Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41435.t1 | XP_013469663.1 | 100 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 1.20E-29 | 139 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41435.t1 | O03982 | 53.4 | 73 | 32 | 2 | 4 | 75 | 2 | 73 | 3.1e-10 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41435.t1 | G8A218 | 100.0 | 76 | 0 | 0 | 1 | 76 | 1 | 76 | 8.6e-30 | 139.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene41435 | 0.909752 | 4.02E-82 | -1.69E-46 |
| MS.gene049369 | MS.gene41435 | 0.880705 | 4.41E-70 | -1.69E-46 |
| MS.gene049396 | MS.gene41435 | 0.861449 | 1.02E-63 | -1.69E-46 |
| MS.gene049488 | MS.gene41435 | 0.810014 | 1.42E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene41435 | 0.804399 | 2.20E-49 | -1.69E-46 |
| MS.gene049662 | MS.gene41435 | 0.803992 | 2.67E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene41435 | 0.816328 | 5.85E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene41435 | 0.810622 | 1.05E-50 | -1.69E-46 |
| MS.gene050122 | MS.gene41435 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene41435 | 0.844711 | 6.38E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene41435 | 0.837655 | 4.57E-57 | -1.69E-46 |
| MS.gene050397 | MS.gene41435 | 0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene41435 | 0.81304 | 3.13E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene41435 | -0.824494 | 7.83E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene41435 | 0.803286 | 3.75E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene41435 | 0.816956 | 4.23E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene41435 | 0.820547 | 6.48E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene41435 | 0.823348 | 1.45E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene41435 | 0.91419 | 2.56E-84 | -1.69E-46 |
| MS.gene050971 | MS.gene41435 | 0.880159 | 6.91E-70 | -1.69E-46 |
| MS.gene05105 | MS.gene41435 | 0.878465 | 2.75E-69 | -1.69E-46 |
| MS.gene051360 | MS.gene41435 | 0.859277 | 4.62E-63 | -1.69E-46 |
| MS.gene051387 | MS.gene41435 | 0.827382 | 1.61E-54 | -1.69E-46 |
| MS.gene051521 | MS.gene41435 | 0.838642 | 2.55E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene41435 | 0.831977 | 1.23E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene41435 | 0.816251 | 6.09E-52 | -1.69E-46 |
| MS.gene051692 | MS.gene41435 | 0.813075 | 3.08E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene41435 | 0.810034 | 1.41E-50 | -1.69E-46 |
| MS.gene051874 | MS.gene41435 | 0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene41435 | -0.821426 | 4.06E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene41435 | 0.84318 | 1.64E-58 | -1.69E-46 |
| MS.gene052135 | MS.gene41435 | 0.813782 | 2.15E-51 | -1.69E-46 |
| MS.gene052136 | MS.gene41435 | 0.823604 | 1.27E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene41435 | 0.908228 | 2.15E-81 | -1.69E-46 |
| MS.gene052253 | MS.gene41435 | 0.864571 | 1.10E-64 | -1.69E-46 |
| MS.gene052310 | MS.gene41435 | 0.837144 | 6.18E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene41435 | 0.866718 | 2.32E-65 | -1.69E-46 |
| MS.gene052346 | MS.gene41435 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene41435 | 0.867561 | 1.25E-65 | -1.69E-46 |
| MS.gene052421 | MS.gene41435 | 0.846185 | 2.55E-59 | -1.69E-46 |
| MS.gene052481 | MS.gene41435 | 0.811834 | 5.74E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene41435 | 0.813972 | 1.95E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene41435 | 0.855685 | 5.34E-62 | -1.69E-46 |
| MS.gene052982 | MS.gene41435 | 0.800977 | 1.12E-48 | -1.69E-46 |
| MS.gene052999 | MS.gene41435 | 0.809777 | 1.60E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene41435 | 0.808662 | 2.77E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene41435 | 0.804245 | 2.37E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene41435 | 0.831475 | 1.63E-55 | -1.69E-46 |
| MS.gene05316 | MS.gene41435 | 0.886656 | 2.83E-72 | -1.69E-46 |
| MS.gene053209 | MS.gene41435 | 0.837205 | 5.96E-57 | -1.69E-46 |
| MS.gene053449 | MS.gene41435 | 0.892624 | 1.34E-74 | -1.69E-46 |
| MS.gene053557 | MS.gene41435 | 0.813886 | 2.04E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene41435 | 0.879838 | 8.98E-70 | -1.69E-46 |
| MS.gene053813 | MS.gene41435 | 0.837697 | 4.46E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene41435 | 0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene41435 | 0.8689 | 4.63E-66 | -1.69E-46 |
| MS.gene053928 | MS.gene41435 | 0.816039 | 6.79E-52 | -1.69E-46 |
| MS.gene054010 | MS.gene41435 | 0.808002 | 3.84E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene41435 | 0.816603 | 5.08E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene41435 | 0.810148 | 1.33E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene41435 | 0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene41435 | 0.827332 | 1.66E-54 | -1.69E-46 |
| MS.gene054183 | MS.gene41435 | 0.837663 | 4.55E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene41435 | 0.865278 | 6.63E-65 | -1.69E-46 |
| MS.gene054556 | MS.gene41435 | 0.843259 | 1.56E-58 | -1.69E-46 |
| MS.gene054955 | MS.gene41435 | 0.850896 | 1.26E-60 | -1.69E-46 |
| MS.gene05505 | MS.gene41435 | 0.840339 | 9.23E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene41435 | 0.890186 | 1.24E-73 | -1.69E-46 |
| MS.gene055277 | MS.gene41435 | 0.805382 | 1.37E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene41435 | 0.827961 | 1.17E-54 | -1.69E-46 |
| MS.gene055533 | MS.gene41435 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene41435 | 0.814999 | 1.16E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene41435 | 0.831883 | 1.30E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene41435 | 0.822273 | 2.59E-53 | -1.69E-46 |
| MS.gene055666 | MS.gene41435 | 0.814917 | 1.21E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene41435 | 0.846222 | 2.49E-59 | -1.69E-46 |
| MS.gene055744 | MS.gene41435 | 0.854715 | 1.02E-61 | -1.69E-46 |
| MS.gene055859 | MS.gene41435 | 0.804698 | 1.91E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene41435 | 0.865962 | 4.04E-65 | -1.69E-46 |
| MS.gene055911 | MS.gene41435 | 0.864455 | 1.20E-64 | -1.69E-46 |
| MS.gene05592 | MS.gene41435 | 0.816634 | 5.00E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene41435 | 0.824158 | 9.39E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene41435 | 0.841426 | 4.79E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene41435 | 0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene41435 | 0.873703 | 1.20E-67 | -1.69E-46 |
| MS.gene056511 | MS.gene41435 | 0.893187 | 7.94E-75 | -1.69E-46 |
| MS.gene056514 | MS.gene41435 | 0.808588 | 2.88E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene41435 | 0.821621 | 3.66E-53 | -1.69E-46 |
| MS.gene05664 | MS.gene41435 | 0.821141 | 4.73E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene41435 | 0.843638 | 1.24E-58 | -1.69E-46 |
| MS.gene05666 | MS.gene41435 | 0.820112 | 8.15E-53 | -1.69E-46 |
| MS.gene056719 | MS.gene41435 | 0.802089 | 6.62E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene41435 | 0.831732 | 1.41E-55 | -1.69E-46 |
| MS.gene056833 | MS.gene41435 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene056876 | MS.gene41435 | 0.822129 | 2.79E-53 | -1.69E-46 |
| MS.gene056899 | MS.gene41435 | -0.804049 | 2.60E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene41435 | 0.818703 | 1.71E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene41435 | 0.809981 | 1.45E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene41435 | 0.822767 | 1.99E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene41435 | 0.872039 | 4.32E-67 | -1.69E-46 |
| MS.gene057146 | MS.gene41435 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene41435 | 0.825466 | 4.62E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene41435 | 0.875848 | 2.23E-68 | -1.69E-46 |
| MS.gene057448 | MS.gene41435 | 0.868852 | 4.80E-66 | -1.69E-46 |
| MS.gene057449 | MS.gene41435 | 0.866306 | 3.14E-65 | -1.69E-46 |
| MS.gene057450 | MS.gene41435 | 0.863296 | 2.75E-64 | -1.69E-46 |
| MS.gene057476 | MS.gene41435 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene057537 | MS.gene41435 | 0.875459 | 3.03E-68 | -1.69E-46 |
| MS.gene057609 | MS.gene41435 | 0.804528 | 2.07E-49 | -1.69E-46 |
| MS.gene057610 | MS.gene41435 | 0.835915 | 1.27E-56 | -1.69E-46 |
| MS.gene057734 | MS.gene41435 | 0.861715 | 8.44E-64 | -1.69E-46 |
| MS.gene057749 | MS.gene41435 | 0.850298 | 1.86E-60 | -1.69E-46 |
| MS.gene057796 | MS.gene41435 | 0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene41435 | 0.85434 | 1.31E-61 | -1.69E-46 |
| MS.gene057856 | MS.gene41435 | 0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene41435 | 0.801391 | 9.20E-49 | -1.69E-46 |
| MS.gene057927 | MS.gene41435 | 0.841637 | 4.21E-58 | -1.69E-46 |
| MS.gene058002 | MS.gene41435 | 0.820999 | 5.10E-53 | -1.69E-46 |
| MS.gene058007 | MS.gene41435 | 0.872836 | 2.34E-67 | -1.69E-46 |
| MS.gene058075 | MS.gene41435 | 0.860272 | 2.32E-63 | -1.69E-46 |
| MS.gene058082 | MS.gene41435 | 0.822786 | 1.97E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene41435 | 0.820934 | 5.28E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene41435 | 0.832935 | 7.11E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene41435 | 0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene41435 | 0.834564 | 2.79E-56 | -1.69E-46 |
| MS.gene058376 | MS.gene41435 | 0.826044 | 3.37E-54 | -1.69E-46 |
| MS.gene05842 | MS.gene41435 | 0.819674 | 1.03E-52 | -1.69E-46 |
| MS.gene058444 | MS.gene41435 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene058459 | MS.gene41435 | 0.806386 | 8.44E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene41435 | 0.829748 | 4.33E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene41435 | 0.848065 | 7.77E-60 | -1.69E-46 |
| MS.gene058790 | MS.gene41435 | 0.805646 | 1.21E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene41435 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene41435 | 0.88044 | 5.48E-70 | -1.69E-46 |
| MS.gene058948 | MS.gene41435 | 0.83539 | 1.73E-56 | -1.69E-46 |
| MS.gene058949 | MS.gene41435 | 0.835872 | 1.30E-56 | -1.69E-46 |
| MS.gene058995 | MS.gene41435 | 0.820272 | 7.49E-53 | -1.69E-46 |
| MS.gene059011 | MS.gene41435 | 0.818465 | 1.93E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene41435 | 0.859614 | 3.66E-63 | -1.69E-46 |
| MS.gene059082 | MS.gene41435 | 0.814047 | 1.88E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene41435 | 0.840379 | 9.01E-58 | -1.69E-46 |
| MS.gene059294 | MS.gene41435 | 0.850694 | 1.44E-60 | -1.69E-46 |
| MS.gene059366 | MS.gene41435 | 0.898299 | 6.08E-77 | -1.69E-46 |
| MS.gene059368 | MS.gene41435 | 0.836689 | 8.08E-57 | -1.69E-46 |
| MS.gene059402 | MS.gene41435 | -0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene41435 | 0.878686 | 2.30E-69 | -1.69E-46 |
| MS.gene059455 | MS.gene41435 | 0.823647 | 1.24E-53 | -1.69E-46 |
| MS.gene059462 | MS.gene41435 | 0.829081 | 6.28E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene41435 | 0.823135 | 1.63E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene41435 | 0.869837 | 2.29E-66 | -1.69E-46 |
| MS.gene059676 | MS.gene41435 | 0.852912 | 3.38E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene41435 | 0.890938 | 6.26E-74 | -1.69E-46 |
| MS.gene059692 | MS.gene41435 | 0.876729 | 1.11E-68 | -1.69E-46 |
| MS.gene059695 | MS.gene41435 | 0.878324 | 3.08E-69 | -1.69E-46 |
| MS.gene059711 | MS.gene41435 | 0.847609 | 1.04E-59 | -1.69E-46 |
| MS.gene059788 | MS.gene41435 | 0.812378 | 4.37E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene41435 | 0.918222 | 2.03E-86 | -1.69E-46 |
| MS.gene05984 | MS.gene41435 | 0.832052 | 1.18E-55 | -1.69E-46 |
| MS.gene05986 | MS.gene41435 | 0.802553 | 5.31E-49 | -1.69E-46 |
| MS.gene059876 | MS.gene41435 | 0.834808 | 2.42E-56 | -1.69E-46 |
| MS.gene059933 | MS.gene41435 | 0.836428 | 9.41E-57 | -1.69E-46 |
| MS.gene060247 | MS.gene41435 | 0.832647 | 8.39E-56 | -1.69E-46 |
| MS.gene060372 | MS.gene41435 | 0.84394 | 1.03E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene41435 | 0.804269 | 2.34E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene41435 | 0.854713 | 1.02E-61 | -1.69E-46 |
| MS.gene060495 | MS.gene41435 | 0.85292 | 3.36E-61 | -1.69E-46 |
| MS.gene060496 | MS.gene41435 | 0.815113 | 1.09E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene41435 | 0.843724 | 1.18E-58 | -1.69E-46 |
| MS.gene060818 | MS.gene41435 | 0.824756 | 6.79E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene41435 | 0.82244 | 2.37E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene41435 | 0.887109 | 1.90E-72 | -1.69E-46 |
| MS.gene060986 | MS.gene41435 | 0.812246 | 4.67E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene41435 | 0.844392 | 7.78E-59 | -1.69E-46 |
| MS.gene061049 | MS.gene41435 | 0.848431 | 6.16E-60 | -1.69E-46 |
| MS.gene061051 | MS.gene41435 | -0.869224 | 3.63E-66 | -1.69E-46 |
| MS.gene061154 | MS.gene41435 | 0.881034 | 3.35E-70 | -1.69E-46 |
| MS.gene061159 | MS.gene41435 | 0.816687 | 4.86E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41435.t1 | MTR_1g100587 | 100.000 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 8.53e-34 | 112 |
| MS.gene41435.t1 | MTR_6g045257 | 87.671 | 73 | 9 | 0 | 4 | 76 | 3 | 75 | 5.66e-26 | 93.2 |
| MS.gene41435.t1 | MTR_8g098915 | 52.113 | 71 | 33 | 1 | 5 | 75 | 3 | 72 | 1.07e-17 | 72.8 |
| MS.gene41435.t1 | MTR_6g049260 | 45.333 | 75 | 40 | 1 | 5 | 79 | 3 | 76 | 1.69e-15 | 66.6 |
| MS.gene41435.t1 | MTR_6g051680 | 47.297 | 74 | 38 | 1 | 3 | 76 | 1 | 73 | 7.67e-15 | 65.1 |
| MS.gene41435.t1 | MTR_6g049320 | 48.571 | 70 | 35 | 1 | 4 | 73 | 32 | 100 | 3.12e-14 | 64.3 |
| MS.gene41435.t1 | MTR_1g099810 | 47.945 | 73 | 37 | 1 | 3 | 75 | 1 | 72 | 4.70e-14 | 63.5 |
| MS.gene41435.t1 | MTR_1g099800 | 47.945 | 73 | 37 | 1 | 3 | 75 | 1 | 72 | 6.64e-14 | 63.2 |
| MS.gene41435.t1 | MTR_6g049320 | 47.826 | 69 | 35 | 1 | 5 | 73 | 3 | 70 | 6.75e-14 | 62.8 |
| MS.gene41435.t1 | MTR_6g049280 | 47.143 | 70 | 36 | 1 | 4 | 73 | 32 | 100 | 7.91e-14 | 63.5 |
| MS.gene41435.t1 | MTR_6g049280 | 46.377 | 69 | 36 | 1 | 5 | 73 | 3 | 70 | 1.39e-13 | 62.0 |
| MS.gene41435.t1 | MTR_7g079110 | 49.275 | 69 | 34 | 1 | 3 | 71 | 1 | 68 | 1.64e-13 | 62.8 |
| MS.gene41435.t1 | MTR_3g434960 | 42.105 | 76 | 43 | 1 | 5 | 80 | 3 | 77 | 2.59e-13 | 60.8 |
| MS.gene41435.t1 | MTR_7g451210 | 43.243 | 74 | 41 | 1 | 5 | 78 | 3 | 75 | 2.89e-13 | 60.8 |
| MS.gene41435.t1 | MTR_3g434890 | 42.105 | 76 | 43 | 1 | 5 | 80 | 3 | 77 | 3.01e-13 | 60.8 |
| MS.gene41435.t1 | MTR_1g099640 | 52.055 | 73 | 34 | 1 | 4 | 76 | 2 | 73 | 4.55e-13 | 60.8 |
| MS.gene41435.t1 | MTR_6g051690 | 44.595 | 74 | 40 | 1 | 3 | 76 | 1 | 73 | 9.05e-13 | 60.1 |
| MS.gene41435.t1 | MTR_3g435000 | 39.706 | 68 | 41 | 0 | 13 | 80 | 14 | 81 | 1.45e-12 | 58.9 |
| MS.gene41435.t1 | MTR_8g098915 | 50.943 | 53 | 26 | 0 | 23 | 75 | 1 | 53 | 1.57e-12 | 58.9 |
| MS.gene41435.t1 | MTR_0795s0020 | 46.479 | 71 | 31 | 2 | 3 | 73 | 1 | 64 | 1.74e-12 | 59.3 |
| MS.gene41435.t1 | MTR_7g451200 | 40.789 | 76 | 44 | 1 | 5 | 80 | 3 | 77 | 2.10e-12 | 58.5 |
| MS.gene41435.t1 | MTR_1173s0010 | 40.789 | 76 | 44 | 1 | 5 | 80 | 3 | 77 | 2.17e-12 | 58.5 |
| MS.gene41435.t1 | MTR_1g099815 | 47.887 | 71 | 35 | 2 | 5 | 75 | 3 | 71 | 6.01e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41435.t1 | AT5G23760 | 86.301 | 73 | 10 | 0 | 4 | 76 | 3 | 75 | 3.43e-24 | 88.6 |
| MS.gene41435.t1 | AT5G23760 | 84.375 | 64 | 10 | 0 | 13 | 76 | 1 | 64 | 2.87e-18 | 73.2 |
| MS.gene41435.t1 | AT5G52740 | 47.887 | 71 | 34 | 2 | 3 | 73 | 1 | 68 | 4.35e-11 | 55.5 |
| MS.gene41435.t1 | AT1G01490 | 44.118 | 102 | 43 | 3 | 3 | 91 | 1 | 101 | 6.37e-11 | 56.2 |
| MS.gene41435.t1 | AT1G01490 | 44.118 | 102 | 43 | 3 | 3 | 91 | 1 | 101 | 6.37e-11 | 56.2 |
| MS.gene41435.t1 | AT1G01490 | 45.000 | 100 | 41 | 3 | 5 | 91 | 30 | 128 | 6.75e-11 | 56.6 |
Find 11 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAGAAGTTAACAGTTAT+TGG | 0.231458 | 1.4:+78336299 | MS.gene41435:CDS |
| ATAGCAAAAGGTGGTGTTAA+AGG | 0.319190 | 1.4:+78336065 | MS.gene41435:intron |
| GTTAACAGTTATTGGCGAAA+TGG | 0.409498 | 1.4:+78336307 | MS.gene41435:CDS |
| GAAGCAGTTGCTGATATCTA+TGG | 0.414404 | 1.4:+78336129 | MS.gene41435:CDS |
| GTGAAGAAGCTGAAGAAAGT+AGG | 0.441545 | 1.4:+78336344 | MS.gene41435:CDS |
| TGAAGAAGCTGAAGAAAGTA+GGG | 0.447970 | 1.4:+78336345 | MS.gene41435:CDS |
| CGAAAGTAAAGACGAAAAGA+AGG | 0.460664 | 1.4:+78336427 | MS.gene41435:CDS |
| AAGGTAGATATAATATCAGT+TGG | 0.509973 | 1.4:+78336368 | MS.gene41435:CDS |
| CTTCCCTGTGACAATGGCTC+AGG | 0.517352 | 1.4:+78335686 | None:intergenic |
| GAAGCTGAAGAAAGTAGGGA+AGG | 0.555805 | 1.4:+78336349 | MS.gene41435:CDS |
| ACTGGATCCATAGCAAAAGG+TGG | 0.684112 | 1.4:+78336056 | MS.gene41435:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTATTTTAAATTGTTTTTG+AGG | + | chr1.4:78335878-78335897 | MS.gene41435:intron | 15.0% |
| !!! | CTATTTTAAATTGTTTTTGA+GGG | + | chr1.4:78335879-78335898 | MS.gene41435:intron | 15.0% |
| !!! | AATTTAGTTTTCTGGTAAAT+TGG | - | chr1.4:78336185-78336204 | None:intergenic | 20.0% |
| ! | AAGGTAGATATAATATCAGT+TGG | + | chr1.4:78336368-78336387 | MS.gene41435:CDS | 25.0% |
| !!! | AAATTGTTTTTGAGGGAATT+TGG | + | chr1.4:78335886-78335905 | MS.gene41435:intron | 25.0% |
| !!! | TTCTTCTTTTTTCTCTTCTT+TGG | - | chr1.4:78336399-78336418 | None:intergenic | 25.0% |
| AAAATGAATATATGCGCACA+TGG | - | chr1.4:78335774-78335793 | None:intergenic | 30.0% | |
| AAAGAAGGAAGAGAAAAAAG+AGG | + | chr1.4:78336442-78336461 | MS.gene41435:CDS | 30.0% | |
| AAATTCATCTGTGTAACTGT+TGG | + | chr1.4:78336233-78336252 | MS.gene41435:intron | 30.0% | |
| ACATAAGAGGATAGAAAAAG+TGG | - | chr1.4:78336014-78336033 | None:intergenic | 30.0% | |
| ATCTATCTCTTGAGGTTATA+AGG | + | chr1.4:78335910-78335929 | MS.gene41435:intron | 30.0% | |
| ATTCCATTAATGTGTTTCCA+GGG | - | chr1.4:78336212-78336231 | None:intergenic | 30.0% | |
| CATATTGAGACAAACATAAG+AGG | - | chr1.4:78336027-78336046 | None:intergenic | 30.0% | |
| GAACAGAAGTTAACAGTTAT+TGG | + | chr1.4:78336299-78336318 | MS.gene41435:CDS | 30.0% | |
| TATTCCATTAATGTGTTTCC+AGG | - | chr1.4:78336213-78336232 | None:intergenic | 30.0% | |
| ! | AATTTGGAATCTATCTCTTG+AGG | + | chr1.4:78335902-78335921 | MS.gene41435:intron | 30.0% |
| ! | ACTGTTGGTACTTTTATAAC+AGG | + | chr1.4:78336248-78336267 | MS.gene41435:intron | 30.0% |
| AGAAAACTAAATTTCTGCCC+TGG | + | chr1.4:78336192-78336211 | MS.gene41435:intron | 35.0% | |
| AGGTATGGATTCTCTCATTT+GGG | + | chr1.4:78335706-78335725 | MS.gene41435:intron | 35.0% | |
| CGAAAGTAAAGACGAAAAGA+AGG | + | chr1.4:78336427-78336446 | MS.gene41435:CDS | 35.0% | |
| CTATAACCAAACAGTACATG+AGG | - | chr1.4:78335958-78335977 | None:intergenic | 35.0% | |
| GAAAAAAGAGGAGAAACAAG+AGG | + | chr1.4:78336454-78336473 | MS.gene41435:CDS | 35.0% | |
| GTTAACAGTTATTGGCGAAA+TGG | + | chr1.4:78336307-78336326 | MS.gene41435:CDS | 35.0% | |
| TGAAGAAGCTGAAGAAAGTA+GGG | + | chr1.4:78336345-78336364 | MS.gene41435:CDS | 35.0% | |
| ! | ATAGCAAAAGGTGGTGTTAA+AGG | + | chr1.4:78336065-78336084 | MS.gene41435:intron | 35.0% |
| ! | TTTAACACCACCTTTTGCTA+TGG | - | chr1.4:78336066-78336085 | None:intergenic | 35.0% |
| !!! | AGGGCAGAAATTTAGTTTTC+TGG | - | chr1.4:78336193-78336212 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCTCTTCTTTGGC+AGG | - | chr1.4:78336395-78336414 | None:intergenic | 35.0% |
| CAGGTATGGATTCTCTCATT+TGG | + | chr1.4:78335705-78335724 | MS.gene41435:intron | 40.0% | |
| GAAGCAGTTGCTGATATCTA+TGG | + | chr1.4:78336129-78336148 | MS.gene41435:CDS | 40.0% | |
| GTGAAGAAGCTGAAGAAAGT+AGG | + | chr1.4:78336344-78336363 | MS.gene41435:CDS | 40.0% | |
| TGAATATATGCGCACATGGA+TGG | - | chr1.4:78335770-78335789 | None:intergenic | 40.0% | |
| !! | TTTTGCTATGGATCCAGTGA+GGG | - | chr1.4:78336054-78336073 | None:intergenic | 40.0% |
| ACTGGATCCATAGCAAAAGG+TGG | + | chr1.4:78336056-78336075 | MS.gene41435:intron | 45.0% | |
| CTCAATATGATGTCCCTCAC+TGG | + | chr1.4:78336038-78336057 | MS.gene41435:intron | 45.0% | |
| CTCACTGGATCCATAGCAAA+AGG | + | chr1.4:78336053-78336072 | MS.gene41435:intron | 45.0% | |
| CTGCCCTGGAAACACATTAA+TGG | + | chr1.4:78336206-78336225 | MS.gene41435:intron | 45.0% | |
| GAAGCTGAAGAAAGTAGGGA+AGG | + | chr1.4:78336349-78336368 | MS.gene41435:CDS | 45.0% | |
| !! | CTTTTGCTATGGATCCAGTG+AGG | - | chr1.4:78336055-78336074 | None:intergenic | 45.0% |
| CTGACGCCTCATGTACTGTT+TGG | + | chr1.4:78335949-78335968 | MS.gene41435:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78335699 | 78336487 | 78335699 | ID=MS.gene41435 |
| chr1.4 | mRNA | 78335699 | 78336487 | 78335699 | ID=MS.gene41435.t1;Parent=MS.gene41435 |
| chr1.4 | exon | 78335699 | 78335707 | 78335699 | ID=MS.gene41435.t1.exon1;Parent=MS.gene41435.t1 |
| chr1.4 | CDS | 78335699 | 78335707 | 78335699 | ID=cds.MS.gene41435.t1;Parent=MS.gene41435.t1 |
| chr1.4 | exon | 78336069 | 78336150 | 78336069 | ID=MS.gene41435.t1.exon2;Parent=MS.gene41435.t1 |
| chr1.4 | CDS | 78336069 | 78336150 | 78336069 | ID=cds.MS.gene41435.t1;Parent=MS.gene41435.t1 |
| chr1.4 | exon | 78336270 | 78336487 | 78336270 | ID=MS.gene41435.t1.exon3;Parent=MS.gene41435.t1 |
| chr1.4 | CDS | 78336270 | 78336487 | 78336270 | ID=cds.MS.gene41435.t1;Parent=MS.gene41435.t1 |
| Gene Sequence |
| Protein sequence |
