+TGG 0.393981 tig0025360:-59945 Msa1422360:CDS
GGAGAAGGCTGAGGGGTATA+GGG 0.396621 tig0025360:-59963 Msa1422360:CDS
GGAAGAAAGTTGCCGAAACT+TGG 0.407982 tig0025360:-60039 Msa1422360:CDS
ACTGGAACAAGAAAAGAATA+AGG 0.414135 tig0025360:-60011 Msa1422360:CDS
AAATTAGGTTGTCTAAAGAT+TGG 0.418099 tig0025360:-59423 Msa1422360:CDS
CATCGGGGATGCAACGGGGA+TGG 0.424317 tig0025360:-60175 Msa1422360:CDS
TATTAACACTTGCTGCGAAC+AGG 0.428860 tig0025360:-60721 Msa1422360:intron
CTTGTATAGCTGAGAGGGAC+AGG 0.429483 tig0025360:-60120 Msa1422360:CDS
CAGTGAAACCAACCTTTGCT+TGG 0.435279 tig0025360:+59328 None:intergenic
AGCAGCTAGCAGAAGATAAG+AGG 0.445083 tig0025360:-59656 Msa1422360:CDS
CTCGTCGGACATGGCAGTGC+CGG 0.445452 tig0025360:-60772 None:intergenic
CCTGAGAAATCAAACTGAAA+TGG 0.447150 tig0025360:-59592 Msa1422360:CDS
TCTACGTCACTTTGATGTAC+TGG 0.457048 tig0025360:-59388 Msa1422360:CDS
AGATTGTTACTTCTGCTCAT+CGG 0.461787 tig0025360:-60192 Msa1422360:CDS
TAAAGCGGCGGCCAGACGGC+AGG 0.494382 tig0025360:-59870 Msa1422360:CDS
CATTTCAGTTTGATTTCTCA+GGG 0.502026 tig0025360:+59593 None:intergenic
CGTTTAAAGCGGCGGCCAGA+CGG 0.512034 tig0025360:-59874 Msa1422360:CDS
AGATAACTGGAACAAGTTTG+TGG 0.518705 tig0025360:-59709 Msa1422360:CDS
CAGGGAAATCTGTAGATTGA+AGG 0.527681 tig0025360:-60101 Msa1422360:CDS
GGACATGGCAGTGCCGGTGG+CGG 0.536280 tig0025360:-60766 Msa1422360:exon
TTTGCGAATCTCGTCGGACA+TGG 0.543542 tig0025360:-60781 None:intergenic
GGTTAAATTAGAGGAGCAGA+AGG 0.543577 tig0025360:-59742 Msa1422360:intron
AGAGAAGGGCTGATTCTAAG+AGG 0.557315 tig0025360:-60060 Msa1422360:CDS
TCTGCTCATCGGGGATGCAA+CGG 0.558030 tig0025360:-60181 Msa1422360:CDS
ATTAAAGTGGAGAAGGCTGA+GGG 0.564267 tig0025360:-59971 Msa1422360:CDS
GTCGGACATGGCAGTGCCGG+TGG 0.571110 tig0025360:-60769 Msa1422360:exon
AGAAGATAAGAGGACAATTG+AGG 0.575896 tig0025360:-59646 Msa1422360:CDS
TTTGGAGAGTGAAAAGAGAA+GGG 0.578977 tig0025360:-60074 Msa1422360:CDS
ACACAAGACCAAGCAAAGGT+TGG 0.582289 tig0025360:-59336 Msa1422360:CDS
GAGGGGTATAGGGTTCAGAT+TGG 0.592717 tig0025360:-59953 Msa1422360:CDS
AATTAAAGTGGAGAAGGCTG+AGG 0.598799 tig0025360:-59972 Msa1422360:CDS
GACGTCTGCGTTTAAAGCGG+CGG 0.599519 tig0025360:-59882 Msa1422360:CDS
ACGAGCTTGTATAGCTGAGA+GGG 0.600679 tig0025360:-60125 Msa1422360:CDS
CGCAGCAAGTGTTAATAATG+GGG 0.613845 tig0025360:+60727 None:intergenic
TTGTATAGCTGAGAGGGACA+GGG 0.623146 tig0025360:-60119 Msa1422360:CDS
GGATGGGGACGAGAATGAGA+AGG 0.624011 tig0025360:-60158 Msa1422360:CDS
GGACAATTGAGGATTTGAAG+CGG 0.630311 tig0025360:-59635 Msa1422360:CDS
TGCTCATCGGGGATGCAACG+GGG 0.636567 tig0025360:-60179 Msa1422360:CDS
TACGAGCTTGTATAGCTGAG+AGG 0.660649 tig0025360:-60126 Msa1422360:CDS
ATTGTTACTTCTGCTCATCG+GGG 0.682964 tig0025360:-60190 Msa1422360:CDS
TGAGACGTCTGCGTTTAAAG+CGG 0.689651 tig0025360:-59885 Msa1422360:CDS
AAGCACACAAGACCAAGCAA+AGG 0.706869 tig0025360:-59340 Msa1422360:CDS
TTAAAGTGGAGAAGGCTGAG+GGG 0.712977 tig0025360:-59970 Msa1422360:CDS
TGTGGAAGAGAAATGTCGTG+CGG 0.716063 tig0025360:-59691 Msa1422360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATTAACGTCAAAAG+GGG + tig0025360:59386-59405 None:intergenic 20.0%
!! CAAATATATTAACGTCAAAA+GGG + tig0025360:59387-59406 None:intergenic 20.0%
!! TCAAATATATTAACGTCAAA+AGG + tig0025360:59388-59407 None:intergenic 20.0%
!! CTGATAGTAATTTGATAAAA+TGG - tig0025360:59567-59586 Msa1422360:CDS 20.0%
!!! AGTATTTTACATCACAAATT+AGG - tig0025360:60625-60644 Msa1422360:intron 20.0%
!! AAATATATTAACGTCAAAAG+GGG + tig0025360:59386-59405 None:intergenic 20.0%
!! CAAATATATTAACGTCAAAA+GGG + tig0025360:59387-59406 None:intergenic 20.0%
!! TCAAATATATTAACGTCAAA+AGG + tig0025360:59388-59407 None:intergenic 20.0%
!! CTGATAGTAATTTGATAAAA+TGG - tig0025360:59567-59586 Msa1422360:CDS 20.0%
!!! AGTATTTTACATCACAAATT+AGG - tig0025360:60625-60644 Msa1422360:intron 20.0%
! CTGAATATAACTATAGTTCA+GGG + tig0025360:59697-59716 None:intergenic 25.0%
! GCAAATTGCAAAAATTAAAG+TGG - tig0025360:60079-60098 Msa1422360:CDS 25.0%
!!! TTCTAACTTGTATTTTAGCT+TGG + tig0025360:60593-60612 None:intergenic 25.0%
!! AAATTAGGTTGTCTAAAGAT+TGG - tig0025360:60640-60659 Msa1422360:intron 25.0%
! CACTTGTATATAATGTTTAG+CGG - tig0025360:60770-60789 Msa1422360:exon 25.0%
! CTGAATATAACTATAGTTCA+GGG + tig0025360:59697-59716 None:intergenic 25.0%
! GCAAATTGCAAAAATTAAAG+TGG - tig0025360:60079-60098 Msa1422360:CDS 25.0%
!!! TTCTAACTTGTATTTTAGCT+TGG + tig0025360:60593-60612 None:intergenic 25.0%
!! AAATTAGGTTGTCTAAAGAT+TGG - tig0025360:60640-60659 Msa1422360:intron 25.0%
ACGGTTAATGTCAAAAACAT+AGG + tig0025360:59483-59502 None:intergenic 30.0%
TTCATAGAGTGGTACATATA+CGG - tig0025360:59533-59552 Msa1422360:CDS 30.0%
GCTGAATATAACTATAGTTC+AGG + tig0025360:59698-59717 None:intergenic 30.0%
TAATGAAATGCGTTGTAATG+CGG - tig0025360:59731-59750 Msa1422360:CDS 30.0%
TGATTGGAAGAATTTAATGC+TGG - tig0025360:59807-59826 Msa1422360:intron 30.0%
GATTGGAAGAATTTAATGCT+GGG - tig0025360:59808-59827 Msa1422360:intron 30.0%
ATTGGAAGAATTTAATGCTG+GGG - tig0025360:59809-59828 Msa1422360:intron 30.0%
ACTGGAACAAGAAAAGAATA+AGG - tig0025360:60052-60071 Msa1422360:CDS 30.0%
TGCAAAAATTAAAGTGGAGA+AGG - tig0025360:60085-60104 Msa1422360:CDS 30.0%
AAAAGCTAACGAAAAGTTGA+AGG - tig0025360:60270-60289 Msa1422360:intron 30.0%
CTCTAATTTAACCATCTCAA+TGG + tig0025360:60314-60333 None:intergenic 30.0%
CATTGAGATGGTTAAATTAG+AGG - tig0025360:60312-60331 Msa1422360:intron 30.0%
! CATTTCAGTTTGATTTCTCA+GGG + tig0025360:60473-60492 None:intergenic 30.0%
!!! GCATATTTTTTGTCTGTTTC+TGG - tig0025360:60700-60719 Msa1422360:intron 30.0%
ACGGTTAATGTCAAAAACAT+AGG + tig0025360:59483-59502 None:intergenic 30.0%
TTCATAGAGTGGTACATATA+CGG - tig0025360:59533-59552 Msa1422360:CDS 30.0%
GCTGAATATAACTATAGTTC+AGG + tig0025360:59698-59717 None:intergenic 30.0%
TAATGAAATGCGTTGTAATG+CGG - tig0025360:59731-59750 Msa1422360:CDS 30.0%
TGATTGGAAGAATTTAATGC+TGG - tig0025360:59807-59826 Msa1422360:intron 30.0%
GATTGGAAGAATTTAATGCT+GGG - tig0025360:59808-59827 Msa1422360:intron 30.0%
ATTGGAAGAATTTAATGCTG+GGG - tig0025360:59809-59828 Msa1422360:intron 30.0%
ACTGGAACAAGAAAAGAATA+AGG - tig0025360:60052-60071 Msa1422360:CDS 30.0%
TGCAAAAATTAAAGTGGAGA+AGG - tig0025360:60085-60104 Msa1422360:CDS 30.0%
AAAAGCTAACGAAAAGTTGA+AGG - tig0025360:60270-60289 Msa1422360:intron 30.0%
CTCTAATTTAACCATCTCAA+TGG + tig0025360:60314-60333 None:intergenic 30.0%
CATTGAGATGGTTAAATTAG+AGG - tig0025360:60312-60331 Msa1422360:intron 30.0%
! CATTTCAGTTTGATTTCTCA+GGG + tig0025360:60473-60492 None:intergenic 30.0%
!!! GCATATTTTTTGTCTGTTTC+TGG - tig0025360:60700-60719 Msa1422360:intron 30.0%
TCGCAGCAAGTGTTAATAAT+GGG + tig0025360:59340-59359 None:intergenic 35.0%
TTCGCAGCAAGTGTTAATAA+TGG + tig0025360:59341-59360 None:intergenic 35.0%
ATATTAACGTCAAAAGGGGT+AGG + tig0025360:59382-59401 None:intergenic 35.0%
GGTTTATATGCTTCATAGAG+TGG - tig0025360:59522-59541 Msa1422360:CDS 35.0%
TGTGATGTGAAAATCGAAAC+TGG - tig0025360:59780-59799 Msa1422360:intron 35.0%
GTGATGTGAAAATCGAAACT+GGG - tig0025360:59781-59800 Msa1422360:intron 35.0%
TGATGTGAAAATCGAAACTG+GGG - tig0025360:59782-59801 Msa1422360:intron 35.0%
! AGATTGTTACTTCTGCTCAT+CGG - tig0025360:59871-59890 Msa1422360:CDS 35.0%
!! TTTTGGAGAGTGAAAAGAGA+AGG - tig0025360:59988-60007 Msa1422360:CDS 35.0%
TTTGGAGAGTGAAAAGAGAA+GGG - tig0025360:59989-60008 Msa1422360:CDS 35.0%
TTCCAGTAACTTCCAAGTTT+CGG + tig0025360:60039-60058 None:intergenic 35.0%
AAGAAAAGCCGAGTTAGAAA+TGG - tig0025360:60246-60265 Msa1422360:intron 35.0%
!! AGCTTTTGCCATTTCTAACT+CGG + tig0025360:60257-60276 None:intergenic 35.0%
AGATAACTGGAACAAGTTTG+TGG - tig0025360:60354-60373 Msa1422360:intron 35.0%
AGAAGATAAGAGGACAATTG+AGG - tig0025360:60417-60436 Msa1422360:intron 35.0%
! CCATTTCAGTTTGATTTCTC+AGG + tig0025360:60474-60493 None:intergenic 35.0%
CCTGAGAAATCAAACTGAAA+TGG - tig0025360:60471-60490 Msa1422360:intron 35.0%
TCGCAGCAAGTGTTAATAAT+GGG + tig0025360:59340-59359 None:intergenic 35.0%
TTCGCAGCAAGTGTTAATAA+TGG + tig0025360:59341-59360 None:intergenic 35.0%
ATATTAACGTCAAAAGGGGT+AGG + tig0025360:59382-59401 None:intergenic 35.0%
GGTTTATATGCTTCATAGAG+TGG - tig0025360:59522-59541 Msa1422360:CDS 35.0%
TGTGATGTGAAAATCGAAAC+TGG - tig0025360:59780-59799 Msa1422360:intron 35.0%
GTGATGTGAAAATCGAAACT+GGG - tig0025360:59781-59800 Msa1422360:intron 35.0%
TGATGTGAAAATCGAAACTG+GGG - tig0025360:59782-59801 Msa1422360:intron 35.0%
! AGATTGTTACTTCTGCTCAT+CGG - tig0025360:59871-59890 Msa1422360:CDS 35.0%
!! TTTTGGAGAGTGAAAAGAGA+AGG - tig0025360:59988-60007 Msa1422360:CDS 35.0%
TTTGGAGAGTGAAAAGAGAA+GGG - tig0025360:59989-60008 Msa1422360:CDS 35.0%
TTCCAGTAACTTCCAAGTTT+CGG + tig0025360:60039-60058 None:intergenic 35.0%
AAGAAAAGCCGAGTTAGAAA+TGG - tig0025360:60246-60265 Msa1422360:intron 35.0%
!! AGCTTTTGCCATTTCTAACT+CGG + tig0025360:60257-60276 None:intergenic 35.0%
AGATAACTGGAACAAGTTTG+TGG - tig0025360:60354-60373 Msa1422360:intron 35.0%
AGAAGATAAGAGGACAATTG+AGG - tig0025360:60417-60436 Msa1422360:intron 35.0%
! CCATTTCAGTTTGATTTCTC+AGG + tig0025360:60474-60493 None:intergenic 35.0%
CCTGAGAAATCAAACTGAAA+TGG - tig0025360:60471-60490 Msa1422360:intron 35.0%
CGCAGCAAGTGTTAATAATG+GGG + tig0025360:59339-59358 None:intergenic 40.0%
! TATTAACACTTGCTGCGAAC+AGG - tig0025360:59342-59361 Msa1422360:CDS 40.0%
TTGACATACACTGACACATG+TGG + tig0025360:59609-59628 None:intergenic 40.0%
TCTAAGTGTTCGAAACGTGT+AGG + tig0025360:59635-59654 None:intergenic 40.0%
TGAGCAGAAGTAACAATCTG+AGG + tig0025360:59870-59889 None:intergenic 40.0%
! GATTGTTACTTCTGCTCATC+GGG - tig0025360:59872-59891 Msa1422360:CDS 40.0%
! ATTGTTACTTCTGCTCATCG+GGG - tig0025360:59873-59892 Msa1422360:CDS 40.0%
!! GACGAGAATGAGAAGGTATT+AGG - tig0025360:59912-59931 Msa1422360:CDS 40.0%
CAGGGAAATCTGTAGATTGA+AGG - tig0025360:59962-59981 Msa1422360:CDS 40.0%
! CTGTAGATTGAAGGAGCTTT+TGG - tig0025360:59971-59990 Msa1422360:CDS 40.0%
AATTAAAGTGGAGAAGGCTG+AGG - tig0025360:60091-60110 Msa1422360:CDS 40.0%
ATTAAAGTGGAGAAGGCTGA+GGG - tig0025360:60092-60111 Msa1422360:CDS 40.0%
! TAGGGTTCAGATTGGTCAAT+TGG - tig0025360:60118-60137 Msa1422360:CDS 40.0%
AAAGCACAAAGCCATTGAGA+TGG - tig0025360:60300-60319 Msa1422360:intron 40.0%
GGTTAAATTAGAGGAGCAGA+AGG - tig0025360:60321-60340 Msa1422360:intron 40.0%
GGACAATTGAGGATTTGAAG+CGG - tig0025360:60428-60447 Msa1422360:intron 40.0%
!! AGTTTTCGCACTGATGTCAA+CGG + tig0025360:60497-60516 None:intergenic 40.0%
! TCTACGTCACTTTGATGTAC+TGG - tig0025360:60675-60694 Msa1422360:intron 40.0%
CGCAGCAAGTGTTAATAATG+GGG + tig0025360:59339-59358 None:intergenic 40.0%
! TATTAACACTTGCTGCGAAC+AGG - tig0025360:59342-59361 Msa1422360:CDS 40.0%
TTGACATACACTGACACATG+TGG + tig0025360:59609-59628 None:intergenic 40.0%
TCTAAGTGTTCGAAACGTGT+AGG + tig0025360:59635-59654 None:intergenic 40.0%
TGAGCAGAAGTAACAATCTG+AGG + tig0025360:59870-59889 None:intergenic 40.0%
! GATTGTTACTTCTGCTCATC+GGG - tig0025360:59872-59891 Msa1422360:CDS 40.0%
! ATTGTTACTTCTGCTCATCG+GGG - tig0025360:59873-59892 Msa1422360:CDS 40.0%
!! GACGAGAATGAGAAGGTATT+AGG - tig0025360:59912-59931 Msa1422360:CDS 40.0%
CAGGGAAATCTGTAGATTGA+AGG - tig0025360:59962-59981 Msa1422360:CDS 40.0%
! CTGTAGATTGAAGGAGCTTT+TGG - tig0025360:59971-59990 Msa1422360:CDS 40.0%
AATTAAAGTGGAGAAGGCTG+AGG - tig0025360:60091-60110 Msa1422360:CDS 40.0%
ATTAAAGTGGAGAAGGCTGA+GGG - tig0025360:60092-60111 Msa1422360:CDS 40.0%
! TAGGGTTCAGATTGGTCAAT+TGG - tig0025360:60118-60137 Msa1422360:CDS 40.0%
AAAGCACAAAGCCATTGAGA+TGG - tig0025360:60300-60319 Msa1422360:intron 40.0%
GGTTAAATTAGAGGAGCAGA+AGG - tig0025360:60321-60340 Msa1422360:intron 40.0%
GGACAATTGAGGATTTGAAG+CGG - tig0025360:60428-60447 Msa1422360:intron 40.0%
!! AGTTTTCGCACTGATGTCAA+CGG + tig0025360:60497-60516 None:intergenic 40.0%
! TCTACGTCACTTTGATGTAC+TGG - tig0025360:60675-60694 Msa1422360:intron 40.0%
AATCGAAACTGGGGAGTGAT+TGG - tig0025360:59791-59810 Msa1422360:intron 45.0%
AGAATTTAATGCTGGGGCAC+CGG - tig0025360:59815-59834 Msa1422360:intron 45.0%
TACGAGCTTGTATAGCTGAG+AGG - tig0025360:59937-59956 Msa1422360:CDS 45.0%
ACGAGCTTGTATAGCTGAGA+GGG - tig0025360:59938-59957 Msa1422360:CDS 45.0%
TTGTATAGCTGAGAGGGACA+GGG - tig0025360:59944-59963 Msa1422360:CDS 45.0%
! AGAGAAGGGCTGATTCTAAG+AGG - tig0025360:60003-60022 Msa1422360:CDS 45.0%
GGAAGAAAGTTGCCGAAACT+TGG - tig0025360:60024-60043 Msa1422360:CDS 45.0%
TGCCGAAACTTGGAAGTTAC+TGG - tig0025360:60034-60053 Msa1422360:CDS 45.0%
TTAAAGTGGAGAAGGCTGAG+GGG - tig0025360:60093-60112 Msa1422360:CDS 45.0%
TGAGACGTCTGCGTTTAAAG+CGG - tig0025360:60178-60197 Msa1422360:CDS 45.0%
!!! GCTTTTAAAATCCTGCCGTC+TGG + tig0025360:60207-60226 None:intergenic 45.0%
AGGCACTTGCACAAGATAAC+TGG - tig0025360:60341-60360 Msa1422360:intron 45.0%
TGTGGAAGAGAAATGTCGTG+CGG - tig0025360:60372-60391 Msa1422360:intron 45.0%
AGCAGCTAGCAGAAGATAAG+AGG - tig0025360:60407-60426 Msa1422360:intron 45.0%
AAGCACACAAGACCAAGCAA+AGG - tig0025360:60723-60742 Msa1422360:CDS 45.0%
ACACAAGACCAAGCAAAGGT+TGG - tig0025360:60727-60746 Msa1422360:CDS 45.0%
CAGTGAAACCAACCTTTGCT+TGG + tig0025360:60738-60757 None:intergenic 45.0%
AATCGAAACTGGGGAGTGAT+TGG - tig0025360:59791-59810 Msa1422360:intron 45.0%
AGAATTTAATGCTGGGGCAC+CGG - tig0025360:59815-59834 Msa1422360:intron 45.0%
TACGAGCTTGTATAGCTGAG+AGG - tig0025360:59937-59956 Msa1422360:CDS 45.0%
ACGAGCTTGTATAGCTGAGA+GGG - tig0025360:59938-59957 Msa1422360:CDS 45.0%
TTGTATAGCTGAGAGGGACA+GGG - tig0025360:59944-59963 Msa1422360:CDS 45.0%
! AGAGAAGGGCTGATTCTAAG+AGG - tig0025360:60003-60022 Msa1422360:CDS 45.0%
GGAAGAAAGTTGCCGAAACT+TGG - tig0025360:60024-60043 Msa1422360:CDS 45.0%
TGCCGAAACTTGGAAGTTAC+TGG - tig0025360:60034-60053 Msa1422360:CDS 45.0%
TTAAAGTGGAGAAGGCTGAG+GGG - tig0025360:60093-60112 Msa1422360:CDS 45.0%
TGAGACGTCTGCGTTTAAAG+CGG - tig0025360:60178-60197 Msa1422360:CDS 45.0%
!!! GCTTTTAAAATCCTGCCGTC+TGG + tig0025360:60207-60226 None:intergenic 45.0%
AGGCACTTGCACAAGATAAC+TGG - tig0025360:60341-60360 Msa1422360:intron 45.0%
TGTGGAAGAGAAATGTCGTG+CGG - tig0025360:60372-60391 Msa1422360:intron 45.0%
AGCAGCTAGCAGAAGATAAG+AGG - tig0025360:60407-60426 Msa1422360:intron 45.0%
AAGCACACAAGACCAAGCAA+AGG - tig0025360:60723-60742 Msa1422360:CDS 45.0%
ACACAAGACCAAGCAAAGGT+TGG - tig0025360:60727-60746 Msa1422360:CDS 45.0%
CAGTGAAACCAACCTTTGCT+TGG + tig0025360:60738-60757 None:intergenic 45.0%
!! ATAAATTAATATATTTGTAT+TGG - tig0025360:59454-59473 Msa1422360:CDS 5.0%
!! ATAAATTAATATATTTGTAT+TGG - tig0025360:59454-59473 Msa1422360:CDS 5.0%
GACAGACATCTGACACGACA+CGG + tig0025360:59502-59521 None:intergenic 50.0%
GTGTCGTGTCAGATGTCTGT+CGG - tig0025360:59501-59520 Msa1422360:CDS 50.0%
CTGAGTCCATTATTCACCGC+CGG + tig0025360:59837-59856 None:intergenic 50.0%
CTTGTATAGCTGAGAGGGAC+AGG - tig0025360:59943-59962 Msa1422360:CDS 50.0%
! GAGGGGTATAGGGTTCAGAT+TGG - tig0025360:60110-60129 Msa1422360:CDS 50.0%
!! CGGCAGGATTTTAAAAGCGC+AGG - tig0025360:60209-60228 Msa1422360:intron 50.0%
GACAGACATCTGACACGACA+CGG + tig0025360:59502-59521 None:intergenic 50.0%
GTGTCGTGTCAGATGTCTGT+CGG - tig0025360:59501-59520 Msa1422360:CDS 50.0%
CTGAGTCCATTATTCACCGC+CGG + tig0025360:59837-59856 None:intergenic 50.0%
CTTGTATAGCTGAGAGGGAC+AGG - tig0025360:59943-59962 Msa1422360:CDS 50.0%
! GAGGGGTATAGGGTTCAGAT+TGG - tig0025360:60110-60129 Msa1422360:CDS 50.0%
!! CGGCAGGATTTTAAAAGCGC+AGG - tig0025360:60209-60228 Msa1422360:intron 50.0%
!! GATTTTAGCGTCTCCGCCAC+CGG + tig0025360:59313-59332 None:intergenic 55.0%
!! ATTTAATGCTGGGGCACCGG+CGG - tig0025360:59818-59837 Msa1422360:intron 55.0%
TCTGCTCATCGGGGATGCAA+CGG - tig0025360:59882-59901 Msa1422360:CDS 55.0%
GGATGGGGACGAGAATGAGA+AGG - tig0025360:59905-59924 Msa1422360:CDS 55.0%
! TGGAGAAGGCTGAGGGGTAT+AGG - tig0025360:60099-60118 Msa1422360:CDS 55.0%
! GGAGAAGGCTGAGGGGTATA+GGG - tig0025360:60100-60119 Msa1422360:CDS 55.0%
! GACGTCTGCGTTTAAAGCGG+CGG - tig0025360:60181-60200 Msa1422360:CDS 55.0%
!! GATTTTAGCGTCTCCGCCAC+CGG + tig0025360:59313-59332 None:intergenic 55.0%
!! ATTTAATGCTGGGGCACCGG+CGG - tig0025360:59818-59837 Msa1422360:intron 55.0%
TCTGCTCATCGGGGATGCAA+CGG - tig0025360:59882-59901 Msa1422360:CDS 55.0%
GGATGGGGACGAGAATGAGA+AGG - tig0025360:59905-59924 Msa1422360:CDS 55.0%
! TGGAGAAGGCTGAGGGGTAT+AGG - tig0025360:60099-60118 Msa1422360:CDS 55.0%
! GGAGAAGGCTGAGGGGTATA+GGG - tig0025360:60100-60119 Msa1422360:CDS 55.0%
! GACGTCTGCGTTTAAAGCGG+CGG - tig0025360:60181-60200 Msa1422360:CDS 55.0%
CTGCTCATCGGGGATGCAAC+GGG - tig0025360:59883-59902 Msa1422360:CDS 60.0%
TGCTCATCGGGGATGCAACG+GGG - tig0025360:59884-59903 Msa1422360:CDS 60.0%
ATCGGGGATGCAACGGGGAT+GGG - tig0025360:59889-59908 Msa1422360:CDS 60.0%
! CGTTTAAAGCGGCGGCCAGA+CGG - tig0025360:60189-60208 Msa1422360:CDS 60.0%
CTGCTCATCGGGGATGCAAC+GGG - tig0025360:59883-59902 Msa1422360:CDS 60.0%
TGCTCATCGGGGATGCAACG+GGG - tig0025360:59884-59903 Msa1422360:CDS 60.0%
ATCGGGGATGCAACGGGGAT+GGG - tig0025360:59889-59908 Msa1422360:CDS 60.0%
! CGTTTAAAGCGGCGGCCAGA+CGG - tig0025360:60189-60208 Msa1422360:CDS 60.0%
!! GGGGCACCGGCGGTGAATAA+TGG - tig0025360:59828-59847 Msa1422360:intron 65.0%
CATCGGGGATGCAACGGGGA+TGG - tig0025360:59888-59907 Msa1422360:CDS 65.0%
TCGGGGATGCAACGGGGATG+GGG - tig0025360:59890-59909 Msa1422360:CDS 65.0%
!! GGGGCACCGGCGGTGAATAA+TGG - tig0025360:59828-59847 Msa1422360:intron 65.0%
CATCGGGGATGCAACGGGGA+TGG - tig0025360:59888-59907 Msa1422360:CDS 65.0%
TCGGGGATGCAACGGGGATG+GGG - tig0025360:59890-59909 Msa1422360:CDS 65.0%
!! GGACATGGCAGTGCCGGTGG+CGG - tig0025360:59297-59316 Msa1422360:CDS 70.0%
TAAAGCGGCGGCCAGACGGC+AGG - tig0025360:60193-60212 Msa1422360:CDS 70.0%
!! GGACATGGCAGTGCCGGTGG+CGG - tig0025360:59297-59316 Msa1422360:CDS 70.0%
TAAAGCGGCGGCCAGACGGC+AGG - tig0025360:60193-60212 Msa1422360:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0025360 gene 59296 60789 59296 ID=Msa1422360;Name=Msa1422360
tig0025360 mRNA 59296 60789 59296 ID=Msa1422360-mRNA-1;Parent=Msa1422360;Name=Msa1422360-mRNA-1;_AED=0.44;_eAED=0.44;_QI=5|0|0.33|1|1|1|3|0|292
tig0025360 exon 59296 59753 59296 ID=Msa1422360-mRNA-1:exon:2542;Parent=Msa1422360-mRNA-1
tig0025360 exon 59855 60212 59855 ID=Msa1422360-mRNA-1:exon:2541;Parent=Msa1422360-mRNA-1
tig0025360 exon 60722 60789 60722 ID=Msa1422360-mRNA-1:exon:2540;Parent=Msa1422360-mRNA-1
tig0025360 five_prime_UTR 60785 60789 60785 ID=Msa1422360-mRNA-1:five_prime_utr;Parent=Msa1422360-mRNA-1
tig0025360 CDS 60722 60784 60722 ID=Msa1422360-mRNA-1:cds;Parent=Msa1422360-mRNA-1
tig0025360 CDS 59855 60212 59855 ID=Msa1422360-mRNA-1:cds;Parent=Msa1422360-mRNA-1
tig0025360 CDS 59296 59753 59296 ID=Msa1422360-mRNA-1:cds;Parent=Msa1422360-mRNA-1
Gene Sequence

>Msa1422360

ATGGCAGTGCCGGTGGCGGAGACGCTAAAATCTGTCCCCATTATTAACACTTGCTGCGAACAGATTGTTACTTCTGCTCATCGGGGATGCAACGGGGATGGGGACGAGAATGAGAAGGTATTAGGTTTACGAGCTTGTATAGCTGAGAGGGACAGGGAAATCTGTAGATTGAAGGAGCTTTTGGAGAGTGAAAAGAGAAGGGCTGATTCTAAGAGGAAGAAAGTTGCCGAAACTTGGAAGTTACTGGAACAAGAAAAGAATAAGGTAGCGCAAATTGCAAAAATTAAAGTGGAGAAGGCTGAGGGGTATAGGGTTCAGATTGGTCAATTGGAGAAACAAGTTAATGAAGCAAAACAGAAATTGAAATCTGAGACGTCTGCGTTTAAAGCGGCGGCCAGACGGCAGGATTTTAAAAGCGCAGAGGAGCAGAAGGCACTTGCACAAGATAACTGGAACAAGTTTGTGGAAGAGAAATGTCGTGCGGATCAGATGTCTCAGCAGCTAGCAGAAGATAAGAGGACAATTGAGGATTTGAAGCGGAAGATGCTTGAGCTCTCATCCCTGAGAAATCAAACTGAAATGGCCGTTGACATCAGTGCGAAAACTCAAAGTAGTCAATGTTCTAAAGTGAAACATTTAAAAAACAATCTGAACGTTGAAAAGTTACAAACAAAGCATACCAAGCTAAAATACAAGTTAGAAGCAAGTCGTTACAGTATTTTACATCACAAATTAGGTTGTCTAAAGATTGGTTTTGTTCAGCTTCTACGTCACTTTGATGTACTGGATGCATATTTTTTGTCTGTTTCTGGAAGCACACAAGACCAAGCAAAGGTTGGTTTCACTGATGAATTGTTTTCACTTGTATATAATGTTTAG

Protein sequence

>Msa1422360

MAVPVAETLKSVPIINTCCEQIVTSAHRGCNGDGDENEKVLGLRACIAERDREICRLKELLESEKRRADSKRKKVAETWKLLEQEKNKVAQIAKIKVEKAEGYRVQIGQLEKQVNEAKQKLKSETSAFKAAARRQDFKSAEEQKALAQDNWNKFVEEKCRADQMSQQLAEDKRTIEDLKRKMLELSSLRNQTEMAVDISAKTQSSQCSKVKHLKNNLNVEKLQTKHTKLKYKLEASRYSILHHKLGCLKIGFVQLLRHFDVLDAYFLSVSGSTQDQAKVGFTDELFSLVYNV*