AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011632.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011632.01.T01 MTR_3g007470 88.571 315 17 2 1 296 1 315 0.0 528
MsG0380011632.01.T01 MTR_3g072830 58.389 298 105 6 12 292 79 374 6.57e-110 326
MsG0380011632.01.T01 MTR_3g072840 61.011 277 91 5 35 296 103 377 1.98e-96 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011632.01.T01 AT2G41705 50.000 308 120 7 7 296 100 391 1.93e-83 259
MsG0380011632.01.T01 AT2G41705 50.000 308 120 7 7 296 100 391 1.93e-83 259
MsG0380011632.01.T01 AT2G41705 50.000 308 120 7 7 296 100 391 1.93e-83 259
MsG0380011632.01.T01 AT2G41705 50.000 308 120 7 7 296 100 391 1.93e-83 259

Find 64 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGGATCGCTTGCATTAT+TGG 0.169818 3:+2732380 MsG0380011632.01.T01:CDS
TATACTCTGGACAAGTTATT+TGG 0.190006 3:+2731087 MsG0380011632.01.T01:CDS
GTTTCAAGTGGCTTCTTATA+AGG 0.252360 3:+2732186 MsG0380011632.01.T01:CDS
ATGCTTGAACTTAGTGTTAC+TGG 0.264819 3:+2731473 MsG0380011632.01.T01:CDS
GATCAAGAGGTTTGTTGAAT+TGG 0.285501 3:+2732459 MsG0380011632.01.T01:CDS
TTCCACCTTTGCCTTGGTCT+TGG 0.290430 3:-2732243 None:intergenic
TGCTTCATATTTGATTCATT+TGG 0.319711 3:+2730258 MsG0380011632.01.T01:CDS
CCTTGACCTTCCCTCTAATA+TGG 0.322335 3:+2731152 MsG0380011632.01.T01:CDS
CTAATCCATGTCCATTTAAT+CGG 0.327520 3:-2732436 None:intergenic
AACTTAGTGTTACTGGGAAT+TGG 0.333110 3:+2731480 MsG0380011632.01.T01:CDS
CGATTAAATGGACATGGATT+AGG 0.339220 3:+2732437 MsG0380011632.01.T01:CDS
ATCAAATGTGTCCAAGTATC+TGG 0.345089 3:+2731388 MsG0380011632.01.T01:CDS
CTATTGGTGTGTGGATTAGA+TGG 0.352343 3:+2732405 MsG0380011632.01.T01:CDS
AATTGGCTCTTTGTTGTGCT+TGG 0.359346 3:+2731497 MsG0380011632.01.T01:CDS
GTTGTGCTTGGCTTTCTAAT+AGG 0.360921 3:+2731509 MsG0380011632.01.T01:CDS
AACAAATTGCAGCTTCATCT+TGG 0.384111 3:+2729876 MsG0380011632.01.T01:CDS
GCTTGCATTATTGGACCTAT+TGG 0.389556 3:+2732389 MsG0380011632.01.T01:CDS
TAAAGAATTGCCAAAGCTAC+TGG 0.400015 3:+2730231 MsG0380011632.01.T01:CDS
AGCTTTGGCAATTCTTTACT+AGG 0.401365 3:-2730226 None:intergenic
GAAGCCTTCCACCTTTGCCT+TGG 0.401735 3:-2732249 None:intergenic
GCACTAACAACTGGTTACTT+AGG 0.409745 3:+2731416 MsG0380011632.01.T01:CDS
CATCTAATCCACACACCAAT+AGG 0.415558 3:-2732404 None:intergenic
TTGTTCAGAGGAGACAGAAT+TGG 0.419387 3:-2729904 None:intergenic
GTCTAACAACGTTCAGCGGC+TGG 0.427914 3:+2731441 MsG0380011632.01.T01:CDS
GATACTTGGACACATTTGAT+AGG 0.430554 3:-2731385 None:intergenic
TTGTTGAATTGGATGCGATT+TGG 0.438896 3:+2732470 MsG0380011632.01.T01:CDS
CAAAGTAGAGACCATATTAG+AGG 0.448077 3:-2731163 None:intergenic
GGTCAAGGTAAAGAATAGTT+TGG 0.448910 3:-2731137 None:intergenic
CTGGCTGTTGCACTAACAAC+TGG 0.450496 3:+2731407 MsG0380011632.01.T01:CDS
GAAGCACTATCCAGTAGCTT+TGG 0.461327 3:-2730241 None:intergenic
CACTAACAACTGGTTACTTA+GGG 0.468627 3:+2731417 MsG0380011632.01.T01:CDS
TAGTGCAACAGCCAGATACT+TGG 0.469450 3:-2731399 None:intergenic
CTCCTTCAATGCTTAAAAGA+GGG 0.481988 3:-2729932 None:intergenic
TCTCCTTCAATGCTTAAAAG+AGG 0.496148 3:-2729933 None:intergenic
AGATTCTGAAGACATACAAC+AGG 0.496202 3:+2729956 MsG0380011632.01.T01:CDS
TTTGGTATAGAAACAGCTAA+AGG 0.499560 3:+2732164 MsG0380011632.01.T01:intron
GGCTTGTTATGGGGTATTAG+CGG 0.501647 3:+2732314 MsG0380011632.01.T01:CDS
CTAGTCACATGACCAACACT+AGG 0.506897 3:-2731111 None:intergenic
TAAGGCTAAACGTGACTTCA+CGG 0.507240 3:+2732204 MsG0380011632.01.T01:CDS
TGTCTCTGCTGCTTGTATCA+TGG 0.508900 3:+2732508 MsG0380011632.01.T01:CDS
TAATCCATGTCCATTTAATC+GGG 0.510063 3:-2732435 None:intergenic
ATGATTGCTGAATTCAAGAA+TGG 0.528647 3:+2732344 MsG0380011632.01.T01:CDS
TGCTTGAACTTAGTGTTACT+GGG 0.530249 3:+2731474 MsG0380011632.01.T01:CDS
AGCCAAGACCAAGGCAAAGG+TGG 0.538663 3:+2732241 MsG0380011632.01.T01:CDS
AAGTTATTTGGCCCTAGTGT+TGG 0.545174 3:+2731099 MsG0380011632.01.T01:CDS
ACATCACTTAGTAGTTATGC+TGG 0.551387 3:+2732274 MsG0380011632.01.T01:CDS
GGTATTAACAAGATATACTC+TGG 0.561065 3:+2731074 MsG0380011632.01.T01:intron
AAGAGGGGACATTTGTTCAG+AGG 0.563333 3:-2729916 None:intergenic
GGACATGGATTAGGATCAAG+AGG 0.570024 3:+2732446 MsG0380011632.01.T01:CDS
CATGCAATGGAGCATGATGT+TGG 0.573305 3:+2729849 MsG0380011632.01.T01:exon
TTATCCCGATTAAATGGACA+TGG 0.574742 3:+2732431 MsG0380011632.01.T01:CDS
TAGAGCCAAGACCAAGGCAA+AGG 0.580140 3:+2732238 MsG0380011632.01.T01:CDS
AAGACCAAGGCAAAGGTGGA+AGG 0.581372 3:+2732245 MsG0380011632.01.T01:CDS
TCCTTCAATGCTTAAAAGAG+GGG 0.582845 3:-2729931 None:intergenic
TAGAGACCATATTAGAGGGA+AGG 0.587990 3:-2731158 None:intergenic
AAAGTAGAGACCATATTAGA+GGG 0.599374 3:-2731162 None:intergenic
CATACGCATATCACATGCAA+TGG 0.599611 3:+2729836 MsG0380011632.01.T01:exon
TTATTGGACCTATTGGTGTG+TGG 0.604460 3:+2732396 MsG0380011632.01.T01:CDS
AAACAGCTAAAGGTTTCAAG+TGG 0.608710 3:+2732174 MsG0380011632.01.T01:CDS
GGGAGTCTAACAACGTTCAG+CGG 0.633659 3:+2731437 MsG0380011632.01.T01:CDS
CCATATTAGAGGGAAGGTCA+AGG 0.633890 3:-2731152 None:intergenic
AGCTAGTAGAGCCAAGACCA+AGG 0.636125 3:+2732232 MsG0380011632.01.T01:CDS
ATGGTGAAAATGCTTATCTG+TGG 0.657260 3:+2732363 MsG0380011632.01.T01:CDS
TAGTCACATGACCAACACTA+GGG 0.657737 3:-2731110 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAATCATGTATTATA+GGG + Chr3:2732009-2732028 MsG0380011632.01.T01:intron 15.0%
!!! AGAAATAATTTGAAAGTATT+CGG - Chr3:2731289-2731308 None:intergenic 15.0%
!!! TTTATATCTTTTATGATTTG+AGG - Chr3:2730086-2730105 None:intergenic 15.0%
!! CAACAATAATCATGTATTAT+AGG + Chr3:2732008-2732027 MsG0380011632.01.T01:intron 20.0%
!!! AAGATTCAAAACATTTTTGT+TGG + Chr3:2730002-2730021 MsG0380011632.01.T01:intron 20.0%
!!! AATTGTAAGTTTTGTAATAC+AGG + Chr3:2731958-2731977 MsG0380011632.01.T01:intron 20.0%
!!! AATTTAAGGTGCAAAAATTT+AGG - Chr3:2731203-2731222 None:intergenic 20.0%
!!! ACTTTTATGAATATCTTTCT+AGG + Chr3:2731316-2731335 MsG0380011632.01.T01:intron 20.0%
!!! TACTGTTCAATAACTTTTTA+CGG + Chr3:2731716-2731735 MsG0380011632.01.T01:intron 20.0%
!!! TCATTTTCTGTTTATAACAT+TGG + Chr3:2730691-2730710 MsG0380011632.01.T01:intron 20.0%
!!! TTGTTTTGCTATTATAATTC+AGG + Chr3:2731053-2731072 MsG0380011632.01.T01:intron 20.0%
!!! TTTTGTTTTGCTATAGTAAA+TGG + Chr3:2730167-2730186 MsG0380011632.01.T01:intron 20.0%
! ATTAATGCACTTATGAATTC+TGG + Chr3:2730976-2730995 MsG0380011632.01.T01:intron 25.0%
! CAGAGCTTCTTAAAAATTTA+AGG - Chr3:2731217-2731236 None:intergenic 25.0%
! CATTAATTACCCAAAGATAA+AGG - Chr3:2730963-2730982 None:intergenic 25.0%
! GTTGTTCATACTTTATACAA+TGG - Chr3:2730814-2730833 None:intergenic 25.0%
! TAGTGTAAAATGTTTCACAT+TGG - Chr3:2730117-2730136 None:intergenic 25.0%
! TGCTTCATATTTGATTCATT+TGG + Chr3:2730258-2730277 MsG0380011632.01.T01:CDS 25.0%
! TTATGAATATCTTTCTAGGT+TGG + Chr3:2731320-2731339 MsG0380011632.01.T01:intron 25.0%
! TTTATATGAGAACTAGAGAA+GGG + Chr3:2731787-2731806 MsG0380011632.01.T01:intron 25.0%
!! AAAAAAGTCTTTGTTGCTTA+TGG - Chr3:2731253-2731272 None:intergenic 25.0%
!! AATTTCAGCTTTATGATGTT+TGG + Chr3:2730546-2730565 MsG0380011632.01.T01:intron 25.0%
!! TATACCAAATATGATGGAAA+AGG - Chr3:2732153-2732172 None:intergenic 25.0%
!! TGTTTCTATACCAAATATGA+TGG - Chr3:2732159-2732178 None:intergenic 25.0%
!! TTTTATATGAGAACTAGAGA+AGG + Chr3:2731786-2731805 MsG0380011632.01.T01:intron 25.0%
!!! ATAAGTATGTTTTAGTGGTA+TGG + Chr3:2731554-2731573 MsG0380011632.01.T01:intron 25.0%
!!! GTTTGATAAGTATGTTTTAG+TGG + Chr3:2731549-2731568 MsG0380011632.01.T01:intron 25.0%
AAAAATTTAGGAGTGAGGAA+GGG - Chr3:2731191-2731210 None:intergenic 30.0%
AAAGTAGAGACCATATTAGA+GGG - Chr3:2731165-2731184 None:intergenic 30.0%
ATGATTGCTGAATTCAAGAA+TGG + Chr3:2732344-2732363 MsG0380011632.01.T01:CDS 30.0%
CTAATCCATGTCCATTTAAT+CGG - Chr3:2732439-2732458 None:intergenic 30.0%
GGTATTAACAAGATATACTC+TGG + Chr3:2731074-2731093 MsG0380011632.01.T01:intron 30.0%
TAATCCATGTCCATTTAATC+GGG - Chr3:2732438-2732457 None:intergenic 30.0%
TATACTCTGGACAAGTTATT+TGG + Chr3:2731087-2731106 MsG0380011632.01.T01:CDS 30.0%
TATTTCCATTTGACCATTAC+TGG + Chr3:2730368-2730387 MsG0380011632.01.T01:intron 30.0%
TGAGGATTAAGATTGAATGA+CGG - Chr3:2730068-2730087 None:intergenic 30.0%
TGTTGCATTCCTTTATCTTT+GGG + Chr3:2730951-2730970 MsG0380011632.01.T01:intron 30.0%
TTGTTGCATTCCTTTATCTT+TGG + Chr3:2730950-2730969 MsG0380011632.01.T01:intron 30.0%
TTTGGTATAGAAACAGCTAA+AGG + Chr3:2732164-2732183 MsG0380011632.01.T01:intron 30.0%
! ACTATTTTCAGTTCATGTAG+TGG + Chr3:2730409-2730428 MsG0380011632.01.T01:intron 30.0%
! AGGATGAGCTTTTGAATAAT+TGG + Chr3:2732102-2732121 MsG0380011632.01.T01:intron 30.0%
! TGGATTTTATCCCGATTAAA+TGG + Chr3:2732425-2732444 MsG0380011632.01.T01:CDS 30.0%
!! GACTTGTATTTTTCAACCTT+AGG + Chr3:2730852-2730871 MsG0380011632.01.T01:intron 30.0%
!! TTGATTCATTTGGCTGTTTT+TGG + Chr3:2730268-2730287 MsG0380011632.01.T01:CDS 30.0%
AAACAGCTAAAGGTTTCAAG+TGG + Chr3:2732174-2732193 MsG0380011632.01.T01:CDS 35.0%
AACAAATTGCAGCTTCATCT+TGG + Chr3:2729876-2729895 MsG0380011632.01.T01:CDS 35.0%
ACACACACACATATAAGAGA+AGG - Chr3:2732048-2732067 None:intergenic 35.0%
ACATCACTTAGTAGTTATGC+TGG + Chr3:2732274-2732293 MsG0380011632.01.T01:CDS 35.0%
ATCAAATGTGTCCAAGTATC+TGG + Chr3:2731388-2731407 MsG0380011632.01.T01:CDS 35.0%
ATGCTTGAACTTAGTGTTAC+TGG + Chr3:2731473-2731492 MsG0380011632.01.T01:CDS 35.0%
ATGGTGAAAATGCTTATCTG+TGG + Chr3:2732363-2732382 MsG0380011632.01.T01:CDS 35.0%
CAAAAATTTAGGAGTGAGGA+AGG - Chr3:2731192-2731211 None:intergenic 35.0%
CAAAGTAGAGACCATATTAG+AGG - Chr3:2731166-2731185 None:intergenic 35.0%
CACTAACAACTGGTTACTTA+GGG + Chr3:2731417-2731436 MsG0380011632.01.T01:CDS 35.0%
CGATTAAATGGACATGGATT+AGG + Chr3:2732437-2732456 MsG0380011632.01.T01:CDS 35.0%
CTCCTTCAATGCTTAAAAGA+GGG - Chr3:2729935-2729954 None:intergenic 35.0%
GACTATCTTCATCATCTTTG+AGG + Chr3:2730729-2730748 MsG0380011632.01.T01:intron 35.0%
GAGAAGGGATCAAATTACAT+TGG + Chr3:2731802-2731821 MsG0380011632.01.T01:intron 35.0%
GATACTTGGACACATTTGAT+AGG - Chr3:2731388-2731407 None:intergenic 35.0%
GGTCAAGGTAAAGAATAGTT+TGG - Chr3:2731140-2731159 None:intergenic 35.0%
TAAAGAATTGCCAAAGCTAC+TGG + Chr3:2730231-2730250 MsG0380011632.01.T01:CDS 35.0%
TATATGACAAAACTCACCGT+TGG + Chr3:2731744-2731763 MsG0380011632.01.T01:intron 35.0%
TCCTTCAATGCTTAAAAGAG+GGG - Chr3:2729934-2729953 None:intergenic 35.0%
TCTCCTTCAATGCTTAAAAG+AGG - Chr3:2729936-2729955 None:intergenic 35.0%
TCTGGTCATACTTTCATACT+AGG + Chr3:2730994-2731013 MsG0380011632.01.T01:intron 35.0%
TGAATAATTGGAGTTCTGCA+GGG + Chr3:2732114-2732133 MsG0380011632.01.T01:intron 35.0%
TGAGATAGAAGCTCATGTAA+TGG + Chr3:2730627-2730646 MsG0380011632.01.T01:intron 35.0%
TTATCCCGATTAAATGGACA+TGG + Chr3:2732431-2732450 MsG0380011632.01.T01:CDS 35.0%
TTGAATAATTGGAGTTCTGC+AGG + Chr3:2732113-2732132 MsG0380011632.01.T01:intron 35.0%
TTGTTGAATTGGATGCGATT+TGG + Chr3:2732470-2732489 MsG0380011632.01.T01:CDS 35.0%
! AACTTAGTGTTACTGGGAAT+TGG + Chr3:2731480-2731499 MsG0380011632.01.T01:CDS 35.0%
! AGATTCTGAAGACATACAAC+AGG + Chr3:2729956-2729975 MsG0380011632.01.T01:CDS 35.0%
! AGCTTTGGCAATTCTTTACT+AGG - Chr3:2730229-2730248 None:intergenic 35.0%
! GTTGCCTTTTCCATCATATT+TGG + Chr3:2732146-2732165 MsG0380011632.01.T01:intron 35.0%
! GTTTCAAGTGGCTTCTTATA+AGG + Chr3:2732186-2732205 MsG0380011632.01.T01:CDS 35.0%
! TGCTTGAACTTAGTGTTACT+GGG + Chr3:2731474-2731493 MsG0380011632.01.T01:CDS 35.0%
! TTCATCATCTTTGAGGATCT+AGG + Chr3:2730736-2730755 MsG0380011632.01.T01:intron 35.0%
!! GATCAAGAGGTTTGTTGAAT+TGG + Chr3:2732459-2732478 MsG0380011632.01.T01:CDS 35.0%
!!! CAGTTTTAAGCAGATTCCTA+AGG - Chr3:2730871-2730890 None:intergenic 35.0%
!!! CTGATTTTAGGCTTGTTATG+GGG + Chr3:2732305-2732324 MsG0380011632.01.T01:CDS 35.0%
!!! CTGGTGTTTTTGCTGATTTT+AGG + Chr3:2732293-2732312 MsG0380011632.01.T01:CDS 35.0%
!!! GCTGATTTTAGGCTTGTTAT+GGG + Chr3:2732304-2732323 MsG0380011632.01.T01:CDS 35.0%
!!! TAGGTTGGTTCTTTTCTGAT+GGG + Chr3:2731335-2731354 MsG0380011632.01.T01:intron 35.0%
!!! TGCTGATTTTAGGCTTGTTA+TGG + Chr3:2732303-2732322 MsG0380011632.01.T01:CDS 35.0%
!!! TTGGCTGTTTTTGGTATTCT+CGG + Chr3:2730277-2730296 MsG0380011632.01.T01:CDS 35.0%
AAGTTATTTGGCCCTAGTGT+TGG + Chr3:2731099-2731118 MsG0380011632.01.T01:CDS 40.0%
AATTATCGCAGTCTATGCAG+CGG + Chr3:2732070-2732089 MsG0380011632.01.T01:intron 40.0%
ATCGTAACTCCAACCAGTAA+TGG - Chr3:2730384-2730403 None:intergenic 40.0%
CAGAGGAACTTTCAATCCAA+CGG - Chr3:2731763-2731782 None:intergenic 40.0%
CATACGCATATCACATGCAA+TGG + Chr3:2729836-2729855 MsG0380011632.01.T01:exon 40.0%
CATCTAATCCACACACCAAT+AGG - Chr3:2732407-2732426 None:intergenic 40.0%
CGGGGTAATATTCTATTCTG+TGG + Chr3:2730297-2730316 MsG0380011632.01.T01:intron 40.0%
GCACTAACAACTGGTTACTT+AGG + Chr3:2731416-2731435 MsG0380011632.01.T01:CDS 40.0%
GCTTGCATTATTGGACCTAT+TGG + Chr3:2732389-2732408 MsG0380011632.01.T01:CDS 40.0%
GGAATAAATGCAACTACTGC+AGG - Chr3:2730793-2730812 None:intergenic 40.0%
GGTGCAAAAATTTAGGAGTG+AGG - Chr3:2731196-2731215 None:intergenic 40.0%
GTGTGTGTATAGAGAGATAG+AGG + Chr3:2731657-2731676 MsG0380011632.01.T01:intron 40.0%
TAAGGCTAAACGTGACTTCA+CGG + Chr3:2732204-2732223 MsG0380011632.01.T01:CDS 40.0%
TAGAGACCATATTAGAGGGA+AGG - Chr3:2731161-2731180 None:intergenic 40.0%
TAGTCACATGACCAACACTA+GGG - Chr3:2731113-2731132 None:intergenic 40.0%
TCCAACCAGTAATGGTCAAA+TGG - Chr3:2730376-2730395 None:intergenic 40.0%
TCCATTTGACCATTACTGGT+TGG + Chr3:2730372-2730391 MsG0380011632.01.T01:intron 40.0%
TTATTGGACCTATTGGTGTG+TGG + Chr3:2732396-2732415 MsG0380011632.01.T01:CDS 40.0%
TTGTTCAGAGGAGACAGAAT+TGG - Chr3:2729907-2729926 None:intergenic 40.0%
! AATTGGCTCTTTGTTGTGCT+TGG + Chr3:2731497-2731516 MsG0380011632.01.T01:CDS 40.0%
! GTTCTCATATAAAAGCGCAG+AGG - Chr3:2731780-2731799 None:intergenic 40.0%
! GTTGTGCTTGGCTTTCTAAT+AGG + Chr3:2731509-2731528 MsG0380011632.01.T01:CDS 40.0%
! TCTTTTCTGATGGGATGGTT+TGG + Chr3:2731344-2731363 MsG0380011632.01.T01:CDS 40.0%
!! CTATTGGTGTGTGGATTAGA+TGG + Chr3:2732405-2732424 MsG0380011632.01.T01:CDS 40.0%
!! TTGGTTCTTTTCTGATGGGA+TGG + Chr3:2731339-2731358 MsG0380011632.01.T01:CDS 40.0%
!!! CTAGGTTGGTTCTTTTCTGA+TGG + Chr3:2731334-2731353 MsG0380011632.01.T01:intron 40.0%
!!! TCCCCTCTTTTAAGCATTGA+AGG + Chr3:2729930-2729949 MsG0380011632.01.T01:CDS 40.0%
!!! TGGCTGTTTTTGGTATTCTC+GGG + Chr3:2730278-2730297 MsG0380011632.01.T01:CDS 40.0%
AAGAGGGGACATTTGTTCAG+AGG - Chr3:2729919-2729938 None:intergenic 45.0%
CATGCAATGGAGCATGATGT+TGG + Chr3:2729849-2729868 MsG0380011632.01.T01:exon 45.0%
CCATATTAGAGGGAAGGTCA+AGG - Chr3:2731155-2731174 None:intergenic 45.0%
CCTTGACCTTCCCTCTAATA+TGG + Chr3:2731152-2731171 MsG0380011632.01.T01:CDS 45.0%
CTAGTCACATGACCAACACT+AGG - Chr3:2731114-2731133 None:intergenic 45.0%
CTATGCAGCGGTGAATTGAT+AGG + Chr3:2732082-2732101 MsG0380011632.01.T01:intron 45.0%
CTGTGGATCGCTTGCATTAT+TGG + Chr3:2732380-2732399 MsG0380011632.01.T01:CDS 45.0%
TAGTGCAACAGCCAGATACT+TGG - Chr3:2731402-2731421 None:intergenic 45.0%
TGACTGTTGTCTTCAGTTGC+AGG + Chr3:2730201-2730220 MsG0380011632.01.T01:intron 45.0%
! GAAGCACTATCCAGTAGCTT+TGG - Chr3:2730244-2730263 None:intergenic 45.0%
! TGTCTCTGCTGCTTGTATCA+TGG + Chr3:2732508-2732527 MsG0380011632.01.T01:CDS 45.0%
!! GGACATGGATTAGGATCAAG+AGG + Chr3:2732446-2732465 MsG0380011632.01.T01:CDS 45.0%
!! GGCTTGTTATGGGGTATTAG+CGG + Chr3:2732314-2732333 MsG0380011632.01.T01:CDS 45.0%
!!! GGCTGTTTTTGGTATTCTCG+GGG + Chr3:2730279-2730298 MsG0380011632.01.T01:CDS 45.0%
AAGACCAAGGCAAAGGTGGA+AGG + Chr3:2732245-2732264 MsG0380011632.01.T01:CDS 50.0%
AGCTAGTAGAGCCAAGACCA+AGG + Chr3:2732232-2732251 MsG0380011632.01.T01:CDS 50.0%
CTGGCTGTTGCACTAACAAC+TGG + Chr3:2731407-2731426 MsG0380011632.01.T01:CDS 50.0%
GGGAGTCTAACAACGTTCAG+CGG + Chr3:2731437-2731456 MsG0380011632.01.T01:CDS 50.0%
TAGAGCCAAGACCAAGGCAA+AGG + Chr3:2732238-2732257 MsG0380011632.01.T01:CDS 50.0%
TTCCACCTTTGCCTTGGTCT+TGG - Chr3:2732246-2732265 None:intergenic 50.0%
AGCCAAGACCAAGGCAAAGG+TGG + Chr3:2732241-2732260 MsG0380011632.01.T01:CDS 55.0%
GAAGCCTTCCACCTTTGCCT+TGG - Chr3:2732252-2732271 None:intergenic 55.0%
GTCTAACAACGTTCAGCGGC+TGG + Chr3:2731441-2731460 MsG0380011632.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 2729750 2732568 2729750 ID=MsG0380011632.01;Name=MsG0380011632.01
Chr3 mRNA 2729750 2732568 2729750 ID=MsG0380011632.01.T01;Parent=MsG0380011632.01;Name=MsG0380011632.01.T01;_AED=0.42;_eAED=0.43;_QI=105|0.25|0.2|1|1|1|5|0|297
Chr3 exon 2729750 2729977 2729750 ID=MsG0380011632.01.T01:exon:835;Parent=MsG0380011632.01.T01
Chr3 exon 2730217 2730300 2730217 ID=MsG0380011632.01.T01:exon:836;Parent=MsG0380011632.01.T01
Chr3 exon 2731075 2731173 2731075 ID=MsG0380011632.01.T01:exon:837;Parent=MsG0380011632.01.T01
Chr3 exon 2731338 2731530 2731338 ID=MsG0380011632.01.T01:exon:838;Parent=MsG0380011632.01.T01
Chr3 exon 2732174 2732568 2732174 ID=MsG0380011632.01.T01:exon:839;Parent=MsG0380011632.01.T01
Chr3 five_prime_UTR 2729750 2729854 2729750 ID=MsG0380011632.01.T01:five_prime_utr;Parent=MsG0380011632.01.T01
Chr3 CDS 2729855 2729977 2729855 ID=MsG0380011632.01.T01:cds;Parent=MsG0380011632.01.T01
Chr3 CDS 2730217 2730300 2730217 ID=MsG0380011632.01.T01:cds;Parent=MsG0380011632.01.T01
Chr3 CDS 2731075 2731173 2731075 ID=MsG0380011632.01.T01:cds;Parent=MsG0380011632.01.T01
Chr3 CDS 2731338 2731530 2731338 ID=MsG0380011632.01.T01:cds;Parent=MsG0380011632.01.T01
Chr3 CDS 2732174 2732568 2732174 ID=MsG0380011632.01.T01:cds;Parent=MsG0380011632.01.T01
Gene Sequence

>MsG0380011632.01.T01

ATGGAGCATGATGTTGGAGTTAACAAATTGCAGCTTCATCTTGGTGCATCCAATTCTGTCTCCTCTGAACAAATGTCCCCTCTTTTAAGCATTGAAGGAGAAGATTCTGAAGACATACAACAGTTGCAGGAACCTAGTAAAGAATTGCCAAAGCTACTGGATAGTGCTTCATATTTGATTCATTTGGCTGTTTTTGGTATTCTCGGGGTATTAACAAGATATACTCTGGACAAGTTATTTGGCCCTAGTGTTGGTCATGTGACTAGTGACCAAACTATTCTTTACCTTGACCTTCCCTCTAATATGGTTGGTTCTTTTCTGATGGGATGGTTTGGTGTTGTATTCAAAGAAGACCTATCAAATGTGTCCAAGTATCTGGCTGTTGCACTAACAACTGGTTACTTAGGGAGTCTAACAACGTTCAGCGGCTGGAATCAGAAAATGCTTGAACTTAGTGTTACTGGGAATTGGCTCTTTGTTGTGCTTGGCTTTCTAATAGAAACAGCTAAAGGTTTCAAGTGGCTTCTTATAAGGCTAAACGTGACTTCACGGAGTGAAGCTAGTAGAGCCAAGACCAAGGCAAAGGTGGAAGGCTTCAAACATCACTTAGTAGTTATGCTGGTGTTTTTGCTGATTTTAGGCTTGTTATGGGGTATTAGCGGTGTATTGATGATTGCTGAATTCAAGAATGGTGAAAATGCTTATCTGTGGATCGCTTGCATTATTGGACCTATTGGTGTGTGGATTAGATGGATTTTATCCCGATTAAATGGACATGGATTAGGATCAAGAGGTTTGTTGAATTGGATGCGATTTGGAACTCTAACTGCAAATGTCTCTGCTGCTTGTATCATGGCTGCACTTGCTACAACAAAGATATATGTGAGTTTCTAG

Protein sequence

>MsG0380011632.01.T01

MEHDVGVNKLQLHLGASNSVSSEQMSPLLSIEGEDSEDIQQLQEPSKELPKLLDSASYLIHLAVFGILGVLTRYTLDKLFGPSVGHVTSDQTILYLDLPSNMVGSFLMGWFGVVFKEDLSNVSKYLAVALTTGYLGSLTTFSGWNQKMLELSVTGNWLFVVLGFLIETAKGFKWLLIRLNVTSRSEASRAKTKAKVEGFKHHLVVMLVFLLILGLLWGISGVLMIAEFKNGENAYLWIACIIGPIGVWIRWILSRLNGHGLGSRGLLNWMRFGTLTANVSAACIMAALATTKIYVSF*