Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63489.t1 | XP_024635440.1 | 96.8 | 188 | 6 | 0 | 1 | 188 | 1 | 188 | 4.40E-46 | 194.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63489.t1 | O22160 | 51.5 | 103 | 48 | 2 | 1 | 102 | 1 | 102 | 1.5e-13 | 77.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63489.t1 | A0A072V034 | 94.1 | 102 | 6 | 0 | 1 | 102 | 1 | 102 | 4.3e-43 | 184.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene63489 | 0.829093 | 6.24E-55 | -1.69E-46 |
| MS.gene049389 | MS.gene63489 | 0.806923 | 6.50E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene63489 | 0.849928 | 2.36E-60 | -1.69E-46 |
| MS.gene049491 | MS.gene63489 | 0.822623 | 2.15E-53 | -1.69E-46 |
| MS.gene049614 | MS.gene63489 | 0.818898 | 1.54E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene63489 | 0.852513 | 4.40E-61 | -1.69E-46 |
| MS.gene049662 | MS.gene63489 | 0.850502 | 1.63E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene63489 | 0.830544 | 2.77E-55 | -1.69E-46 |
| MS.gene049760 | MS.gene63489 | 0.852975 | 3.24E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene63489 | 0.810699 | 1.01E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene63489 | 0.91137 | 6.57E-83 | -1.69E-46 |
| MS.gene050301 | MS.gene63489 | 0.868053 | 8.69E-66 | -1.69E-46 |
| MS.gene050397 | MS.gene63489 | 0.822461 | 2.34E-53 | -1.69E-46 |
| MS.gene050404 | MS.gene63489 | 0.821323 | 4.29E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene63489 | 0.817252 | 3.63E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene63489 | 0.889691 | 1.93E-73 | -1.69E-46 |
| MS.gene050529 | MS.gene63489 | 0.839644 | 1.40E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene63489 | 0.805661 | 1.20E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene63489 | 0.887078 | 1.96E-72 | -1.69E-46 |
| MS.gene050770 | MS.gene63489 | 0.888293 | 6.71E-73 | -1.69E-46 |
| MS.gene050783 | MS.gene63489 | 0.876637 | 1.19E-68 | -1.69E-46 |
| MS.gene050812 | MS.gene63489 | 0.807157 | 5.80E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene63489 | 0.810074 | 1.38E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene63489 | 0.8939 | 4.08E-75 | -1.69E-46 |
| MS.gene05105 | MS.gene63489 | 0.821414 | 4.09E-53 | -1.69E-46 |
| MS.gene051228 | MS.gene63489 | 0.845409 | 4.14E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene63489 | 0.800494 | 1.40E-48 | -1.69E-46 |
| MS.gene051471 | MS.gene63489 | 0.862392 | 5.23E-64 | -1.69E-46 |
| MS.gene051582 | MS.gene63489 | 0.808858 | 2.52E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene63489 | 0.853954 | 1.70E-61 | -1.69E-46 |
| MS.gene051877 | MS.gene63489 | 0.828497 | 8.70E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene63489 | 0.888479 | 5.69E-73 | -1.69E-46 |
| MS.gene052178 | MS.gene63489 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene63489 | 0.816001 | 6.92E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene63489 | 0.800699 | 1.28E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene63489 | 0.805741 | 1.15E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene63489 | 0.890177 | 1.25E-73 | -1.69E-46 |
| MS.gene052310 | MS.gene63489 | 0.854207 | 1.44E-61 | -1.69E-46 |
| MS.gene052322 | MS.gene63489 | 0.808167 | 3.54E-50 | -1.69E-46 |
| MS.gene052326 | MS.gene63489 | 0.888686 | 4.74E-73 | -1.69E-46 |
| MS.gene052340 | MS.gene63489 | 0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene63489 | 0.825647 | 4.18E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene63489 | 0.80218 | 6.34E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene63489 | 0.840876 | 6.68E-58 | -1.69E-46 |
| MS.gene053103 | MS.gene63489 | 0.858864 | 6.15E-63 | -1.69E-46 |
| MS.gene053104 | MS.gene63489 | 0.857651 | 1.41E-62 | -1.69E-46 |
| MS.gene053107 | MS.gene63489 | 0.816642 | 4.98E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene63489 | 0.81737 | 3.42E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene63489 | 0.860698 | 1.72E-63 | -1.69E-46 |
| MS.gene053322 | MS.gene63489 | 0.887595 | 1.24E-72 | -1.69E-46 |
| MS.gene053557 | MS.gene63489 | 0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene63489 | 0.816353 | 5.78E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene63489 | 0.832778 | 7.78E-56 | -1.69E-46 |
| MS.gene053971 | MS.gene63489 | 0.800966 | 1.12E-48 | -1.69E-46 |
| MS.gene054123 | MS.gene63489 | 0.864209 | 1.43E-64 | -1.69E-46 |
| MS.gene054376 | MS.gene63489 | 0.897446 | 1.39E-76 | -1.69E-46 |
| MS.gene05455 | MS.gene63489 | 0.839739 | 1.32E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene63489 | 0.800753 | 1.24E-48 | -1.69E-46 |
| MS.gene054802 | MS.gene63489 | 0.87703 | 8.71E-69 | -1.69E-46 |
| MS.gene054803 | MS.gene63489 | 0.879348 | 1.34E-69 | -1.69E-46 |
| MS.gene054804 | MS.gene63489 | 0.879629 | 1.07E-69 | -1.69E-46 |
| MS.gene054955 | MS.gene63489 | 0.816053 | 6.74E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene63489 | 0.802262 | 6.10E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene63489 | 0.837238 | 5.85E-57 | -1.69E-46 |
| MS.gene055254 | MS.gene63489 | 0.901535 | 2.43E-78 | -1.69E-46 |
| MS.gene055277 | MS.gene63489 | 0.868891 | 4.66E-66 | -1.69E-46 |
| MS.gene055390 | MS.gene63489 | 0.843665 | 1.22E-58 | -1.69E-46 |
| MS.gene055397 | MS.gene63489 | 0.876862 | 9.96E-69 | -1.69E-46 |
| MS.gene055412 | MS.gene63489 | 0.818804 | 1.62E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene63489 | 0.854072 | 1.57E-61 | -1.69E-46 |
| MS.gene055428 | MS.gene63489 | 0.856522 | 3.04E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene63489 | 0.893699 | 4.93E-75 | -1.69E-46 |
| MS.gene055647 | MS.gene63489 | 0.819673 | 1.03E-52 | -1.69E-46 |
| MS.gene055712 | MS.gene63489 | 0.812204 | 4.77E-51 | -1.69E-46 |
| MS.gene055896 | MS.gene63489 | 0.857964 | 1.14E-62 | -1.69E-46 |
| MS.gene05592 | MS.gene63489 | 0.84247 | 2.54E-58 | -1.69E-46 |
| MS.gene05602 | MS.gene63489 | 0.815604 | 8.49E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene63489 | 0.812971 | 3.24E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene63489 | 0.803268 | 3.78E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene63489 | 0.803681 | 3.10E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene63489 | 0.856675 | 2.74E-62 | -1.69E-46 |
| MS.gene056410 | MS.gene63489 | 0.838293 | 3.13E-57 | -1.69E-46 |
| MS.gene056609 | MS.gene63489 | 0.867045 | 1.83E-65 | -1.69E-46 |
| MS.gene056612 | MS.gene63489 | 0.85198 | 6.23E-61 | -1.69E-46 |
| MS.gene056796 | MS.gene63489 | 0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene63489 | 0.814915 | 1.21E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene63489 | 0.849894 | 2.41E-60 | -1.69E-46 |
| MS.gene05702 | MS.gene63489 | 0.843371 | 1.46E-58 | -1.69E-46 |
| MS.gene057123 | MS.gene63489 | 0.840759 | 7.16E-58 | -1.69E-46 |
| MS.gene057129 | MS.gene63489 | 0.894678 | 1.97E-75 | -1.69E-46 |
| MS.gene057146 | MS.gene63489 | 0.838272 | 3.17E-57 | -1.69E-46 |
| MS.gene057246 | MS.gene63489 | 0.815796 | 7.69E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene63489 | 0.884004 | 2.78E-71 | -1.69E-46 |
| MS.gene05735 | MS.gene63489 | 0.81771 | 2.86E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene63489 | 0.824001 | 1.02E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene63489 | 0.806281 | 8.88E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene63489 | 0.834447 | 2.98E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene63489 | 0.833928 | 4.02E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene63489 | 0.872004 | 4.44E-67 | -1.69E-46 |
| MS.gene05811 | MS.gene63489 | 0.802265 | 6.09E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene63489 | 0.850328 | 1.82E-60 | -1.69E-46 |
| MS.gene058293 | MS.gene63489 | 0.904611 | 1.02E-79 | -1.69E-46 |
| MS.gene058323 | MS.gene63489 | 0.828674 | 7.88E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene63489 | 0.834313 | 3.22E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene63489 | 0.903256 | 4.19E-79 | -1.69E-46 |
| MS.gene058748 | MS.gene63489 | 0.807661 | 4.53E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene63489 | 0.853776 | 1.91E-61 | -1.69E-46 |
| MS.gene05907 | MS.gene63489 | 0.826146 | 3.18E-54 | -1.69E-46 |
| MS.gene059326 | MS.gene63489 | 0.825007 | 5.93E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene63489 | 0.800874 | 1.17E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene63489 | 0.813248 | 2.82E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene63489 | 0.864759 | 9.65E-65 | -1.69E-46 |
| MS.gene059597 | MS.gene63489 | 0.873972 | 9.71E-68 | -1.69E-46 |
| MS.gene05959 | MS.gene63489 | 0.820559 | 6.44E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene63489 | 0.850513 | 1.62E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene63489 | 0.872797 | 2.41E-67 | -1.69E-46 |
| MS.gene059692 | MS.gene63489 | 0.884922 | 1.27E-71 | -1.69E-46 |
| MS.gene059695 | MS.gene63489 | 0.885361 | 8.69E-72 | -1.69E-46 |
| MS.gene059708 | MS.gene63489 | 0.817512 | 3.17E-52 | -1.69E-46 |
| MS.gene059858 | MS.gene63489 | 0.812964 | 3.25E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene63489 | 0.846641 | 1.91E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene63489 | 0.895005 | 1.44E-75 | -1.69E-46 |
| MS.gene060005 | MS.gene63489 | 0.812861 | 3.43E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene63489 | 0.838313 | 3.10E-57 | -1.69E-46 |
| MS.gene060403 | MS.gene63489 | 0.817159 | 3.81E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene63489 | 0.86608 | 3.70E-65 | -1.69E-46 |
| MS.gene060818 | MS.gene63489 | 0.82139 | 4.14E-53 | -1.69E-46 |
| MS.gene06090 | MS.gene63489 | 0.804937 | 1.70E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene63489 | 0.845614 | 3.64E-59 | -1.69E-46 |
| MS.gene061049 | MS.gene63489 | 0.859756 | 3.32E-63 | -1.69E-46 |
| MS.gene061051 | MS.gene63489 | -0.861135 | 1.27E-63 | -1.69E-46 |
| MS.gene061112 | MS.gene63489 | 0.804761 | 1.85E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene63489 | 0.876831 | 1.02E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63489.t1 | MTR_3g068150 | 96.791 | 187 | 6 | 0 | 1 | 187 | 1 | 187 | 2.19e-126 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63489.t1 | AT2G44920 | 86.331 | 139 | 19 | 0 | 50 | 188 | 50 | 188 | 2.89e-81 | 240 |
| MS.gene63489.t1 | AT2G44920 | 86.232 | 138 | 19 | 0 | 50 | 187 | 50 | 187 | 2.47e-80 | 238 |
Find 44 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCTATCTCTCTGTTTC+TGG | 0.179667 | 3.1:-56437375 | MS.gene63489:intron |
| ACTAGGGGACAAGATCTTTC+TGG | 0.219620 | 3.1:-56436833 | MS.gene63489:CDS |
| AAATTTGAGCAATGCTAATT+TGG | 0.246193 | 3.1:-56435820 | MS.gene63489:CDS |
| CATACCGGCGCCTGTAATAT+TGG | 0.263857 | 3.1:+56435758 | None:intergenic |
| TTTAAAGGTGCAAAATTGTT+AGG | 0.294153 | 3.1:-56436613 | MS.gene63489:CDS |
| AAAATTGGCTTGACGCAGTA+TGG | 0.314554 | 3.1:+56436633 | None:intergenic |
| TTCTTCGATGCTGATTTAAC+AGG | 0.320279 | 3.1:-56436583 | MS.gene63489:intron |
| TTTAAGGGATCCAATATTAC+AGG | 0.328394 | 3.1:-56435768 | MS.gene63489:CDS |
| TGATCCTGCACTTGCATTCA+AGG | 0.342254 | 3.1:-56437155 | MS.gene63489:intron |
| GATGCTTGGTGAGTTTGCTT+TGG | 0.375494 | 3.1:+56437259 | None:intergenic |
| TAAGAGATGGTGATGAGGTT+TGG | 0.381918 | 3.1:+56437430 | None:intergenic |
| CATATGGTCAAGGAGTTACT+AGG | 0.385923 | 3.1:-56436850 | MS.gene63489:CDS |
| CTAGTAACTCCTTGACCATA+TGG | 0.403791 | 3.1:+56436851 | None:intergenic |
| CATGTCAGGTGCTGATCTTT+CGG | 0.407019 | 3.1:-56436468 | MS.gene63489:intron |
| TTGGAAGGTGCACTTGTAAC+GGG | 0.417101 | 3.1:-56435801 | MS.gene63489:CDS |
| CTAGGGGACAAGATCTTTCT+GGG | 0.423220 | 3.1:-56436832 | MS.gene63489:CDS |
| CGAACCAGAAACAGAGAGAT+AGG | 0.437434 | 3.1:+56437371 | None:intergenic |
| AACCTCATCACCATCTCTTA+AGG | 0.447203 | 3.1:-56437427 | MS.gene63489:CDS |
| AGAGATAGGAGTTGGTGAGC+AGG | 0.464069 | 3.1:+56437385 | None:intergenic |
| ATGAAGGGTGGAGGGCCATA+TGG | 0.474954 | 3.1:-56436866 | MS.gene63489:intron |
| TTACCTTTGTCACATTTGCC+AGG | 0.489767 | 3.1:+56436417 | None:intergenic |
| AGTTGGTGAGCAGGTTGAAG+AGG | 0.491050 | 3.1:+56437394 | None:intergenic |
| GGTGAGCAGGTTGAAGAGGA+AGG | 0.497485 | 3.1:+56437398 | None:intergenic |
| CAGAAACTCACATTATCATT+CGG | 0.504813 | 3.1:-56437235 | MS.gene63489:CDS |
| TTTGGAAGGTGCACTTGTAA+CGG | 0.505123 | 3.1:-56435802 | MS.gene63489:CDS |
| TTGAGCAATGCTAATTTGGA+AGG | 0.506866 | 3.1:-56435816 | MS.gene63489:CDS |
| TGGTGATGAATGAAGGGTGG+AGG | 0.551341 | 3.1:-56436875 | MS.gene63489:intron |
| AGAAACAGAGAGATAGGAGT+TGG | 0.558423 | 3.1:+56437377 | None:intergenic |
| TGATGAGGTTTGGAAGTTGA+AGG | 0.562107 | 3.1:+56437440 | None:intergenic |
| ATATGGTCAAGGAGTTACTA+GGG | 0.565044 | 3.1:-56436849 | MS.gene63489:CDS |
| TATACCTTGAATGCAAGTGC+AGG | 0.570494 | 3.1:+56437151 | None:intergenic |
| GGATCCAATATTACAGGCGC+CGG | 0.582010 | 3.1:-56435762 | MS.gene63489:CDS |
| GGTGGAGGGCCATATGGTCA+AGG | 0.584439 | 3.1:-56436860 | MS.gene63489:CDS |
| TACCTTTGTCACATTTGCCA+GGG | 0.587787 | 3.1:+56436418 | None:intergenic |
| TTCCCTGGCAAATGTGACAA+AGG | 0.601317 | 3.1:-56436420 | MS.gene63489:intron |
| ATGTGAGTTTCTGAGATGCT+TGG | 0.612261 | 3.1:+56437245 | None:intergenic |
| CTTTCTGGGAAAGATTTCAG+TGG | 0.615907 | 3.1:-56436818 | MS.gene63489:CDS |
| TTTGGAAGTTGAAGGCAAAG+AGG | 0.617513 | 3.1:+56437448 | None:intergenic |
| GGTGATGAATGAAGGGTGGA+GGG | 0.622244 | 3.1:-56436874 | MS.gene63489:intron |
| CATCAAGCAAGACTTCAAAA+CGG | 0.635311 | 3.1:-56436786 | MS.gene63489:intron |
| AAGGTGTTGACCTTAAGAGA+TGG | 0.643063 | 3.1:+56437417 | None:intergenic |
| GACCTTAAGAGATGGTGATG+AGG | 0.653487 | 3.1:+56437425 | None:intergenic |
| ATAGTGATACTACTACATAC+CGG | 0.658992 | 3.1:+56435743 | None:intergenic |
| TATGGTCAAGGAGTTACTAG+GGG | 0.721516 | 3.1:-56436848 | MS.gene63489:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAGAAATTAAATTAAAA+TGG | - | chr3.1:56437140-56437159 | MS.gene63489:intron | 10.0% |
| !! | GTTAATAAACTGAATTATAT+TGG | + | chr3.1:56436923-56436942 | None:intergenic | 15.0% |
| !! | TATAAGTATAACTGTTTATT+AGG | + | chr3.1:56437067-56437086 | None:intergenic | 15.0% |
| !! | TTCTTCAAATAATATAACAA+AGG | + | chr3.1:56437094-56437113 | None:intergenic | 15.0% |
| !!! | TTAATTTCTTAACATTCTTT+TGG | + | chr3.1:56437133-56437152 | None:intergenic | 15.0% |
| !!! | TTTTTTGGTTAACAAATAAT+GGG | - | chr3.1:56436317-56436336 | MS.gene63489:intron | 15.0% |
| !!! | CTTTTTTGGTTAACAAATAA+TGG | - | chr3.1:56436316-56436335 | MS.gene63489:intron | 20.0% |
| !!! | GTTAAAGTTTTGTTCTTTTT+TGG | - | chr3.1:56436302-56436321 | MS.gene63489:intron | 20.0% |
| !!! | TTTATTAGGTTGTTGAATAA+TGG | + | chr3.1:56437053-56437072 | None:intergenic | 20.0% |
| ! | AAACATTCATATTGAAGTGT+TGG | + | chr3.1:56436117-56436136 | None:intergenic | 25.0% |
| ! | AAATTTGAGCAATGCTAATT+TGG | - | chr3.1:56437402-56437421 | MS.gene63489:CDS | 25.0% |
| ! | AACTGAATTATATTGGACTA+AGG | + | chr3.1:56436916-56436935 | None:intergenic | 25.0% |
| ! | ACTGAATTATATTGGACTAA+GGG | + | chr3.1:56436915-56436934 | None:intergenic | 25.0% |
| ! | ATAACAACAAAGCAAAGAAA+AGG | + | chr3.1:56436953-56436972 | None:intergenic | 25.0% |
| ! | CAACACAATAAATTGAGAAA+TGG | + | chr3.1:56437361-56437380 | None:intergenic | 25.0% |
| ! | CATTTCTCAATTTATTGTGT+TGG | - | chr3.1:56437359-56437378 | MS.gene63489:intron | 25.0% |
| ! | CTTCAATATGAATGTTTATC+TGG | - | chr3.1:56436120-56436139 | MS.gene63489:intron | 25.0% |
| ! | TCAGCTAAATTAATACTTGT+AGG | + | chr3.1:56437289-56437308 | None:intergenic | 25.0% |
| ! | TTGTTAATTACAGTGATTTG+AGG | + | chr3.1:56437325-56437344 | None:intergenic | 25.0% |
| !! | CATTCATTGTGATACATTTT+TGG | + | chr3.1:56436676-56436695 | None:intergenic | 25.0% |
| !! | TTTAAAGGTGCAAAATTGTT+AGG | - | chr3.1:56436609-56436628 | MS.gene63489:CDS | 25.0% |
| !! | TTTTTCATGCTCATTATGAT+AGG | - | chr3.1:56436832-56436851 | MS.gene63489:CDS | 25.0% |
| !!! | ATTAAGCAAAGTTTTGAACA+AGG | + | chr3.1:56436979-56436998 | None:intergenic | 25.0% |
| !!! | CAATTTTGCACCTTTAAAAT+TGG | + | chr3.1:56436607-56436626 | None:intergenic | 25.0% |
| AATAGCAGTGATTGAAAGTA+GGG | - | chr3.1:56436996-56437015 | MS.gene63489:intron | 30.0% | |
| ATGAATGTAGTATACACACA+TGG | - | chr3.1:56436689-56436708 | MS.gene63489:intron | 30.0% | |
| ATGGCAAATTAGAAGATTCA+AGG | - | chr3.1:56437159-56437178 | MS.gene63489:CDS | 30.0% | |
| CAGAAACTCACATTATCATT+CGG | - | chr3.1:56435987-56436006 | MS.gene63489:intron | 30.0% | |
| TAATAGCAGTGATTGAAAGT+AGG | - | chr3.1:56436995-56437014 | MS.gene63489:intron | 30.0% | |
| TACAAACACTAACACAAACA+CGG | + | chr3.1:56436225-56436244 | None:intergenic | 30.0% | |
| TCATTATGATAGGATCTGAT+GGG | - | chr3.1:56436842-56436861 | MS.gene63489:CDS | 30.0% | |
| TGGCAAATTAGAAGATTCAA+GGG | - | chr3.1:56437160-56437179 | MS.gene63489:CDS | 30.0% | |
| TTTAAGGGATCCAATATTAC+AGG | - | chr3.1:56437454-56437473 | MS.gene63489:CDS | 30.0% | |
| ! | AACGGGAAATACATCTTTTA+AGG | - | chr3.1:56437438-56437457 | MS.gene63489:CDS | 30.0% |
| ! | ACGGGAAATACATCTTTTAA+GGG | - | chr3.1:56437439-56437458 | MS.gene63489:CDS | 30.0% |
| !! | AACAAATAATGGGTATGGTT+TGG | - | chr3.1:56436327-56436346 | MS.gene63489:intron | 30.0% |
| !! | TGGTTAACAAATAATGGGTA+TGG | - | chr3.1:56436322-56436341 | MS.gene63489:intron | 30.0% |
| !! | TTTAAGTTGATTTGATGACG+CGG | - | chr3.1:56436495-56436514 | MS.gene63489:intron | 30.0% |
| !!! | CACTACAAGATTTTTTTGAC+AGG | + | chr3.1:56437227-56437246 | None:intergenic | 30.0% |
| !!! | TTGTGATACATTTTTGGTGT+TGG | + | chr3.1:56436670-56436689 | None:intergenic | 30.0% |
| ATATGGTCAAGGAGTTACTA+GGG | - | chr3.1:56436373-56436392 | MS.gene63489:intron | 35.0% | |
| CATCAAGCAAGACTTCAAAA+CGG | - | chr3.1:56436436-56436455 | MS.gene63489:CDS | 35.0% | |
| CTCATTATGATAGGATCTGA+TGG | - | chr3.1:56436841-56436860 | MS.gene63489:CDS | 35.0% | |
| GACAAAACATTGACACTTGT+CGG | + | chr3.1:56436149-56436168 | None:intergenic | 35.0% | |
| GGGGAGATATTGAATGTAAA+TGG | + | chr3.1:56436725-56436744 | None:intergenic | 35.0% | |
| TTGAGCAATGCTAATTTGGA+AGG | - | chr3.1:56437406-56437425 | MS.gene63489:CDS | 35.0% | |
| !! | ATGGTTTGGTGATGAATGAA+GGG | - | chr3.1:56436341-56436360 | MS.gene63489:intron | 35.0% |
| !! | TATGGTTTGGTGATGAATGA+AGG | - | chr3.1:56436340-56436359 | MS.gene63489:intron | 35.0% |
| !! | TTCTTCGATGCTGATTTAAC+AGG | - | chr3.1:56436639-56436658 | MS.gene63489:intron | 35.0% |
| AACCTCATCACCATCTCTTA+AGG | - | chr3.1:56435795-56435814 | MS.gene63489:CDS | 40.0% | |
| AACTCCTATCTCTCTGTTTC+TGG | - | chr3.1:56435847-56435866 | MS.gene63489:intron | 40.0% | |
| AGAAACAGAGAGATAGGAGT+TGG | + | chr3.1:56435848-56435867 | None:intergenic | 40.0% | |
| ATGACGCGGATAGTCAAATT+CGG | - | chr3.1:56436509-56436528 | MS.gene63489:intron | 40.0% | |
| CACGGACACCAAACAAAATA+CGG | + | chr3.1:56436207-56436226 | None:intergenic | 40.0% | |
| CATATGGTCAAGGAGTTACT+AGG | - | chr3.1:56436372-56436391 | MS.gene63489:intron | 40.0% | |
| CTAGTAACTCCTTGACCATA+TGG | + | chr3.1:56436374-56436393 | None:intergenic | 40.0% | |
| TACCTTTGTCACATTTGCCA+GGG | + | chr3.1:56436807-56436826 | None:intergenic | 40.0% | |
| TATACCTTGAATGCAAGTGC+AGG | + | chr3.1:56436074-56436093 | None:intergenic | 40.0% | |
| TATGGTCAAGGAGTTACTAG+GGG | - | chr3.1:56436374-56436393 | MS.gene63489:intron | 40.0% | |
| TGATGAGGTTTGGAAGTTGA+AGG | + | chr3.1:56435785-56435804 | None:intergenic | 40.0% | |
| TTACCTTTGTCACATTTGCC+AGG | + | chr3.1:56436808-56436827 | None:intergenic | 40.0% | |
| TTTGGAAGTTGAAGGCAAAG+AGG | + | chr3.1:56435777-56435796 | None:intergenic | 40.0% | |
| ! | CTGCGTCAAGCCAATTTTAA+AGG | - | chr3.1:56436594-56436613 | MS.gene63489:CDS | 40.0% |
| ! | CTTTCTGGGAAAGATTTCAG+TGG | - | chr3.1:56436404-56436423 | MS.gene63489:intron | 40.0% |
| ! | TAAGAGATGGTGATGAGGTT+TGG | + | chr3.1:56435795-56435814 | None:intergenic | 40.0% |
| ! | TGGTGTGTCCGTATTTTGTT+TGG | - | chr3.1:56436196-56436215 | MS.gene63489:intron | 40.0% |
| ! | TTTGGAAGGTGCACTTGTAA+CGG | - | chr3.1:56437420-56437439 | MS.gene63489:CDS | 40.0% |
| !! | AAAATTGGCTTGACGCAGTA+TGG | + | chr3.1:56436592-56436611 | None:intergenic | 40.0% |
| !! | AAGGTGTTGACCTTAAGAGA+TGG | + | chr3.1:56435808-56435827 | None:intergenic | 40.0% |
| !! | ATGTGAGTTTCTGAGATGCT+TGG | + | chr3.1:56435980-56435999 | None:intergenic | 40.0% |
| !! | CGATGCTGATTTAACAGGTT+TGG | - | chr3.1:56436644-56436663 | MS.gene63489:intron | 40.0% |
| ACTAGGGGACAAGATCTTTC+TGG | - | chr3.1:56436389-56436408 | MS.gene63489:intron | 45.0% | |
| ATCAGCACCTGACATGACAA+CGG | + | chr3.1:56436750-56436769 | None:intergenic | 45.0% | |
| CGAACCAGAAACAGAGAGAT+AGG | + | chr3.1:56435854-56435873 | None:intergenic | 45.0% | |
| CTAGGGGACAAGATCTTTCT+GGG | - | chr3.1:56436390-56436409 | MS.gene63489:intron | 45.0% | |
| GTATATGTGCTAGTGCTTCG+TGG | - | chr3.1:56436176-56436195 | MS.gene63489:intron | 45.0% | |
| TCACTCTACCACTCTTCACA+GGG | - | chr3.1:56435933-56435952 | MS.gene63489:intron | 45.0% | |
| TGATCCTGCACTTGCATTCA+AGG | - | chr3.1:56436067-56436086 | MS.gene63489:intron | 45.0% | |
| TTCCCTGGCAAATGTGACAA+AGG | - | chr3.1:56436802-56436821 | MS.gene63489:CDS | 45.0% | |
| TTGGCATTACTGCTTTCTGC+AGG | - | chr3.1:56437378-56437397 | MS.gene63489:CDS | 45.0% | |
| ! | GACCTTAAGAGATGGTGATG+AGG | + | chr3.1:56435800-56435819 | None:intergenic | 45.0% |
| ! | GATGCTTGGTGAGTTTGCTT+TGG | + | chr3.1:56435966-56435985 | None:intergenic | 45.0% |
| ! | TTGGAAGGTGCACTTGTAAC+GGG | - | chr3.1:56437421-56437440 | MS.gene63489:CDS | 45.0% |
| !! | CATGTCAGGTGCTGATCTTT+CGG | - | chr3.1:56436754-56436773 | MS.gene63489:intron | 45.0% |
| !! | GTTTGGTGATGAATGAAGGG+TGG | - | chr3.1:56436344-56436363 | MS.gene63489:intron | 45.0% |
| !! | TAGAAGTGCAGACTTTTCCC+TGG | - | chr3.1:56436787-56436806 | MS.gene63489:CDS | 45.0% |
| CATACCGGCGCCTGTAATAT+TGG | + | chr3.1:56437467-56437486 | None:intergenic | 50.0% | |
| CTCACTCTACCACTCTTCAC+AGG | - | chr3.1:56435932-56435951 | MS.gene63489:intron | 50.0% | |
| GATTGCTTCCCTGTGAAGAG+TGG | + | chr3.1:56435944-56435963 | None:intergenic | 50.0% | |
| GGATCCAATATTACAGGCGC+CGG | - | chr3.1:56437460-56437479 | MS.gene63489:CDS | 50.0% | |
| GGTGATGAATGAAGGGTGGA+GGG | - | chr3.1:56436348-56436367 | MS.gene63489:intron | 50.0% | |
| TCAGCACCTGACATGACAAC+GGG | + | chr3.1:56436749-56436768 | None:intergenic | 50.0% | |
| ! | TGGTGATGAATGAAGGGTGG+AGG | - | chr3.1:56436347-56436366 | MS.gene63489:intron | 50.0% |
| !! | AGAGATAGGAGTTGGTGAGC+AGG | + | chr3.1:56435840-56435859 | None:intergenic | 50.0% |
| !! | AGTTGGTGAGCAGGTTGAAG+AGG | + | chr3.1:56435831-56435850 | None:intergenic | 50.0% |
| ACCTGACATGACAACGGGTG+GGG | + | chr3.1:56436744-56436763 | None:intergenic | 55.0% | |
| ATGAAGGGTGGAGGGCCATA+TGG | - | chr3.1:56436356-56436375 | MS.gene63489:intron | 55.0% | |
| CACCTGACATGACAACGGGT+GGG | + | chr3.1:56436745-56436764 | None:intergenic | 55.0% | |
| ! | GGTGAGCAGGTTGAAGAGGA+AGG | + | chr3.1:56435827-56435846 | None:intergenic | 55.0% |
| GCACCTGACATGACAACGGG+TGG | + | chr3.1:56436746-56436765 | None:intergenic | 60.0% | |
| GGTGGAGGGCCATATGGTCA+AGG | - | chr3.1:56436362-56436381 | MS.gene63489:intron | 60.0% | |
| TCCCCACCCGTTGTCATGTC+AGG | - | chr3.1:56436740-56436759 | MS.gene63489:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 56435755 | 56437489 | 56435755 | ID=MS.gene63489 |
| chr3.1 | mRNA | 56435755 | 56437489 | 56435755 | ID=MS.gene63489.t1;Parent=MS.gene63489 |
| chr3.1 | exon | 56437376 | 56437489 | 56437376 | ID=MS.gene63489.t1.exon1;Parent=MS.gene63489.t1 |
| chr3.1 | CDS | 56437376 | 56437489 | 56437376 | ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1 |
| chr3.1 | exon | 56437156 | 56437290 | 56437156 | ID=MS.gene63489.t1.exon2;Parent=MS.gene63489.t1 |
| chr3.1 | CDS | 56437156 | 56437290 | 56437156 | ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1 |
| chr3.1 | exon | 56436787 | 56436882 | 56436787 | ID=MS.gene63489.t1.exon3;Parent=MS.gene63489.t1 |
| chr3.1 | CDS | 56436787 | 56436882 | 56436787 | ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1 |
| chr3.1 | exon | 56436584 | 56436656 | 56436584 | ID=MS.gene63489.t1.exon4;Parent=MS.gene63489.t1 |
| chr3.1 | CDS | 56436584 | 56436656 | 56436584 | ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1 |
| chr3.1 | exon | 56436421 | 56436482 | 56436421 | ID=MS.gene63489.t1.exon5;Parent=MS.gene63489.t1 |
| chr3.1 | CDS | 56436421 | 56436482 | 56436421 | ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1 |
| chr3.1 | exon | 56435755 | 56435844 | 56435755 | ID=MS.gene63489.t1.exon6;Parent=MS.gene63489.t1 |
| chr3.1 | CDS | 56435755 | 56435844 | 56435755 | ID=cds.MS.gene63489.t1;Parent=MS.gene63489.t1 |
| Gene Sequence |
| Protein sequence |
