AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861930 MtrunA17_Chr5g0442241 81.046 306 24 1 21 292 93 398 7.10e-165 474
Msa0861930 MtrunA17_Chr7g0233411 70.270 222 32 1 105 292 2 223 1.90e-102 300
Msa0861930 MtrunA17_Chr5g0442271 89.147 129 14 0 164 292 1 129 6.78e-77 231
Msa0861930 MtrunA17_Chr2g0292951 38.170 317 132 10 23 278 97 410 1.38e-33 127
Msa0861930 MtrunA17_Chr5g0442261 83.636 55 9 0 32 86 16 70 2.00e-24 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAGATTGAAGGAGCTTT+TGG 0.189291 5_4:+61463289 Msa0861930:CDS
TGGAGAAGGCTGAGGGGTAT+AGG 0.242967 5_4:+61463417 Msa0861930:CDS
CCATTTCAGTTTGATTTCTC+AGG 0.311924 5_4:-61463789 None:intergenic
TGCCGAAACTTGGAAGTTAC+TGG 0.318427 5_4:+61463352 Msa0861930:CDS
TTCCAGTAACTTCCAAGTTT+CGG 0.329335 5_4:-61463354 None:intergenic
GATTGTTACTTCTGCTCATC+GGG 0.347256 5_4:+61463190 Msa0861930:intron
CTGCTCATCGGGGATGCAAC+GGG 0.348667 5_4:+61463201 Msa0861930:CDS
AGGCACTTGCACAAGATAAC+TGG 0.361371 5_4:+61463659 Msa0861930:CDS
ATCGGGGATGCAACGGGGAT+GGG 0.362558 5_4:+61463207 Msa0861930:CDS
TCGGGGATGCAACGGGGATG+GGG 0.364245 5_4:+61463208 Msa0861930:CDS
GACGAGAATGAGAAGGTATT+AGG 0.370192 5_4:+61463230 Msa0861930:CDS
TTCGCAGCAAGTGTTAATAA+TGG 0.380922 5_4:-61462654 None:intergenic
TCGCAGCAAGTGTTAATAAT+GGG 0.386484 5_4:-61462653 None:intergenic
TAGGGTTCAGATTGGTCAAT+TGG 0.393981 5_4:+61463436 Msa0861930:CDS
GGAGAAGGCTGAGGGGTATA+GGG 0.396621 5_4:+61463418 Msa0861930:CDS
GGAAGAAAGTTGCCGAAACT+TGG 0.407982 5_4:+61463342 Msa0861930:CDS
ACTGGAACAAGAAAAGAATA+AGG 0.414135 5_4:+61463370 Msa0861930:CDS
AAATTAGGTTGTCTAAAGAT+TGG 0.418099 5_4:+61463958 Msa0861930:CDS
CATCGGGGATGCAACGGGGA+TGG 0.424317 5_4:+61463206 Msa0861930:CDS
TATTAACACTTGCTGCGAAC+AGG 0.428860 5_4:+61462658 Msa0861930:CDS
CTTGTATAGCTGAGAGGGAC+AGG 0.429483 5_4:+61463261 Msa0861930:CDS
CAGTGAAACCAACCTTTGCT+TGG 0.435279 5_4:-61464053 None:intergenic
AGCAGCTAGCAGAAGATAAG+AGG 0.445083 5_4:+61463725 Msa0861930:CDS
CTCGTCGGACATGGCAGTGC+CGG 0.445452 5_4:+61462607 None:intergenic
CCTGAGAAATCAAACTGAAA+TGG 0.447150 5_4:+61463789 Msa0861930:CDS
TCTACGTCACTTTGATGTAC+TGG 0.457048 5_4:+61463993 Msa0861930:CDS
AGATTGTTACTTCTGCTCAT+CGG 0.461787 5_4:+61463189 Msa0861930:intron
TAAAGCGGCGGCCAGACGGC+AGG 0.494382 5_4:+61463511 Msa0861930:CDS
CATTTCAGTTTGATTTCTCA+GGG 0.502026 5_4:-61463788 None:intergenic
CGTTTAAAGCGGCGGCCAGA+CGG 0.512034 5_4:+61463507 Msa0861930:CDS
AGATAACTGGAACAAGTTTG+TGG 0.518705 5_4:+61463672 Msa0861930:CDS
CAGGGAAATCTGTAGATTGA+AGG 0.527681 5_4:+61463280 Msa0861930:CDS
GGACATGGCAGTGCCGGTGG+CGG 0.536280 5_4:+61462613 Msa0861930:exon
TTTGCGAATCTCGTCGGACA+TGG 0.543542 5_4:+61462598 None:intergenic
GGTTAAATTAGAGGAGCAGA+AGG 0.543577 5_4:+61463639 Msa0861930:intron
AGAGAAGGGCTGATTCTAAG+AGG 0.557315 5_4:+61463321 Msa0861930:CDS
TCTGCTCATCGGGGATGCAA+CGG 0.558030 5_4:+61463200 Msa0861930:CDS
ATTAAAGTGGAGAAGGCTGA+GGG 0.564267 5_4:+61463410 Msa0861930:CDS
GTCGGACATGGCAGTGCCGG+TGG 0.571110 5_4:+61462610 None:intergenic
AGAAGATAAGAGGACAATTG+AGG 0.575896 5_4:+61463735 Msa0861930:CDS
TTTGGAGAGTGAAAAGAGAA+GGG 0.578977 5_4:+61463307 Msa0861930:CDS
GAGGGGTATAGGGTTCAGAT+TGG 0.592717 5_4:+61463428 Msa0861930:CDS
AATTAAAGTGGAGAAGGCTG+AGG 0.598799 5_4:+61463409 Msa0861930:CDS
GACGTCTGCGTTTAAAGCGG+CGG 0.599519 5_4:+61463499 Msa0861930:CDS
ACGAGCTTGTATAGCTGAGA+GGG 0.600679 5_4:+61463256 Msa0861930:CDS
ACACAAGACCAAGCAAAGGT+TGG 0.606510 5_4:+61464045 Msa0861930:CDS
CGCAGCAAGTGTTAATAATG+GGG 0.613845 5_4:-61462652 None:intergenic
TTGTATAGCTGAGAGGGACA+GGG 0.623146 5_4:+61463262 Msa0861930:CDS
GGATGGGGACGAGAATGAGA+AGG 0.624011 5_4:+61463223 Msa0861930:CDS
GGACAATTGAGGATTTGAAG+CGG 0.630311 5_4:+61463746 Msa0861930:CDS
TGCTCATCGGGGATGCAACG+GGG 0.636567 5_4:+61463202 Msa0861930:CDS
TACGAGCTTGTATAGCTGAG+AGG 0.660649 5_4:+61463255 Msa0861930:CDS
ATTGTTACTTCTGCTCATCG+GGG 0.682964 5_4:+61463191 Msa0861930:CDS
TGAGACGTCTGCGTTTAAAG+CGG 0.689651 5_4:+61463496 Msa0861930:CDS
AAGTACACAAGACCAAGCAA+AGG 0.709310 5_4:+61464041 Msa0861930:CDS
TTAAAGTGGAGAAGGCTGAG+GGG 0.712977 5_4:+61463411 Msa0861930:CDS
TGTGGAAGAGAAATGTCGTG+CGG 0.716063 5_4:+61463690 Msa0861930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATTAACGTCAAAAG+GGG - chr5_4:61462702-61462721 None:intergenic 20.0%
!! CAAATATATTAACGTCAAAA+GGG - chr5_4:61462703-61462722 None:intergenic 20.0%
!! TCAAATATATTAACGTCAAA+AGG - chr5_4:61462704-61462723 None:intergenic 20.0%
!! CTGATAGTAATTTGATAAAA+TGG + chr5_4:61462885-61462904 Msa0861930:intron 20.0%
!! CTAAATATAACTATAGTTCA+GGG - chr5_4:61463015-61463034 None:intergenic 20.0%
!!! AGTATTTTACATCACAAATT+AGG + chr5_4:61463943-61463962 Msa0861930:CDS 20.0%
!! AAATATATTAACGTCAAAAG+GGG - chr5_4:61462702-61462721 None:intergenic 20.0%
!! CAAATATATTAACGTCAAAA+GGG - chr5_4:61462703-61462722 None:intergenic 20.0%
!! TCAAATATATTAACGTCAAA+AGG - chr5_4:61462704-61462723 None:intergenic 20.0%
!! CTGATAGTAATTTGATAAAA+TGG + chr5_4:61462885-61462904 Msa0861930:intron 20.0%
!! CTAAATATAACTATAGTTCA+GGG - chr5_4:61463015-61463034 None:intergenic 20.0%
!!! AGTATTTTACATCACAAATT+AGG + chr5_4:61463943-61463962 Msa0861930:CDS 20.0%
! GCTAAATATAACTATAGTTC+AGG - chr5_4:61463016-61463035 None:intergenic 25.0%
! GCAAATTGCAAAAATTAAAG+TGG + chr5_4:61463397-61463416 Msa0861930:CDS 25.0%
!!! TTCTAACTTGTATTTTAGCT+TGG - chr5_4:61463911-61463930 None:intergenic 25.0%
!! AAATTAGGTTGTCTAAAGAT+TGG + chr5_4:61463958-61463977 Msa0861930:CDS 25.0%
! CACTTGTATATAATGTTTAG+CGG + chr5_4:61464088-61464107 Msa0861930:CDS 25.0%
! GCTAAATATAACTATAGTTC+AGG - chr5_4:61463016-61463035 None:intergenic 25.0%
! GCAAATTGCAAAAATTAAAG+TGG + chr5_4:61463397-61463416 Msa0861930:CDS 25.0%
!!! TTCTAACTTGTATTTTAGCT+TGG - chr5_4:61463911-61463930 None:intergenic 25.0%
!! AAATTAGGTTGTCTAAAGAT+TGG + chr5_4:61463958-61463977 Msa0861930:CDS 25.0%
ACGGTTAATGTCAAAAACAT+AGG - chr5_4:61462799-61462818 None:intergenic 30.0%
TTCATAGAGTGGTACATATA+CGG + chr5_4:61462851-61462870 Msa0861930:intron 30.0%
TAATGAAATGCGTTGTAATG+CGG + chr5_4:61463049-61463068 Msa0861930:intron 30.0%
TGATTGGAAGAATTTAATGC+TGG + chr5_4:61463125-61463144 Msa0861930:intron 30.0%
GATTGGAAGAATTTAATGCT+GGG + chr5_4:61463126-61463145 Msa0861930:intron 30.0%
ATTGGAAGAATTTAATGCTG+GGG + chr5_4:61463127-61463146 Msa0861930:intron 30.0%
ACTGGAACAAGAAAAGAATA+AGG + chr5_4:61463370-61463389 Msa0861930:CDS 30.0%
TGCAAAAATTAAAGTGGAGA+AGG + chr5_4:61463403-61463422 Msa0861930:CDS 30.0%
AAAAGCTAACGAAAAGTTGA+AGG + chr5_4:61463588-61463607 Msa0861930:intron 30.0%
CTCTAATTTAACCATCTCAA+TGG - chr5_4:61463632-61463651 None:intergenic 30.0%
CATTGAGATGGTTAAATTAG+AGG + chr5_4:61463630-61463649 Msa0861930:intron 30.0%
! CATTTCAGTTTGATTTCTCA+GGG - chr5_4:61463791-61463810 None:intergenic 30.0%
!!! GCATATTTTTTGTCTGTTTC+TGG + chr5_4:61464018-61464037 Msa0861930:CDS 30.0%
ACGGTTAATGTCAAAAACAT+AGG - chr5_4:61462799-61462818 None:intergenic 30.0%
TTCATAGAGTGGTACATATA+CGG + chr5_4:61462851-61462870 Msa0861930:intron 30.0%
TAATGAAATGCGTTGTAATG+CGG + chr5_4:61463049-61463068 Msa0861930:intron 30.0%
TGATTGGAAGAATTTAATGC+TGG + chr5_4:61463125-61463144 Msa0861930:intron 30.0%
GATTGGAAGAATTTAATGCT+GGG + chr5_4:61463126-61463145 Msa0861930:intron 30.0%
ATTGGAAGAATTTAATGCTG+GGG + chr5_4:61463127-61463146 Msa0861930:intron 30.0%
ACTGGAACAAGAAAAGAATA+AGG + chr5_4:61463370-61463389 Msa0861930:CDS 30.0%
TGCAAAAATTAAAGTGGAGA+AGG + chr5_4:61463403-61463422 Msa0861930:CDS 30.0%
AAAAGCTAACGAAAAGTTGA+AGG + chr5_4:61463588-61463607 Msa0861930:intron 30.0%
CTCTAATTTAACCATCTCAA+TGG - chr5_4:61463632-61463651 None:intergenic 30.0%
CATTGAGATGGTTAAATTAG+AGG + chr5_4:61463630-61463649 Msa0861930:intron 30.0%
! CATTTCAGTTTGATTTCTCA+GGG - chr5_4:61463791-61463810 None:intergenic 30.0%
!!! GCATATTTTTTGTCTGTTTC+TGG + chr5_4:61464018-61464037 Msa0861930:CDS 30.0%
TCGCAGCAAGTGTTAATAAT+GGG - chr5_4:61462656-61462675 None:intergenic 35.0%
TTCGCAGCAAGTGTTAATAA+TGG - chr5_4:61462657-61462676 None:intergenic 35.0%
ATATTAACGTCAAAAGGGGT+AGG - chr5_4:61462698-61462717 None:intergenic 35.0%
GGTTTATATGCTTCATAGAG+TGG + chr5_4:61462840-61462859 Msa0861930:intron 35.0%
TGTGATGTGAAAATCGAAAC+TGG + chr5_4:61463098-61463117 Msa0861930:intron 35.0%
GTGATGTGAAAATCGAAACT+GGG + chr5_4:61463099-61463118 Msa0861930:intron 35.0%
TGATGTGAAAATCGAAACTG+GGG + chr5_4:61463100-61463119 Msa0861930:intron 35.0%
! AGATTGTTACTTCTGCTCAT+CGG + chr5_4:61463189-61463208 Msa0861930:intron 35.0%
!! TTTTGGAGAGTGAAAAGAGA+AGG + chr5_4:61463306-61463325 Msa0861930:CDS 35.0%
TTTGGAGAGTGAAAAGAGAA+GGG + chr5_4:61463307-61463326 Msa0861930:CDS 35.0%
TTCCAGTAACTTCCAAGTTT+CGG - chr5_4:61463357-61463376 None:intergenic 35.0%
AAGAAAAGCCGAGTTAGAAA+TGG + chr5_4:61463564-61463583 Msa0861930:intron 35.0%
!! AGCTTTTGCCATTTCTAACT+CGG - chr5_4:61463575-61463594 None:intergenic 35.0%
AGATAACTGGAACAAGTTTG+TGG + chr5_4:61463672-61463691 Msa0861930:CDS 35.0%
AGAAGATAAGAGGACAATTG+AGG + chr5_4:61463735-61463754 Msa0861930:CDS 35.0%
! CCATTTCAGTTTGATTTCTC+AGG - chr5_4:61463792-61463811 None:intergenic 35.0%
CCTGAGAAATCAAACTGAAA+TGG + chr5_4:61463789-61463808 Msa0861930:CDS 35.0%
! AGTTTTCACACTGATGTCAA+CGG - chr5_4:61463815-61463834 None:intergenic 35.0%
TCGCAGCAAGTGTTAATAAT+GGG - chr5_4:61462656-61462675 None:intergenic 35.0%
TTCGCAGCAAGTGTTAATAA+TGG - chr5_4:61462657-61462676 None:intergenic 35.0%
ATATTAACGTCAAAAGGGGT+AGG - chr5_4:61462698-61462717 None:intergenic 35.0%
GGTTTATATGCTTCATAGAG+TGG + chr5_4:61462840-61462859 Msa0861930:intron 35.0%
TGTGATGTGAAAATCGAAAC+TGG + chr5_4:61463098-61463117 Msa0861930:intron 35.0%
GTGATGTGAAAATCGAAACT+GGG + chr5_4:61463099-61463118 Msa0861930:intron 35.0%
TGATGTGAAAATCGAAACTG+GGG + chr5_4:61463100-61463119 Msa0861930:intron 35.0%
! AGATTGTTACTTCTGCTCAT+CGG + chr5_4:61463189-61463208 Msa0861930:intron 35.0%
!! TTTTGGAGAGTGAAAAGAGA+AGG + chr5_4:61463306-61463325 Msa0861930:CDS 35.0%
TTTGGAGAGTGAAAAGAGAA+GGG + chr5_4:61463307-61463326 Msa0861930:CDS 35.0%
TTCCAGTAACTTCCAAGTTT+CGG - chr5_4:61463357-61463376 None:intergenic 35.0%
AAGAAAAGCCGAGTTAGAAA+TGG + chr5_4:61463564-61463583 Msa0861930:intron 35.0%
!! AGCTTTTGCCATTTCTAACT+CGG - chr5_4:61463575-61463594 None:intergenic 35.0%
AGATAACTGGAACAAGTTTG+TGG + chr5_4:61463672-61463691 Msa0861930:CDS 35.0%
AGAAGATAAGAGGACAATTG+AGG + chr5_4:61463735-61463754 Msa0861930:CDS 35.0%
! CCATTTCAGTTTGATTTCTC+AGG - chr5_4:61463792-61463811 None:intergenic 35.0%
CCTGAGAAATCAAACTGAAA+TGG + chr5_4:61463789-61463808 Msa0861930:CDS 35.0%
! AGTTTTCACACTGATGTCAA+CGG - chr5_4:61463815-61463834 None:intergenic 35.0%
CGCAGCAAGTGTTAATAATG+GGG - chr5_4:61462655-61462674 None:intergenic 40.0%
! TATTAACACTTGCTGCGAAC+AGG + chr5_4:61462658-61462677 Msa0861930:CDS 40.0%
TTGACATACACTGACACATG+TGG - chr5_4:61462927-61462946 None:intergenic 40.0%
TCTAAGTGTTCGAAACGTGT+AGG - chr5_4:61462953-61462972 None:intergenic 40.0%
TGAGCAGAAGTAACAATCTG+AGG - chr5_4:61463188-61463207 None:intergenic 40.0%
! GATTGTTACTTCTGCTCATC+GGG + chr5_4:61463190-61463209 Msa0861930:intron 40.0%
! ATTGTTACTTCTGCTCATCG+GGG + chr5_4:61463191-61463210 Msa0861930:CDS 40.0%
!! GACGAGAATGAGAAGGTATT+AGG + chr5_4:61463230-61463249 Msa0861930:CDS 40.0%
CAGGGAAATCTGTAGATTGA+AGG + chr5_4:61463280-61463299 Msa0861930:CDS 40.0%
! CTGTAGATTGAAGGAGCTTT+TGG + chr5_4:61463289-61463308 Msa0861930:CDS 40.0%
AATTAAAGTGGAGAAGGCTG+AGG + chr5_4:61463409-61463428 Msa0861930:CDS 40.0%
ATTAAAGTGGAGAAGGCTGA+GGG + chr5_4:61463410-61463429 Msa0861930:CDS 40.0%
! TAGGGTTCAGATTGGTCAAT+TGG + chr5_4:61463436-61463455 Msa0861930:CDS 40.0%
AAAGCACAAAGCCATTGAGA+TGG + chr5_4:61463618-61463637 Msa0861930:intron 40.0%
GGTTAAATTAGAGGAGCAGA+AGG + chr5_4:61463639-61463658 Msa0861930:intron 40.0%
GGACAATTGAGGATTTGAAG+CGG + chr5_4:61463746-61463765 Msa0861930:CDS 40.0%
! TCTACGTCACTTTGATGTAC+TGG + chr5_4:61463993-61464012 Msa0861930:CDS 40.0%
AAGTACACAAGACCAAGCAA+AGG + chr5_4:61464041-61464060 Msa0861930:CDS 40.0%
CGCAGCAAGTGTTAATAATG+GGG - chr5_4:61462655-61462674 None:intergenic 40.0%
! TATTAACACTTGCTGCGAAC+AGG + chr5_4:61462658-61462677 Msa0861930:CDS 40.0%
TTGACATACACTGACACATG+TGG - chr5_4:61462927-61462946 None:intergenic 40.0%
TCTAAGTGTTCGAAACGTGT+AGG - chr5_4:61462953-61462972 None:intergenic 40.0%
TGAGCAGAAGTAACAATCTG+AGG - chr5_4:61463188-61463207 None:intergenic 40.0%
! GATTGTTACTTCTGCTCATC+GGG + chr5_4:61463190-61463209 Msa0861930:intron 40.0%
! ATTGTTACTTCTGCTCATCG+GGG + chr5_4:61463191-61463210 Msa0861930:CDS 40.0%
!! GACGAGAATGAGAAGGTATT+AGG + chr5_4:61463230-61463249 Msa0861930:CDS 40.0%
CAGGGAAATCTGTAGATTGA+AGG + chr5_4:61463280-61463299 Msa0861930:CDS 40.0%
! CTGTAGATTGAAGGAGCTTT+TGG + chr5_4:61463289-61463308 Msa0861930:CDS 40.0%
AATTAAAGTGGAGAAGGCTG+AGG + chr5_4:61463409-61463428 Msa0861930:CDS 40.0%
ATTAAAGTGGAGAAGGCTGA+GGG + chr5_4:61463410-61463429 Msa0861930:CDS 40.0%
! TAGGGTTCAGATTGGTCAAT+TGG + chr5_4:61463436-61463455 Msa0861930:CDS 40.0%
AAAGCACAAAGCCATTGAGA+TGG + chr5_4:61463618-61463637 Msa0861930:intron 40.0%
GGTTAAATTAGAGGAGCAGA+AGG + chr5_4:61463639-61463658 Msa0861930:intron 40.0%
GGACAATTGAGGATTTGAAG+CGG + chr5_4:61463746-61463765 Msa0861930:CDS 40.0%
! TCTACGTCACTTTGATGTAC+TGG + chr5_4:61463993-61464012 Msa0861930:CDS 40.0%
AAGTACACAAGACCAAGCAA+AGG + chr5_4:61464041-61464060 Msa0861930:CDS 40.0%
CAAAGACATCTGACACGACA+CGG - chr5_4:61462818-61462837 None:intergenic 45.0%
GTCGTGTCAGATGTCTTTGT+CGG + chr5_4:61462819-61462838 Msa0861930:intron 45.0%
AATCGAAACTGGGGAGTGAT+TGG + chr5_4:61463109-61463128 Msa0861930:intron 45.0%
AGAATTTAATGCTGGGGCAC+CGG + chr5_4:61463133-61463152 Msa0861930:intron 45.0%
TACGAGCTTGTATAGCTGAG+AGG + chr5_4:61463255-61463274 Msa0861930:CDS 45.0%
ACGAGCTTGTATAGCTGAGA+GGG + chr5_4:61463256-61463275 Msa0861930:CDS 45.0%
TTGTATAGCTGAGAGGGACA+GGG + chr5_4:61463262-61463281 Msa0861930:CDS 45.0%
! AGAGAAGGGCTGATTCTAAG+AGG + chr5_4:61463321-61463340 Msa0861930:CDS 45.0%
GGAAGAAAGTTGCCGAAACT+TGG + chr5_4:61463342-61463361 Msa0861930:CDS 45.0%
TGCCGAAACTTGGAAGTTAC+TGG + chr5_4:61463352-61463371 Msa0861930:CDS 45.0%
TTAAAGTGGAGAAGGCTGAG+GGG + chr5_4:61463411-61463430 Msa0861930:CDS 45.0%
TGAGACGTCTGCGTTTAAAG+CGG + chr5_4:61463496-61463515 Msa0861930:CDS 45.0%
!!! GCTTTTAAAATCCTGCCGTC+TGG - chr5_4:61463525-61463544 None:intergenic 45.0%
AGGCACTTGCACAAGATAAC+TGG + chr5_4:61463659-61463678 Msa0861930:CDS 45.0%
TGTGGAAGAGAAATGTCGTG+CGG + chr5_4:61463690-61463709 Msa0861930:CDS 45.0%
AGCAGCTAGCAGAAGATAAG+AGG + chr5_4:61463725-61463744 Msa0861930:CDS 45.0%
ACACAAGACCAAGCAAAGGT+TGG + chr5_4:61464045-61464064 Msa0861930:CDS 45.0%
CAGTGAAACCAACCTTTGCT+TGG - chr5_4:61464056-61464075 None:intergenic 45.0%
CAAAGACATCTGACACGACA+CGG - chr5_4:61462818-61462837 None:intergenic 45.0%
GTCGTGTCAGATGTCTTTGT+CGG + chr5_4:61462819-61462838 Msa0861930:intron 45.0%
AATCGAAACTGGGGAGTGAT+TGG + chr5_4:61463109-61463128 Msa0861930:intron 45.0%
AGAATTTAATGCTGGGGCAC+CGG + chr5_4:61463133-61463152 Msa0861930:intron 45.0%
TACGAGCTTGTATAGCTGAG+AGG + chr5_4:61463255-61463274 Msa0861930:CDS 45.0%
ACGAGCTTGTATAGCTGAGA+GGG + chr5_4:61463256-61463275 Msa0861930:CDS 45.0%
TTGTATAGCTGAGAGGGACA+GGG + chr5_4:61463262-61463281 Msa0861930:CDS 45.0%
! AGAGAAGGGCTGATTCTAAG+AGG + chr5_4:61463321-61463340 Msa0861930:CDS 45.0%
GGAAGAAAGTTGCCGAAACT+TGG + chr5_4:61463342-61463361 Msa0861930:CDS 45.0%
TGCCGAAACTTGGAAGTTAC+TGG + chr5_4:61463352-61463371 Msa0861930:CDS 45.0%
TTAAAGTGGAGAAGGCTGAG+GGG + chr5_4:61463411-61463430 Msa0861930:CDS 45.0%
TGAGACGTCTGCGTTTAAAG+CGG + chr5_4:61463496-61463515 Msa0861930:CDS 45.0%
!!! GCTTTTAAAATCCTGCCGTC+TGG - chr5_4:61463525-61463544 None:intergenic 45.0%
AGGCACTTGCACAAGATAAC+TGG + chr5_4:61463659-61463678 Msa0861930:CDS 45.0%
TGTGGAAGAGAAATGTCGTG+CGG + chr5_4:61463690-61463709 Msa0861930:CDS 45.0%
AGCAGCTAGCAGAAGATAAG+AGG + chr5_4:61463725-61463744 Msa0861930:CDS 45.0%
ACACAAGACCAAGCAAAGGT+TGG + chr5_4:61464045-61464064 Msa0861930:CDS 45.0%
CAGTGAAACCAACCTTTGCT+TGG - chr5_4:61464056-61464075 None:intergenic 45.0%
!! ATAAATTAATATATTTGTAT+TGG + chr5_4:61462770-61462789 Msa0861930:intron 5.0%
!! ATAAATTAATATATTTGTAT+TGG + chr5_4:61462770-61462789 Msa0861930:intron 5.0%
CTGAGTCCATTATTCACCGC+CGG - chr5_4:61463155-61463174 None:intergenic 50.0%
CTTGTATAGCTGAGAGGGAC+AGG + chr5_4:61463261-61463280 Msa0861930:CDS 50.0%
! GAGGGGTATAGGGTTCAGAT+TGG + chr5_4:61463428-61463447 Msa0861930:CDS 50.0%
!! CGGCAGGATTTTAAAAGCGC+AGG + chr5_4:61463527-61463546 Msa0861930:CDS 50.0%
CTGAGTCCATTATTCACCGC+CGG - chr5_4:61463155-61463174 None:intergenic 50.0%
CTTGTATAGCTGAGAGGGAC+AGG + chr5_4:61463261-61463280 Msa0861930:CDS 50.0%
! GAGGGGTATAGGGTTCAGAT+TGG + chr5_4:61463428-61463447 Msa0861930:CDS 50.0%
!! CGGCAGGATTTTAAAAGCGC+AGG + chr5_4:61463527-61463546 Msa0861930:CDS 50.0%
!! GATTTTAGCGTCTCCGCCAC+CGG - chr5_4:61462629-61462648 None:intergenic 55.0%
!! ATTTAATGCTGGGGCACCGG+CGG + chr5_4:61463136-61463155 Msa0861930:intron 55.0%
TCTGCTCATCGGGGATGCAA+CGG + chr5_4:61463200-61463219 Msa0861930:CDS 55.0%
GGATGGGGACGAGAATGAGA+AGG + chr5_4:61463223-61463242 Msa0861930:CDS 55.0%
! TGGAGAAGGCTGAGGGGTAT+AGG + chr5_4:61463417-61463436 Msa0861930:CDS 55.0%
! GGAGAAGGCTGAGGGGTATA+GGG + chr5_4:61463418-61463437 Msa0861930:CDS 55.0%
! GACGTCTGCGTTTAAAGCGG+CGG + chr5_4:61463499-61463518 Msa0861930:CDS 55.0%
!! GATTTTAGCGTCTCCGCCAC+CGG - chr5_4:61462629-61462648 None:intergenic 55.0%
!! ATTTAATGCTGGGGCACCGG+CGG + chr5_4:61463136-61463155 Msa0861930:intron 55.0%
TCTGCTCATCGGGGATGCAA+CGG + chr5_4:61463200-61463219 Msa0861930:CDS 55.0%
GGATGGGGACGAGAATGAGA+AGG + chr5_4:61463223-61463242 Msa0861930:CDS 55.0%
! TGGAGAAGGCTGAGGGGTAT+AGG + chr5_4:61463417-61463436 Msa0861930:CDS 55.0%
! GGAGAAGGCTGAGGGGTATA+GGG + chr5_4:61463418-61463437 Msa0861930:CDS 55.0%
! GACGTCTGCGTTTAAAGCGG+CGG + chr5_4:61463499-61463518 Msa0861930:CDS 55.0%
CTGCTCATCGGGGATGCAAC+GGG + chr5_4:61463201-61463220 Msa0861930:CDS 60.0%
TGCTCATCGGGGATGCAACG+GGG + chr5_4:61463202-61463221 Msa0861930:CDS 60.0%
ATCGGGGATGCAACGGGGAT+GGG + chr5_4:61463207-61463226 Msa0861930:CDS 60.0%
! CGTTTAAAGCGGCGGCCAGA+CGG + chr5_4:61463507-61463526 Msa0861930:CDS 60.0%
CTGCTCATCGGGGATGCAAC+GGG + chr5_4:61463201-61463220 Msa0861930:CDS 60.0%
TGCTCATCGGGGATGCAACG+GGG + chr5_4:61463202-61463221 Msa0861930:CDS 60.0%
ATCGGGGATGCAACGGGGAT+GGG + chr5_4:61463207-61463226 Msa0861930:CDS 60.0%
! CGTTTAAAGCGGCGGCCAGA+CGG + chr5_4:61463507-61463526 Msa0861930:CDS 60.0%
!! GGGGCACCGGCGGTGAATAA+TGG + chr5_4:61463146-61463165 Msa0861930:intron 65.0%
CATCGGGGATGCAACGGGGA+TGG + chr5_4:61463206-61463225 Msa0861930:CDS 65.0%
TCGGGGATGCAACGGGGATG+GGG + chr5_4:61463208-61463227 Msa0861930:CDS 65.0%
!! GGGGCACCGGCGGTGAATAA+TGG + chr5_4:61463146-61463165 Msa0861930:intron 65.0%
CATCGGGGATGCAACGGGGA+TGG + chr5_4:61463206-61463225 Msa0861930:CDS 65.0%
TCGGGGATGCAACGGGGATG+GGG + chr5_4:61463208-61463227 Msa0861930:CDS 65.0%
!! GGACATGGCAGTGCCGGTGG+CGG + chr5_4:61462613-61462632 Msa0861930:exon 70.0%
TAAAGCGGCGGCCAGACGGC+AGG + chr5_4:61463511-61463530 Msa0861930:CDS 70.0%
!! GGACATGGCAGTGCCGGTGG+CGG + chr5_4:61462613-61462632 Msa0861930:exon 70.0%
TAAAGCGGCGGCCAGACGGC+AGG + chr5_4:61463511-61463530 Msa0861930:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61462612 61464107 61462612 ID=Msa0861930;Name=Msa0861930
chr5_4 mRNA 61462612 61464107 61462612 ID=Msa0861930-mRNA-1;Parent=Msa0861930;Name=Msa0861930-mRNA-1;_AED=0.44;_eAED=0.45;_QI=5|0|0.33|1|1|1|3|0|292
chr5_4 exon 61462612 61462679 61462612 ID=Msa0861930-mRNA-1:exon:19053;Parent=Msa0861930-mRNA-1
chr5_4 exon 61463191 61463548 61463191 ID=Msa0861930-mRNA-1:exon:19054;Parent=Msa0861930-mRNA-1
chr5_4 exon 61463650 61464107 61463650 ID=Msa0861930-mRNA-1:exon:19055;Parent=Msa0861930-mRNA-1
chr5_4 five_prime_UTR 61462612 61462616 61462612 ID=Msa0861930-mRNA-1:five_prime_utr;Parent=Msa0861930-mRNA-1
chr5_4 CDS 61462617 61462679 61462617 ID=Msa0861930-mRNA-1:cds;Parent=Msa0861930-mRNA-1
chr5_4 CDS 61463191 61463548 61463191 ID=Msa0861930-mRNA-1:cds;Parent=Msa0861930-mRNA-1
chr5_4 CDS 61463650 61464107 61463650 ID=Msa0861930-mRNA-1:cds;Parent=Msa0861930-mRNA-1
Gene Sequence

>Msa0861930

ATGGCAGTGCCGGTGGCGGAGACGCTAAAATCTGTCCCCATTATTAACACTTGCTGCGAACAGATTGTTACTTCTGCTCATCGGGGATGCAACGGGGATGGGGACGAGAATGAGAAGGTATTAGGTTTACGAGCTTGTATAGCTGAGAGGGACAGGGAAATCTGTAGATTGAAGGAGCTTTTGGAGAGTGAAAAGAGAAGGGCTGATTCTAAGAGGAAGAAAGTTGCCGAAACTTGGAAGTTACTGGAACAAGAAAAGAATAAGGTAGCGCAAATTGCAAAAATTAAAGTGGAGAAGGCTGAGGGGTATAGGGTTCAGATTGGTCAATTGGAGAAACAAGTTAGTGAAGCAAAACAGAAATTGAAATCTGAGACGTCTGCGTTTAAAGCGGCGGCCAGACGGCAGGATTTTAAAAGCGCAGAGGAGCAGAAGGCACTTGCACAAGATAACTGGAACAAGTTTGTGGAAGAGAAATGTCGTGCGGATCAGATGTCTCAGCAGCTAGCAGAAGATAAGAGGACAATTGAGGATTTGAAGCGGAAGATGCTTGAGCTCTCATCCCTGAGAAATCAAACTGAAATGGCCGTTGACATCAGTGTGAAAACTCAAAGTAGTCAATGTTCTAAAGTGAAACATTTGAAAAACAATCTGAACGTTGAAAAGTTACAAACAAAGCATACCAAGCTAAAATACAAGTTAGAAGCAAGTCGTTACAGTATTTTACATCACAAATTAGGTTGTCTAAAGATTGGTTTTGTTCAGCTTCTACGTCACTTTGATGTACTGGATGCATATTTTTTGTCTGTTTCTGGAAGTACACAAGACCAAGCAAAGGTTGGTTTCACTGATGAATTGTTTTCACTTGTATATAATGTTTAG

Protein sequence

>Msa0861930

MAVPVAETLKSVPIINTCCEQIVTSAHRGCNGDGDENEKVLGLRACIAERDREICRLKELLESEKRRADSKRKKVAETWKLLEQEKNKVAQIAKIKVEKAEGYRVQIGQLEKQVSEAKQKLKSETSAFKAAARRQDFKSAEEQKALAQDNWNKFVEEKCRADQMSQQLAEDKRTIEDLKRKMLELSSLRNQTEMAVDISVKTQSSQCSKVKHLKNNLNVEKLQTKHTKLKYKLEASRYSILHHKLGCLKIGFVQLLRHFDVLDAYFLSVSGSTQDQAKVGFTDELFSLVYNV*