Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72786.t1 | XP_003612553.1 | 87.8 | 573 | 22 | 2 | 1 | 525 | 1 | 573 | 2.90E-273 | 950.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72786.t1 | F4I9E1 | 50.5 | 568 | 199 | 8 | 1 | 519 | 37 | 571 | 2.7e-142 | 506.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72786.t1 | G7K5G1 | 87.8 | 573 | 22 | 2 | 1 | 525 | 1 | 573 | 2.1e-273 | 950.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene72786 | 0.810532 | 1.10E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene72786 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene72786 | 0.818658 | 1.75E-52 | -1.69E-46 |
| MS.gene049232 | MS.gene72786 | 0.815453 | 9.17E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene72786 | 0.805106 | 1.57E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene72786 | 0.824066 | 9.87E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene72786 | 0.845323 | 4.36E-59 | -1.69E-46 |
| MS.gene049656 | MS.gene72786 | 0.804186 | 2.44E-49 | -1.69E-46 |
| MS.gene049865 | MS.gene72786 | 0.835148 | 1.99E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene72786 | 0.803763 | 2.98E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene72786 | 0.873724 | 1.18E-67 | -1.69E-46 |
| MS.gene050323 | MS.gene72786 | 0.856858 | 2.42E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene72786 | 0.837402 | 5.31E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene72786 | 0.80962 | 1.73E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene72786 | 0.805042 | 1.62E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene72786 | 0.804441 | 2.16E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene72786 | 0.801566 | 8.48E-49 | -1.69E-46 |
| MS.gene050697 | MS.gene72786 | 0.820483 | 6.70E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene72786 | 0.810953 | 8.92E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene72786 | 0.830259 | 3.25E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene72786 | 0.807921 | 3.99E-50 | -1.69E-46 |
| MS.gene05081 | MS.gene72786 | 0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene72786 | 0.847502 | 1.11E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene72786 | 0.84925 | 3.65E-60 | -1.69E-46 |
| MS.gene050904 | MS.gene72786 | 0.819887 | 9.17E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene72786 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene72786 | 0.800063 | 1.72E-48 | -1.69E-46 |
| MS.gene051268 | MS.gene72786 | 0.806482 | 8.05E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene72786 | 0.804522 | 2.07E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene72786 | 0.80663 | 7.49E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene72786 | 0.848344 | 6.51E-60 | -1.69E-46 |
| MS.gene051858 | MS.gene72786 | 0.835006 | 2.16E-56 | -1.69E-46 |
| MS.gene051874 | MS.gene72786 | 0.80635 | 8.58E-50 | -1.69E-46 |
| MS.gene051941 | MS.gene72786 | 0.823333 | 1.47E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene72786 | 0.829966 | 3.83E-55 | -1.69E-46 |
| MS.gene052346 | MS.gene72786 | 0.821425 | 4.07E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene72786 | 0.818742 | 1.67E-52 | -1.69E-46 |
| MS.gene052486 | MS.gene72786 | 0.847546 | 1.08E-59 | -1.69E-46 |
| MS.gene052501 | MS.gene72786 | 0.804807 | 1.81E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene72786 | 0.845006 | 5.32E-59 | -1.69E-46 |
| MS.gene052506 | MS.gene72786 | 0.816651 | 4.96E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene72786 | 0.818242 | 2.17E-52 | -1.69E-46 |
| MS.gene052822 | MS.gene72786 | 0.812657 | 3.80E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene72786 | 0.84271 | 2.19E-58 | -1.69E-46 |
| MS.gene052825 | MS.gene72786 | 0.841573 | 4.38E-58 | -1.69E-46 |
| MS.gene052872 | MS.gene72786 | 0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene72786 | 0.855395 | 6.49E-62 | -1.69E-46 |
| MS.gene053203 | MS.gene72786 | 0.839554 | 1.48E-57 | -1.69E-46 |
| MS.gene053420 | MS.gene72786 | -0.814952 | 1.19E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene72786 | 0.813679 | 2.27E-51 | -1.69E-46 |
| MS.gene053480 | MS.gene72786 | 0.863984 | 1.68E-64 | -1.69E-46 |
| MS.gene053574 | MS.gene72786 | 0.833547 | 5.01E-56 | -1.69E-46 |
| MS.gene053626 | MS.gene72786 | 0.816212 | 6.21E-52 | -1.69E-46 |
| MS.gene053633 | MS.gene72786 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene72786 | 0.874681 | 5.58E-68 | -1.69E-46 |
| MS.gene054344 | MS.gene72786 | 0.803784 | 2.95E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene72786 | 0.804279 | 2.33E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene72786 | 0.810192 | 1.30E-50 | -1.69E-46 |
| MS.gene054707 | MS.gene72786 | -0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene72786 | 0.822522 | 2.26E-53 | -1.69E-46 |
| MS.gene054927 | MS.gene72786 | 0.803482 | 3.41E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene72786 | 0.832891 | 7.30E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene72786 | 0.808753 | 2.65E-50 | -1.69E-46 |
| MS.gene055202 | MS.gene72786 | -0.810758 | 9.83E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene72786 | 0.813504 | 2.47E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene72786 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene72786 | 0.813746 | 2.19E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene72786 | 0.825035 | 5.84E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene72786 | 0.836171 | 1.09E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene72786 | 0.816125 | 6.50E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene72786 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene72786 | 0.873202 | 1.77E-67 | -1.69E-46 |
| MS.gene055941 | MS.gene72786 | 0.829954 | 3.85E-55 | -1.69E-46 |
| MS.gene056166 | MS.gene72786 | 0.822396 | 2.42E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene72786 | 0.850282 | 1.88E-60 | -1.69E-46 |
| MS.gene056504 | MS.gene72786 | 0.864986 | 8.19E-65 | -1.69E-46 |
| MS.gene056510 | MS.gene72786 | 0.821123 | 4.77E-53 | -1.69E-46 |
| MS.gene056549 | MS.gene72786 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene72786 | 0.804337 | 2.27E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene72786 | 0.810545 | 1.09E-50 | -1.69E-46 |
| MS.gene056878 | MS.gene72786 | 0.806772 | 6.99E-50 | -1.69E-46 |
| MS.gene056946 | MS.gene72786 | 0.824766 | 6.76E-54 | -1.69E-46 |
| MS.gene057019 | MS.gene72786 | 0.802267 | 6.08E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene72786 | 0.801698 | 7.96E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene72786 | 0.83908 | 1.96E-57 | -1.69E-46 |
| MS.gene057086 | MS.gene72786 | 0.813258 | 2.80E-51 | -1.69E-46 |
| MS.gene057173 | MS.gene72786 | -0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene72786 | 0.813144 | 2.97E-51 | -1.69E-46 |
| MS.gene057856 | MS.gene72786 | 0.836165 | 1.10E-56 | -1.69E-46 |
| MS.gene057857 | MS.gene72786 | 0.837998 | 3.73E-57 | -1.69E-46 |
| MS.gene05787 | MS.gene72786 | 0.804622 | 1.98E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene72786 | 0.88077 | 4.18E-70 | -1.69E-46 |
| MS.gene058338 | MS.gene72786 | 0.818623 | 1.78E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene72786 | 0.862387 | 5.25E-64 | -1.69E-46 |
| MS.gene058419 | MS.gene72786 | 0.813695 | 2.25E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene72786 | 0.843274 | 1.55E-58 | -1.69E-46 |
| MS.gene059022 | MS.gene72786 | 0.814609 | 1.41E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene72786 | 0.85455 | 1.14E-61 | -1.69E-46 |
| MS.gene05913 | MS.gene72786 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene059303 | MS.gene72786 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene72786 | 0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene72786 | 0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene72786 | 0.829773 | 4.27E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene72786 | 0.822911 | 1.84E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene72786 | 0.825921 | 3.60E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene72786 | 0.823154 | 1.61E-53 | -1.69E-46 |
| MS.gene05995 | MS.gene72786 | 0.825675 | 4.12E-54 | -1.69E-46 |
| MS.gene05996 | MS.gene72786 | 0.818761 | 1.66E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene72786 | 0.83193 | 1.26E-55 | -1.69E-46 |
| MS.gene060187 | MS.gene72786 | -0.817221 | 3.69E-52 | -1.69E-46 |
| MS.gene060485 | MS.gene72786 | 0.805697 | 1.18E-49 | -1.69E-46 |
| MS.gene060593 | MS.gene72786 | -0.808179 | 3.52E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene72786 | -0.85496 | 8.69E-62 | -1.69E-46 |
| MS.gene060703 | MS.gene72786 | 0.804689 | 1.91E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene72786 | 0.843218 | 1.60E-58 | -1.69E-46 |
| MS.gene060778 | MS.gene72786 | 0.868796 | 5.00E-66 | -1.69E-46 |
| MS.gene06077 | MS.gene72786 | 0.85201 | 6.11E-61 | -1.69E-46 |
| MS.gene060835 | MS.gene72786 | 0.807369 | 5.23E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene72786 | 0.855167 | 7.56E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72786.t1 | MTR_5g026350 | 88.133 | 573 | 20 | 3 | 1 | 525 | 1 | 573 | 0.0 | 994 |
| MS.gene72786.t1 | MTR_8g071920 | 64.348 | 575 | 151 | 6 | 1 | 524 | 42 | 613 | 0.0 | 687 |
| MS.gene72786.t1 | MTR_7g083660 | 51.845 | 569 | 210 | 9 | 1 | 517 | 1 | 557 | 4.42e-177 | 510 |
| MS.gene72786.t1 | MTR_3g466040 | 33.333 | 564 | 272 | 14 | 1 | 511 | 1 | 513 | 1.39e-73 | 243 |
| MS.gene72786.t1 | MTR_3g466110 | 31.423 | 541 | 250 | 15 | 1 | 480 | 1 | 481 | 2.78e-64 | 218 |
| MS.gene72786.t1 | MTR_4g073690 | 27.749 | 573 | 297 | 13 | 5 | 511 | 13 | 534 | 1.78e-56 | 198 |
| MS.gene72786.t1 | MTR_5g022380 | 28.049 | 574 | 306 | 15 | 5 | 521 | 11 | 534 | 3.78e-46 | 169 |
| MS.gene72786.t1 | MTR_4g073690 | 25.899 | 417 | 202 | 9 | 5 | 357 | 13 | 386 | 6.99e-33 | 130 |
| MS.gene72786.t1 | MTR_2g450710 | 26.361 | 588 | 317 | 19 | 1 | 511 | 5 | 553 | 4.80e-31 | 127 |
| MS.gene72786.t1 | MTR_4g116210 | 25.557 | 583 | 332 | 17 | 2 | 511 | 6 | 559 | 5.07e-31 | 127 |
| MS.gene72786.t1 | MTR_5g022380 | 29.002 | 431 | 254 | 13 | 96 | 521 | 41 | 424 | 1.67e-29 | 120 |
| MS.gene72786.t1 | MTR_5g090570 | 30.493 | 223 | 142 | 5 | 299 | 518 | 319 | 531 | 9.21e-22 | 99.0 |
| MS.gene72786.t1 | MTR_1g111550 | 24.429 | 569 | 342 | 18 | 7 | 517 | 25 | 563 | 4.42e-16 | 81.6 |
| MS.gene72786.t1 | MTR_7g029015 | 26.496 | 234 | 157 | 5 | 290 | 510 | 345 | 576 | 4.31e-15 | 78.6 |
| MS.gene72786.t1 | MTR_7g102880 | 28.992 | 238 | 155 | 9 | 290 | 517 | 344 | 577 | 5.25e-15 | 78.2 |
| MS.gene72786.t1 | MTR_1g111510 | 28.750 | 240 | 161 | 7 | 290 | 521 | 332 | 569 | 1.02e-14 | 77.4 |
| MS.gene72786.t1 | MTR_1g111530 | 28.512 | 242 | 159 | 8 | 290 | 521 | 328 | 565 | 2.33e-14 | 76.3 |
| MS.gene72786.t1 | MTR_1g050550 | 29.032 | 248 | 150 | 9 | 290 | 521 | 339 | 576 | 2.41e-14 | 76.3 |
| MS.gene72786.t1 | MTR_2g100400 | 25.882 | 255 | 173 | 7 | 268 | 519 | 296 | 537 | 2.50e-14 | 75.9 |
| MS.gene72786.t1 | MTR_1g059080 | 29.435 | 248 | 149 | 9 | 290 | 521 | 330 | 567 | 3.61e-14 | 75.5 |
| MS.gene72786.t1 | MTR_1g111540 | 28.512 | 242 | 159 | 8 | 290 | 521 | 332 | 569 | 1.41e-13 | 73.6 |
| MS.gene72786.t1 | MTR_3g099150 | 28.340 | 247 | 140 | 10 | 290 | 510 | 318 | 553 | 1.39e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72786.t1 | AT5G45275 | 58.087 | 575 | 176 | 6 | 1 | 520 | 1 | 565 | 0.0 | 611 |
| MS.gene72786.t1 | AT4G19450 | 56.995 | 579 | 180 | 7 | 1 | 521 | 1 | 568 | 0.0 | 601 |
| MS.gene72786.t1 | AT1G31470 | 50.088 | 571 | 197 | 9 | 1 | 519 | 37 | 571 | 7.42e-170 | 493 |
| MS.gene72786.t1 | AT3G01630 | 45.280 | 572 | 212 | 14 | 6 | 518 | 22 | 551 | 8.94e-155 | 453 |
| MS.gene72786.t1 | AT3G01630 | 45.280 | 572 | 212 | 14 | 6 | 518 | 40 | 569 | 2.19e-154 | 453 |
| MS.gene72786.t1 | AT4G19450 | 53.682 | 421 | 129 | 6 | 1 | 363 | 1 | 413 | 7.10e-141 | 412 |
| MS.gene72786.t1 | AT2G30300 | 32.072 | 555 | 270 | 15 | 5 | 511 | 2 | 497 | 8.15e-61 | 208 |
| MS.gene72786.t1 | AT4G34950 | 27.013 | 559 | 329 | 13 | 7 | 510 | 16 | 550 | 1.72e-53 | 190 |
| MS.gene72786.t1 | AT2G16660 | 27.289 | 557 | 311 | 14 | 7 | 510 | 14 | 529 | 3.79e-44 | 164 |
| MS.gene72786.t1 | AT1G80530 | 26.195 | 565 | 334 | 18 | 2 | 511 | 8 | 544 | 2.94e-30 | 124 |
| MS.gene72786.t1 | AT2G28120 | 24.028 | 566 | 356 | 16 | 7 | 521 | 17 | 559 | 1.66e-25 | 110 |
| MS.gene72786.t1 | AT2G16660 | 24.455 | 413 | 221 | 10 | 7 | 364 | 14 | 390 | 1.47e-21 | 97.1 |
| MS.gene72786.t1 | AT5G50520 | 26.087 | 414 | 254 | 14 | 112 | 519 | 171 | 538 | 1.28e-17 | 86.3 |
| MS.gene72786.t1 | AT5G50630 | 26.087 | 414 | 254 | 14 | 112 | 519 | 171 | 538 | 1.28e-17 | 86.3 |
| MS.gene72786.t1 | AT5G14120 | 29.388 | 245 | 165 | 5 | 268 | 510 | 332 | 570 | 4.06e-17 | 84.7 |
| MS.gene72786.t1 | AT1G74780 | 29.185 | 233 | 150 | 7 | 282 | 510 | 301 | 522 | 5.21e-17 | 84.3 |
| MS.gene72786.t1 | AT3G01930 | 30.942 | 223 | 150 | 4 | 290 | 510 | 242 | 462 | 7.84e-17 | 83.6 |
| MS.gene72786.t1 | AT2G39210 | 30.085 | 236 | 155 | 7 | 290 | 517 | 331 | 564 | 1.31e-16 | 83.2 |
| MS.gene72786.t1 | AT3G01930 | 30.942 | 223 | 150 | 4 | 290 | 510 | 355 | 575 | 1.53e-16 | 83.2 |
| MS.gene72786.t1 | AT1G18940 | 27.869 | 244 | 151 | 10 | 285 | 517 | 296 | 525 | 6.67e-15 | 77.8 |
| MS.gene72786.t1 | AT2G34355 | 26.271 | 236 | 162 | 5 | 284 | 517 | 145 | 370 | 1.20e-14 | 76.3 |
| MS.gene72786.t1 | AT2G34355 | 26.271 | 236 | 162 | 5 | 284 | 517 | 295 | 520 | 2.60e-14 | 75.9 |
| MS.gene72786.t1 | AT2G34350 | 26.860 | 242 | 157 | 7 | 283 | 518 | 296 | 523 | 1.74e-13 | 73.2 |
| MS.gene72786.t1 | AT2G34350 | 26.860 | 242 | 157 | 7 | 283 | 518 | 296 | 523 | 1.74e-13 | 73.2 |
Find 94 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCATCATTCTCCTTCTT+TGG | 0.213188 | 5.1:+16877801 | MS.gene72786:CDS |
| AAAGTGTTTGGTTGGTCTTC+TGG | 0.219575 | 5.1:+16874832 | MS.gene72786:CDS |
| CCCAATTGCATTCATCTTGC+TGG | 0.229813 | 5.1:+16878038 | MS.gene72786:CDS |
| ATCCCTTCTCTATGGTTTCA+TGG | 0.233016 | 5.1:+16878221 | MS.gene72786:CDS |
| GAAGAGGGACAAGGGCATTT+AGG | 0.272558 | 5.1:-16877131 | None:intergenic |
| TGGGACGGCAATGCTATTTC+TGG | 0.278696 | 5.1:+16878322 | MS.gene72786:CDS |
| CATGTTTATTGCTGCTTCAA+TGG | 0.301959 | 5.1:+16874888 | MS.gene72786:CDS |
| CCAATTGGATCCCTTCTCTA+TGG | 0.305725 | 5.1:+16878213 | MS.gene72786:CDS |
| TGGCAGGACAATCAAGAAAA+TGG | 0.311458 | 5.1:+16874668 | MS.gene72786:CDS |
| ATTATTATGTTTCCATTTCC+AGG | 0.322761 | 5.1:-16878279 | None:intergenic |
| CTTGTTTACAGCAATAATCT+TGG | 0.332047 | 5.1:+16877723 | MS.gene72786:CDS |
| GCCGTTACATCTGAGCTCTT+TGG | 0.350791 | 5.1:+16878144 | MS.gene72786:CDS |
| AAAACAATCATAAGCATGTT+TGG | 0.355071 | 5.1:-16878412 | None:intergenic |
| GGACAGATAGCTCAATCTTT+AGG | 0.355909 | 5.1:+16877744 | MS.gene72786:CDS |
| TGATACTAATAGCAACAATA+TGG | 0.363183 | 5.1:+16874692 | MS.gene72786:CDS |
| CTCATAACAAATATTCCAAT+TGG | 0.383465 | 5.1:+16878198 | MS.gene72786:CDS |
| CTGCTTGGTGAAAACGGATA+TGG | 0.383934 | 5.1:+16877543 | MS.gene72786:CDS |
| GCCAGCAAGATGAATGCAAT+TGG | 0.384601 | 5.1:-16878039 | None:intergenic |
| ATGTTTATTGCTGCTTCAAT+GGG | 0.387895 | 5.1:+16874889 | MS.gene72786:CDS |
| GCTGCTTCAATGGGTCTTGT+TGG | 0.391680 | 5.1:+16874898 | MS.gene72786:CDS |
| GCTATCTCAGCACCTGGAAA+TGG | 0.394685 | 5.1:+16878267 | MS.gene72786:CDS |
| TACTTCTGCGGAGGTACAAT+TGG | 0.409964 | 5.1:+16877699 | MS.gene72786:CDS |
| CAGCCGCGGTTCTTGTGAAA+AGG | 0.416501 | 5.1:+16877649 | MS.gene72786:CDS |
| AAGTTCTACTTTGCAAGGAC+AGG | 0.418566 | 5.1:+16877988 | MS.gene72786:CDS |
| GCTATTTCTGGACATTTGTA+TGG | 0.429375 | 5.1:+16878334 | MS.gene72786:CDS |
| GCAGGATCAATTGGAAATGC+TGG | 0.431793 | 5.1:+16877614 | MS.gene72786:CDS |
| CCAGCAAGATGAATGCAATT+GGG | 0.438820 | 5.1:-16878038 | None:intergenic |
| ATCTGATTCATTAGTGTGCA+TGG | 0.444162 | 5.1:+16878302 | MS.gene72786:CDS |
| GTGTTATATATGCTAGAGAT+TGG | 0.448496 | 5.1:+16877385 | MS.gene72786:CDS |
| TTTCTGGACATTTGTATGGT+GGG | 0.453355 | 5.1:+16878338 | MS.gene72786:CDS |
| ATAAACATGACAAGAGAGAT+TGG | 0.454947 | 5.1:-16874874 | None:intergenic |
| AATGTAGGAACTGCACTAAT+CGG | 0.461447 | 5.1:+16878087 | MS.gene72786:CDS |
| CAAGGCCTGCTTGGTGAAAA+CGG | 0.464458 | 5.1:+16877537 | MS.gene72786:CDS |
| TGGGGATGTATATCTGTCAT+AGG | 0.465322 | 5.1:+16878357 | MS.gene72786:CDS |
| ACTTACTTTCGAATGTAGTC+AGG | 0.465887 | 5.1:-16877843 | None:intergenic |
| CAGTCGGTTGCGCTGAAATA+CGG | 0.476009 | 5.1:-16878443 | None:intergenic |
| AGATAGAGTTGATCTGATGA+AGG | 0.476307 | 5.1:-16877105 | None:intergenic |
| ACATCAAGGCTTTACTTTGG+TGG | 0.477843 | 5.1:+16877324 | MS.gene72786:CDS |
| AAAGGCGGTTGGCGAAGAAT+CGG | 0.485100 | 5.1:-16877177 | None:intergenic |
| GGAGAATGAGTGTCTGATAA+AGG | 0.489819 | 5.1:-16877195 | None:intergenic |
| CCATAGAGAAGGGATCCAAT+TGG | 0.490493 | 5.1:-16878213 | None:intergenic |
| GCAACATCAAGGCTTTACTT+TGG | 0.496044 | 5.1:+16877321 | MS.gene72786:CDS |
| AGTGACATGGGTAAAGTGTT+TGG | 0.497761 | 5.1:+16874820 | MS.gene72786:CDS |
| TTCTGGACATTTGTATGGTG+GGG | 0.499270 | 5.1:+16878339 | MS.gene72786:CDS |
| TGAAAGCAAGCGTCCAAAGA+AGG | 0.499870 | 5.1:-16877814 | None:intergenic |
| CGCGGTTCTTGTGAAAAGGT+TGG | 0.500230 | 5.1:+16877653 | MS.gene72786:CDS |
| CTTAGCAACTGCAAGTGACA+TGG | 0.505520 | 5.1:+16874807 | MS.gene72786:CDS |
| GCACTAATCGGTCTGAGCTC+AGG | 0.513327 | 5.1:+16878099 | MS.gene72786:CDS |
| CAAAACAGCGCTCGGAGCAA+TGG | 0.514304 | 5.1:+16877507 | MS.gene72786:CDS |
| GGAGATGCTCAAGGCCTGCT+TGG | 0.515078 | 5.1:+16877528 | MS.gene72786:CDS |
| TGAGTGGCTGCAGTATCTGT+TGG | 0.525490 | 5.1:+16876953 | MS.gene72786:CDS |
| GCAGGAAGTTCTACTTTGCA+AGG | 0.530474 | 5.1:+16877983 | MS.gene72786:intron |
| TATTATATTGCATACTTCTG+CGG | 0.537599 | 5.1:+16877687 | MS.gene72786:CDS |
| GATAGAGTTGATCTGATGAA+GGG | 0.542870 | 5.1:-16877104 | None:intergenic |
| ATTTCTGGACATTTGTATGG+TGG | 0.553978 | 5.1:+16878337 | MS.gene72786:CDS |
| TTTCATATTTGCAGCTGCAG+TGG | 0.554888 | 5.1:+16878122 | MS.gene72786:CDS |
| TGATTGACACTCAAACTGTC+GGG | 0.557476 | 5.1:-16878168 | None:intergenic |
| CGAAGTGAGAAGAGGGACAA+GGG | 0.560371 | 5.1:-16877139 | None:intergenic |
| CAGGATCAATTGGAAATGCT+GGG | 0.562484 | 5.1:+16877615 | MS.gene72786:CDS |
| TCCAAAGAGCTCAGATGTAA+CGG | 0.563002 | 5.1:-16878145 | None:intergenic |
| AAGATGAATGCAATTGGGGT+TGG | 0.563489 | 5.1:-16878033 | None:intergenic |
| CTTCTGATGAAGCAACATCA+AGG | 0.571720 | 5.1:+16877310 | MS.gene72786:CDS |
| CTGCGAGCGAAGTGAGAAGA+GGG | 0.581355 | 5.1:-16877146 | None:intergenic |
| TCTGATTCATTAGTGTGCAT+GGG | 0.581551 | 5.1:+16878303 | MS.gene72786:CDS |
| CGGAGCAATGGAGATGCTCA+AGG | 0.582212 | 5.1:+16877519 | MS.gene72786:CDS |
| AGTGAGCAAGAAATTATGGC+AGG | 0.582323 | 5.1:+16874652 | None:intergenic |
| TTACGCGTCAAAACAGCGCT+CGG | 0.582461 | 5.1:+16877499 | MS.gene72786:CDS |
| GCGAAGTGAGAAGAGGGACA+AGG | 0.583886 | 5.1:-16877140 | None:intergenic |
| CAGCCATGAAACCATAGAGA+AGG | 0.585536 | 5.1:-16878224 | None:intergenic |
| CAGCAAGATGAATGCAATTG+GGG | 0.585987 | 5.1:-16878037 | None:intergenic |
| AGTTCTACTTTGCAAGGACA+GGG | 0.588322 | 5.1:+16877989 | MS.gene72786:CDS |
| ACATGCTGCTCGTCAGAACT+CGG | 0.588359 | 5.1:+16877218 | MS.gene72786:CDS |
| AGTGCTATGACACTTAATGT+AGG | 0.598250 | 5.1:+16878072 | MS.gene72786:CDS |
| TGGGGTTGGTAAAAGTGCAA+TGG | 0.599533 | 5.1:-16878019 | None:intergenic |
| GCTAATGCTATCTCAGCACC+TGG | 0.600408 | 5.1:+16878261 | MS.gene72786:CDS |
| AAGTTGATGATGCAAAGATA+AGG | 0.600414 | 5.1:-16877290 | None:intergenic |
| ATATGGATTCAAGCATTCAC+AGG | 0.605178 | 5.1:+16874709 | MS.gene72786:CDS |
| ACATGGGTAAAGTGTTTGGT+TGG | 0.605679 | 5.1:+16874824 | MS.gene72786:CDS |
| ATTCATTAGTGTGCATGGGA+CGG | 0.608695 | 5.1:+16878307 | MS.gene72786:CDS |
| GAGTTCTGACGAGCAGCATG+TGG | 0.614253 | 5.1:-16877216 | None:intergenic |
| GTGATTGACACTCAAACTGT+CGG | 0.614996 | 5.1:-16878169 | None:intergenic |
| TTAGCAACTGCAAGTGACAT+GGG | 0.619414 | 5.1:+16874808 | MS.gene72786:CDS |
| ATAACACCAGGTATACATAA+CGG | 0.620183 | 5.1:-16877369 | None:intergenic |
| GAGTCGACGTTCTATAACTG+TGG | 0.628807 | 5.1:-16877767 | None:intergenic |
| AGCCATGAAACCATAGAGAA+GGG | 0.633768 | 5.1:-16878223 | None:intergenic |
| TATATTGCATACTTCTGCGG+AGG | 0.634986 | 5.1:+16877690 | MS.gene72786:CDS |
| GCTGCGAGCGAAGTGAGAAG+AGG | 0.636097 | 5.1:-16877147 | None:intergenic |
| GAGTGTCTGATAAAGGCGGT+TGG | 0.638280 | 5.1:-16877188 | None:intergenic |
| GTCAGAAGTTAAGACACAGT+CGG | 0.643515 | 5.1:-16878459 | None:intergenic |
| TCTCTAGCATATATAACACC+AGG | 0.651742 | 5.1:-16877381 | None:intergenic |
| TCTACTTTGCAAGGACAGGG+TGG | 0.676179 | 5.1:+16877992 | MS.gene72786:CDS |
| GGGAGAAGAACATTCAGCCG+CGG | 0.691345 | 5.1:+16877635 | MS.gene72786:CDS |
| GAATGAGTGTCTGATAAAGG+CGG | 0.762249 | 5.1:-16877192 | None:intergenic |
| GAAGGCTCGGATGAACAGCG+CGG | 0.798034 | 5.1:-16877413 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTTTAATTTAT+GGG | - | chr5.1:16875296-16875315 | None:intergenic | 0.0% |
| !!! | TAAATATTTTTTTTAATTTA+TGG | - | chr5.1:16875297-16875316 | None:intergenic | 0.0% |
| !! | AGTCTTTATTAATTAATTAA+TGG | + | chr5.1:16875047-16875066 | MS.gene72786:intron | 10.0% |
| !! | ATAATAACATTAATAATATG+TGG | - | chr5.1:16876084-16876103 | None:intergenic | 10.0% |
| !!! | AAAAATAAGAGTAAAATTTT+AGG | + | chr5.1:16875926-16875945 | MS.gene72786:intron | 10.0% |
| !!! | AATGATAAAGAATATTTTAA+AGG | - | chr5.1:16875490-16875509 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATTCAGAAAAT+AGG | - | chr5.1:16875913-16875932 | None:intergenic | 10.0% |
| !! | TAAAAATTAGTAATTACGTA+GGG | + | chr5.1:16875127-16875146 | MS.gene72786:intron | 15.0% |
| !! | TTAAAAATTAGTAATTACGT+AGG | + | chr5.1:16875126-16875145 | MS.gene72786:intron | 15.0% |
| !!! | AAAAATGAACATTTTTTGAA+AGG | + | chr5.1:16875655-16875674 | MS.gene72786:intron | 15.0% |
| !!! | CGAATATATTTTCAAAAAAT+TGG | - | chr5.1:16875705-16875724 | None:intergenic | 15.0% |
| !!! | TTAAAATATTCCTTTTTTGA+TGG | + | chr5.1:16875456-16875475 | MS.gene72786:intron | 15.0% |
| !!! | TTTTTTTTTATAGGTTAAGT+TGG | - | chr5.1:16876160-16876179 | None:intergenic | 15.0% |
| !! | AAACTGAAATGAGAAATATA+GGG | - | chr5.1:16874998-16875017 | None:intergenic | 20.0% |
| !! | AATTATTAAGTAACCACTAT+TGG | + | chr5.1:16875083-16875102 | MS.gene72786:intron | 20.0% |
| !! | CATCTATGTTAGTATTTATA+TGG | - | chr5.1:16876491-16876510 | None:intergenic | 20.0% |
| !!! | CAAAAAGCTTTTAATAATAG+TGG | + | chr5.1:16875404-16875423 | MS.gene72786:intron | 20.0% |
| !!! | TTTCTTATGTTTTGAATGAA+TGG | + | chr5.1:16875883-16875902 | MS.gene72786:intron | 20.0% |
| ! | AAAACAATCATAAGCATGTT+TGG | - | chr5.1:16878415-16878434 | None:intergenic | 25.0% |
| ! | AAAAGGACCTAAAAATGAAA+AGG | - | chr5.1:16875991-16876010 | None:intergenic | 25.0% |
| ! | AAATGAGAAATATAGGGTAA+AGG | - | chr5.1:16874992-16875011 | None:intergenic | 25.0% |
| ! | ACATTAATAATATGTGGACT+TGG | - | chr5.1:16876078-16876097 | None:intergenic | 25.0% |
| ! | ATTATTATGTTTCCATTTCC+AGG | - | chr5.1:16878282-16878301 | None:intergenic | 25.0% |
| ! | CAAGTTCTTAGTTGTATTAT+AGG | + | chr5.1:16876808-16876827 | MS.gene72786:intron | 25.0% |
| ! | CTCATAACAAATATTCCAAT+TGG | + | chr5.1:16878198-16878217 | MS.gene72786:CDS | 25.0% |
| ! | CTGATATAAACGAAAAAAAC+TGG | + | chr5.1:16877884-16877903 | MS.gene72786:intron | 25.0% |
| ! | GAAACTGAAATGAGAAATAT+AGG | - | chr5.1:16874999-16875018 | None:intergenic | 25.0% |
| ! | TATTATATTGCATACTTCTG+CGG | + | chr5.1:16877687-16877706 | MS.gene72786:CDS | 25.0% |
| ! | TCGAAACATTACTATTTGAA+AGG | + | chr5.1:16876644-16876663 | MS.gene72786:intron | 25.0% |
| ! | TGATACTAATAGCAACAATA+TGG | + | chr5.1:16874692-16874711 | MS.gene72786:CDS | 25.0% |
| ! | TTCTGAATTATAGGGAAAAT+GGG | + | chr5.1:16876267-16876286 | MS.gene72786:intron | 25.0% |
| ! | TTTATCACTCGATCTTAATT+TGG | - | chr5.1:16876303-16876322 | None:intergenic | 25.0% |
| !! | GAGACTAAGAGTAAATTTTT+CGG | + | chr5.1:16877955-16877974 | MS.gene72786:intron | 25.0% |
| !! | TCTAACATTGAACATTTTAG+CGG | + | chr5.1:16877248-16877267 | MS.gene72786:CDS | 25.0% |
| !!! | TGAATTGTGACAAGTTTTTT+GGG | + | chr5.1:16877592-16877611 | MS.gene72786:CDS | 25.0% |
| AAAATAGCATACACCAATAG+TGG | - | chr5.1:16875099-16875118 | None:intergenic | 30.0% | |
| AAGAATATACTAGTACTAGG+AGG | + | chr5.1:16875725-16875744 | MS.gene72786:intron | 30.0% | |
| AAGTGGAAAAGAGAAGATTA+AGG | + | chr5.1:16875627-16875646 | MS.gene72786:intron | 30.0% | |
| AGGAACAATGCACTTATAAT+GGG | + | chr5.1:16875745-16875764 | MS.gene72786:intron | 30.0% | |
| ATAAACATGACAAGAGAGAT+TGG | - | chr5.1:16874877-16874896 | None:intergenic | 30.0% | |
| ATAACACCAGGTATACATAA+CGG | - | chr5.1:16877372-16877391 | None:intergenic | 30.0% | |
| CTTCTGAATTATAGGGAAAA+TGG | + | chr5.1:16876266-16876285 | MS.gene72786:intron | 30.0% | |
| CTTGTTTACAGCAATAATCT+TGG | + | chr5.1:16877723-16877742 | MS.gene72786:CDS | 30.0% | |
| GAAATATAGGGTAAAGGAAA+AGG | - | chr5.1:16874986-16875005 | None:intergenic | 30.0% | |
| GGTTGCATATATATATTGGA+GGG | + | chr5.1:16875148-16875167 | MS.gene72786:intron | 30.0% | |
| GTAGGGTTGCATATATATAT+TGG | + | chr5.1:16875144-16875163 | MS.gene72786:intron | 30.0% | |
| GTATGAATGGTTGTTATAGT+GGG | + | chr5.1:16875207-16875226 | MS.gene72786:intron | 30.0% | |
| GTGTTATATATGCTAGAGAT+TGG | + | chr5.1:16877385-16877404 | MS.gene72786:CDS | 30.0% | |
| GTTGCATATATATATTGGAG+GGG | + | chr5.1:16875149-16875168 | MS.gene72786:intron | 30.0% | |
| TATGAATGGTTGTTATAGTG+GGG | + | chr5.1:16875208-16875227 | MS.gene72786:intron | 30.0% | |
| TATTCATCATTCTCCTTCTT+TGG | + | chr5.1:16877801-16877820 | MS.gene72786:CDS | 30.0% | |
| TCACAAGCTTCTGAATTATA+GGG | + | chr5.1:16876259-16876278 | MS.gene72786:intron | 30.0% | |
| TCGAAGAATATACTAGTACT+AGG | + | chr5.1:16875722-16875741 | MS.gene72786:intron | 30.0% | |
| TTCACAAGCTTCTGAATTAT+AGG | + | chr5.1:16876258-16876277 | MS.gene72786:intron | 30.0% | |
| ! | ATAGATGTCCAAGTTTTCAA+GGG | + | chr5.1:16876504-16876523 | MS.gene72786:intron | 30.0% |
| ! | ATGTTTATTGCTGCTTCAAT+GGG | + | chr5.1:16874889-16874908 | MS.gene72786:CDS | 30.0% |
| ! | GGAAACTTTTCCATCAAAAA+AGG | - | chr5.1:16875469-16875488 | None:intergenic | 30.0% |
| ! | TTGTGAAAAGGTTGGATTTT+TGG | + | chr5.1:16877661-16877680 | MS.gene72786:CDS | 30.0% |
| !! | AAGTTGATGATGCAAAGATA+AGG | - | chr5.1:16877293-16877312 | None:intergenic | 30.0% |
| !! | ACTTTGAGTAGTTTTTGAAG+TGG | + | chr5.1:16875610-16875629 | MS.gene72786:intron | 30.0% |
| !! | CTTTGACTTTTGTATGTTTC+AGG | + | chr5.1:16876912-16876931 | MS.gene72786:intron | 30.0% |
| !! | GTAAATTTTTCGGTATTTGC+AGG | + | chr5.1:16877965-16877984 | MS.gene72786:intron | 30.0% |
| !!! | GTGAATTGTGACAAGTTTTT+TGG | + | chr5.1:16877591-16877610 | MS.gene72786:CDS | 30.0% |
| AATGCTAAGGATCTGTTAAC+TGG | - | chr5.1:16877018-16877037 | None:intergenic | 35.0% | |
| AATGTAGGAACTGCACTAAT+CGG | + | chr5.1:16878087-16878106 | MS.gene72786:CDS | 35.0% | |
| ACTATTTGAAAGGACTCTAG+TGG | + | chr5.1:16876654-16876673 | MS.gene72786:intron | 35.0% | |
| ACTTACTTTCGAATGTAGTC+AGG | - | chr5.1:16877846-16877865 | None:intergenic | 35.0% | |
| AGTGCTATGACACTTAATGT+AGG | + | chr5.1:16878072-16878091 | MS.gene72786:CDS | 35.0% | |
| AGTTAACAGATCCTTAGCAT+TGG | + | chr5.1:16877017-16877036 | MS.gene72786:intron | 35.0% | |
| ATATGGATTCAAGCATTCAC+AGG | + | chr5.1:16874709-16874728 | MS.gene72786:CDS | 35.0% | |
| ATCTGATTCATTAGTGTGCA+TGG | + | chr5.1:16878302-16878321 | MS.gene72786:CDS | 35.0% | |
| ATGCTAAGGATCTGTTAACT+GGG | - | chr5.1:16877017-16877036 | None:intergenic | 35.0% | |
| GAGGAACAATGCACTTATAA+TGG | + | chr5.1:16875744-16875763 | MS.gene72786:intron | 35.0% | |
| GGGTTGCATATATATATTGG+AGG | + | chr5.1:16875147-16875166 | MS.gene72786:intron | 35.0% | |
| GGTATGAATGGTTGTTATAG+TGG | + | chr5.1:16875206-16875225 | MS.gene72786:intron | 35.0% | |
| TAGTACAAAGTAGGTTCAAG+AGG | + | chr5.1:16876680-16876699 | MS.gene72786:intron | 35.0% | |
| TAGTGGAGATAGTACAAAGT+AGG | + | chr5.1:16876671-16876690 | MS.gene72786:intron | 35.0% | |
| TATAGGGTAAAGGAAAAGGA+AGG | - | chr5.1:16874982-16875001 | None:intergenic | 35.0% | |
| TCTCTAGCATATATAACACC+AGG | - | chr5.1:16877384-16877403 | None:intergenic | 35.0% | |
| TCTGATTCATTAGTGTGCAT+GGG | + | chr5.1:16878303-16878322 | MS.gene72786:CDS | 35.0% | |
| TTGAACGTACACAGTTGAAA+AGG | - | chr5.1:16876008-16876027 | None:intergenic | 35.0% | |
| TTTCTGGACATTTGTATGGT+GGG | + | chr5.1:16878338-16878357 | MS.gene72786:CDS | 35.0% | |
| ! | AGATAGAGTTGATCTGATGA+AGG | - | chr5.1:16877108-16877127 | None:intergenic | 35.0% |
| ! | ATTTCTGGACATTTGTATGG+TGG | + | chr5.1:16878337-16878356 | MS.gene72786:CDS | 35.0% |
| ! | ATTTTGCCGTTATGTATACC+TGG | + | chr5.1:16877363-16877382 | MS.gene72786:CDS | 35.0% |
| ! | CATAGATGTCCAAGTTTTCA+AGG | + | chr5.1:16876503-16876522 | MS.gene72786:intron | 35.0% |
| ! | CATGTTTATTGCTGCTTCAA+TGG | + | chr5.1:16874888-16874907 | MS.gene72786:CDS | 35.0% |
| ! | GATAGAGTTGATCTGATGAA+GGG | - | chr5.1:16877107-16877126 | None:intergenic | 35.0% |
| !! | AACATTTTAGCGGTTTTCAC+AGG | + | chr5.1:16877258-16877277 | MS.gene72786:CDS | 35.0% |
| !! | AAGGAAGGTACCAGAAAATA+AGG | - | chr5.1:16874967-16874986 | None:intergenic | 35.0% |
| !! | CACACGTCCTTTTCATTTTT+AGG | + | chr5.1:16875981-16876000 | MS.gene72786:intron | 35.0% |
| !! | GCTATTTCTGGACATTTGTA+TGG | + | chr5.1:16878334-16878353 | MS.gene72786:CDS | 35.0% |
| !! | TAGATGTCCAAGTTTTCAAG+GGG | + | chr5.1:16876505-16876524 | MS.gene72786:intron | 35.0% |
| !! | TATAATGGGTGTTAGATGTG+TGG | + | chr5.1:16875759-16875778 | MS.gene72786:intron | 35.0% |
| !! | TGAGTTCTAGAATCAGCATT+TGG | - | chr5.1:16876054-16876073 | None:intergenic | 35.0% |
| !!! | AAGGACGTGTGAGATTTTTT+AGG | - | chr5.1:16875972-16875991 | None:intergenic | 35.0% |
| !!! | CATCACTTTGCCTTATTTTC+TGG | + | chr5.1:16874954-16874973 | MS.gene72786:intron | 35.0% |
| !!! | TTTTTTCTGTGTCTGTTGAG+TGG | + | chr5.1:16876937-16876956 | MS.gene72786:CDS | 35.0% |
| AAAACTCAGTATCCGATCCA+AGG | - | chr5.1:16876563-16876582 | None:intergenic | 40.0% | |
| AAGATGAATGCAATTGGGGT+TGG | - | chr5.1:16878036-16878055 | None:intergenic | 40.0% | |
| AAGTTCTACTTTGCAAGGAC+AGG | + | chr5.1:16877988-16878007 | MS.gene72786:CDS | 40.0% | |
| ACATCAAGGCTTTACTTTGG+TGG | + | chr5.1:16877324-16877343 | MS.gene72786:CDS | 40.0% | |
| AGCCATGAAACCATAGAGAA+GGG | - | chr5.1:16878226-16878245 | None:intergenic | 40.0% | |
| AGTTCTACTTTGCAAGGACA+GGG | + | chr5.1:16877989-16878008 | MS.gene72786:CDS | 40.0% | |
| ATCCCTTCTCTATGGTTTCA+TGG | + | chr5.1:16878221-16878240 | MS.gene72786:CDS | 40.0% | |
| ATTCATTAGTGTGCATGGGA+CGG | + | chr5.1:16878307-16878326 | MS.gene72786:CDS | 40.0% | |
| CAGCAAGATGAATGCAATTG+GGG | - | chr5.1:16878040-16878059 | None:intergenic | 40.0% | |
| CAGGATCAATTGGAAATGCT+GGG | + | chr5.1:16877615-16877634 | MS.gene72786:CDS | 40.0% | |
| CAGTTGTTCTCTTGACTGAT+GGG | + | chr5.1:16875176-16875195 | MS.gene72786:intron | 40.0% | |
| CATAGAGTTGCAACATCTAG+AGG | + | chr5.1:16876859-16876878 | MS.gene72786:intron | 40.0% | |
| CCAGCAAGATGAATGCAATT+GGG | - | chr5.1:16878041-16878060 | None:intergenic | 40.0% | |
| CTTCTGATGAAGCAACATCA+AGG | + | chr5.1:16877310-16877329 | MS.gene72786:CDS | 40.0% | |
| GAATGAGTGTCTGATAAAGG+CGG | - | chr5.1:16877195-16877214 | None:intergenic | 40.0% | |
| GCAACATCAAGGCTTTACTT+TGG | + | chr5.1:16877321-16877340 | MS.gene72786:CDS | 40.0% | |
| GGACAGATAGCTCAATCTTT+AGG | + | chr5.1:16877744-16877763 | MS.gene72786:CDS | 40.0% | |
| GGAGAAGCGGATATCTTAAA+TGG | + | chr5.1:16876701-16876720 | MS.gene72786:intron | 40.0% | |
| GGAGAATGAGTGTCTGATAA+AGG | - | chr5.1:16877198-16877217 | None:intergenic | 40.0% | |
| GTGATTGACACTCAAACTGT+CGG | - | chr5.1:16878172-16878191 | None:intergenic | 40.0% | |
| TATATTGCATACTTCTGCGG+AGG | + | chr5.1:16877690-16877709 | MS.gene72786:CDS | 40.0% | |
| TCAGTTGTTCTCTTGACTGA+TGG | + | chr5.1:16875175-16875194 | MS.gene72786:intron | 40.0% | |
| TCCAAAGAGCTCAGATGTAA+CGG | - | chr5.1:16878148-16878167 | None:intergenic | 40.0% | |
| TGATTGACACTCAAACTGTC+GGG | - | chr5.1:16878171-16878190 | None:intergenic | 40.0% | |
| TGGCAGGACAATCAAGAAAA+TGG | + | chr5.1:16874668-16874687 | MS.gene72786:CDS | 40.0% | |
| TGGGGATGTATATCTGTCAT+AGG | + | chr5.1:16878357-16878376 | MS.gene72786:CDS | 40.0% | |
| TTAGCAACTGCAAGTGACAT+GGG | + | chr5.1:16874808-16874827 | MS.gene72786:CDS | 40.0% | |
| TTCAACTGTGTACGTTCAAC+TGG | + | chr5.1:16876009-16876028 | MS.gene72786:intron | 40.0% | |
| TTCTGGACATTTGTATGGTG+GGG | + | chr5.1:16878339-16878358 | MS.gene72786:CDS | 40.0% | |
| TTTCATATTTGCAGCTGCAG+TGG | + | chr5.1:16878122-16878141 | MS.gene72786:CDS | 40.0% | |
| ! | ACATGGGTAAAGTGTTTGGT+TGG | + | chr5.1:16874824-16874843 | MS.gene72786:CDS | 40.0% |
| ! | AGTGACATGGGTAAAGTGTT+TGG | + | chr5.1:16874820-16874839 | MS.gene72786:CDS | 40.0% |
| !! | AAAGTGTTTGGTTGGTCTTC+TGG | + | chr5.1:16874832-16874851 | MS.gene72786:CDS | 40.0% |
| !! | AGATGTCCAAGTTTTCAAGG+GGG | + | chr5.1:16876506-16876525 | MS.gene72786:intron | 40.0% |
| !! | GTTAAGTTGGTTGAGTTCTG+TGG | - | chr5.1:16876147-16876166 | None:intergenic | 40.0% |
| !! | TCAATGGGTCTTGTTGGTTA+TGG | + | chr5.1:16874904-16874923 | MS.gene72786:intron | 40.0% |
| !!! | GACGTGTGAGATTTTTTAGG+AGG | - | chr5.1:16875969-16875988 | None:intergenic | 40.0% |
| !!! | GTTTTTTGGGCAGGATCAAT+TGG | + | chr5.1:16877605-16877624 | MS.gene72786:CDS | 40.0% |
| !!! | TTGTGACAAGTTTTTTGGGC+AGG | + | chr5.1:16877596-16877615 | MS.gene72786:CDS | 40.0% |
| AGTAGGTTCAAGAGGAGAAG+CGG | + | chr5.1:16876688-16876707 | MS.gene72786:intron | 45.0% | |
| ATCGTTGCACAGCAAATAGC+TGG | - | chr5.1:16875788-16875807 | None:intergenic | 45.0% | |
| ATGGGTGGAGATGGTATGAA+TGG | + | chr5.1:16875194-16875213 | MS.gene72786:intron | 45.0% | |
| ATTGGTCCCCTCGAATTAGT+CGG | + | chr5.1:16876536-16876555 | MS.gene72786:intron | 45.0% | |
| CAGCCATGAAACCATAGAGA+AGG | - | chr5.1:16878227-16878246 | None:intergenic | 45.0% | |
| CCAATTGGATCCCTTCTCTA+TGG | + | chr5.1:16878213-16878232 | MS.gene72786:CDS | 45.0% | |
| CCATAGAGAAGGGATCCAAT+TGG | - | chr5.1:16878216-16878235 | None:intergenic | 45.0% | |
| CCCAATTGCATTCATCTTGC+TGG | + | chr5.1:16878038-16878057 | MS.gene72786:CDS | 45.0% | |
| CTTAGCAACTGCAAGTGACA+TGG | + | chr5.1:16874807-16874826 | MS.gene72786:CDS | 45.0% | |
| GAATTAGTCGGTCCTTGGAT+CGG | + | chr5.1:16876548-16876567 | MS.gene72786:intron | 45.0% | |
| GAGTCGACGTTCTATAACTG+TGG | - | chr5.1:16877770-16877789 | None:intergenic | 45.0% | |
| GCACTCACTGTGAGTTTCAA+TGG | + | chr5.1:16877039-16877058 | MS.gene72786:intron | 45.0% | |
| GCAGGAAGTTCTACTTTGCA+AGG | + | chr5.1:16877983-16878002 | MS.gene72786:intron | 45.0% | |
| GCAGGATCAATTGGAAATGC+TGG | + | chr5.1:16877614-16877633 | MS.gene72786:CDS | 45.0% | |
| GCCAGCAAGATGAATGCAAT+TGG | - | chr5.1:16878042-16878061 | None:intergenic | 45.0% | |
| TGAAAGCAAGCGTCCAAAGA+AGG | - | chr5.1:16877817-16877836 | None:intergenic | 45.0% | |
| TTGTTCTCTTGACTGATGGG+TGG | + | chr5.1:16875179-16875198 | MS.gene72786:intron | 45.0% | |
| ! | AGAATCAGCATTTGGAGCCT+GGG | - | chr5.1:16876046-16876065 | None:intergenic | 45.0% |
| ! | ATTTGGAGCCTGGGAGTTAT+TGG | - | chr5.1:16876037-16876056 | None:intergenic | 45.0% |
| ! | CAACCTTTTCACAAGAACCG+CGG | - | chr5.1:16877655-16877674 | None:intergenic | 45.0% |
| ! | CATATCCGTTTTCACCAAGC+AGG | - | chr5.1:16877545-16877564 | None:intergenic | 45.0% |
| ! | CTGCTTGGTGAAAACGGATA+TGG | + | chr5.1:16877543-16877562 | MS.gene72786:CDS | 45.0% |
| ! | TACTTCTGCGGAGGTACAAT+TGG | + | chr5.1:16877699-16877718 | MS.gene72786:CDS | 45.0% |
| ! | TAGAATCAGCATTTGGAGCC+TGG | - | chr5.1:16876047-16876066 | None:intergenic | 45.0% |
| ! | TTTGGAGCCTGGGAGTTATT+GGG | - | chr5.1:16876036-16876055 | None:intergenic | 45.0% |
| !! | AGCTAGAGTTTTCGACTCGA+AGG | - | chr5.1:16877434-16877453 | None:intergenic | 45.0% |
| !! | TGGGGTTGGTAAAAGTGCAA+TGG | - | chr5.1:16878022-16878041 | None:intergenic | 45.0% |
| !!! | TTATCATTATTTTTTTTTAT+AGG | - | chr5.1:16876169-16876188 | None:intergenic | 5.0% |
| !!! | TTCATTATTTTTTTTTTATA+GGG | - | chr5.1:16876201-16876220 | None:intergenic | 5.0% |
| !!! | TTTCATTATTTTTTTTTTAT+AGG | - | chr5.1:16876202-16876221 | None:intergenic | 5.0% |
| AAAGGCGGTTGGCGAAGAAT+CGG | - | chr5.1:16877180-16877199 | None:intergenic | 50.0% | |
| AACTGGTCCCAATAACTCCC+AGG | + | chr5.1:16876026-16876045 | MS.gene72786:intron | 50.0% | |
| ACATGCTGCTCGTCAGAACT+CGG | + | chr5.1:16877218-16877237 | MS.gene72786:CDS | 50.0% | |
| CAAGGACCGACTAATTCGAG+GGG | - | chr5.1:16876545-16876564 | None:intergenic | 50.0% | |
| CACAGTGAGTGCCAATGCTA+AGG | - | chr5.1:16877031-16877050 | None:intergenic | 50.0% | |
| CAGTCGGTTGCGCTGAAATA+CGG | - | chr5.1:16878446-16878465 | None:intergenic | 50.0% | |
| CCAAGGACCGACTAATTCGA+GGG | - | chr5.1:16876546-16876565 | None:intergenic | 50.0% | |
| CGAAGTGAGAAGAGGGACAA+GGG | - | chr5.1:16877142-16877161 | None:intergenic | 50.0% | |
| CGCGGTTCTTGTGAAAAGGT+TGG | + | chr5.1:16877653-16877672 | MS.gene72786:CDS | 50.0% | |
| GAGTGTCTGATAAAGGCGGT+TGG | - | chr5.1:16877191-16877210 | None:intergenic | 50.0% | |
| GCCGTTACATCTGAGCTCTT+TGG | + | chr5.1:16878144-16878163 | MS.gene72786:CDS | 50.0% | |
| GCTAATGCTATCTCAGCACC+TGG | + | chr5.1:16878261-16878280 | MS.gene72786:CDS | 50.0% | |
| GCTATCTCAGCACCTGGAAA+TGG | + | chr5.1:16878267-16878286 | MS.gene72786:CDS | 50.0% | |
| GTTGCACAGCAAATAGCTGG+AGG | - | chr5.1:16875785-16875804 | None:intergenic | 50.0% | |
| TCCAAGGACCGACTAATTCG+AGG | - | chr5.1:16876547-16876566 | None:intergenic | 50.0% | |
| TCTACTTTGCAAGGACAGGG+TGG | + | chr5.1:16877992-16878011 | MS.gene72786:CDS | 50.0% | |
| TGAGTGGCTGCAGTATCTGT+TGG | + | chr5.1:16876953-16876972 | MS.gene72786:CDS | 50.0% | |
| TGGTTGAGTTCTGTGGACGT+TGG | - | chr5.1:16876140-16876159 | None:intergenic | 50.0% | |
| TTACGCGTCAAAACAGCGCT+CGG | + | chr5.1:16877499-16877518 | MS.gene72786:CDS | 50.0% | |
| ! | CAAGGCCTGCTTGGTGAAAA+CGG | + | chr5.1:16877537-16877556 | MS.gene72786:CDS | 50.0% |
| ! | GCTGCTTCAATGGGTCTTGT+TGG | + | chr5.1:16874898-16874917 | MS.gene72786:CDS | 50.0% |
| ! | TCTTGACTGATGGGTGGAGA+TGG | + | chr5.1:16875185-16875204 | MS.gene72786:intron | 50.0% |
| !! | GAAGAGGGACAAGGGCATTT+AGG | - | chr5.1:16877134-16877153 | None:intergenic | 50.0% |
| !! | GAGTTTTCGACTCGAAGGCT+CGG | - | chr5.1:16877429-16877448 | None:intergenic | 50.0% |
| !! | TGGGACGGCAATGCTATTTC+TGG | + | chr5.1:16878322-16878341 | MS.gene72786:CDS | 50.0% |
| !! | TGTCCAAGTTTTCAAGGGGG+CGG | + | chr5.1:16876509-16876528 | MS.gene72786:intron | 50.0% |
| CAAAACAGCGCTCGGAGCAA+TGG | + | chr5.1:16877507-16877526 | MS.gene72786:CDS | 55.0% | |
| CAGCCGCGGTTCTTGTGAAA+AGG | + | chr5.1:16877649-16877668 | MS.gene72786:CDS | 55.0% | |
| CCCTCGAATTAGTCGGTCCT+TGG | + | chr5.1:16876543-16876562 | MS.gene72786:intron | 55.0% | |
| CGGAGCAATGGAGATGCTCA+AGG | + | chr5.1:16877519-16877538 | MS.gene72786:CDS | 55.0% | |
| CTGCGAGCGAAGTGAGAAGA+GGG | - | chr5.1:16877149-16877168 | None:intergenic | 55.0% | |
| GCACTAATCGGTCTGAGCTC+AGG | + | chr5.1:16878099-16878118 | MS.gene72786:CDS | 55.0% | |
| GCGAAGTGAGAAGAGGGACA+AGG | - | chr5.1:16877143-16877162 | None:intergenic | 55.0% | |
| GGGAGAAGAACATTCAGCCG+CGG | + | chr5.1:16877635-16877654 | MS.gene72786:CDS | 55.0% | |
| ! | GAGTTCTGACGAGCAGCATG+TGG | - | chr5.1:16877219-16877238 | None:intergenic | 55.0% |
| !! | CAAGTTTTCAAGGGGGCGGT+GGG | + | chr5.1:16876513-16876532 | MS.gene72786:intron | 55.0% |
| !!! | GAGCGCTGTTTTGACGCGTA+AGG | - | chr5.1:16877500-16877519 | None:intergenic | 55.0% |
| CCACCGCCCCCTTGAAAACT+TGG | - | chr5.1:16876515-16876534 | None:intergenic | 60.0% | |
| GAAGGCTCGGATGAACAGCG+CGG | - | chr5.1:16877416-16877435 | None:intergenic | 60.0% | |
| GCTGCGAGCGAAGTGAGAAG+AGG | - | chr5.1:16877150-16877169 | None:intergenic | 60.0% | |
| GGAGATGCTCAAGGCCTGCT+TGG | + | chr5.1:16877528-16877547 | MS.gene72786:CDS | 60.0% | |
| TTTCAAGGGGGCGGTGGGAT+TGG | + | chr5.1:16876518-16876537 | MS.gene72786:intron | 60.0% | |
| !! | CCAAGTTTTCAAGGGGGCGG+TGG | + | chr5.1:16876512-16876531 | MS.gene72786:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 16874667 | 16878473 | 16874667 | ID=MS.gene72786 |
| chr5.1 | mRNA | 16874667 | 16878473 | 16874667 | ID=MS.gene72786.t1;Parent=MS.gene72786 |
| chr5.1 | exon | 16874667 | 16874919 | 16874667 | ID=MS.gene72786.t1.exon1;Parent=MS.gene72786.t1 |
| chr5.1 | CDS | 16874667 | 16874919 | 16874667 | ID=cds.MS.gene72786.t1;Parent=MS.gene72786.t1 |
| chr5.1 | exon | 16876934 | 16876984 | 16876934 | ID=MS.gene72786.t1.exon2;Parent=MS.gene72786.t1 |
| chr5.1 | CDS | 16876934 | 16876984 | 16876934 | ID=cds.MS.gene72786.t1;Parent=MS.gene72786.t1 |
| chr5.1 | exon | 16877073 | 16877859 | 16877073 | ID=MS.gene72786.t1.exon3;Parent=MS.gene72786.t1 |
| chr5.1 | CDS | 16877073 | 16877859 | 16877073 | ID=cds.MS.gene72786.t1;Parent=MS.gene72786.t1 |
| chr5.1 | exon | 16877987 | 16878473 | 16877987 | ID=MS.gene72786.t1.exon4;Parent=MS.gene72786.t1 |
| chr5.1 | CDS | 16877987 | 16878473 | 16877987 | ID=cds.MS.gene72786.t1;Parent=MS.gene72786.t1 |
| Gene Sequence |
| Protein sequence |
