Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90870.t1 | XP_013470415.1 | 75.1 | 342 | 32 | 4 | 1 | 295 | 1 | 336 | 1.30E-129 | 472.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90870.t1 | Q9SKB6 | 59.1 | 235 | 56 | 2 | 93 | 287 | 109 | 343 | 5.7e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90870.t1 | A0A072VSR3 | 75.1 | 342 | 32 | 4 | 1 | 295 | 1 | 336 | 9.5e-130 | 472.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene90870 | 0.812143 | 4.92E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene90870 | 0.815706 | 8.06E-52 | -1.69E-46 |
| MS.gene049346 | MS.gene90870 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene90870 | 0.862683 | 4.26E-64 | -1.69E-46 |
| MS.gene049356 | MS.gene90870 | 0.818658 | 1.75E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene90870 | 0.803371 | 3.60E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene90870 | 0.820522 | 6.56E-53 | -1.69E-46 |
| MS.gene049491 | MS.gene90870 | 0.801057 | 1.08E-48 | -1.69E-46 |
| MS.gene049661 | MS.gene90870 | 0.81043 | 1.16E-50 | -1.69E-46 |
| MS.gene049662 | MS.gene90870 | 0.813188 | 2.90E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene90870 | 0.843403 | 1.43E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene90870 | 0.801715 | 7.90E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene90870 | 0.812274 | 4.60E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene90870 | 0.824568 | 7.52E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene90870 | 0.914082 | 2.91E-84 | -1.69E-46 |
| MS.gene050397 | MS.gene90870 | 0.806371 | 8.50E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene90870 | 0.800585 | 1.35E-48 | -1.69E-46 |
| MS.gene050406 | MS.gene90870 | 0.809528 | 1.81E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene90870 | 0.801339 | 9.44E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene90870 | 0.822337 | 2.50E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene90870 | 0.840813 | 6.93E-58 | -1.69E-46 |
| MS.gene050625 | MS.gene90870 | 0.821682 | 3.55E-53 | -1.69E-46 |
| MS.gene050650 | MS.gene90870 | 0.801382 | 9.24E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene90870 | 0.856431 | 3.23E-62 | -1.69E-46 |
| MS.gene050812 | MS.gene90870 | 0.857976 | 1.13E-62 | -1.69E-46 |
| MS.gene05101 | MS.gene90870 | 0.839353 | 1.67E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene90870 | 0.822665 | 2.10E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene90870 | 0.817311 | 3.52E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene90870 | 0.84893 | 4.48E-60 | -1.69E-46 |
| MS.gene051525 | MS.gene90870 | 0.840089 | 1.07E-57 | -1.69E-46 |
| MS.gene051582 | MS.gene90870 | 0.859798 | 3.22E-63 | -1.69E-46 |
| MS.gene051663 | MS.gene90870 | 0.800453 | 1.43E-48 | -1.69E-46 |
| MS.gene051666 | MS.gene90870 | 0.810989 | 8.76E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene90870 | 0.854988 | 8.53E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene90870 | -0.831608 | 1.52E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene90870 | 0.801499 | 8.75E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene90870 | 0.864712 | 9.98E-65 | -1.69E-46 |
| MS.gene052178 | MS.gene90870 | 0.824558 | 7.56E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene90870 | 0.871708 | 5.56E-67 | -1.69E-46 |
| MS.gene052253 | MS.gene90870 | 0.898661 | 4.26E-77 | -1.69E-46 |
| MS.gene052310 | MS.gene90870 | 0.858536 | 7.70E-63 | -1.69E-46 |
| MS.gene052322 | MS.gene90870 | 0.845934 | 2.98E-59 | -1.69E-46 |
| MS.gene052326 | MS.gene90870 | 0.818734 | 1.68E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene90870 | 0.881379 | 2.52E-70 | -1.69E-46 |
| MS.gene052421 | MS.gene90870 | 0.837701 | 4.45E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene90870 | 0.827059 | 1.93E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene90870 | 0.873743 | 1.16E-67 | -1.69E-46 |
| MS.gene053103 | MS.gene90870 | 0.81022 | 1.28E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene90870 | 0.815532 | 8.81E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene90870 | 0.800416 | 1.46E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene90870 | 0.84317 | 1.65E-58 | -1.69E-46 |
| MS.gene053836 | MS.gene90870 | 0.854922 | 8.91E-62 | -1.69E-46 |
| MS.gene053928 | MS.gene90870 | 0.847096 | 1.44E-59 | -1.69E-46 |
| MS.gene054010 | MS.gene90870 | 0.824714 | 6.95E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene90870 | 0.836018 | 1.20E-56 | -1.69E-46 |
| MS.gene054012 | MS.gene90870 | 0.833214 | 6.07E-56 | -1.69E-46 |
| MS.gene054013 | MS.gene90870 | 0.824842 | 6.48E-54 | -1.69E-46 |
| MS.gene054123 | MS.gene90870 | 0.861086 | 1.31E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene90870 | 0.820236 | 7.63E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene90870 | 0.803334 | 3.66E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene90870 | 0.807844 | 4.14E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene90870 | 0.828272 | 9.86E-55 | -1.69E-46 |
| MS.gene054719 | MS.gene90870 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene90870 | 0.810231 | 1.28E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene90870 | 0.805274 | 1.44E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene90870 | 0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene90870 | 0.857478 | 1.59E-62 | -1.69E-46 |
| MS.gene055277 | MS.gene90870 | 0.827506 | 1.51E-54 | -1.69E-46 |
| MS.gene055390 | MS.gene90870 | 0.83679 | 7.61E-57 | -1.69E-46 |
| MS.gene055412 | MS.gene90870 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene90870 | 0.876814 | 1.04E-68 | -1.69E-46 |
| MS.gene055428 | MS.gene90870 | 0.855405 | 6.45E-62 | -1.69E-46 |
| MS.gene05553 | MS.gene90870 | 0.826881 | 2.13E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene90870 | 0.818764 | 1.65E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene90870 | 0.827015 | 1.98E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene90870 | 0.840734 | 7.27E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene90870 | 0.812563 | 3.98E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene90870 | 0.804487 | 2.11E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene90870 | 0.826238 | 3.03E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene90870 | 0.802062 | 6.70E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene90870 | 0.81303 | 3.15E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene90870 | -0.82444 | 8.06E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene90870 | 0.810478 | 1.13E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene90870 | 0.816638 | 4.99E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene90870 | 0.828163 | 1.05E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene90870 | 0.833799 | 4.33E-56 | -1.69E-46 |
| MS.gene057123 | MS.gene90870 | 0.802238 | 6.17E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene90870 | 0.818782 | 1.64E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene90870 | 0.814154 | 1.78E-51 | -1.69E-46 |
| MS.gene057245 | MS.gene90870 | 0.826118 | 3.23E-54 | -1.69E-46 |
| MS.gene05733 | MS.gene90870 | 0.816938 | 4.27E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene90870 | 0.830195 | 3.37E-55 | -1.69E-46 |
| MS.gene057448 | MS.gene90870 | 0.817571 | 3.08E-52 | -1.69E-46 |
| MS.gene057449 | MS.gene90870 | 0.822711 | 2.05E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene90870 | 0.827873 | 1.23E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene90870 | 0.807511 | 4.88E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene90870 | 0.832634 | 8.45E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene90870 | 0.839584 | 1.45E-57 | -1.69E-46 |
| MS.gene058002 | MS.gene90870 | 0.871215 | 8.10E-67 | -1.69E-46 |
| MS.gene058007 | MS.gene90870 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene90870 | 0.882352 | 1.12E-70 | -1.69E-46 |
| MS.gene058142 | MS.gene90870 | 0.854522 | 1.16E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene90870 | 0.802056 | 6.72E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene90870 | 0.855315 | 6.85E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene90870 | 0.859205 | 4.86E-63 | -1.69E-46 |
| MS.gene058365 | MS.gene90870 | 0.818237 | 2.18E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene90870 | 0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene90870 | 0.839534 | 1.50E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene90870 | 0.82293 | 1.82E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene90870 | 0.860067 | 2.67E-63 | -1.69E-46 |
| MS.gene058700 | MS.gene90870 | 0.838081 | 3.55E-57 | -1.69E-46 |
| MS.gene058787 | MS.gene90870 | 0.802294 | 6.01E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene90870 | 0.83305 | 6.66E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene90870 | 0.829798 | 4.21E-55 | -1.69E-46 |
| MS.gene058993 | MS.gene90870 | 0.834208 | 3.42E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene90870 | 0.878258 | 3.25E-69 | -1.69E-46 |
| MS.gene059141 | MS.gene90870 | 0.837127 | 6.24E-57 | -1.69E-46 |
| MS.gene059247 | MS.gene90870 | 0.812855 | 3.44E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene90870 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene90870 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene90870 | 0.860574 | 1.88E-63 | -1.69E-46 |
| MS.gene059518 | MS.gene90870 | 0.855197 | 7.41E-62 | -1.69E-46 |
| MS.gene059536 | MS.gene90870 | 0.803689 | 3.09E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene90870 | 0.868397 | 6.73E-66 | -1.69E-46 |
| MS.gene05959 | MS.gene90870 | 0.834516 | 2.87E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene90870 | 0.853986 | 1.66E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene90870 | 0.864151 | 1.49E-64 | -1.69E-46 |
| MS.gene059692 | MS.gene90870 | 0.868341 | 7.02E-66 | -1.69E-46 |
| MS.gene059695 | MS.gene90870 | 0.870208 | 1.74E-66 | -1.69E-46 |
| MS.gene059807 | MS.gene90870 | 0.80932 | 2.01E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene90870 | 0.886325 | 3.77E-72 | -1.69E-46 |
| MS.gene059894 | MS.gene90870 | 0.829191 | 5.91E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene90870 | 0.806312 | 8.75E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene90870 | 0.804481 | 2.12E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene90870 | 0.834514 | 2.87E-56 | -1.69E-46 |
| MS.gene060407 | MS.gene90870 | 0.851136 | 1.08E-60 | -1.69E-46 |
| MS.gene060837 | MS.gene90870 | 0.821049 | 4.96E-53 | -1.69E-46 |
| MS.gene06090 | MS.gene90870 | 0.847638 | 1.02E-59 | -1.69E-46 |
| MS.gene060986 | MS.gene90870 | 0.831766 | 1.39E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene90870 | 0.859694 | 3.46E-63 | -1.69E-46 |
| MS.gene061154 | MS.gene90870 | 0.834083 | 3.68E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene90870 | 0.827527 | 1.49E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90870.t1 | MTR_1g115235 | 78.655 | 342 | 20 | 4 | 1 | 295 | 1 | 336 | 3.28e-178 | 495 |
| MS.gene90870.t1 | MTR_1g115235 | 75.333 | 300 | 21 | 4 | 1 | 253 | 1 | 294 | 9.30e-143 | 404 |
| MS.gene90870.t1 | MTR_1g115235 | 65.677 | 303 | 43 | 7 | 1 | 253 | 1 | 292 | 4.98e-114 | 331 |
| MS.gene90870.t1 | MTR_8g086060 | 35.465 | 172 | 80 | 4 | 132 | 274 | 172 | 341 | 8.72e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90870.t1 | AT2G31840 | 61.277 | 235 | 51 | 2 | 93 | 287 | 109 | 343 | 2.92e-97 | 290 |
| MS.gene90870.t1 | AT2G31840 | 61.277 | 235 | 51 | 2 | 93 | 287 | 109 | 343 | 2.92e-97 | 290 |
| MS.gene90870.t1 | AT4G28590 | 37.059 | 170 | 70 | 6 | 139 | 276 | 158 | 322 | 5.16e-27 | 108 |
Find 57 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAACCCCACTTTAC+AGG | 0.236764 | 1.4:-87341349 | MS.gene90870:CDS |
| GCAGCCTTCATGTCTTTAAT+AGG | 0.271223 | 1.4:+87340871 | None:intergenic |
| TCAGCATCTTGAGGCCAATT+AGG | 0.323877 | 1.4:+87341033 | None:intergenic |
| GAAGTTATCTTTACTAAAGC+AGG | 0.362361 | 1.4:-87338408 | MS.gene90870:CDS |
| TGATTGAACTCTTGTTAGTT+TGG | 0.367683 | 1.4:+87341317 | None:intergenic |
| TTGTCCACAATCGTTATAGA+AGG | 0.369198 | 1.4:-87340801 | MS.gene90870:intron |
| TCACTCAAATCTGATGGTTC+TGG | 0.371232 | 1.4:-87341297 | MS.gene90870:CDS |
| GACTAACATTCCAGATTTCC+AGG | 0.377669 | 1.4:-87338181 | MS.gene90870:CDS |
| GCTTTAGTAAAGATAACTTC+TGG | 0.387977 | 1.4:+87338411 | None:intergenic |
| GTTGTAAAGAGAAAATGAAT+TGG | 0.401953 | 1.4:+87341395 | None:intergenic |
| TTGTAAAGAGAAAATGAATT+GGG | 0.405487 | 1.4:+87341396 | None:intergenic |
| TTTACAACAAACTCTTCAAC+CGG | 0.424293 | 1.4:-87341380 | MS.gene90870:CDS |
| GTTAGTCAAACACGATGGTT+TGG | 0.445608 | 1.4:+87338197 | None:intergenic |
| TGGAAGAGGAGGATCCTAAT+TGG | 0.447524 | 1.4:-87341047 | MS.gene90870:CDS |
| CTTTAGTAAAGATAACTTCT+GGG | 0.455068 | 1.4:+87338412 | None:intergenic |
| TCAGAACACTGGATTGTCAA+TGG | 0.456395 | 1.4:+87338140 | None:intergenic |
| AGAAGGCTGTGCATATCATA+TGG | 0.459941 | 1.4:-87338630 | MS.gene90870:CDS |
| AGACATGAAGGCTGCTGAAT+GGG | 0.460094 | 1.4:-87340863 | MS.gene90870:CDS |
| TCTTCAAGAGACATAACATA+AGG | 0.460526 | 1.4:+87341195 | None:intergenic |
| TAAAGTGGGGTTTGAGAAAA+GGG | 0.468151 | 1.4:+87341353 | None:intergenic |
| GTAAAGTGGGGTTTGAGAAA+AGG | 0.470216 | 1.4:+87341352 | None:intergenic |
| GGTTTGAGAAAAGGGTCTTC+CGG | 0.471829 | 1.4:+87341361 | None:intergenic |
| ATTGTGGACAAGAATAATCA+AGG | 0.499873 | 1.4:+87340813 | None:intergenic |
| AAGACATGAAGGCTGCTGAA+TGG | 0.504100 | 1.4:-87340864 | MS.gene90870:CDS |
| TTACCAACTTGTTGTGGAAG+AGG | 0.507121 | 1.4:-87341061 | MS.gene90870:CDS |
| CTTCAAGAGACATAACATAA+GGG | 0.510035 | 1.4:+87341196 | None:intergenic |
| AGTTGCTGCACTTAAAGTAT+CGG | 0.515906 | 1.4:-87338439 | MS.gene90870:CDS |
| TCTACAACTTCTTGAACTTG+AGG | 0.519587 | 1.4:+87341126 | None:intergenic |
| TAATGATTACCAACTTGTTG+TGG | 0.520440 | 1.4:-87341067 | MS.gene90870:CDS |
| GAATCACTAACCTGTAAAGT+GGG | 0.521576 | 1.4:+87341339 | None:intergenic |
| AACACGATGGTTTGGCTCCA+CGG | 0.534700 | 1.4:+87338205 | None:intergenic |
| GGAATCACTAACCTGTAAAG+TGG | 0.538509 | 1.4:+87341338 | None:intergenic |
| CAAACCTTCTATAACGATTG+TGG | 0.550589 | 1.4:+87340797 | None:intergenic |
| TTTATTACTTACTCTTGGTG+AGG | 0.554532 | 1.4:+87338594 | None:intergenic |
| TCAAATCTGATGGTTCTGGT+TGG | 0.565426 | 1.4:-87341293 | MS.gene90870:CDS |
| TTATTACTTACTCTTGGTGA+GGG | 0.566848 | 1.4:+87338595 | None:intergenic |
| GTTCAATCACTCAAATCTGA+TGG | 0.569587 | 1.4:-87341303 | MS.gene90870:CDS |
| CCTCCTCTTCCACAACAAGT+TGG | 0.573358 | 1.4:+87341058 | None:intergenic |
| GGTTCTGGTTGGAAGAAAAG+AGG | 0.577172 | 1.4:-87341282 | MS.gene90870:CDS |
| GGATTGTCAATGGTAAAAGA+AGG | 0.585441 | 1.4:+87338150 | None:intergenic |
| TCGTCCTATTAAAGACATGA+AGG | 0.589532 | 1.4:-87340875 | MS.gene90870:CDS |
| CCAACTTGTTGTGGAAGAGG+AGG | 0.593627 | 1.4:-87341058 | MS.gene90870:CDS |
| AATTCGAGAAGAACTAGAGA+AGG | 0.595768 | 1.4:-87338647 | MS.gene90870:CDS |
| AAGTTATCTTTACTAAAGCA+GGG | 0.597570 | 1.4:-87338407 | MS.gene90870:CDS |
| AATTGGCCTCAAGATGCTGA+TGG | 0.603896 | 1.4:-87341030 | MS.gene90870:intron |
| CATGAAGGCTGCTGAATGGG+AGG | 0.605185 | 1.4:-87340860 | MS.gene90870:CDS |
| CTCTTGAAGAGAGACAAGAA+TGG | 0.610559 | 1.4:-87341182 | MS.gene90870:CDS |
| ATATGTTTCATTGATGACAG+TGG | 0.611526 | 1.4:+87341435 | None:intergenic |
| CCCCAACCATCAGCATCTTG+AGG | 0.632853 | 1.4:+87341024 | None:intergenic |
| TTGTGGACAAGAATAATCAA+GGG | 0.634415 | 1.4:+87340814 | None:intergenic |
| ACAGATCAATACCTTTATCA+CGG | 0.653404 | 1.4:+87338373 | None:intergenic |
| CAATTCGCAGTGCAGATGAG+TGG | 0.653894 | 1.4:-87338254 | MS.gene90870:CDS |
| CAGTGGCAAATTGAGTGCCA+TGG | 0.668004 | 1.4:+87341452 | None:intergenic |
| AATCACTAACCTGTAAAGTG+GGG | 0.668201 | 1.4:+87341340 | None:intergenic |
| TGATAGCGACGACGATGACG+AGG | 0.679731 | 1.4:-87341235 | MS.gene90870:CDS |
| GGAATGTTAGTCAAACACGA+TGG | 0.721819 | 1.4:+87338192 | None:intergenic |
| TCAAGAAGTTGTAGACACCG+AGG | 0.738091 | 1.4:-87341118 | MS.gene90870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATAAAAAAACAATAGTTT+TGG | + | chr1.4:87338867-87338886 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGATTCTTTTTTT+AGG | - | chr1.4:87340089-87340108 | MS.gene90870:intron | 15.0% |
| !! | AACTAAACTAAATCAAGAAA+AGG | + | chr1.4:87340415-87340434 | None:intergenic | 20.0% |
| !! | TACAATACAAAACAAAAAGA+AGG | - | chr1.4:87338619-87338638 | MS.gene90870:CDS | 20.0% |
| !! | TAGAATACAATGCATATATA+TGG | - | chr1.4:87340522-87340541 | MS.gene90870:intron | 20.0% |
| !! | TGTGATATAAGAAGAAAAAA+AGG | + | chr1.4:87340383-87340402 | None:intergenic | 20.0% |
| !! | TTGTAAAGAGAAAATGAATT+GGG | + | chr1.4:87338197-87338216 | None:intergenic | 20.0% |
| !!! | ACATTTTCACTTTTATTCTT+AGG | - | chr1.4:87340903-87340922 | MS.gene90870:intron | 20.0% |
| !!! | CATTGTATCTTTTTTGAAAT+GGG | - | chr1.4:87340730-87340749 | MS.gene90870:intron | 20.0% |
| !!! | CTTTTACTGAATTTTGTATT+TGG | + | chr1.4:87341245-87341264 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGATTCTTTTTCT+AGG | + | chr1.4:87340271-87340290 | None:intergenic | 20.0% |
| !!! | TCATTGTATCTTTTTTGAAA+TGG | - | chr1.4:87340729-87340748 | MS.gene90870:intron | 20.0% |
| !!! | TCTTTTCTTATATATGAAAC+CGG | - | chr1.4:87340281-87340300 | MS.gene90870:intron | 20.0% |
| ! | AACAAGCTAAGCTAAAAATA+TGG | + | chr1.4:87339986-87340005 | None:intergenic | 25.0% |
| ! | AAGTTATCTTTACTAAAGCA+GGG | - | chr1.4:87341183-87341202 | MS.gene90870:CDS | 25.0% |
| ! | AGTTATTGCAGAGTATATTT+AGG | - | chr1.4:87339310-87339329 | MS.gene90870:intron | 25.0% |
| ! | ATGACTTTATTACTTACTCT+TGG | + | chr1.4:87341004-87341023 | None:intergenic | 25.0% |
| ! | CATTGAATAATTAATGTACC+TGG | + | chr1.4:87340246-87340265 | None:intergenic | 25.0% |
| ! | CTTAGTCGATTATCAATTAA+TGG | - | chr1.4:87338928-87338947 | MS.gene90870:intron | 25.0% |
| ! | CTTTAGTAAAGATAACTTCT+GGG | + | chr1.4:87341181-87341200 | None:intergenic | 25.0% |
| ! | GTTGTAAAGAGAAAATGAAT+TGG | + | chr1.4:87338198-87338217 | None:intergenic | 25.0% |
| ! | TAAAAGTGAAAATGTTAGAC+AGG | + | chr1.4:87340898-87340917 | None:intergenic | 25.0% |
| !! | AAGATTTTATACCGTGATAA+AGG | - | chr1.4:87341206-87341225 | MS.gene90870:CDS | 25.0% |
| !! | ATGTATGATACGATTTTCAA+TGG | - | chr1.4:87340311-87340330 | MS.gene90870:intron | 25.0% |
| !! | CATTAATTGATAATCGACTA+AGG | + | chr1.4:87338930-87338949 | None:intergenic | 25.0% |
| !! | CTAAGCTAAAAATATGGTTT+TGG | + | chr1.4:87339980-87339999 | None:intergenic | 25.0% |
| !! | TATAATGATATGAAAGTGTG+TGG | - | chr1.4:87341100-87341119 | MS.gene90870:CDS | 25.0% |
| !! | TCTAACTTCAAAAGCATATT+AGG | + | chr1.4:87340833-87340852 | None:intergenic | 25.0% |
| !! | TCTTTTCTTATATATGAGAC+CGG | + | chr1.4:87340079-87340098 | None:intergenic | 25.0% |
| !! | TTATCTACCTCTATTTTACT+AGG | - | chr1.4:87339865-87339884 | MS.gene90870:intron | 25.0% |
| !!! | TTATCTTGTTTTAGTTGAAG+TGG | - | chr1.4:87338891-87338910 | MS.gene90870:intron | 25.0% |
| AAGAAAAATCAGACAGGTTA+TGG | - | chr1.4:87338433-87338452 | MS.gene90870:CDS | 30.0% | |
| AAGTCATACAATCATTCCTT+TGG | - | chr1.4:87341017-87341036 | MS.gene90870:intron | 30.0% | |
| ACAGATCAATACCTTTATCA+CGG | + | chr1.4:87341220-87341239 | None:intergenic | 30.0% | |
| ATGGATTTCTATCATGATTC+AGG | - | chr1.4:87340541-87340560 | MS.gene90870:intron | 30.0% | |
| ATTGTGGACAAGAATAATCA+AGG | + | chr1.4:87338780-87338799 | None:intergenic | 30.0% | |
| CTGAAAACCATAGTTCTTTA+AGG | + | chr1.4:87339471-87339490 | None:intergenic | 30.0% | |
| CTTCAAGAGACATAACATAA+GGG | + | chr1.4:87338397-87338416 | None:intergenic | 30.0% | |
| GAAGTTATCTTTACTAAAGC+AGG | - | chr1.4:87341182-87341201 | MS.gene90870:CDS | 30.0% | |
| GATAAAATAGCTGAAACCAA+AGG | + | chr1.4:87341036-87341055 | None:intergenic | 30.0% | |
| GATGGAGACGAATAAATAAA+TGG | + | chr1.4:87341281-87341300 | None:intergenic | 30.0% | |
| GCTTTAGTAAAGATAACTTC+TGG | + | chr1.4:87341182-87341201 | None:intergenic | 30.0% | |
| GTACTAGCTGTCATATAATT+AGG | - | chr1.4:87339270-87339289 | MS.gene90870:intron | 30.0% | |
| TCAAGTCATCAACATAAACT+AGG | + | chr1.4:87339554-87339573 | None:intergenic | 30.0% | |
| TCTTCAAGAGACATAACATA+AGG | + | chr1.4:87338398-87338417 | None:intergenic | 30.0% | |
| TGATTGAACTCTTGTTAGTT+TGG | + | chr1.4:87338276-87338295 | None:intergenic | 30.0% | |
| TTATTACTTACTCTTGGTGA+GGG | + | chr1.4:87340998-87341017 | None:intergenic | 30.0% | |
| TTCCACCTGTTTATATACAT+GGG | - | chr1.4:87339141-87339160 | MS.gene90870:intron | 30.0% | |
| TTCTTATATATGAAACCGGA+GGG | - | chr1.4:87340285-87340304 | MS.gene90870:intron | 30.0% | |
| TTGTGGACAAGAATAATCAA+GGG | + | chr1.4:87338779-87338798 | None:intergenic | 30.0% | |
| TTTACAACAAACTCTTCAAC+CGG | - | chr1.4:87338210-87338229 | MS.gene90870:CDS | 30.0% | |
| TTTATTACTTACTCTTGGTG+AGG | + | chr1.4:87340999-87341018 | None:intergenic | 30.0% | |
| TTTCCACCTGTTTATATACA+TGG | - | chr1.4:87339140-87339159 | MS.gene90870:intron | 30.0% | |
| TTTCTTATATATGAAACCGG+AGG | - | chr1.4:87340284-87340303 | MS.gene90870:intron | 30.0% | |
| ! | AATGTTAGACAGGATTGTTT+TGG | + | chr1.4:87340888-87340907 | None:intergenic | 30.0% |
| ! | ACGATTTTCAATGGTCATTT+TGG | - | chr1.4:87340320-87340339 | MS.gene90870:intron | 30.0% |
| ! | AGCATATACCTTTTCATACA+TGG | - | chr1.4:87339404-87339423 | MS.gene90870:intron | 30.0% |
| ! | ATATGTTTCATTGATGACAG+TGG | + | chr1.4:87338158-87338177 | None:intergenic | 30.0% |
| ! | CATTTTCTTCTTCTTTTCCT+CGG | + | chr1.4:87338492-87338511 | None:intergenic | 30.0% |
| ! | TAAAAGAAGGAATGTTTTCC+TGG | + | chr1.4:87341430-87341449 | None:intergenic | 30.0% |
| ! | TTATCAATTAATGGCCGTTT+TGG | - | chr1.4:87338937-87338956 | MS.gene90870:intron | 30.0% |
| ! | TTCTGAGAGAATAAGAGATT+TGG | - | chr1.4:87340493-87340512 | MS.gene90870:intron | 30.0% |
| !! | AATTTTAGCACTCACATAAG+AGG | - | chr1.4:87339238-87339257 | MS.gene90870:intron | 30.0% |
| !! | ACATAAGGGTCATTTTCTTT+CGG | + | chr1.4:87338383-87338402 | None:intergenic | 30.0% |
| !! | CAGCTATTTTATCACAAAGT+TGG | - | chr1.4:87341043-87341062 | MS.gene90870:CDS | 30.0% |
| !! | TAATGATTACCAACTTGTTG+TGG | - | chr1.4:87338523-87338542 | MS.gene90870:intron | 30.0% |
| !! | TGACTGAGTTGTTTGTTATT+TGG | - | chr1.4:87338967-87338986 | MS.gene90870:intron | 30.0% |
| !!! | CGAATTTTTTCATTGTCCTT+TGG | + | chr1.4:87340929-87340948 | None:intergenic | 30.0% |
| !!! | GGTGTCTTGAAGTATTTTTT+GGG | - | chr1.4:87339651-87339670 | MS.gene90870:intron | 30.0% |
| !!! | TTAGCTTGTTTTAGTCTAAG+TGG | - | chr1.4:87339996-87340015 | MS.gene90870:intron | 30.0% |
| !!! | TTTGTTTTACAATGTAGACC+AGG | - | chr1.4:87340225-87340244 | MS.gene90870:intron | 30.0% |
| AAAGATACCAATAGCATTCC+TGG | + | chr1.4:87339688-87339707 | None:intergenic | 35.0% | |
| AAGTAAAATTGAACACCACC+AGG | + | chr1.4:87340758-87340777 | None:intergenic | 35.0% | |
| AATCACTAACCTGTAAAGTG+GGG | + | chr1.4:87338253-87338272 | None:intergenic | 35.0% | |
| AATTCGAGAAGAACTAGAGA+AGG | - | chr1.4:87340943-87340962 | MS.gene90870:intron | 35.0% | |
| AGAGTATATTTAGGCCTAGA+TGG | - | chr1.4:87339319-87339338 | MS.gene90870:intron | 35.0% | |
| AGATGAGTGGTCAAAAATCA+TGG | - | chr1.4:87341349-87341368 | MS.gene90870:CDS | 35.0% | |
| AGCTTATGATTCTGCTTCAT+AGG | + | chr1.4:87339783-87339802 | None:intergenic | 35.0% | |
| AGTAGATTGCTAATTGTAGC+TGG | - | chr1.4:87340357-87340376 | MS.gene90870:intron | 35.0% | |
| AGTCTCCCATGTATATAAAC+AGG | + | chr1.4:87339149-87339168 | None:intergenic | 35.0% | |
| AGTTGCTGCACTTAAAGTAT+CGG | - | chr1.4:87341151-87341170 | MS.gene90870:CDS | 35.0% | |
| ATAAACAGGTGGAAATCAAC+AGG | + | chr1.4:87339135-87339154 | None:intergenic | 35.0% | |
| ATCACTACTATAGCCAAATG+CGG | + | chr1.4:87340804-87340823 | None:intergenic | 35.0% | |
| ATGGAGAAGAAAAATCAGAC+AGG | - | chr1.4:87338427-87338446 | MS.gene90870:CDS | 35.0% | |
| ATTCTTGAGACTGAGATTCT+AGG | - | chr1.4:87339738-87339757 | MS.gene90870:intron | 35.0% | |
| CAAACCTTCTATAACGATTG+TGG | + | chr1.4:87338796-87338815 | None:intergenic | 35.0% | |
| CACCAAATAGAAATTCGTCA+TGG | + | chr1.4:87341307-87341326 | None:intergenic | 35.0% | |
| CACTCACATAAGAGGTAATT+AGG | - | chr1.4:87339246-87339265 | MS.gene90870:intron | 35.0% | |
| CATGACGAATTTCTATTTGG+TGG | - | chr1.4:87341305-87341324 | MS.gene90870:CDS | 35.0% | |
| CTCACTTTGCACACATAAAA+AGG | + | chr1.4:87340451-87340470 | None:intergenic | 35.0% | |
| CTCTGATACCATGTATGAAA+AGG | + | chr1.4:87339415-87339434 | None:intergenic | 35.0% | |
| CTTGCAATATCACACAATTG+TGG | - | chr1.4:87339527-87339546 | MS.gene90870:intron | 35.0% | |
| GAAATGATCCAGTAGCTATA+TGG | - | chr1.4:87339583-87339602 | MS.gene90870:intron | 35.0% | |
| GAACAAGGAGTAGTCAAAAT+AGG | + | chr1.4:87339498-87339517 | None:intergenic | 35.0% | |
| GAATCACTAACCTGTAAAGT+GGG | + | chr1.4:87338254-87338273 | None:intergenic | 35.0% | |
| GACCATGACGAATTTCTATT+TGG | - | chr1.4:87341302-87341321 | MS.gene90870:CDS | 35.0% | |
| GCTACAATTAGCAATCTACT+CGG | + | chr1.4:87340357-87340376 | None:intergenic | 35.0% | |
| GCTTGACTGTAAACATGATA+TGG | + | chr1.4:87340861-87340880 | None:intergenic | 35.0% | |
| GGATTGTCAATGGTAAAAGA+AGG | + | chr1.4:87341443-87341462 | None:intergenic | 35.0% | |
| GTTCAATCACTCAAATCTGA+TGG | - | chr1.4:87338287-87338306 | MS.gene90870:intron | 35.0% | |
| TAAAGTGGGGTTTGAGAAAA+GGG | + | chr1.4:87338240-87338259 | None:intergenic | 35.0% | |
| TATACATGGGAGACTATTAG+CGG | - | chr1.4:87339154-87339173 | MS.gene90870:intron | 35.0% | |
| TCGTCCTATTAAAGACATGA+AGG | - | chr1.4:87338715-87338734 | MS.gene90870:intron | 35.0% | |
| TCTACAACTTCTTGAACTTG+AGG | + | chr1.4:87338467-87338486 | None:intergenic | 35.0% | |
| TTATCATCTTGCCACACTAT+CGG | + | chr1.4:87338689-87338708 | None:intergenic | 35.0% | |
| TTCACTTTCCATATAGCTAC+TGG | + | chr1.4:87339594-87339613 | None:intergenic | 35.0% | |
| TTCAGACAGAATTAGAGATC+TGG | - | chr1.4:87339092-87339111 | MS.gene90870:intron | 35.0% | |
| TTCTTATATATGAGACCGGA+GGG | + | chr1.4:87340075-87340094 | None:intergenic | 35.0% | |
| TTGTCCACAATCGTTATAGA+AGG | - | chr1.4:87338789-87338808 | MS.gene90870:intron | 35.0% | |
| TTTCTTATATATGAGACCGG+AGG | + | chr1.4:87340076-87340095 | None:intergenic | 35.0% | |
| ! | ACGTTTTCATAAGAAGGACT+TGG | - | chr1.4:87339629-87339648 | MS.gene90870:intron | 35.0% |
| ! | CACTTTTATTCTTAGGCCAA+AGG | - | chr1.4:87340910-87340929 | MS.gene90870:intron | 35.0% |
| ! | CGTTTTCATAAGAAGGACTT+GGG | - | chr1.4:87339630-87339649 | MS.gene90870:intron | 35.0% |
| ! | GAACACACGTTTTCATAAGA+AGG | - | chr1.4:87339623-87339642 | MS.gene90870:intron | 35.0% |
| ! | TAGCTAGCCTAGTAAAATAG+AGG | + | chr1.4:87339875-87339894 | None:intergenic | 35.0% |
| !!! | ATGGCATTTTTTTACTACCG+TGG | - | chr1.4:87341368-87341387 | MS.gene90870:CDS | 35.0% |
| !!! | GGGTGTCTTGAAGTATTTTT+TGG | - | chr1.4:87339650-87339669 | MS.gene90870:intron | 35.0% |
| AACCGACAATGGATCATTGA+AGG | - | chr1.4:87339938-87339957 | MS.gene90870:intron | 40.0% | |
| ACCAATTGTCAATGTCGTTC+AGG | + | chr1.4:87339837-87339856 | None:intergenic | 40.0% | |
| ACCTGAACGACATTGACAAT+TGG | - | chr1.4:87339833-87339852 | MS.gene90870:intron | 40.0% | |
| AGAAATTCGTCATGGTCAGA+TGG | + | chr1.4:87341299-87341318 | None:intergenic | 40.0% | |
| AGAAGGCTGTGCATATCATA+TGG | - | chr1.4:87340960-87340979 | MS.gene90870:intron | 40.0% | |
| AGCCTTCAATGATCCATTGT+CGG | + | chr1.4:87339943-87339962 | None:intergenic | 40.0% | |
| AGCGGACAATTAGGTGTATT+TGG | - | chr1.4:87339172-87339191 | MS.gene90870:intron | 40.0% | |
| AGTCTCTCATGTATACACAC+AGG | + | chr1.4:87340576-87340595 | None:intergenic | 40.0% | |
| AGTTTGGAAAACCAACACCT+AGG | + | chr1.4:87339440-87339459 | None:intergenic | 40.0% | |
| ATCATCAACATCATCGTCCT+CGG | + | chr1.4:87338660-87338679 | None:intergenic | 40.0% | |
| ATGATGATAAGCCGATAGTG+TGG | - | chr1.4:87338675-87338694 | MS.gene90870:intron | 40.0% | |
| ATGGATCATTGAAGGCTGAA+TGG | - | chr1.4:87339946-87339965 | MS.gene90870:intron | 40.0% | |
| ATTCATGCAACAACCGACAA+TGG | - | chr1.4:87339927-87339946 | MS.gene90870:intron | 40.0% | |
| ATTGTCAATGTCGTTCAGGT+TGG | + | chr1.4:87339833-87339852 | None:intergenic | 40.0% | |
| CATGTATACACACAGGTTCT+TGG | + | chr1.4:87340569-87340588 | None:intergenic | 40.0% | |
| CCTAGATGGAGTGATGTATT+CGG | - | chr1.4:87339333-87339352 | MS.gene90870:intron | 40.0% | |
| CTAAGTGGCTGAATGCTAAT+TGG | - | chr1.4:87340011-87340030 | MS.gene90870:intron | 40.0% | |
| CTAGATGGAGTGATGTATTC+GGG | - | chr1.4:87339334-87339353 | MS.gene90870:intron | 40.0% | |
| CTCCCATGTATATAAACAGG+TGG | + | chr1.4:87339146-87339165 | None:intergenic | 40.0% | |
| CTCTTGAAGAGAGACAAGAA+TGG | - | chr1.4:87338408-87338427 | MS.gene90870:CDS | 40.0% | |
| GACTAACATTCCAGATTTCC+AGG | - | chr1.4:87341409-87341428 | MS.gene90870:CDS | 40.0% | |
| GCAGCCTTCATGTCTTTAAT+AGG | + | chr1.4:87338722-87338741 | None:intergenic | 40.0% | |
| GCGGAAGTTATTTGCACATA+AGG | + | chr1.4:87340785-87340804 | None:intergenic | 40.0% | |
| GGAATCACTAACCTGTAAAG+TGG | + | chr1.4:87338255-87338274 | None:intergenic | 40.0% | |
| GGAATGTTAGTCAAACACGA+TGG | + | chr1.4:87341401-87341420 | None:intergenic | 40.0% | |
| GTAAAGTGGGGTTTGAGAAA+AGG | + | chr1.4:87338241-87338260 | None:intergenic | 40.0% | |
| GTGCAAATAACTTCCGCATT+TGG | - | chr1.4:87340788-87340807 | MS.gene90870:intron | 40.0% | |
| GTTAGTCAAACACGATGGTT+TGG | + | chr1.4:87341396-87341415 | None:intergenic | 40.0% | |
| GTTTGGAAAACCAACACCTA+GGG | + | chr1.4:87339439-87339458 | None:intergenic | 40.0% | |
| TAGATGGAGTGATGTATTCG+GGG | - | chr1.4:87339335-87339354 | MS.gene90870:intron | 40.0% | |
| TCACTCAAATCTGATGGTTC+TGG | - | chr1.4:87338293-87338312 | MS.gene90870:intron | 40.0% | |
| TCAGAACACTGGATTGTCAA+TGG | + | chr1.4:87341453-87341472 | None:intergenic | 40.0% | |
| TCAGTCAGAGTTCTCCAAAA+CGG | + | chr1.4:87338954-87338973 | None:intergenic | 40.0% | |
| TCTGCTGCCTTAAAGAACTA+TGG | - | chr1.4:87339461-87339480 | MS.gene90870:intron | 40.0% | |
| TCTTGTCGAAAAACTGTCCA+AGG | + | chr1.4:87338598-87338617 | None:intergenic | 40.0% | |
| TGCAAGTTGCAACATGAACA+AGG | + | chr1.4:87339513-87339532 | None:intergenic | 40.0% | |
| TGCTTGAGTAAGTAGCTGAA+TGG | - | chr1.4:87338833-87338852 | MS.gene90870:intron | 40.0% | |
| TTGAAACTATCTACTCCCTC+CGG | - | chr1.4:87340057-87340076 | MS.gene90870:intron | 40.0% | |
| TTTCTCAAACCCCACTTTAC+AGG | - | chr1.4:87338241-87338260 | MS.gene90870:CDS | 40.0% | |
| TTTGGAAAACCAACACCTAG+GGG | + | chr1.4:87339438-87339457 | None:intergenic | 40.0% | |
| ! | GAGACTATTAGCGGACAATT+AGG | - | chr1.4:87339163-87339182 | MS.gene90870:intron | 40.0% |
| ! | GGAATGTTTTCCTGGAAATC+TGG | + | chr1.4:87341422-87341441 | None:intergenic | 40.0% |
| !! | GTTGATGACTTGATTGTCTC+AGG | - | chr1.4:87339561-87339580 | MS.gene90870:intron | 40.0% |
| !! | TCAAATCTGATGGTTCTGGT+TGG | - | chr1.4:87338297-87338316 | MS.gene90870:intron | 40.0% |
| !! | TTACCAACTTGTTGTGGAAG+AGG | - | chr1.4:87338529-87338548 | MS.gene90870:intron | 40.0% |
| !!! | GTATTTTTTGGGTGTCACAG+TGG | - | chr1.4:87339662-87339681 | MS.gene90870:intron | 40.0% |
| !!! | TCTTTTTTGAAATGGGCTCC+TGG | - | chr1.4:87340737-87340756 | MS.gene90870:intron | 40.0% |
| AAGACATGAAGGCTGCTGAA+TGG | - | chr1.4:87338726-87338745 | MS.gene90870:intron | 45.0% | |
| AGACATGAAGGCTGCTGAAT+GGG | - | chr1.4:87338727-87338746 | MS.gene90870:intron | 45.0% | |
| CATAAGCTTGCATTAGCCCA+GGG | - | chr1.4:87339795-87339814 | MS.gene90870:intron | 45.0% | |
| CATAGGCACACTAACAGGTT+AGG | + | chr1.4:87339766-87339785 | None:intergenic | 45.0% | |
| CCGAATACATCACTCCATCT+AGG | + | chr1.4:87339336-87339355 | None:intergenic | 45.0% | |
| CGTATCATACATACTCCCTC+CGG | + | chr1.4:87340303-87340322 | None:intergenic | 45.0% | |
| GGAGGGAGTAGATAGTTTCA+AGG | + | chr1.4:87340058-87340077 | None:intergenic | 45.0% | |
| GGTTTGAGAAAAGGGTCTTC+CGG | + | chr1.4:87338232-87338251 | None:intergenic | 45.0% | |
| TCAAGAAGTTGTAGACACCG+AGG | - | chr1.4:87338472-87338491 | MS.gene90870:CDS | 45.0% | |
| TCAGCATCTTGAGGCCAATT+AGG | + | chr1.4:87338560-87338579 | None:intergenic | 45.0% | |
| TCATAAGCTTGCATTAGCCC+AGG | - | chr1.4:87339794-87339813 | MS.gene90870:intron | 45.0% | |
| TGCTTCATAGGCACACTAAC+AGG | + | chr1.4:87339771-87339790 | None:intergenic | 45.0% | |
| TGGAAGAGGAGGATCCTAAT+TGG | - | chr1.4:87338543-87338562 | MS.gene90870:intron | 45.0% | |
| TTGGTCAAGAAAAGGACCCT+GGG | + | chr1.4:87339814-87339833 | None:intergenic | 45.0% | |
| ! | AATGACGTCGAGAGCACATT+TGG | + | chr1.4:87339721-87339740 | None:intergenic | 45.0% |
| ! | AATTGGCCTCAAGATGCTGA+TGG | - | chr1.4:87338560-87338579 | MS.gene90870:intron | 45.0% |
| ! | ATGACGTCGAGAGCACATTT+GGG | + | chr1.4:87339720-87339739 | None:intergenic | 45.0% |
| ! | GGAAGATAATGATGATGCCG+AGG | - | chr1.4:87338640-87338659 | MS.gene90870:CDS | 45.0% |
| ! | GGTTCTGGTTGGAAGAAAAG+AGG | - | chr1.4:87338308-87338327 | MS.gene90870:intron | 45.0% |
| !! | CACACGCACGAGAAAGTATT+CGG | + | chr1.4:87339040-87339059 | None:intergenic | 45.0% |
| !! | CGTTCAGGTTGGTCAAGAAA+AGG | + | chr1.4:87339822-87339841 | None:intergenic | 45.0% |
| !! | CTTTAAGGCAGCAGAGAGTT+TGG | + | chr1.4:87339456-87339475 | None:intergenic | 45.0% |
| !!! | TTTTTGAAATGGGCTCCTGG+TGG | - | chr1.4:87340740-87340759 | MS.gene90870:intron | 45.0% |
| !! | ATATCATTATAATATATAAT+AGG | + | chr1.4:87341091-87341110 | None:intergenic | 5.0% |
| ACAGTGGCCAGGAATGCTAT+TGG | - | chr1.4:87339678-87339697 | MS.gene90870:intron | 50.0% | |
| CAATTCGCAGTGCAGATGAG+TGG | - | chr1.4:87341336-87341355 | MS.gene90870:CDS | 50.0% | |
| CCTCAAGATGCTGATGGTTG+GGG | - | chr1.4:87338566-87338585 | MS.gene90870:intron | 50.0% | |
| CCTCCTCTTCCACAACAAGT+TGG | + | chr1.4:87338535-87338554 | None:intergenic | 50.0% | |
| CTGCAGAGTTATACTCCCTC+CGG | - | chr1.4:87340150-87340169 | MS.gene90870:intron | 50.0% | |
| GCCTCAAGATGCTGATGGTT+GGG | - | chr1.4:87338565-87338584 | MS.gene90870:intron | 50.0% | |
| GTTGGTCAAGAAAAGGACCC+TGG | + | chr1.4:87339815-87339834 | None:intergenic | 50.0% | |
| TACATGGTATCAGAGCCCCT+AGG | - | chr1.4:87339420-87339439 | MS.gene90870:intron | 50.0% | |
| ! | AACACGATGGTTTGGCTCCA+CGG | + | chr1.4:87341388-87341407 | None:intergenic | 50.0% |
| !! | CCAACTTGTTGTGGAAGAGG+AGG | - | chr1.4:87338532-87338551 | MS.gene90870:intron | 50.0% |
| CATGAAGGCTGCTGAATGGG+AGG | - | chr1.4:87338730-87338749 | MS.gene90870:intron | 55.0% | |
| CCCCAACCATCAGCATCTTG+AGG | + | chr1.4:87338569-87338588 | None:intergenic | 55.0% | |
| GATGGTTGGGGATTCAGCCT+TGG | - | chr1.4:87338578-87338597 | MS.gene90870:intron | 55.0% | |
| GGCCTCAAGATGCTGATGGT+TGG | - | chr1.4:87338564-87338583 | MS.gene90870:intron | 55.0% | |
| GTATCAGAGCCCCTAGGTGT+TGG | - | chr1.4:87339426-87339445 | MS.gene90870:intron | 55.0% | |
| ! | CGTCGAGAGCACATTTGGGT+TGG | + | chr1.4:87339716-87339735 | None:intergenic | 55.0% |
| ! | TGATAGCGACGACGATGACG+AGG | - | chr1.4:87338355-87338374 | MS.gene90870:intron | 55.0% |
| !! | CGCACGAGAAAGTATTCGGC+AGG | + | chr1.4:87339036-87339055 | None:intergenic | 55.0% |
| !! | TTTTGGGTGTCACAGTGGCC+AGG | - | chr1.4:87339667-87339686 | MS.gene90870:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87338140 | 87341472 | 87338140 | ID=MS.gene90870 |
| chr1.4 | mRNA | 87338140 | 87341472 | 87338140 | ID=MS.gene90870.t1;Parent=MS.gene90870 |
| chr1.4 | exon | 87341031 | 87341472 | 87341031 | ID=MS.gene90870.t1.exon1;Parent=MS.gene90870.t1 |
| chr1.4 | CDS | 87341031 | 87341472 | 87341031 | ID=cds.MS.gene90870.t1;Parent=MS.gene90870.t1 |
| chr1.4 | exon | 87340802 | 87340919 | 87340802 | ID=MS.gene90870.t1.exon2;Parent=MS.gene90870.t1 |
| chr1.4 | CDS | 87340802 | 87340919 | 87340802 | ID=cds.MS.gene90870.t1;Parent=MS.gene90870.t1 |
| chr1.4 | exon | 87338606 | 87338687 | 87338606 | ID=MS.gene90870.t1.exon3;Parent=MS.gene90870.t1 |
| chr1.4 | CDS | 87338606 | 87338687 | 87338606 | ID=cds.MS.gene90870.t1;Parent=MS.gene90870.t1 |
| chr1.4 | exon | 87338385 | 87338496 | 87338385 | ID=MS.gene90870.t1.exon4;Parent=MS.gene90870.t1 |
| chr1.4 | CDS | 87338385 | 87338496 | 87338385 | ID=cds.MS.gene90870.t1;Parent=MS.gene90870.t1 |
| chr1.4 | exon | 87338140 | 87338276 | 87338140 | ID=MS.gene90870.t1.exon5;Parent=MS.gene90870.t1 |
| chr1.4 | CDS | 87338140 | 87338276 | 87338140 | ID=cds.MS.gene90870.t1;Parent=MS.gene90870.t1 |
| Gene Sequence |
| Protein sequence |
