AlfalfaGEDB | MS.gene63489

M. sativa cultivar XinJiangDaYe / MS.gene63489

KEGG: -
GO: -
PFAM: PF00805.25 PF13576.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63489.t1	XP_024635440.1	96.8	188	6	0	1	188	1	188	4.40E-46	194.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63489.t1	O22160	51.5	103	48	2	1	102	1	102	1.5e-13	77.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63489.t1	A0A072V034	94.1	102	6	0	1	102	1	102	4.3e-43	184.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene63489	0.829093	6.24E-55	-1.69E-46
MS.gene049389	MS.gene63489	0.806923	6.50E-50	-1.69E-46
MS.gene049427	MS.gene63489	0.849928	2.36E-60	-1.69E-46
MS.gene049491	MS.gene63489	0.822623	2.15E-53	-1.69E-46
MS.gene049614	MS.gene63489	0.818898	1.54E-52	-1.69E-46
MS.gene049661	MS.gene63489	0.852513	4.40E-61	-1.69E-46
MS.gene049662	MS.gene63489	0.850502	1.63E-60	-1.69E-46
MS.gene049758	MS.gene63489	0.830544	2.77E-55	-1.69E-46
MS.gene049760	MS.gene63489	0.852975	3.24E-61	-1.69E-46
MS.gene049805	MS.gene63489	0.810699	1.01E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63489.t1	MTR_3g068150	96.791	187	6	0	1	187	1	187	2.19e-126	355

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63489.t1	AT2G44920	86.331	139	19	0	50	188	50	188	2.89e-81	240
MS.gene63489.t1	AT2G44920	86.232	138	19	0	50	187	50	187	2.47e-80	238

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Find 44 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGCTTGACGCAGTA+TGG	0.314554	3.1:+56436633	None:intergenic
AAATTTGAGCAATGCTAATT+TGG	0.246193	3.1:-56435820	MS.gene63489:CDS
AACCTCATCACCATCTCTTA+AGG	0.447203	3.1:-56437427	MS.gene63489:CDS
AACTCCTATCTCTCTGTTTC+TGG	0.179667	3.1:-56437375	MS.gene63489:intron
AAGGTGTTGACCTTAAGAGA+TGG	0.643063	3.1:+56437417	None:intergenic
ACTAGGGGACAAGATCTTTC+TGG	0.219620	3.1:-56436833	MS.gene63489:CDS
AGAAACAGAGAGATAGGAGT+TGG	0.558423	3.1:+56437377	None:intergenic
AGAGATAGGAGTTGGTGAGC+AGG	0.464069	3.1:+56437385	None:intergenic
AGTTGGTGAGCAGGTTGAAG+AGG	0.491050	3.1:+56437394	None:intergenic
ATAGTGATACTACTACATAC+CGG	0.658992	3.1:+56435743	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGCAGTGATTGAAAGTA+GGG	-	chr3.1:56436996-56437015	MS.gene63489:intron	30.0%
ATGAATGTAGTATACACACA+TGG	-	chr3.1:56436689-56436708	MS.gene63489:intron	30.0%
ATGGCAAATTAGAAGATTCA+AGG	-	chr3.1:56437159-56437178	MS.gene63489:CDS	30.0%
CAGAAACTCACATTATCATT+CGG	-	chr3.1:56435987-56436006	MS.gene63489:intron	30.0%
TAATAGCAGTGATTGAAAGT+AGG	-	chr3.1:56436995-56437014	MS.gene63489:intron	30.0%
TACAAACACTAACACAAACA+CGG	+	chr3.1:56436225-56436244	None:intergenic	30.0%
TCATTATGATAGGATCTGAT+GGG	-	chr3.1:56436842-56436861	MS.gene63489:CDS	30.0%
TGGCAAATTAGAAGATTCAA+GGG	-	chr3.1:56437160-56437179	MS.gene63489:CDS	30.0%
TTTAAGGGATCCAATATTAC+AGG	-	chr3.1:56437454-56437473	MS.gene63489:CDS	30.0%
ATATGGTCAAGGAGTTACTA+GGG	-	chr3.1:56436373-56436392	MS.gene63489:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	56435755	56437489	56435755	ID=MS.gene63489
chr3.1	mRNA	56435755	56437489	56435755	ID=MS.gene63489.t1;Parent=MS.gene63489
chr3.1	exon	56437376	56437489	56437376	ID=MS.gene63489.t1.exon1;Parent=MS.gene63489.t1
chr3.1	CDS	56437376	56437489	56437376	ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1
chr3.1	exon	56437156	56437290	56437156	ID=MS.gene63489.t1.exon2;Parent=MS.gene63489.t1
chr3.1	CDS	56437156	56437290	56437156	ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1
chr3.1	exon	56436787	56436882	56436787	ID=MS.gene63489.t1.exon3;Parent=MS.gene63489.t1
chr3.1	CDS	56436787	56436882	56436787	ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1
chr3.1	exon	56436584	56436656	56436584	ID=MS.gene63489.t1.exon4;Parent=MS.gene63489.t1
chr3.1	CDS	56436584	56436656	56436584	ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1
chr3.1	exon	56436421	56436482	56436421	ID=MS.gene63489.t1.exon5;Parent=MS.gene63489.t1
chr3.1	CDS	56436421	56436482	56436421	ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1
chr3.1	exon	56435755	56435844	56435755	ID=MS.gene63489.t1.exon6;Parent=MS.gene63489.t1
chr3.1	CDS	56435755	56435844	56435755	ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1

Gene Sequence

>MS.gene63489

ATGGCTCTTTTTCTGAACGCCTCTTTGCCTTCAACTTCCAAACCTCATCACCATCTCTTAAGGTCAACACCTTCCTCTTCAACCTGCTCACCAACTCCTATCTCTCTGTTTCTGGTTCGTATACTATACTAACTATACAATTTTATATTCATGAATCATCTTTCAAGTTTAACAATTCTCACTCTACCACTCTTCACAGGGAAGCAATCCAAAGCAAACTCACCAAGCATCTCAGAAACTCACATTATCATTCGGTGAATCAGTGTCTAGTGCAGCTCTAGTTGCTCTTCTATCTGCTTCTCTCTTCTTCGTTGATCCTGCACTTGCATTCAAGGTATATACTTAATAACTATGTATCGCCAACACTTCAATATGAATGTTTATCTGGTGTCCGACAAGTGTCAATGTTTTGTCGATGTTCGTATATGTGCTAGTGCTTCGTGGTGTGTCCGTATTTTGTTTGGTGTCCGTGTTTGTGTTAGTGTTTGTACTTCGTAGATAACTAATAATAATGTAATTTAACAGTTTGTAGTATTTAGATGAGATTGTTAAAGTTTTGTTCTTTTTTGGTTAACAAATAATGGGTATGGTTTGGTGATGAATGAAGGGTGGAGGGCCATATGGTCAAGGAGTTACTAGGGGACAAGATCTTTCTGGGAAAGATTTCAGTGGCAAGACACTCATCAAGCAAGACTTCAAAACGGTGTAATTTTTTATTTCTTCAAGAAAAAAAAAAAAAGTTTAAGTTGATTTGATGACGCGGATAGTCAAATTCGGTGTTTTAGATCAAAATGTAACATGTTATCTTATTCTTATTACTTGTTATATTACAGTCCATACTGCGTCAAGCCAATTTTAAAGGTGCAAAATTGTTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTTGGCCAACACCAAAAATGTATCACAATGAATGTAGTATACACACATGGTTTGTCATTTCCATTTACATTCAATATCTCCCCACCCGTTGTCATGTCAGGTGCTGATCTTTCGGATACTGATCTTAGAAGTGCAGACTTTTCCCTGGCAAATGTGACAAAGGTAAATCTTTTTTCATGCTCATTATGATAGGATCTGATGGGAATTTAATTTTATATAATTGCTGCTTATTACTAGTTAATAGATATCACCCTTAGTCCAATATAATTCAGTTTATTAACATGAGAACCTTTTCTTTGCTTTGTTGTTATCATCCTTGTTCAAAACTTTGCTTAATAGCAGTGATTGAAAGTAGGGAAATTGATAATAAACAGTTAAACACACAATTCCATTATTCAACAACCTAATAAACAGTTATACTTATATGTTCCTTTGTTATATTATTTGAAGAAGAGAAGTGATTAATGTCCAAAAGAATGTTAAGAAATTAAATTAAAATGGCAAATTAGAAGATTCAAGGGATATATCTTATAAGAGAGCTAATGAAATGTCATAAGTTTGTCCTGTCAAAAAAATCTTGTAGTGAACGCATACAAATCTGTTCTATATACTATACTATTTAGTCCTACAAGTATTAATTTAGCTGAAGCTGAAAATGTGCCTCAAATCACTGTAATTAACAAATGTTTTCTTCTGCCATTTCTCAATTTATTGTGTTGGCATTACTGCTTTCTGCAGGTAAATTTGAGCAATGCTAATTTGGAAGGTGCACTTGTAACGGGAAATACATCTTTTAAGGGATCCAATATTACAGGCGCCGGTATGTAG

Protein sequence

>MS.gene63489.t1

MALFLNASLPSTSKPHHHLLRSTPSSSTCSPTPISLFLGSNPKQTHQASQKLTLSFGESVSSAALVALLSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDTDLRSADFSLANVTKVNLSNANLEGALVTGNTSFKGSNITGAGM