Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49010.t1 | XP_013448647.1 | 95.1 | 205 | 10 | 0 | 1 | 205 | 1 | 205 | 7.10E-74 | 287 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49010.t1 | A0A072TYU5 | 95.1 | 205 | 10 | 0 | 1 | 205 | 1 | 205 | 5.1e-74 | 287.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene49010 | 0.828442 | 8.97E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene49010 | 0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene49010 | 0.823672 | 1.22E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene49010 | 0.808325 | 3.27E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene49010 | 0.831807 | 1.35E-55 | -1.69E-46 |
| MS.gene049356 | MS.gene49010 | 0.837962 | 3.81E-57 | -1.69E-46 |
| MS.gene049369 | MS.gene49010 | 0.862202 | 5.99E-64 | -1.69E-46 |
| MS.gene049427 | MS.gene49010 | 0.857315 | 1.77E-62 | -1.69E-46 |
| MS.gene049609 | MS.gene49010 | 0.808356 | 3.23E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene49010 | 0.80798 | 3.88E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene49010 | 0.825894 | 3.65E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene49010 | 0.816896 | 4.36E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene49010 | 0.80335 | 3.64E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene49010 | 0.878026 | 3.92E-69 | -1.69E-46 |
| MS.gene050686 | MS.gene49010 | 0.813126 | 3.00E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene49010 | 0.831646 | 1.48E-55 | -1.69E-46 |
| MS.gene050770 | MS.gene49010 | 0.832673 | 8.26E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene49010 | 0.835398 | 1.72E-56 | -1.69E-46 |
| MS.gene05080 | MS.gene49010 | 0.80589 | 1.07E-49 | -1.69E-46 |
| MS.gene05100 | MS.gene49010 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene49010 | 0.814531 | 1.47E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene49010 | 0.871377 | 7.16E-67 | -1.69E-46 |
| MS.gene051666 | MS.gene49010 | 0.85546 | 6.22E-62 | -1.69E-46 |
| MS.gene051692 | MS.gene49010 | 0.84424 | 8.54E-59 | -1.69E-46 |
| MS.gene051810 | MS.gene49010 | 0.831828 | 1.34E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene49010 | 0.801282 | 9.69E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene49010 | 0.834974 | 2.20E-56 | -1.69E-46 |
| MS.gene052290 | MS.gene49010 | 0.835672 | 1.46E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene49010 | 0.811462 | 6.92E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene49010 | 0.801386 | 9.23E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene49010 | 0.825792 | 3.86E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene49010 | 0.801979 | 6.97E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene49010 | 0.812422 | 4.27E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene49010 | 0.83359 | 4.89E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene49010 | 0.806859 | 6.70E-50 | -1.69E-46 |
| MS.gene053009 | MS.gene49010 | 0.850047 | 2.19E-60 | -1.69E-46 |
| MS.gene053103 | MS.gene49010 | 0.834514 | 2.87E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene49010 | 0.851884 | 6.63E-61 | -1.69E-46 |
| MS.gene053207 | MS.gene49010 | 0.824922 | 6.21E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene49010 | 0.807404 | 5.14E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene49010 | 0.82856 | 8.40E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene49010 | 0.821495 | 3.92E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene49010 | 0.831703 | 1.44E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene49010 | 0.826432 | 2.72E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene49010 | 0.817209 | 3.71E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene49010 | 0.848395 | 6.30E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene49010 | 0.806168 | 9.38E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene49010 | 0.839743 | 1.32E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene49010 | 0.852248 | 5.23E-61 | -1.69E-46 |
| MS.gene054376 | MS.gene49010 | 0.820895 | 5.39E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene49010 | 0.821749 | 3.42E-53 | -1.69E-46 |
| MS.gene054642 | MS.gene49010 | 0.851884 | 6.64E-61 | -1.69E-46 |
| MS.gene05505 | MS.gene49010 | 0.840701 | 7.42E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene49010 | 0.813364 | 2.66E-51 | -1.69E-46 |
| MS.gene055212 | MS.gene49010 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene055254 | MS.gene49010 | 0.828859 | 7.11E-55 | -1.69E-46 |
| MS.gene055289 | MS.gene49010 | 0.809479 | 1.85E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene49010 | 0.871568 | 6.19E-67 | -1.69E-46 |
| MS.gene055499 | MS.gene49010 | 0.830365 | 3.06E-55 | -1.69E-46 |
| MS.gene055647 | MS.gene49010 | 0.812427 | 4.26E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene49010 | 0.867433 | 1.37E-65 | -1.69E-46 |
| MS.gene05592 | MS.gene49010 | 0.849794 | 2.57E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene49010 | 0.81215 | 4.90E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene49010 | 0.847199 | 1.34E-59 | -1.69E-46 |
| MS.gene056422 | MS.gene49010 | 0.805044 | 1.61E-49 | -1.69E-46 |
| MS.gene056487 | MS.gene49010 | 0.831909 | 1.28E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene49010 | 0.82324 | 1.54E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene49010 | 0.864785 | 9.47E-65 | -1.69E-46 |
| MS.gene05664 | MS.gene49010 | 0.829819 | 4.16E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene49010 | 0.833888 | 4.12E-56 | -1.69E-46 |
| MS.gene05666 | MS.gene49010 | 0.816064 | 6.70E-52 | -1.69E-46 |
| MS.gene056897 | MS.gene49010 | 0.85212 | 5.69E-61 | -1.69E-46 |
| MS.gene057076 | MS.gene49010 | 0.83827 | 3.18E-57 | -1.69E-46 |
| MS.gene057124 | MS.gene49010 | 0.810253 | 1.26E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene49010 | 0.888417 | 6.02E-73 | -1.69E-46 |
| MS.gene057246 | MS.gene49010 | 0.815429 | 9.29E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene49010 | 0.824583 | 7.46E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene49010 | 0.820347 | 7.20E-53 | -1.69E-46 |
| MS.gene05735 | MS.gene49010 | 0.859401 | 4.24E-63 | -1.69E-46 |
| MS.gene057416 | MS.gene49010 | 0.824973 | 6.04E-54 | -1.69E-46 |
| MS.gene057537 | MS.gene49010 | 0.82901 | 6.54E-55 | -1.69E-46 |
| MS.gene057734 | MS.gene49010 | 0.838529 | 2.72E-57 | -1.69E-46 |
| MS.gene057926 | MS.gene49010 | 0.833577 | 4.92E-56 | -1.69E-46 |
| MS.gene057927 | MS.gene49010 | 0.800874 | 1.17E-48 | -1.69E-46 |
| MS.gene058019 | MS.gene49010 | 0.805641 | 1.21E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene49010 | 0.826684 | 2.37E-54 | -1.69E-46 |
| MS.gene058459 | MS.gene49010 | 0.825204 | 5.33E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene49010 | 0.811924 | 5.49E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene49010 | 0.843652 | 1.23E-58 | -1.69E-46 |
| MS.gene058928 | MS.gene49010 | 0.811018 | 8.64E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene49010 | 0.823636 | 1.25E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene49010 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene49010 | 0.810154 | 1.33E-50 | -1.69E-46 |
| MS.gene059455 | MS.gene49010 | 0.800913 | 1.15E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene49010 | 0.820218 | 7.70E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene49010 | 0.836943 | 6.96E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene49010 | 0.838809 | 2.31E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene49010 | 0.838022 | 3.68E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene49010 | 0.817488 | 3.21E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene49010 | 0.810811 | 9.57E-51 | -1.69E-46 |
| MS.gene05986 | MS.gene49010 | 0.810382 | 1.18E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene49010 | 0.831375 | 1.73E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene49010 | 0.802638 | 5.10E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene49010 | 0.867133 | 1.71E-65 | -1.69E-46 |
| MS.gene060818 | MS.gene49010 | 0.863434 | 2.50E-64 | -1.69E-46 |
| MS.gene060835 | MS.gene49010 | 0.809474 | 1.86E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene49010 | 0.829574 | 4.77E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene49010 | 0.873231 | 1.73E-67 | -1.69E-46 |
| MS.gene061051 | MS.gene49010 | -0.845656 | 3.54E-59 | -1.69E-46 |
| MS.gene061200 | MS.gene49010 | 0.84804 | 7.89E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49010.t1 | MTR_7g056413 | 95.122 | 205 | 10 | 0 | 1 | 205 | 1 | 205 | 9.16e-91 | 265 |
| MS.gene49010.t1 | MTR_2g026670 | 43.825 | 251 | 93 | 8 | 1 | 204 | 1 | 250 | 2.55e-45 | 150 |
| MS.gene49010.t1 | MTR_4g133900 | 79.167 | 72 | 15 | 0 | 4 | 75 | 8 | 79 | 3.29e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49010.t1 | AT4G16380 | 65.333 | 75 | 26 | 0 | 2 | 76 | 13 | 87 | 1.04e-29 | 110 |
| MS.gene49010.t1 | AT4G16380 | 65.333 | 75 | 26 | 0 | 2 | 76 | 6 | 80 | 1.20e-29 | 110 |
| MS.gene49010.t1 | AT1G51090 | 35.784 | 204 | 97 | 5 | 1 | 204 | 1 | 170 | 1.13e-23 | 92.8 |
| MS.gene49010.t1 | AT1G49420 | 49.367 | 79 | 39 | 1 | 2 | 79 | 6 | 84 | 1.13e-18 | 80.5 |
| MS.gene49010.t1 | AT4G16380 | 62.222 | 45 | 17 | 0 | 32 | 76 | 15 | 59 | 5.31e-14 | 68.6 |
Find 67 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGTCTCTTACCTTCTT+TGG | 0.194931 | 7.3:+48495891 | None:intergenic |
| CATTCTTCTCATCATATATT+TGG | 0.199717 | 7.3:+48495946 | None:intergenic |
| GTTCCTTATGGGCATGTTTA+TGG | 0.209138 | 7.3:-48495591 | MS.gene49010:CDS |
| CCTTCGCCAGTTGTTCCTTA+TGG | 0.209497 | 7.3:-48495603 | MS.gene49010:CDS |
| CTTCGCCAGTTGTTCCTTAT+GGG | 0.271859 | 7.3:-48495602 | MS.gene49010:CDS |
| AACTATTTCTATGCTCTTGA+TGG | 0.278008 | 7.3:+48495848 | None:intergenic |
| TATTGTCTCTTACCTTCTTT+GGG | 0.283371 | 7.3:+48495892 | None:intergenic |
| CACAAGGACCCTTCAACTTA+TGG | 0.333356 | 7.3:+48495443 | None:intergenic |
| GCCGGAGCTGGTGCCGGAGC+TGG | 0.340628 | 7.3:+48495708 | None:intergenic |
| ATCGGCTTTGCCTCGGCCAC+GGG | 0.356925 | 7.3:+48495771 | None:intergenic |
| TCATGTGCTGGCTTAGGCTT+TGG | 0.357337 | 7.3:+48495819 | None:intergenic |
| CCATCCATAACTATCATATA+CGG | 0.359961 | 7.3:+48495530 | None:intergenic |
| GCCGGAGCTGGAGCTGGACT+TGG | 0.364027 | 7.3:+48495720 | None:intergenic |
| GGCGGGCCAGGTTGTGCAAT+CGG | 0.376262 | 7.3:+48495753 | None:intergenic |
| GCTGGTGCCGGAGCTGGAGC+TGG | 0.380110 | 7.3:+48495714 | None:intergenic |
| GCTGCAGCACACCACTCTTA+TGG | 0.386416 | 7.3:+48495914 | None:intergenic |
| GCCGGTGCCTGAGCCGGAGC+TGG | 0.401075 | 7.3:+48495696 | None:intergenic |
| AATCGGCTTTGCCTCGGCCA+CGG | 0.401999 | 7.3:+48495770 | None:intergenic |
| TCTTTGGGCTTCTCATGTGC+TGG | 0.402264 | 7.3:+48495807 | None:intergenic |
| GCCTGAGCCGGAGCTGGTGC+CGG | 0.417776 | 7.3:+48495702 | None:intergenic |
| TATGGGCATGTTTATGGTGC+TGG | 0.421138 | 7.3:-48495585 | MS.gene49010:CDS |
| TCCAGCTCCGGCACCAGCTC+CGG | 0.434194 | 7.3:-48495709 | MS.gene49010:CDS |
| TCCGGCACCAGCTCCGGCTC+AGG | 0.434564 | 7.3:-48495703 | MS.gene49010:CDS |
| ATGGAGTGGGCCTTGTTATG+TGG | 0.439002 | 7.3:-48495511 | MS.gene49010:CDS |
| ACATGCCCATAAGGAACAAC+TGG | 0.446939 | 7.3:+48495597 | None:intergenic |
| GGTGCAGTCGCAGAAGGAAG+TGG | 0.461054 | 7.3:+48495672 | None:intergenic |
| CATGTTTATGGTGCTGGACA+AGG | 0.462627 | 7.3:-48495579 | MS.gene49010:CDS |
| GGCTTCTCATGTGCTGGCTT+AGG | 0.467240 | 7.3:+48495813 | None:intergenic |
| TGTGCTGGCTTAGGCTTTGG+TGG | 0.473606 | 7.3:+48495822 | None:intergenic |
| AGTGGAGCCGGTGCCTGAGC+CGG | 0.473677 | 7.3:+48495690 | None:intergenic |
| TCTCTAAGCCATGGAGCAAA+AGG | 0.474451 | 7.3:-48496522 | None:intergenic |
| CGATTGCTTGCGCGAAGAAG+AGG | 0.475381 | 7.3:-48495478 | MS.gene49010:CDS |
| GAGACAATATTTGTTGTCAA+GGG | 0.480293 | 7.3:-48495878 | MS.gene49010:CDS |
| ACCAGCTCCGGCTCAGGCAC+CGG | 0.483282 | 7.3:-48495697 | MS.gene49010:CDS |
| GCACCATAAACATGCCCATA+AGG | 0.487789 | 7.3:+48495588 | None:intergenic |
| TTGTGCAATCGGCTTTGCCT+CGG | 0.490744 | 7.3:+48495764 | None:intergenic |
| TGGAGTGGGCCTTGTTATGT+GGG | 0.498721 | 7.3:-48495510 | MS.gene49010:CDS |
| GTCGCAGAAGGAAGTGGAGC+CGG | 0.501463 | 7.3:+48495678 | None:intergenic |
| TCCAAGTCCAGCTCCAGCTC+CGG | 0.508493 | 7.3:-48495721 | MS.gene49010:CDS |
| CGACATGTACCATAAGTTGA+AGG | 0.510579 | 7.3:-48495452 | None:intergenic |
| GCAAAGCCGATTGCACAACC+TGG | 0.511042 | 7.3:-48495759 | MS.gene49010:CDS |
| AGAGACAATATTTGTTGTCA+AGG | 0.511179 | 7.3:-48495879 | MS.gene49010:CDS |
| CAAATATATGATGAGAAGAA+TGG | 0.524975 | 7.3:-48495945 | MS.gene49010:CDS |
| CTTCTTCGCGCAAGCAATCG+TGG | 0.538333 | 7.3:+48495481 | None:intergenic |
| AGGCCCGTATATGATAGTTA+TGG | 0.539945 | 7.3:-48495534 | MS.gene49010:CDS |
| GGTGTGCTGCAGCCCAAAGA+AGG | 0.550575 | 7.3:-48495904 | MS.gene49010:CDS |
| ACAGCTGGTGCAGTCGCAGA+AGG | 0.558520 | 7.3:+48495666 | None:intergenic |
| CATCCATAACTATCATATAC+GGG | 0.559099 | 7.3:+48495531 | None:intergenic |
| TGGCGAAGGATATGCAAGAA+TGG | 0.564765 | 7.3:+48495617 | None:intergenic |
| ATGATAGTTATGGATGGAGT+GGG | 0.567519 | 7.3:-48495524 | MS.gene49010:CDS |
| TGGTGATGACCCACATAACA+AGG | 0.583828 | 7.3:+48495501 | None:intergenic |
| TTATGCAGGTTGCTATAATG+AGG | 0.585675 | 7.3:-48496341 | MS.gene49010:intron |
| TATGATAGTTATGGATGGAG+TGG | 0.593289 | 7.3:-48495525 | MS.gene49010:CDS |
| AGACAATATTTGTTGTCAAG+GGG | 0.594817 | 7.3:-48495877 | MS.gene49010:CDS |
| GCCTCCCGTAAAACTGTGGG+TGG | 0.601345 | 7.3:+48495553 | None:intergenic |
| ACGGGCCTCCCGTAAAACTG+TGG | 0.609547 | 7.3:+48495549 | None:intergenic |
| GTGTGAGGATACATTACAGC+TGG | 0.610753 | 7.3:+48495651 | None:intergenic |
| CCATAAGGAACAACTGGCGA+AGG | 0.625985 | 7.3:+48495603 | None:intergenic |
| GGTTGCTATAATGAGGCTCA+AGG | 0.630973 | 7.3:-48496334 | MS.gene49010:CDS |
| GACAATATTTGTTGTCAAGG+GGG | 0.632032 | 7.3:-48495876 | MS.gene49010:CDS |
| CCGTATATGATAGTTATGGA+TGG | 0.637657 | 7.3:-48495530 | MS.gene49010:CDS |
| ACTCACGAGGGTATTTGCAA+AGG | 0.638434 | 7.3:+48496268 | None:intergenic |
| CGGGCCTCCCGTAAAACTGT+GGG | 0.643742 | 7.3:+48495550 | None:intergenic |
| GGATATGCAAGAATGGACAT+TGG | 0.650120 | 7.3:+48495624 | None:intergenic |
| ATGGACATTGGCGTTGTGTG+AGG | 0.663282 | 7.3:+48495636 | None:intergenic |
| GTTTATGGTGCTGGACAAGG+TGG | 0.674350 | 7.3:-48495576 | MS.gene49010:CDS |
| TGGTATTGTGACCATAAGAG+TGG | 0.707513 | 7.3:-48495925 | MS.gene49010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAACAAATTAAGA+AGG | + | chr7.3:48495927-48495946 | None:intergenic | 10.0% |
| !! | AAAATCAAGAAACTAAAATT+AGG | + | chr7.3:48495895-48495914 | None:intergenic | 15.0% |
| !!! | AATTCAAGCATTTAATTTAA+TGG | + | chr7.3:48495578-48495597 | None:intergenic | 15.0% |
| !! | GAAAGATAATAAAATATGAG+AGG | + | chr7.3:48495745-48495764 | None:intergenic | 20.0% |
| ! | CAAATATATGATGAGAAGAA+TGG | - | chr7.3:48496022-48496041 | MS.gene49010:intron | 25.0% |
| ! | CATTCTTCTCATCATATATT+TGG | + | chr7.3:48496024-48496043 | None:intergenic | 25.0% |
| ! | GCAATACTAACAAATTAAGA+AGG | + | chr7.3:48495956-48495975 | None:intergenic | 25.0% |
| ! | TGGTTATTACTAGAACTAAT+TGG | + | chr7.3:48495558-48495577 | None:intergenic | 25.0% |
| !! | ATCTTTCCTCATACATATTT+TGG | - | chr7.3:48495758-48495777 | MS.gene49010:CDS | 25.0% |
| !! | GGTGGTGTTAATATATTATT+AGG | - | chr7.3:48495784-48495803 | MS.gene49010:CDS | 25.0% |
| ACCATACCAAAATATGTATG+AGG | + | chr7.3:48495767-48495786 | None:intergenic | 30.0% | |
| ATATTGTCTCTTACCTTCTT+TGG | + | chr7.3:48496079-48496098 | None:intergenic | 30.0% | |
| CATCCATAACTATCATATAC+GGG | + | chr7.3:48496439-48496458 | None:intergenic | 30.0% | |
| CCATCCATAACTATCATATA+CGG | + | chr7.3:48496440-48496459 | None:intergenic | 30.0% | |
| TATTATTGAAAGACTCACGA+GGG | + | chr7.3:48495714-48495733 | None:intergenic | 30.0% | |
| TATTGTCTCTTACCTTCTTT+GGG | + | chr7.3:48496078-48496097 | None:intergenic | 30.0% | |
| TTATTATTGAAAGACTCACG+AGG | + | chr7.3:48495715-48495734 | None:intergenic | 30.0% | |
| ! | AACTAATTGGCTTAGTTAAG+AGG | + | chr7.3:48495545-48495564 | None:intergenic | 30.0% |
| ! | TACAGCATTTTCTACATTGA+AGG | + | chr7.3:48495663-48495682 | None:intergenic | 30.0% |
| ! | TTCTTTTCTTGAACTTATGC+AGG | - | chr7.3:48495612-48495631 | MS.gene49010:CDS | 30.0% |
| !! | AACTATTTCTATGCTCTTGA+TGG | + | chr7.3:48496122-48496141 | None:intergenic | 30.0% |
| !! | AGACAATATTTGTTGTCAAG+GGG | - | chr7.3:48496090-48496109 | MS.gene49010:intron | 30.0% |
| !! | AGAGACAATATTTGTTGTCA+AGG | - | chr7.3:48496088-48496107 | MS.gene49010:intron | 30.0% |
| !! | GAGACAATATTTGTTGTCAA+GGG | - | chr7.3:48496089-48496108 | MS.gene49010:intron | 30.0% |
| !!! | TCATACATATTTTGGTATGG+TGG | - | chr7.3:48495766-48495785 | MS.gene49010:CDS | 30.0% |
| !!! | TCCTCATACATATTTTGGTA+TGG | - | chr7.3:48495763-48495782 | MS.gene49010:CDS | 30.0% |
| ATGATAGTTATGGATGGAGT+GGG | - | chr7.3:48496443-48496462 | MS.gene49010:intron | 35.0% | |
| CCGTATATGATAGTTATGGA+TGG | - | chr7.3:48496437-48496456 | MS.gene49010:intron | 35.0% | |
| TATGATAGTTATGGATGGAG+TGG | - | chr7.3:48496442-48496461 | MS.gene49010:intron | 35.0% | |
| TTATGCAGGTTGCTATAATG+AGG | - | chr7.3:48495626-48495645 | MS.gene49010:CDS | 35.0% | |
| ! | ATTGGCTTAGTTAAGAGGAA+TGG | + | chr7.3:48495540-48495559 | None:intergenic | 35.0% |
| !! | GACAATATTTGTTGTCAAGG+GGG | - | chr7.3:48496091-48496110 | MS.gene49010:intron | 35.0% |
| !!! | GGCTTTTTTTCTTGCTCTTT+GGG | + | chr7.3:48496178-48496197 | None:intergenic | 35.0% |
| AGGCCCGTATATGATAGTTA+TGG | - | chr7.3:48496433-48496452 | MS.gene49010:intron | 40.0% | |
| GGATATGCAAGAATGGACAT+TGG | + | chr7.3:48496346-48496365 | None:intergenic | 40.0% | |
| GTTCCTTATGGGCATGTTTA+TGG | - | chr7.3:48496376-48496395 | MS.gene49010:intron | 40.0% | |
| TGGTATTGTGACCATAAGAG+TGG | - | chr7.3:48496042-48496061 | MS.gene49010:intron | 40.0% | |
| !! | AATATTTGTTGTCAAGGGGG+TGG | - | chr7.3:48496094-48496113 | MS.gene49010:intron | 40.0% |
| !! | GACTTGGATTTTGTTTAGGC+GGG | + | chr7.3:48496234-48496253 | None:intergenic | 40.0% |
| !! | GCTGGACTTGGATTTTGTTT+AGG | + | chr7.3:48496238-48496257 | None:intergenic | 40.0% |
| !! | GGACTTGGATTTTGTTTAGG+CGG | + | chr7.3:48496235-48496254 | None:intergenic | 40.0% |
| !!! | GGGCTTTTTTTCTTGCTCTT+TGG | + | chr7.3:48496179-48496198 | None:intergenic | 40.0% |
| ACATGCCCATAAGGAACAAC+TGG | + | chr7.3:48496373-48496392 | None:intergenic | 45.0% | |
| AGAGCAAGAAAAAAAGCCCG+TGG | - | chr7.3:48496180-48496199 | MS.gene49010:intron | 45.0% | |
| CTTCGCCAGTTGTTCCTTAT+GGG | - | chr7.3:48496365-48496384 | MS.gene49010:intron | 45.0% | |
| GCACCATAAACATGCCCATA+AGG | + | chr7.3:48496382-48496401 | None:intergenic | 45.0% | |
| GGTTGCTATAATGAGGCTCA+AGG | - | chr7.3:48495633-48495652 | MS.gene49010:CDS | 45.0% | |
| GTGTGAGGATACATTACAGC+TGG | + | chr7.3:48496319-48496338 | None:intergenic | 45.0% | |
| TATGGGCATGTTTATGGTGC+TGG | - | chr7.3:48496382-48496401 | MS.gene49010:intron | 45.0% | |
| TGGCGAAGGATATGCAAGAA+TGG | + | chr7.3:48496353-48496372 | None:intergenic | 45.0% | |
| ! | CATGTTTATGGTGCTGGACA+AGG | - | chr7.3:48496388-48496407 | MS.gene49010:intron | 45.0% |
| ! | TGGTGATGACCCACATAACA+AGG | + | chr7.3:48496469-48496488 | None:intergenic | 45.0% |
| !! | ACTCACGAGGGTATTTGCAA+AGG | + | chr7.3:48495702-48495721 | None:intergenic | 45.0% |
| !! | AATACAAAATTTATATTTAA+TGG | + | chr7.3:48495819-48495838 | None:intergenic | 5.0% |
| ATGGACATTGGCGTTGTGTG+AGG | + | chr7.3:48496334-48496353 | None:intergenic | 50.0% | |
| CCATAAGGAACAACTGGCGA+AGG | + | chr7.3:48496367-48496386 | None:intergenic | 50.0% | |
| CCTTCGCCAGTTGTTCCTTA+TGG | - | chr7.3:48496364-48496383 | MS.gene49010:intron | 50.0% | |
| TCTTTGGGCTTCTCATGTGC+TGG | + | chr7.3:48496163-48496182 | None:intergenic | 50.0% | |
| ! | GTTTATGGTGCTGGACAAGG+TGG | - | chr7.3:48496391-48496410 | MS.gene49010:intron | 50.0% |
| ! | TTGTGCAATCGGCTTTGCCT+CGG | + | chr7.3:48496206-48496225 | None:intergenic | 50.0% |
| !! | ATGGAGTGGGCCTTGTTATG+TGG | - | chr7.3:48496456-48496475 | MS.gene49010:intron | 50.0% |
| !! | TCATGTGCTGGCTTAGGCTT+TGG | + | chr7.3:48496151-48496170 | None:intergenic | 50.0% |
| !! | TGGAGTGGGCCTTGTTATGT+GGG | - | chr7.3:48496457-48496476 | MS.gene49010:intron | 50.0% |
| AGAAAAAAAGCCCGTGGCCG+AGG | - | chr7.3:48496186-48496205 | MS.gene49010:intron | 55.0% | |
| CGATTGCTTGCGCGAAGAAG+AGG | - | chr7.3:48496489-48496508 | MS.gene49010:intron | 55.0% | |
| CTTCTTCGCGCAAGCAATCG+TGG | + | chr7.3:48496489-48496508 | None:intergenic | 55.0% | |
| GCAAAGCCGATTGCACAACC+TGG | - | chr7.3:48496208-48496227 | MS.gene49010:intron | 55.0% | |
| GCTGCAGCACACCACTCTTA+TGG | + | chr7.3:48496056-48496075 | None:intergenic | 55.0% | |
| ! | GGTGGCCACCCACAGTTTTA+CGG | - | chr7.3:48496409-48496428 | MS.gene49010:intron | 55.0% |
| ! | GTGGCCACCCACAGTTTTAC+GGG | - | chr7.3:48496410-48496429 | MS.gene49010:intron | 55.0% |
| !! | GGATTTTGTTTAGGCGGGCC+AGG | + | chr7.3:48496229-48496248 | None:intergenic | 55.0% |
| !! | GGCTTCTCATGTGCTGGCTT+AGG | + | chr7.3:48496157-48496176 | None:intergenic | 55.0% |
| !! | TGTGCTGGCTTAGGCTTTGG+TGG | + | chr7.3:48496148-48496167 | None:intergenic | 55.0% |
| ACAGCTGGTGCAGTCGCAGA+AGG | + | chr7.3:48496304-48496323 | None:intergenic | 60.0% | |
| ACGGGCCTCCCGTAAAACTG+TGG | + | chr7.3:48496421-48496440 | None:intergenic | 60.0% | |
| CGGGCCTCCCGTAAAACTGT+GGG | + | chr7.3:48496420-48496439 | None:intergenic | 60.0% | |
| GCCTCCCGTAAAACTGTGGG+TGG | + | chr7.3:48496417-48496436 | None:intergenic | 60.0% | |
| GGTGCAGTCGCAGAAGGAAG+TGG | + | chr7.3:48496298-48496317 | None:intergenic | 60.0% | |
| GGTGTGCTGCAGCCCAAAGA+AGG | - | chr7.3:48496063-48496082 | MS.gene49010:intron | 60.0% | |
| GTCGCAGAAGGAAGTGGAGC+CGG | + | chr7.3:48496292-48496311 | None:intergenic | 60.0% | |
| TCCAAGTCCAGCTCCAGCTC+CGG | - | chr7.3:48496246-48496265 | MS.gene49010:intron | 60.0% | |
| ! | AATCGGCTTTGCCTCGGCCA+CGG | + | chr7.3:48496200-48496219 | None:intergenic | 60.0% |
| ! | GCCACCCACAGTTTTACGGG+AGG | - | chr7.3:48496413-48496432 | MS.gene49010:intron | 60.0% |
| GGCGGGCCAGGTTGTGCAAT+CGG | + | chr7.3:48496217-48496236 | None:intergenic | 65.0% | |
| ! | ATCGGCTTTGCCTCGGCCAC+GGG | + | chr7.3:48496199-48496218 | None:intergenic | 65.0% |
| ACCAGCTCCGGCTCAGGCAC+CGG | - | chr7.3:48496270-48496289 | MS.gene49010:intron | 70.0% | |
| AGTGGAGCCGGTGCCTGAGC+CGG | + | chr7.3:48496280-48496299 | None:intergenic | 70.0% | |
| GCCGGAGCTGGAGCTGGACT+TGG | + | chr7.3:48496250-48496269 | None:intergenic | 70.0% | |
| TCCAGCTCCGGCACCAGCTC+CGG | - | chr7.3:48496258-48496277 | MS.gene49010:intron | 70.0% | |
| GCCTGAGCCGGAGCTGGTGC+CGG | + | chr7.3:48496268-48496287 | None:intergenic | 75.0% | |
| TCCGGCACCAGCTCCGGCTC+AGG | - | chr7.3:48496264-48496283 | MS.gene49010:intron | 75.0% | |
| ! | GCTGGTGCCGGAGCTGGAGC+TGG | + | chr7.3:48496256-48496275 | None:intergenic | 75.0% |
| ! | GCCGGTGCCTGAGCCGGAGC+TGG | + | chr7.3:48496274-48496293 | None:intergenic | 80.0% |
| !! | GCCGGAGCTGGTGCCGGAGC+TGG | + | chr7.3:48496262-48496281 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 48495455 | 48496534 | 48495455 | ID=MS.gene49010 |
| chr7.3 | mRNA | 48495455 | 48496534 | 48495455 | ID=MS.gene49010.t1;Parent=MS.gene49010 |
| chr7.3 | exon | 48496523 | 48496534 | 48496523 | ID=MS.gene49010.t1.exon1;Parent=MS.gene49010.t1 |
| chr7.3 | CDS | 48496523 | 48496534 | 48496523 | ID=cds.MS.gene49010.t1;Parent=MS.gene49010.t1 |
| chr7.3 | exon | 48496274 | 48496355 | 48496274 | ID=MS.gene49010.t1.exon2;Parent=MS.gene49010.t1 |
| chr7.3 | CDS | 48496274 | 48496355 | 48496274 | ID=cds.MS.gene49010.t1;Parent=MS.gene49010.t1 |
| chr7.3 | exon | 48495455 | 48495978 | 48495455 | ID=MS.gene49010.t1.exon3;Parent=MS.gene49010.t1 |
| chr7.3 | CDS | 48495455 | 48495978 | 48495455 | ID=cds.MS.gene49010.t1;Parent=MS.gene49010.t1 |
| Gene Sequence |
| Protein sequence |
