Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70468.t1 | XP_003601527.1 | 90.5 | 327 | 28 | 3 | 1 | 327 | 1 | 324 | 4.70E-128 | 467.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70468.t1 | G7J8U7 | 90.5 | 327 | 28 | 3 | 1 | 327 | 1 | 324 | 3.4e-128 | 467.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene70468 | 0.858693 | 6.92E-63 | -1.69E-46 |
| MS.gene049173 | MS.gene70468 | 0.821344 | 4.25E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene70468 | 0.845743 | 3.36E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene70468 | 0.846895 | 1.63E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene70468 | 0.893833 | 4.35E-75 | -1.69E-46 |
| MS.gene049320 | MS.gene70468 | 0.884666 | 1.58E-71 | -1.69E-46 |
| MS.gene04939 | MS.gene70468 | 0.824667 | 7.13E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene70468 | 0.801594 | 8.36E-49 | -1.69E-46 |
| MS.gene049627 | MS.gene70468 | 0.844806 | 6.02E-59 | -1.69E-46 |
| MS.gene049633 | MS.gene70468 | 0.819507 | 1.12E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene70468 | 0.844323 | 8.12E-59 | -1.69E-46 |
| MS.gene050163 | MS.gene70468 | 0.90565 | 3.43E-80 | -1.69E-46 |
| MS.gene050165 | MS.gene70468 | 0.913349 | 6.82E-84 | -1.69E-46 |
| MS.gene050323 | MS.gene70468 | 0.816769 | 4.66E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene70468 | 0.898086 | 7.49E-77 | -1.69E-46 |
| MS.gene050444 | MS.gene70468 | 0.822311 | 2.54E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene70468 | 0.902484 | 9.25E-79 | -1.69E-46 |
| MS.gene050518 | MS.gene70468 | 0.884765 | 1.45E-71 | -1.69E-46 |
| MS.gene050577 | MS.gene70468 | 0.846211 | 2.50E-59 | -1.69E-46 |
| MS.gene050612 | MS.gene70468 | 0.89783 | 9.60E-77 | -1.69E-46 |
| MS.gene050675 | MS.gene70468 | 0.862905 | 3.64E-64 | -1.69E-46 |
| MS.gene050699 | MS.gene70468 | 0.88095 | 3.60E-70 | -1.69E-46 |
| MS.gene050747 | MS.gene70468 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene050772 | MS.gene70468 | 0.839154 | 1.88E-57 | -1.69E-46 |
| MS.gene05080 | MS.gene70468 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene050876 | MS.gene70468 | 0.888654 | 4.87E-73 | -1.69E-46 |
| MS.gene05087 | MS.gene70468 | 0.832554 | 8.85E-56 | -1.69E-46 |
| MS.gene050904 | MS.gene70468 | 0.819565 | 1.09E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene70468 | 0.803222 | 3.86E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene70468 | 0.883615 | 3.86E-71 | -1.69E-46 |
| MS.gene05100 | MS.gene70468 | 0.853372 | 2.50E-61 | -1.69E-46 |
| MS.gene051228 | MS.gene70468 | 0.81251 | 4.09E-51 | -1.69E-46 |
| MS.gene051317 | MS.gene70468 | 0.8847 | 1.53E-71 | -1.69E-46 |
| MS.gene051434 | MS.gene70468 | 0.834801 | 2.43E-56 | -1.69E-46 |
| MS.gene051551 | MS.gene70468 | 0.819418 | 1.17E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene70468 | 0.875933 | 2.08E-68 | -1.69E-46 |
| MS.gene051949 | MS.gene70468 | 0.847475 | 1.13E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene70468 | 0.828516 | 8.61E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene70468 | 0.804456 | 2.14E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene70468 | 0.815191 | 1.05E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene70468 | 0.804987 | 1.66E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene70468 | 0.819794 | 9.63E-53 | -1.69E-46 |
| MS.gene052872 | MS.gene70468 | 0.818348 | 2.05E-52 | -1.69E-46 |
| MS.gene052916 | MS.gene70468 | 0.824152 | 9.42E-54 | -1.69E-46 |
| MS.gene052966 | MS.gene70468 | 0.810505 | 1.12E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene70468 | 0.813428 | 2.57E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene70468 | 0.815643 | 8.32E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene70468 | 0.855828 | 4.85E-62 | -1.69E-46 |
| MS.gene053284 | MS.gene70468 | 0.83139 | 1.72E-55 | -1.69E-46 |
| MS.gene053285 | MS.gene70468 | 0.818482 | 1.92E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene70468 | 0.859555 | 3.81E-63 | -1.69E-46 |
| MS.gene053632 | MS.gene70468 | 0.842171 | 3.04E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene70468 | 0.809107 | 2.23E-50 | -1.69E-46 |
| MS.gene054374 | MS.gene70468 | 0.826481 | 2.65E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene70468 | 0.859889 | 3.03E-63 | -1.69E-46 |
| MS.gene054642 | MS.gene70468 | 0.898517 | 4.91E-77 | -1.69E-46 |
| MS.gene05470 | MS.gene70468 | 0.839038 | 2.01E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene70468 | 0.886138 | 4.44E-72 | -1.69E-46 |
| MS.gene055362 | MS.gene70468 | 0.879697 | 1.01E-69 | -1.69E-46 |
| MS.gene055499 | MS.gene70468 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene70468 | 0.873873 | 1.05E-67 | -1.69E-46 |
| MS.gene055577 | MS.gene70468 | 0.868688 | 5.42E-66 | -1.69E-46 |
| MS.gene055634 | MS.gene70468 | 0.845249 | 4.57E-59 | -1.69E-46 |
| MS.gene055636 | MS.gene70468 | 0.823978 | 1.04E-53 | -1.69E-46 |
| MS.gene055638 | MS.gene70468 | 0.855218 | 7.31E-62 | -1.69E-46 |
| MS.gene055748 | MS.gene70468 | 0.86029 | 2.29E-63 | -1.69E-46 |
| MS.gene055750 | MS.gene70468 | 0.834856 | 2.35E-56 | -1.69E-46 |
| MS.gene055751 | MS.gene70468 | 0.868164 | 8.00E-66 | -1.69E-46 |
| MS.gene055776 | MS.gene70468 | 0.851485 | 8.61E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene70468 | 0.819185 | 1.33E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene70468 | 0.807722 | 4.40E-50 | -1.69E-46 |
| MS.gene055956 | MS.gene70468 | -0.802439 | 5.61E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene70468 | 0.830106 | 3.54E-55 | -1.69E-46 |
| MS.gene056409 | MS.gene70468 | 0.829107 | 6.19E-55 | -1.69E-46 |
| MS.gene056449 | MS.gene70468 | 0.807809 | 4.22E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene70468 | 0.849968 | 2.30E-60 | -1.69E-46 |
| MS.gene056510 | MS.gene70468 | 0.853343 | 2.55E-61 | -1.69E-46 |
| MS.gene056550 | MS.gene70468 | -0.811299 | 7.50E-51 | -1.69E-46 |
| MS.gene056610 | MS.gene70468 | 0.839249 | 1.77E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene70468 | 0.883235 | 5.33E-71 | -1.69E-46 |
| MS.gene056692 | MS.gene70468 | 0.87084 | 1.08E-66 | -1.69E-46 |
| MS.gene056898 | MS.gene70468 | 0.826744 | 2.29E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene70468 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene057148 | MS.gene70468 | 0.801413 | 9.11E-49 | -1.69E-46 |
| MS.gene057246 | MS.gene70468 | 0.801051 | 1.08E-48 | -1.69E-46 |
| MS.gene057416 | MS.gene70468 | 0.803563 | 3.28E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene70468 | 0.812737 | 3.65E-51 | -1.69E-46 |
| MS.gene057831 | MS.gene70468 | 0.84774 | 9.55E-60 | -1.69E-46 |
| MS.gene057986 | MS.gene70468 | 0.868222 | 7.67E-66 | -1.69E-46 |
| MS.gene05837 | MS.gene70468 | 0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene70468 | 0.873905 | 1.02E-67 | -1.69E-46 |
| MS.gene058544 | MS.gene70468 | 0.850176 | 2.01E-60 | -1.69E-46 |
| MS.gene058719 | MS.gene70468 | 0.823524 | 1.32E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene70468 | 0.83313 | 6.37E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene70468 | 0.895776 | 6.95E-76 | -1.69E-46 |
| MS.gene058838 | MS.gene70468 | 0.8177 | 2.88E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene70468 | 0.88791 | 9.42E-73 | -1.69E-46 |
| MS.gene059023 | MS.gene70468 | 0.873415 | 1.50E-67 | -1.69E-46 |
| MS.gene059029 | MS.gene70468 | 0.820934 | 5.28E-53 | -1.69E-46 |
| MS.gene059079 | MS.gene70468 | 0.850072 | 2.15E-60 | -1.69E-46 |
| MS.gene05912 | MS.gene70468 | 0.801497 | 8.76E-49 | -1.69E-46 |
| MS.gene059479 | MS.gene70468 | -0.809309 | 2.02E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene70468 | 0.904381 | 1.30E-79 | -1.69E-46 |
| MS.gene059718 | MS.gene70468 | 0.864642 | 1.05E-64 | -1.69E-46 |
| MS.gene059756 | MS.gene70468 | 0.836022 | 1.19E-56 | -1.69E-46 |
| MS.gene059801 | MS.gene70468 | 0.815176 | 1.06E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene70468 | 0.843486 | 1.36E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene70468 | 0.805665 | 1.20E-49 | -1.69E-46 |
| MS.gene060337 | MS.gene70468 | -0.822954 | 1.80E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene70468 | 0.884741 | 1.48E-71 | -1.69E-46 |
| MS.gene060728 | MS.gene70468 | 0.803466 | 3.44E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene70468 | 0.863087 | 3.20E-64 | -1.69E-46 |
| MS.gene06077 | MS.gene70468 | 0.864542 | 1.13E-64 | -1.69E-46 |
| MS.gene06092 | MS.gene70468 | 0.838243 | 3.23E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene70468 | 0.85877 | 6.56E-63 | -1.69E-46 |
| MS.gene061150 | MS.gene70468 | 0.890689 | 7.85E-74 | -1.69E-46 |
| MS.gene061200 | MS.gene70468 | 0.803139 | 4.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70468.t1 | MTR_3g082680 | 88.218 | 331 | 28 | 5 | 1 | 327 | 1 | 324 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70468.t1 | AT2G04360 | 60.806 | 273 | 103 | 2 | 55 | 327 | 49 | 317 | 1.49e-120 | 350 |
| MS.gene70468.t1 | AT2G04360 | 52.866 | 314 | 103 | 3 | 55 | 327 | 49 | 358 | 2.13e-112 | 330 |
| MS.gene70468.t1 | AT2G04360 | 68.116 | 207 | 63 | 1 | 121 | 327 | 17 | 220 | 6.33e-103 | 301 |
| MS.gene70468.t1 | AT2G04360 | 56.881 | 218 | 89 | 3 | 55 | 271 | 49 | 262 | 1.49e-85 | 259 |
Find 71 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAACACTGGCACCATTT+TGG | 0.187033 | 3.1:+66622018 | MS.gene70468:CDS |
| ATATTACCGGTGTCTGGTTT+GGG | 0.250210 | 3.1:-66620392 | None:intergenic |
| TGTTTCTGAATGGTATATTA+TGG | 0.293647 | 3.1:+66620575 | MS.gene70468:CDS |
| ATGATATGACTGCTAGAAAA+TGG | 0.306456 | 3.1:+66622048 | MS.gene70468:CDS |
| AGTTTCATTGATACCATTGC+TGG | 0.307701 | 3.1:+66622203 | MS.gene70468:CDS |
| AATCAGATATTGCTTGCTTC+GGG | 0.314268 | 3.1:+66621663 | MS.gene70468:intron |
| GTTTCTGAATGGTATATTAT+GGG | 0.317642 | 3.1:+66620576 | MS.gene70468:CDS |
| TATTATGGGTTTGTGGCCTT+TGG | 0.341981 | 3.1:+66620590 | MS.gene70468:CDS |
| ACAGGTTTGACAAAGGTTCT+TGG | 0.347641 | 3.1:+66622172 | MS.gene70468:intron |
| ATATCATTGTAAACCCAAAA+TGG | 0.351254 | 3.1:-66622032 | None:intergenic |
| TTAAGTTGTGTTTCTTCAAC+AGG | 0.358500 | 3.1:-66621400 | None:intergenic |
| TATATTACCGGTGTCTGGTT+TGG | 0.369304 | 3.1:-66620393 | None:intergenic |
| GGTTTCCATAGCACAAAATA+AGG | 0.372685 | 3.1:-66621367 | None:intergenic |
| ATTTGCTTTCCCTGAAGTAC+TGG | 0.383210 | 3.1:-66621743 | None:intergenic |
| TTGCTGCTACACCATCATTT+CGG | 0.385003 | 3.1:+66620211 | MS.gene70468:CDS |
| AGCAATGGTATCAATGAAAC+TGG | 0.385121 | 3.1:-66622201 | None:intergenic |
| AACAATAACAGTAGTGGCCT+CGG | 0.412664 | 3.1:+66620128 | MS.gene70468:CDS |
| AAGTTACAAGTTACAAGATT+GGG | 0.413662 | 3.1:-66620069 | None:intergenic |
| GAAGTTACAAGTTACAAGAT+TGG | 0.425120 | 3.1:-66620070 | None:intergenic |
| ATAATTTACGCTAGTTTAGC+CGG | 0.429459 | 3.1:+66621696 | MS.gene70468:CDS |
| TTGAATTTGAAAGGAGATGA+TGG | 0.440690 | 3.1:+66620531 | MS.gene70468:CDS |
| GGTAACTTGACTCTCTTTGT+TGG | 0.445634 | 3.1:-66620265 | None:intergenic |
| TAGTATATATTACCGGTGTC+TGG | 0.446627 | 3.1:-66620398 | None:intergenic |
| ATATTGCTTGCTTCGGGGAT+AGG | 0.448524 | 3.1:+66621669 | MS.gene70468:CDS |
| CTCCACAACACTGCTGTTGT+TGG | 0.454329 | 3.1:-66620286 | None:intergenic |
| GAATCAGATATTGCTTGCTT+CGG | 0.458917 | 3.1:+66621662 | MS.gene70468:intron |
| AATGGTATATTATGGGTTTG+TGG | 0.460874 | 3.1:+66620583 | MS.gene70468:CDS |
| TCTTCAACAGGAGGCGGTGG+AGG | 0.472797 | 3.1:-66621388 | None:intergenic |
| GTTTCATTGATACCATTGCT+GGG | 0.486547 | 3.1:+66622204 | MS.gene70468:CDS |
| CAACAGCAGTGTTGTGGAGG+AGG | 0.487609 | 3.1:+66620290 | MS.gene70468:CDS |
| TTCTTTCCACACATCTTCCC+CGG | 0.488058 | 3.1:-66621715 | None:intergenic |
| TGGATTCACTCAGACTCAAC+AGG | 0.489510 | 3.1:-66622285 | None:intergenic |
| CTACTCTTTCTCCGAAATGA+TGG | 0.494266 | 3.1:-66620222 | None:intergenic |
| GCAGACAGGAAGGGCCATAC+AGG | 0.516734 | 3.1:-66621313 | None:intergenic |
| TAATTTACGCTAGTTTAGCC+GGG | 0.521606 | 3.1:+66621697 | MS.gene70468:CDS |
| TGAGAGTAAAGTAAAATCAA+TGG | 0.530434 | 3.1:-66622000 | None:intergenic |
| AGGAGTTTGTGCAATGGCAG+AGG | 0.533565 | 3.1:-66622265 | None:intergenic |
| AGCATGCTGTTACTTCCCAC+TGG | 0.534575 | 3.1:+66620618 | MS.gene70468:CDS |
| TGTTACTTCCCACTGGAAGA+AGG | 0.536692 | 3.1:+66620625 | MS.gene70468:CDS |
| CTGCTTTATACATTCTCCTA+CGG | 0.539301 | 3.1:+66622229 | MS.gene70468:CDS |
| ATCAAGTGCTTGTTTCTGAA+TGG | 0.542025 | 3.1:+66620565 | MS.gene70468:CDS |
| GTTTCTTCAACAGGAGGCGG+TGG | 0.547408 | 3.1:-66621391 | None:intergenic |
| CGTAGGAGAATGTATAAAGC+AGG | 0.556966 | 3.1:-66622228 | None:intergenic |
| TACCAACAACAGCAGTGTTG+TGG | 0.561620 | 3.1:+66620284 | MS.gene70468:CDS |
| ACAATAACAGTAGTGGCCTC+GGG | 0.564855 | 3.1:+66620129 | MS.gene70468:CDS |
| AGGTTGATAGTGAGGGCCGT+AGG | 0.564890 | 3.1:-66622245 | None:intergenic |
| TGTGTTTCTTCAACAGGAGG+CGG | 0.566833 | 3.1:-66621394 | None:intergenic |
| TAAAATCAATGGACATAACA+TGG | 0.590376 | 3.1:-66621989 | None:intergenic |
| TATAAAGCAGGCCCCAGCAA+TGG | 0.590930 | 3.1:-66622216 | None:intergenic |
| AGCAGTGTTGTGGAGGAGGA+AGG | 0.592189 | 3.1:+66620294 | MS.gene70468:CDS |
| GGGAAATACCTTCTTCCAGT+GGG | 0.602141 | 3.1:-66620633 | None:intergenic |
| AGTTGTGTTTCTTCAACAGG+AGG | 0.602142 | 3.1:-66621397 | None:intergenic |
| TTTCATTGATACCATTGCTG+GGG | 0.604297 | 3.1:+66622205 | MS.gene70468:CDS |
| TATTACCGGTGTCTGGTTTG+GGG | 0.608819 | 3.1:-66620391 | None:intergenic |
| TGGGAAATACCTTCTTCCAG+TGG | 0.612952 | 3.1:-66620634 | None:intergenic |
| GAAAGCAACAATAACAGTAG+TGG | 0.613050 | 3.1:+66620122 | MS.gene70468:CDS |
| TCTCTCCCCAAACCAGACAC+CGG | 0.613768 | 3.1:+66620386 | MS.gene70468:CDS |
| GTTTAGCCGGGGAAGATGTG+TGG | 0.614056 | 3.1:+66621709 | MS.gene70468:CDS |
| TCAATATACAGGTTTGACAA+AGG | 0.614796 | 3.1:+66622165 | MS.gene70468:intron |
| ATCAGATATTGCTTGCTTCG+GGG | 0.617901 | 3.1:+66621664 | MS.gene70468:intron |
| CAACAACAGCAGTGTTGTGG+AGG | 0.624485 | 3.1:+66620287 | MS.gene70468:CDS |
| AACAGCATGCTATATACCAA+AGG | 0.624686 | 3.1:-66620606 | None:intergenic |
| AATGGCAGAGGTTGATAGTG+AGG | 0.627029 | 3.1:-66622253 | None:intergenic |
| ATGGCAGAGGTTGATAGTGA+GGG | 0.631651 | 3.1:-66622252 | None:intergenic |
| TGATGGTGTAGCAGCAACAG+AGG | 0.642844 | 3.1:-66620205 | None:intergenic |
| CTCAACAGGAGTTTGTGCAA+TGG | 0.646011 | 3.1:-66622271 | None:intergenic |
| GGAATCGAAAGTCACTGCAA+CGG | 0.649464 | 3.1:+66621444 | MS.gene70468:CDS |
| AAGAAACACAACTTAAAACA+TGG | 0.655934 | 3.1:+66621407 | MS.gene70468:CDS |
| GATGGTGTAGCAGCAACAGA+GGG | 0.657144 | 3.1:-66620204 | None:intergenic |
| TAATCTGCAACAACATCCCG+AGG | 0.679788 | 3.1:-66620145 | None:intergenic |
| AATTTACGCTAGTTTAGCCG+GGG | 0.690077 | 3.1:+66621698 | MS.gene70468:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATATAGTATGATA+GGG | - | chr3.1:66622132-66622151 | None:intergenic | 15.0% |
| !!! | TATCTTTTATATAGTATGAT+AGG | - | chr3.1:66622133-66622152 | None:intergenic | 15.0% |
| !! | AATCATCAAAAATTTAAGCA+CGG | + | chr3.1:66621002-66621021 | MS.gene70468:intron | 20.0% |
| !! | AGCTTAAAATAATGAATACA+AGG | - | chr3.1:66621813-66621832 | None:intergenic | 20.0% |
| !! | GATAAGATAGTATATATTAC+CGG | - | chr3.1:66620408-66620427 | None:intergenic | 20.0% |
| !! | TAAATAATAGTATCCATGAT+TGG | + | chr3.1:66621524-66621543 | MS.gene70468:intron | 20.0% |
| !! | TAGTAAATTGAGTGAATAAT+AGG | - | chr3.1:66620681-66620700 | None:intergenic | 20.0% |
| !! | TTCGATTCCAAAAAATTTAA+TGG | - | chr3.1:66621433-66621452 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTGAATTTGAA+AGG | + | chr3.1:66620522-66620541 | MS.gene70468:CDS | 20.0% |
| !!! | AATTTTACTCTTTCTCTTAT+GGG | + | chr3.1:66620338-66620357 | MS.gene70468:CDS | 20.0% |
| !!! | TTAAAAATATTCAGGTTTTC+TGG | - | chr3.1:66621610-66621629 | None:intergenic | 20.0% |
| !!! | TTTTCATAAGTTATCCTAAA+AGG | + | chr3.1:66620792-66620811 | MS.gene70468:intron | 20.0% |
| ! | AAGAAACACAACTTAAAACA+TGG | + | chr3.1:66621407-66621426 | MS.gene70468:CDS | 25.0% |
| ! | AAGTGAATCCTATATGAAAA+TGG | - | chr3.1:66620657-66620676 | None:intergenic | 25.0% |
| ! | AAGTTACAAGTTACAAGATT+GGG | - | chr3.1:66620072-66620091 | None:intergenic | 25.0% |
| ! | AATTATAATACTATCCTGAG+TGG | - | chr3.1:66621094-66621113 | None:intergenic | 25.0% |
| ! | AGTGAATCCTATATGAAAAT+GGG | - | chr3.1:66620656-66620675 | None:intergenic | 25.0% |
| ! | ATAATTCAATCAACAGTTAC+TGG | + | chr3.1:66621877-66621896 | MS.gene70468:intron | 25.0% |
| ! | ATATCATTGTAAACCCAAAA+TGG | - | chr3.1:66622035-66622054 | None:intergenic | 25.0% |
| ! | ATATTATAGCTAGCTAAGTT+TGG | - | chr3.1:66620932-66620951 | None:intergenic | 25.0% |
| ! | GTTTCTGAATGGTATATTAT+GGG | + | chr3.1:66620576-66620595 | MS.gene70468:CDS | 25.0% |
| ! | TAAAATCAATGGACATAACA+TGG | - | chr3.1:66621992-66622011 | None:intergenic | 25.0% |
| ! | TGAGAGTAAAGTAAAATCAA+TGG | - | chr3.1:66622003-66622022 | None:intergenic | 25.0% |
| !! | CAATTTTACTCTTTCTCTTA+TGG | + | chr3.1:66620337-66620356 | MS.gene70468:CDS | 25.0% |
| !! | CTAGTTATAATAAGCCTTTT+AGG | - | chr3.1:66620809-66620828 | None:intergenic | 25.0% |
| !! | TAACATTCAACCATTGTTTT+AGG | + | chr3.1:66621050-66621069 | MS.gene70468:intron | 25.0% |
| !! | TGTTTCTGAATGGTATATTA+TGG | + | chr3.1:66620575-66620594 | MS.gene70468:CDS | 25.0% |
| !!! | AACATGGCCATTAAATTTTT+TGG | + | chr3.1:66621423-66621442 | MS.gene70468:CDS | 25.0% |
| !!! | AACATTCAACCATTGTTTTA+GGG | + | chr3.1:66621051-66621070 | MS.gene70468:intron | 25.0% |
| !!! | ATTTTTTGTATTTCAGAGTG+GGG | - | chr3.1:66620095-66620114 | None:intergenic | 25.0% |
| !!! | GATTTTTTGTATTTCAGAGT+GGG | - | chr3.1:66620096-66620115 | None:intergenic | 25.0% |
| !!! | TGATTTTTTGTATTTCAGAG+TGG | - | chr3.1:66620097-66620116 | None:intergenic | 25.0% |
| !!! | TTATTAATTCTGAAATGCCA+GGG | - | chr3.1:66621153-66621172 | None:intergenic | 25.0% |
| AAAACTCTACAGAATGTAAG+AGG | - | chr3.1:66621122-66621141 | None:intergenic | 30.0% | |
| AACAACATTGTTTACATAGC+AGG | - | chr3.1:66621222-66621241 | None:intergenic | 30.0% | |
| AATGGTATATTATGGGTTTG+TGG | + | chr3.1:66620583-66620602 | MS.gene70468:CDS | 30.0% | |
| AATGGTTGAATGTTACATCT+TGG | - | chr3.1:66621045-66621064 | None:intergenic | 30.0% | |
| ACAACATTGTTTACATAGCA+GGG | - | chr3.1:66621221-66621240 | None:intergenic | 30.0% | |
| ACAACCTAGTTAGTTACATT+AGG | + | chr3.1:66621922-66621941 | MS.gene70468:intron | 30.0% | |
| ACAACTTTACAATGTTAGGT+TGG | - | chr3.1:66621483-66621502 | None:intergenic | 30.0% | |
| ACGACGAGTTAAAAATATTC+AGG | - | chr3.1:66621618-66621637 | None:intergenic | 30.0% | |
| ATGAACAAAATCACCAATCA+TGG | - | chr3.1:66621540-66621559 | None:intergenic | 30.0% | |
| ATGATATGACTGCTAGAAAA+TGG | + | chr3.1:66622048-66622067 | MS.gene70468:CDS | 30.0% | |
| CAACAATTCTGTTACAAAGA+TGG | - | chr3.1:66620713-66620732 | None:intergenic | 30.0% | |
| CAACTTTACAATGTTAGGTT+GGG | - | chr3.1:66621482-66621501 | None:intergenic | 30.0% | |
| CTTCTCTAATATTGTTACGA+TGG | + | chr3.1:66621848-66621867 | MS.gene70468:intron | 30.0% | |
| GAAGTTACAAGTTACAAGAT+TGG | - | chr3.1:66620073-66620092 | None:intergenic | 30.0% | |
| TACAACAGGAGGTTATTATT+AGG | - | chr3.1:66621570-66621589 | None:intergenic | 30.0% | |
| TATATAGTATGATAGGGACT+AGG | - | chr3.1:66622126-66622145 | None:intergenic | 30.0% | |
| TCAATATACAGGTTTGACAA+AGG | + | chr3.1:66622165-66622184 | MS.gene70468:intron | 30.0% | |
| TGCAACAACTTTACAATGTT+AGG | - | chr3.1:66621487-66621506 | None:intergenic | 30.0% | |
| TTGAATTTGAAAGGAGATGA+TGG | + | chr3.1:66620531-66620550 | MS.gene70468:CDS | 30.0% | |
| ! | AACTCAGCTTTTCATATTGT+TGG | + | chr3.1:66621777-66621796 | MS.gene70468:intron | 30.0% |
| ! | AAGAATTTTTCCAGTACTTC+AGG | + | chr3.1:66621733-66621752 | MS.gene70468:CDS | 30.0% |
| ! | AGAATTTTTCCAGTACTTCA+GGG | + | chr3.1:66621734-66621753 | MS.gene70468:CDS | 30.0% |
| ! | ATAATTTACGCTAGTTTAGC+CGG | + | chr3.1:66621696-66621715 | MS.gene70468:CDS | 30.0% |
| ! | GCTTTCATTTTCATTACTAG+AGG | - | chr3.1:66620183-66620202 | None:intergenic | 30.0% |
| ! | GGTATTTCCCATTTTCATAT+AGG | + | chr3.1:66620646-66620665 | MS.gene70468:intron | 30.0% |
| ! | TTAAGTTGTGTTTCTTCAAC+AGG | - | chr3.1:66621403-66621422 | None:intergenic | 30.0% |
| ! | TTTTACTTTACTCTCAACAC+TGG | + | chr3.1:66622007-66622026 | MS.gene70468:CDS | 30.0% |
| !! | AGTTATTTCTGTAGTGAAAG+AGG | + | chr3.1:66620753-66620772 | MS.gene70468:intron | 30.0% |
| !! | ATTTTAGCAAGTTGCAGATT+TGG | - | chr3.1:66621948-66621967 | None:intergenic | 30.0% |
| !! | GTTATTAATTCTGAAATGCC+AGG | - | chr3.1:66621154-66621173 | None:intergenic | 30.0% |
| !!! | TAGAGTTTTAACTTATACCC+TGG | + | chr3.1:66621133-66621152 | MS.gene70468:intron | 30.0% |
| !!! | TGACGATTTAGTTTTTGCAT+TGG | + | chr3.1:66621255-66621274 | MS.gene70468:intron | 30.0% |
| !!! | TTCTTCCTTATTTTGTGCTA+TGG | + | chr3.1:66621362-66621381 | MS.gene70468:CDS | 30.0% |
| AAAAATGAAGCAGACAGGAA+GGG | - | chr3.1:66621325-66621344 | None:intergenic | 35.0% | |
| AACAGCATGCTATATACCAA+AGG | - | chr3.1:66620609-66620628 | None:intergenic | 35.0% | |
| AATCAGATATTGCTTGCTTC+GGG | + | chr3.1:66621663-66621682 | MS.gene70468:intron | 35.0% | |
| AGCAATGGTATCAATGAAAC+TGG | - | chr3.1:66622204-66622223 | None:intergenic | 35.0% | |
| AGTAAGAATGTGACTACAAC+AGG | - | chr3.1:66621584-66621603 | None:intergenic | 35.0% | |
| AGTTTCATTGATACCATTGC+TGG | + | chr3.1:66622203-66622222 | MS.gene70468:CDS | 35.0% | |
| CTGCTTTATACATTCTCCTA+CGG | + | chr3.1:66622229-66622248 | MS.gene70468:CDS | 35.0% | |
| GAAAGCAACAATAACAGTAG+TGG | + | chr3.1:66620122-66620141 | MS.gene70468:CDS | 35.0% | |
| GAATCAGATATTGCTTGCTT+CGG | + | chr3.1:66621662-66621681 | MS.gene70468:intron | 35.0% | |
| GGTTTCCATAGCACAAAATA+AGG | - | chr3.1:66621370-66621389 | None:intergenic | 35.0% | |
| GTAATGCTCGTTCAATATAC+AGG | + | chr3.1:66622154-66622173 | MS.gene70468:intron | 35.0% | |
| GTTTCATTGATACCATTGCT+GGG | + | chr3.1:66622204-66622223 | MS.gene70468:CDS | 35.0% | |
| TAGTATATATTACCGGTGTC+TGG | - | chr3.1:66620401-66620420 | None:intergenic | 35.0% | |
| TTGAACTGACCCTAAAACAA+TGG | - | chr3.1:66621063-66621082 | None:intergenic | 35.0% | |
| TTGGCCTAATGTAACTAACT+AGG | - | chr3.1:66621929-66621948 | None:intergenic | 35.0% | |
| TTTCATTGATACCATTGCTG+GGG | + | chr3.1:66622205-66622224 | MS.gene70468:CDS | 35.0% | |
| ! | TAATTTACGCTAGTTTAGCC+GGG | + | chr3.1:66621697-66621716 | MS.gene70468:CDS | 35.0% |
| !! | ATCAAGTGCTTGTTTCTGAA+TGG | + | chr3.1:66620565-66620584 | MS.gene70468:CDS | 35.0% |
| !! | ATCTGCAACTTGCTAAAATC+TGG | + | chr3.1:66621949-66621968 | MS.gene70468:intron | 35.0% |
| !! | TTCCTGTCTGCTTCATTTTT+CGG | + | chr3.1:66621325-66621344 | MS.gene70468:CDS | 35.0% |
| AACAATAACAGTAGTGGCCT+CGG | + | chr3.1:66620128-66620147 | MS.gene70468:CDS | 40.0% | |
| AAGAATGTGACTACAACAGG+AGG | - | chr3.1:66621581-66621600 | None:intergenic | 40.0% | |
| AATGATTCTGTCTGTAGTCG+AGG | + | chr3.1:66620484-66620503 | MS.gene70468:intron | 40.0% | |
| ACAGGTTTGACAAAGGTTCT+TGG | + | chr3.1:66622172-66622191 | MS.gene70468:intron | 40.0% | |
| ACCAATGTGATCGAAACGAA+GGG | - | chr3.1:66620981-66621000 | None:intergenic | 40.0% | |
| AGGAGGAAGGAAAAAGAGAT+TGG | + | chr3.1:66620307-66620326 | MS.gene70468:CDS | 40.0% | |
| AGTTGTGTTTCTTCAACAGG+AGG | - | chr3.1:66621400-66621419 | None:intergenic | 40.0% | |
| ATCAGATATTGCTTGCTTCG+GGG | + | chr3.1:66621664-66621683 | MS.gene70468:intron | 40.0% | |
| ATGATTCTGTCTGTAGTCGA+GGG | + | chr3.1:66620485-66620504 | MS.gene70468:intron | 40.0% | |
| ATTCCCACAAAGCTCAAAGT+AGG | - | chr3.1:66621182-66621201 | None:intergenic | 40.0% | |
| ATTTGCTTTCCCTGAAGTAC+TGG | - | chr3.1:66621746-66621765 | None:intergenic | 40.0% | |
| CAAAAAGCAGTGTTCCTGTA+TGG | + | chr3.1:66621299-66621318 | MS.gene70468:CDS | 40.0% | |
| CATTGTTTACATAGCAGGGT+CGG | - | chr3.1:66621217-66621236 | None:intergenic | 40.0% | |
| CGTAGGAGAATGTATAAAGC+AGG | - | chr3.1:66622231-66622250 | None:intergenic | 40.0% | |
| CTACTCTTTCTCCGAAATGA+TGG | - | chr3.1:66620225-66620244 | None:intergenic | 40.0% | |
| GAAAAATGAAGCAGACAGGA+AGG | - | chr3.1:66621326-66621345 | None:intergenic | 40.0% | |
| GGTAACTTGACTCTCTTTGT+TGG | - | chr3.1:66620268-66620287 | None:intergenic | 40.0% | |
| GTTCAATAGAGTTTCCACTC+AGG | + | chr3.1:66621077-66621096 | MS.gene70468:intron | 40.0% | |
| TAACTAGGTTGTAGCAGACT+AGG | - | chr3.1:66621914-66621933 | None:intergenic | 40.0% | |
| TACCAATGTGATCGAAACGA+AGG | - | chr3.1:66620982-66621001 | None:intergenic | 40.0% | |
| TATATTACCGGTGTCTGGTT+TGG | - | chr3.1:66620396-66620415 | None:intergenic | 40.0% | |
| TATTATGGGTTTGTGGCCTT+TGG | + | chr3.1:66620590-66620609 | MS.gene70468:CDS | 40.0% | |
| TCAATCAACAGTTACTGGAC+TGG | + | chr3.1:66621882-66621901 | MS.gene70468:intron | 40.0% | |
| TTGCTGCTACACCATCATTT+CGG | + | chr3.1:66620211-66620230 | MS.gene70468:CDS | 40.0% | |
| ! | AATTTACGCTAGTTTAGCCG+GGG | + | chr3.1:66621698-66621717 | MS.gene70468:CDS | 40.0% |
| ! | AGCTTTTCATATTGTTGGCC+TGG | + | chr3.1:66621782-66621801 | MS.gene70468:intron | 40.0% |
| ! | ATATTACCGGTGTCTGGTTT+GGG | - | chr3.1:66620395-66620414 | None:intergenic | 40.0% |
| ! | TTGCCTACTTTGAGCTTTGT+GGG | + | chr3.1:66621176-66621195 | MS.gene70468:intron | 40.0% |
| AATGAATACAAGGACGAGCC+AGG | - | chr3.1:66621803-66621822 | None:intergenic | 45.0% | |
| AATGTGATCGAAACGAAGGG+TGG | - | chr3.1:66620978-66620997 | None:intergenic | 45.0% | |
| ACAATAACAGTAGTGGCCTC+GGG | + | chr3.1:66620129-66620148 | MS.gene70468:CDS | 45.0% | |
| ACCCTTCGTTTCGATCACAT+TGG | + | chr3.1:66620977-66620996 | MS.gene70468:intron | 45.0% | |
| ATATTGCTTGCTTCGGGGAT+AGG | + | chr3.1:66621669-66621688 | MS.gene70468:CDS | 45.0% | |
| CACCGAAAAATGAAGCAGAC+AGG | - | chr3.1:66621330-66621349 | None:intergenic | 45.0% | |
| CTCAACAGGAGTTTGTGCAA+TGG | - | chr3.1:66622274-66622293 | None:intergenic | 45.0% | |
| CTTGCCTACTTTGAGCTTTG+TGG | + | chr3.1:66621175-66621194 | MS.gene70468:intron | 45.0% | |
| GGAATCGAAAGTCACTGCAA+CGG | + | chr3.1:66621444-66621463 | MS.gene70468:CDS | 45.0% | |
| GGGAAATACCTTCTTCCAGT+GGG | - | chr3.1:66620636-66620655 | None:intergenic | 45.0% | |
| TAATCTGCAACAACATCCCG+AGG | - | chr3.1:66620148-66620167 | None:intergenic | 45.0% | |
| TACCAACAACAGCAGTGTTG+TGG | + | chr3.1:66620284-66620303 | MS.gene70468:CDS | 45.0% | |
| TGGGAAATACCTTCTTCCAG+TGG | - | chr3.1:66620637-66620656 | None:intergenic | 45.0% | |
| TGTGTTTCTTCAACAGGAGG+CGG | - | chr3.1:66621397-66621416 | None:intergenic | 45.0% | |
| TTCTTTCCACACATCTTCCC+CGG | - | chr3.1:66621718-66621737 | None:intergenic | 45.0% | |
| ! | CTCAACACTGGCACCATTTT+GGG | + | chr3.1:66622019-66622038 | MS.gene70468:CDS | 45.0% |
| ! | TATTACCGGTGTCTGGTTTG+GGG | - | chr3.1:66620394-66620413 | None:intergenic | 45.0% |
| ! | TCTCAACACTGGCACCATTT+TGG | + | chr3.1:66622018-66622037 | MS.gene70468:CDS | 45.0% |
| ! | TGTTACTTCCCACTGGAAGA+AGG | + | chr3.1:66620625-66620644 | MS.gene70468:CDS | 45.0% |
| !! | AATGGCAGAGGTTGATAGTG+AGG | - | chr3.1:66622256-66622275 | None:intergenic | 45.0% |
| !! | ATGGCAGAGGTTGATAGTGA+GGG | - | chr3.1:66622255-66622274 | None:intergenic | 45.0% |
| !! | CTGTCTGCTTCATTTTTCGG+TGG | + | chr3.1:66621328-66621347 | MS.gene70468:CDS | 45.0% |
| !!! | GAACACTGCTTTTTGAGCTG+TGG | - | chr3.1:66621294-66621313 | None:intergenic | 45.0% |
| AGGAGTTTGTGCAATGGCAG+AGG | - | chr3.1:66622268-66622287 | None:intergenic | 50.0% | |
| CAACAACAGCAGTGTTGTGG+AGG | + | chr3.1:66620287-66620306 | MS.gene70468:CDS | 50.0% | |
| CTCCACAACACTGCTGTTGT+TGG | - | chr3.1:66620289-66620308 | None:intergenic | 50.0% | |
| GATGGTGTAGCAGCAACAGA+GGG | - | chr3.1:66620207-66620226 | None:intergenic | 50.0% | |
| TATAAAGCAGGCCCCAGCAA+TGG | - | chr3.1:66622219-66622238 | None:intergenic | 50.0% | |
| ! | AGCATGCTGTTACTTCCCAC+TGG | + | chr3.1:66620618-66620637 | MS.gene70468:CDS | 50.0% |
| ! | TGATGGTGTAGCAGCAACAG+AGG | - | chr3.1:66620208-66620227 | None:intergenic | 50.0% |
| ACGAAGGGTGGCATCATGCA+CGG | - | chr3.1:66620966-66620985 | None:intergenic | 55.0% | |
| AGCAGTGTTGTGGAGGAGGA+AGG | + | chr3.1:66620294-66620313 | MS.gene70468:CDS | 55.0% | |
| CAACAGCAGTGTTGTGGAGG+AGG | + | chr3.1:66620290-66620309 | MS.gene70468:CDS | 55.0% | |
| GTTTAGCCGGGGAAGATGTG+TGG | + | chr3.1:66621709-66621728 | MS.gene70468:CDS | 55.0% | |
| GTTTCTTCAACAGGAGGCGG+TGG | - | chr3.1:66621394-66621413 | None:intergenic | 55.0% | |
| TCTCTCCCCAAACCAGACAC+CGG | + | chr3.1:66620386-66620405 | MS.gene70468:CDS | 55.0% | |
| !! | AGGTTGATAGTGAGGGCCGT+AGG | - | chr3.1:66622248-66622267 | None:intergenic | 55.0% |
| GCAGACAGGAAGGGCCATAC+AGG | - | chr3.1:66621316-66621335 | None:intergenic | 60.0% | |
| TCTTCAACAGGAGGCGGTGG+AGG | - | chr3.1:66621391-66621410 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66620048 | 66622302 | 66620048 | ID=MS.gene70468 |
| chr3.1 | mRNA | 66620048 | 66622302 | 66620048 | ID=MS.gene70468.t1;Parent=MS.gene70468 |
| chr3.1 | exon | 66620048 | 66620407 | 66620048 | ID=MS.gene70468.t1.exon1;Parent=MS.gene70468.t1 |
| chr3.1 | CDS | 66620048 | 66620407 | 66620048 | ID=cds.MS.gene70468.t1;Parent=MS.gene70468.t1 |
| chr3.1 | exon | 66620501 | 66620646 | 66620501 | ID=MS.gene70468.t1.exon2;Parent=MS.gene70468.t1 |
| chr3.1 | CDS | 66620501 | 66620646 | 66620501 | ID=cds.MS.gene70468.t1;Parent=MS.gene70468.t1 |
| chr3.1 | exon | 66621297 | 66621465 | 66621297 | ID=MS.gene70468.t1.exon3;Parent=MS.gene70468.t1 |
| chr3.1 | CDS | 66621297 | 66621465 | 66621297 | ID=cds.MS.gene70468.t1;Parent=MS.gene70468.t1 |
| chr3.1 | exon | 66621669 | 66621767 | 66621669 | ID=MS.gene70468.t1.exon4;Parent=MS.gene70468.t1 |
| chr3.1 | CDS | 66621669 | 66621767 | 66621669 | ID=cds.MS.gene70468.t1;Parent=MS.gene70468.t1 |
| chr3.1 | exon | 66621987 | 66622069 | 66621987 | ID=MS.gene70468.t1.exon5;Parent=MS.gene70468.t1 |
| chr3.1 | CDS | 66621987 | 66622069 | 66621987 | ID=cds.MS.gene70468.t1;Parent=MS.gene70468.t1 |
| chr3.1 | exon | 66622176 | 66622302 | 66622176 | ID=MS.gene70468.t1.exon6;Parent=MS.gene70468.t1 |
| chr3.1 | CDS | 66622176 | 66622302 | 66622176 | ID=cds.MS.gene70468.t1;Parent=MS.gene70468.t1 |
| Gene Sequence |
| Protein sequence |
