AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032256.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032256.01.T01 MTR_6g038750 89.677 155 15 1 1 155 1 154 2.34e-80 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032256.01.T01 AT1G71810 51.034 145 66 2 10 154 5 144 3.31e-39 142

Find 53 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAGCTGATGAGATGTTTA+AGG 0.220851 6:-37424396 MsG0680032256.01.T01:intron
GTTCTTCCCTCTTCATAACT+TGG 0.318418 6:+37422080 None:intergenic
TGCAGCGGTGGTGGTGCATT+TGG 0.341770 6:+37424631 None:intergenic
AGTGGCTTATATCTCAGAAT+AGG 0.348507 6:+37422128 None:intergenic
GTTCAAACTGGAATCGCGTT+TGG 0.350909 6:-37424458 MsG0680032256.01.T01:CDS
TTGGAGATGGAGGAGTTAGT+TGG 0.352313 6:+37424695 None:intergenic
ATCGCGTTTGGGAAGTGGTT+TGG 0.352457 6:-37424446 MsG0680032256.01.T01:CDS
GACTCGTTTACGGCAAAGTC+AGG 0.358723 6:-37424590 MsG0680032256.01.T01:CDS
TTGGGAAGTGGTTTGGATTG+AGG 0.367601 6:-37424439 MsG0680032256.01.T01:CDS
GAGGGAAATGAGAGAGAAGT+TGG 0.387401 6:+37424728 None:intergenic
CTTATTCGACCTAAGTGTTT+CGG 0.391053 6:-37424564 MsG0680032256.01.T01:CDS
CACCGGCGATGACTCGTTTA+CGG 0.392321 6:-37424600 MsG0680032256.01.T01:CDS
GTGGCTTATATCTCAGAATA+GGG 0.398144 6:+37422129 None:intergenic
CGACGGCGACGACGGTGGTT+TGG 0.401399 6:+37424668 None:intergenic
ACGACGGTGGTTTGGATAGT+TGG 0.414120 6:+37424676 None:intergenic
TTCTTCCCTCTTCATAACTT+GGG 0.415410 6:+37422081 None:intergenic
CTGGAATCGCGTTTGGGAAG+TGG 0.416715 6:-37424451 MsG0680032256.01.T01:CDS
GGAGAGGGATGCAGCGGTGG+TGG 0.420085 6:+37424622 None:intergenic
TGCAGAGCTAAGGAAGATAT+TGG 0.431754 6:-37422936 MsG0680032256.01.T01:CDS
GCGAGGAGATTGGTTCAAAC+TGG 0.435394 6:-37424470 MsG0680032256.01.T01:CDS
CGACCTAAGTGTTTCGGAAG+CGG 0.442344 6:-37424558 MsG0680032256.01.T01:CDS
TTCAAACTGGAATCGCGTTT+GGG 0.445466 6:-37424457 MsG0680032256.01.T01:CDS
TGGAGATGGAGGAGTTAGTT+GGG 0.448404 6:+37424696 None:intergenic
TTTCCGCTTCCGAAACACTT+AGG 0.470943 6:+37424555 None:intergenic
CGAGTCATCGCCGGTGGAGA+GGG 0.474079 6:+37424607 None:intergenic
ATGATGAAGGTGGTTATAGT+TGG 0.476098 6:+37424827 None:intergenic
GATTGTTGTTGCGAGGAGAT+TGG 0.482806 6:-37424480 MsG0680032256.01.T01:CDS
AATCTCCTCGCAACAACAAT+CGG 0.493348 6:+37424482 None:intergenic
TTGGTGTTGTTGTTGAAATG+AGG 0.494406 6:+37424747 None:intergenic
AGGAAGATATTGGTGGAACT+TGG 0.495469 6:-37422926 MsG0680032256.01.T01:CDS
GGCATATATCAAAATTGCTC+AGG 0.501314 6:-37422293 MsG0680032256.01.T01:CDS
GATATTGGTGGAACTTGGTC+CGG 0.507286 6:-37422921 MsG0680032256.01.T01:intron
ATCTCAGAATAGGGTTCCTA+CGG 0.511099 6:+37422138 None:intergenic
AGGTTAGAGCTGCAGAGCTA+AGG 0.520960 6:-37422946 MsG0680032256.01.T01:CDS
TCAAATGGAATTAGATTCAG+TGG 0.526342 6:+37422110 None:intergenic
GGTGGAGAGGGATGCAGCGG+TGG 0.531227 6:+37424619 None:intergenic
AGCGGTGGTGGTGCATTTGG+CGG 0.541421 6:+37424634 None:intergenic
GTTTGGATAGTTGGAGATGG+AGG 0.556212 6:+37424685 None:intergenic
GTGGTTTGGATAGTTGGAGA+TGG 0.563193 6:+37424682 None:intergenic
TGCCGTAAACGAGTCATCGC+CGG 0.578634 6:+37424598 None:intergenic
ACGAGTCATCGCCGGTGGAG+AGG 0.583190 6:+37424606 None:intergenic
AATGACGACGGCGACGACGG+TGG 0.609014 6:+37424663 None:intergenic
GAAAACCGATTGTTGTTGCG+AGG 0.609141 6:-37424487 MsG0680032256.01.T01:CDS
TCATATGTCAGCGCTTCCGT+AGG 0.625753 6:-37422154 MsG0680032256.01.T01:intron
ACCGCTGCATCCCTCTCCAC+CGG 0.625955 6:-37424617 MsG0680032256.01.T01:CDS
AGAGCTAAGGAAGATATTGG+TGG 0.628817 6:-37422933 MsG0680032256.01.T01:CDS
AATAATGACGACGGCGACGA+CGG 0.634600 6:+37424660 None:intergenic
GCCGGTGGAGAGGGATGCAG+CGG 0.635318 6:+37424616 None:intergenic
CGTAAACGAGTCATCGCCGG+TGG 0.662809 6:+37424601 None:intergenic
TTGGAATGAGATGATGAAGG+TGG 0.666460 6:+37424817 None:intergenic
ACTCGTTTACGGCAAAGTCA+GGG 0.671099 6:-37424589 MsG0680032256.01.T01:CDS
AATTTGGAATGAGATGATGA+AGG 0.700064 6:+37424814 None:intergenic
TGGCGGAGTAATAATGACGA+CGG 0.712785 6:+37424651 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATAAAATAAAATCAAA+AGG + Chr6:37422888-37422907 None:intergenic 10.0%
!!! AAAATATATATTTTAGTTTG+CGG + Chr6:37424522-37424541 None:intergenic 10.0%
!! AACATTTGTAATTAAAAACA+TGG + Chr6:37424826-37424845 None:intergenic 15.0%
!! TACAAATAAATCAAAACTTA+CGG + Chr6:37424613-37424632 None:intergenic 15.0%
!!! AAATATATATTTTAGTTTGC+GGG + Chr6:37424521-37424540 None:intergenic 15.0%
!!! ACATGACATATTTAAAATTT+CGG + Chr6:37424184-37424203 None:intergenic 15.0%
!! GAAAACAACTTACAAATATA+CGG - Chr6:37423718-37423737 MsG0680032256.01.T01:intron 20.0%
!! TCATAAAAATGCTTATGAAT+AGG + Chr6:37423345-37423364 None:intergenic 20.0%
!! TGAATTTGTAACATTTAACT+GGG - Chr6:37424203-37424222 MsG0680032256.01.T01:intron 20.0%
!! TGTTTATCTAAACAACTATT+TGG - Chr6:37423397-37423416 MsG0680032256.01.T01:intron 20.0%
!!! AAAACGTATTTCTGAAATTT+TGG + Chr6:37424231-37424250 None:intergenic 20.0%
!!! ACGAAGTTTTTGAAAAAATT+TGG + Chr6:37422070-37422089 None:intergenic 20.0%
!!! ACTTATTTGAGTTTATATAG+TGG - Chr6:37423424-37423443 MsG0680032256.01.T01:intron 20.0%
!!! TAGGTGTTATTTTATATCTT+AGG - Chr6:37424031-37424050 MsG0680032256.01.T01:intron 20.0%
! AAAAGTTACATGAACCTAAA+AGG + Chr6:37424349-37424368 None:intergenic 25.0%
! AAAGTTACATGAACCTAAAA+GGG + Chr6:37424348-37424367 None:intergenic 25.0%
! AACAAATCATTTCCATCAAA+TGG + Chr6:37423761-37423780 None:intergenic 25.0%
! ATTGAGTTATGGTAATTGAT+AGG - Chr6:37424054-37424073 MsG0680032256.01.T01:intron 25.0%
! GAAGAGATTATGAAAATAAG+CGG + Chr6:37423255-37423274 None:intergenic 25.0%
! GTGAATTTGTAACATTTAAC+TGG - Chr6:37424202-37424221 MsG0680032256.01.T01:intron 25.0%
! TACTGGATTGTGTATATAAT+AGG - Chr6:37424461-37424480 MsG0680032256.01.T01:CDS 25.0%
! TATATCTTAGGATTGAGTTA+TGG - Chr6:37424043-37424062 MsG0680032256.01.T01:intron 25.0%
! TTGAGTTATGGTAATTGATA+GGG - Chr6:37424055-37424074 MsG0680032256.01.T01:intron 25.0%
!! AGTTGCATTTTATAAGGTTT+TGG + Chr6:37422098-37422117 None:intergenic 25.0%
!! GTTGCATTTTATAAGGTTTT+GGG + Chr6:37422097-37422116 None:intergenic 25.0%
!! TAACTTGGGTTTTTATCAAA+TGG + Chr6:37424773-37424792 None:intergenic 25.0%
!! TTATTTTCACTATCCTTGTT+TGG - Chr6:37424376-37424395 MsG0680032256.01.T01:intron 25.0%
!! TTTTCATAATTTCTCCAAGA+TGG - Chr6:37423523-37423542 MsG0680032256.01.T01:intron 25.0%
!!! ATAATAGGTTAGTTTCTTAG+TGG - Chr6:37424476-37424495 MsG0680032256.01.T01:CDS 25.0%
!!! CTATTTCTTTTCTTTGTTTC+TGG - Chr6:37424653-37424672 MsG0680032256.01.T01:CDS 25.0%
!!! GCTGGTTATTTTATAATTGT+TGG - Chr6:37423975-37423994 MsG0680032256.01.T01:intron 25.0%
AAAAACCCAAGTTATGAAGA+GGG - Chr6:37424779-37424798 MsG0680032256.01.T01:five_prime_UTR 30.0%
AAACTCCAATAATACCTGAA+AGG + Chr6:37422671-37422690 None:intergenic 30.0%
AAGCTGTTTATCCAAACATT+GGG - Chr6:37423641-37423660 MsG0680032256.01.T01:intron 30.0%
AAGCTTATGACATGTTCATA+AGG - Chr6:37422594-37422613 MsG0680032256.01.T01:intron 30.0%
AATAAGCGGAAAACAGTTTA+TGG + Chr6:37423241-37423260 None:intergenic 30.0%
AATCCTTACTAAACCAAACA+AGG + Chr6:37424392-37424411 None:intergenic 30.0%
ACCAAGAACATTATACATAC+TGG - Chr6:37424444-37424463 MsG0680032256.01.T01:CDS 30.0%
ATAAAATAACACCTAGTTCG+AGG + Chr6:37424026-37424045 None:intergenic 30.0%
ATGATAAGCACTTATGCAAT+AGG - Chr6:37422941-37422960 MsG0680032256.01.T01:CDS 30.0%
TAAAAACCCAAGTTATGAAG+AGG - Chr6:37424778-37424797 MsG0680032256.01.T01:five_prime_UTR 30.0%
TAAGCTGTTTATCCAAACAT+TGG - Chr6:37423640-37423659 MsG0680032256.01.T01:intron 30.0%
TCAAATGGAATTAGATTCAG+TGG + Chr6:37424758-37424777 None:intergenic 30.0%
TCCAGTATGTATAATGTTCT+TGG + Chr6:37424448-37424467 None:intergenic 30.0%
TCTTAAATTCTCCCAATGTT+TGG + Chr6:37423655-37423674 None:intergenic 30.0%
TGACACTTTATGAGAACTTA+TGG - Chr6:37422796-37422815 MsG0680032256.01.T01:intron 30.0%
TTAGTTGGGATGAAAAAAGA+GGG + Chr6:37422158-37422177 None:intergenic 30.0%
! AATTTGGAATGAGATGATGA+AGG + Chr6:37422054-37422073 None:intergenic 30.0%
! AGAATTTTGTAGCCATTTGA+TGG - Chr6:37423746-37423765 MsG0680032256.01.T01:intron 30.0%
! ATGAGGAGTTGCATTTTATA+AGG + Chr6:37422104-37422123 None:intergenic 30.0%
! TATCCTTGTTTGGTTTAGTA+AGG - Chr6:37424386-37424405 MsG0680032256.01.T01:intron 30.0%
! TCAGTTCTTTTCATTCCAAA+CGG + Chr6:37423870-37423889 None:intergenic 30.0%
!!! AGAAGTGTTTTTCTATAAGC+TGG - Chr6:37423614-37423633 MsG0680032256.01.T01:intron 30.0%
!!! CTTTGATTTTTCGAGTTTTG+TGG - Chr6:37422513-37422532 MsG0680032256.01.T01:intron 30.0%
!!! TTTTCTGCTACTCTAGTTTT+TGG - Chr6:37423073-37423092 MsG0680032256.01.T01:intron 30.0%
AACCTAAAAGGGAATATTGC+AGG + Chr6:37424337-37424356 None:intergenic 35.0%
ACCTAAAAGGGAATATTGCA+GGG + Chr6:37424336-37424355 None:intergenic 35.0%
ACGGAAAATCAAATGTCTGA+AGG + Chr6:37423851-37423870 None:intergenic 35.0%
AGTGGCTTATATCTCAGAAT+AGG + Chr6:37424740-37424759 None:intergenic 35.0%
ATGATGTTCATAAGCTTTCC+AGG - Chr6:37422828-37422847 MsG0680032256.01.T01:intron 35.0%
ATGCAATAGGCTACAAGATA+AGG - Chr6:37422954-37422973 MsG0680032256.01.T01:intron 35.0%
CATTTGTGATTCTTCGTGTA+TGG - Chr6:37424677-37424696 MsG0680032256.01.T01:CDS 35.0%
CTTATTCGACCTAAGTGTTT+CGG - Chr6:37422301-37422320 MsG0680032256.01.T01:intron 35.0%
GACATGTTCATAAGCTCTTT+AGG - Chr6:37423686-37423705 MsG0680032256.01.T01:intron 35.0%
GATGCATACTACTTTATTGC+AGG - Chr6:37424551-37424570 MsG0680032256.01.T01:CDS 35.0%
GGCATATATCAAAATTGCTC+AGG - Chr6:37424572-37424591 MsG0680032256.01.T01:CDS 35.0%
GTGGCTTATATCTCAGAATA+GGG + Chr6:37424739-37424758 None:intergenic 35.0%
GTTAGTTGGGATGAAAAAAG+AGG + Chr6:37422159-37422178 None:intergenic 35.0%
TAACAAATCACTGCTTTCGT+AGG + Chr6:37423812-37423831 None:intergenic 35.0%
TCTGTTGATATGTCAGTTTG+AGG - Chr6:37423020-37423039 MsG0680032256.01.T01:intron 35.0%
TTCTTCCCTCTTCATAACTT+GGG + Chr6:37424787-37424806 None:intergenic 35.0%
! TGACTCACCTTTTTACTGTT+CGG - Chr6:37423891-37423910 MsG0680032256.01.T01:intron 35.0%
! TTCAGCCTTTCAGGTATTAT+TGG - Chr6:37422663-37422682 MsG0680032256.01.T01:intron 35.0%
!! ATGATTTGTTGCTGTTAGCA+TGG - Chr6:37423771-37423790 MsG0680032256.01.T01:intron 35.0%
!! CAGACATTTGATTTTCCGTT+TGG - Chr6:37423852-37423871 MsG0680032256.01.T01:intron 35.0%
!! GTTGTTTTCATAAGCCATCT+TGG + Chr6:37423540-37423559 None:intergenic 35.0%
!! TTGGTGTTGTTGTTGAAATG+AGG + Chr6:37422121-37422140 None:intergenic 35.0%
!!! GCTTTTTTCATAAGCTATCC+TGG + Chr6:37422849-37422868 None:intergenic 35.0%
!!! TAGTTGATTCGTGAGTTTTG+TGG - Chr6:37422699-37422718 MsG0680032256.01.T01:intron 35.0%
!!! TATATTTTAGTTTGCGGGCA+TGG + Chr6:37424516-37424535 None:intergenic 35.0%
!!! TGATTTTTCGAGTTTTGTGG+TGG - Chr6:37422516-37422535 MsG0680032256.01.T01:intron 35.0%
AAAAGGGAATATTGCAGGGA+AGG + Chr6:37424332-37424351 None:intergenic 40.0%
AAATAACCAGCCTGACATAC+CGG + Chr6:37423966-37423985 None:intergenic 40.0%
AACCATGGTGAGGTTCAATT+TGG + Chr6:37424309-37424328 None:intergenic 40.0%
AATCTCCTCGCAACAACAAT+CGG + Chr6:37422386-37422405 None:intergenic 40.0%
AGAGCTAAGGAAGATATTGG+TGG - Chr6:37423932-37423951 MsG0680032256.01.T01:intron 40.0%
AGGAAGATATTGGTGGAACT+TGG - Chr6:37423939-37423958 MsG0680032256.01.T01:intron 40.0%
ATCTCAGAATAGGGTTCCTA+CGG + Chr6:37424730-37424749 None:intergenic 40.0%
ATGTACTCTATCCTCGAACT+AGG - Chr6:37424012-37424031 MsG0680032256.01.T01:intron 40.0%
CTGCAAACCGAACAGTAAAA+AGG + Chr6:37423901-37423920 None:intergenic 40.0%
GTTCTTCCCTCTTCATAACT+TGG + Chr6:37424788-37424807 None:intergenic 40.0%
TACCAAATTGAACCTCACCA+TGG - Chr6:37424304-37424323 MsG0680032256.01.T01:intron 40.0%
TCACAACTCACAAGTGCTTA+TGG + Chr6:37423167-37423186 None:intergenic 40.0%
TCGAGCTGATGAGATGTTTA+AGG - Chr6:37422469-37422488 MsG0680032256.01.T01:intron 40.0%
TGCAGAGCTAAGGAAGATAT+TGG - Chr6:37423929-37423948 MsG0680032256.01.T01:intron 40.0%
TTCAAACTGGAATCGCGTTT+GGG - Chr6:37422408-37422427 MsG0680032256.01.T01:intron 40.0%
TTGAGATGTTTCAGCCTTTC+AGG - Chr6:37422654-37422673 MsG0680032256.01.T01:intron 40.0%
TTGGAATGAGATGATGAAGG+TGG + Chr6:37422051-37422070 None:intergenic 40.0%
! TCCCTGCAATATTCCCTTTT+AGG - Chr6:37424332-37424351 MsG0680032256.01.T01:intron 40.0%
!! ATTTTCACTCGCAGCTTTGA+AGG - Chr6:37424279-37424298 MsG0680032256.01.T01:intron 40.0%
!! CTTTTTACTGTTCGGTTTGC+AGG - Chr6:37423899-37423918 MsG0680032256.01.T01:intron 40.0%
!! TTGATTCGTGAGTTTTGTGG+TGG - Chr6:37422702-37422721 MsG0680032256.01.T01:intron 40.0%
!!! TTTTCACTCGCAGCTTTGAA+GGG - Chr6:37424280-37424299 MsG0680032256.01.T01:intron 40.0%
ACTCGTTTACGGCAAAGTCA+GGG - Chr6:37422276-37422295 MsG0680032256.01.T01:CDS 45.0%
ATATTGCAGGGAAGGAACCA+TGG + Chr6:37424324-37424343 None:intergenic 45.0%
GACACTGTTTGTGAGAACAG+AGG - Chr6:37423185-37423204 MsG0680032256.01.T01:intron 45.0%
GAGGGAAATGAGAGAGAAGT+TGG + Chr6:37422140-37422159 None:intergenic 45.0%
GATATTGGTGGAACTTGGTC+CGG - Chr6:37423944-37423963 MsG0680032256.01.T01:intron 45.0%
GTTCAAACTGGAATCGCGTT+TGG - Chr6:37422407-37422426 MsG0680032256.01.T01:intron 45.0%
GTTTGGATAGTTGGAGATGG+AGG + Chr6:37422183-37422202 None:intergenic 45.0%
TGGAGATGGAGGAGTTAGTT+GGG + Chr6:37422172-37422191 None:intergenic 45.0%
TGGCGGAGTAATAATGACGA+CGG + Chr6:37422217-37422236 None:intergenic 45.0%
TTGGAGATGGAGGAGTTAGT+TGG + Chr6:37422173-37422192 None:intergenic 45.0%
TTTCCGCTTCCGAAACACTT+AGG + Chr6:37422313-37422332 None:intergenic 45.0%
! GAAAACCGATTGTTGTTGCG+AGG - Chr6:37422378-37422397 MsG0680032256.01.T01:intron 45.0%
! GATTGTTGTTGCGAGGAGAT+TGG - Chr6:37422385-37422404 MsG0680032256.01.T01:intron 45.0%
! GTGGTTTGGATAGTTGGAGA+TGG + Chr6:37422186-37422205 None:intergenic 45.0%
! TTGGGAAGTGGTTTGGATTG+AGG - Chr6:37422426-37422445 MsG0680032256.01.T01:intron 45.0%
! TTGTTGCTGTTAGCATGGAG+AGG - Chr6:37423776-37423795 MsG0680032256.01.T01:intron 45.0%
AATAATGACGACGGCGACGA+CGG + Chr6:37422208-37422227 None:intergenic 50.0%
AGGTTAGAGCTGCAGAGCTA+AGG - Chr6:37423919-37423938 MsG0680032256.01.T01:intron 50.0%
ATCGCGTTTGGGAAGTGGTT+TGG - Chr6:37422419-37422438 MsG0680032256.01.T01:intron 50.0%
CGACCTAAGTGTTTCGGAAG+CGG - Chr6:37422307-37422326 MsG0680032256.01.T01:intron 50.0%
GACTCGTTTACGGCAAAGTC+AGG - Chr6:37422275-37422294 MsG0680032256.01.T01:intron 50.0%
TCATATGTCAGCGCTTCCGT+AGG - Chr6:37424711-37424730 MsG0680032256.01.T01:CDS 50.0%
! ACGACGGTGGTTTGGATAGT+TGG + Chr6:37422192-37422211 None:intergenic 50.0%
! GCGAGGAGATTGGTTCAAAC+TGG - Chr6:37422395-37422414 MsG0680032256.01.T01:intron 50.0%
CACCGGCGATGACTCGTTTA+CGG - Chr6:37422265-37422284 MsG0680032256.01.T01:intron 55.0%
CTGGAATCGCGTTTGGGAAG+TGG - Chr6:37422414-37422433 MsG0680032256.01.T01:intron 55.0%
GGAACTTGGTCCGGTATGTC+AGG - Chr6:37423953-37423972 MsG0680032256.01.T01:intron 55.0%
TGCCGTAAACGAGTCATCGC+CGG + Chr6:37422270-37422289 None:intergenic 55.0%
CGTAAACGAGTCATCGCCGG+TGG + Chr6:37422267-37422286 None:intergenic 60.0%
CTTGGTCCGGTATGTCAGGC+TGG - Chr6:37423957-37423976 MsG0680032256.01.T01:intron 60.0%
GCAGGGAAGGAACCATGGTG+AGG + Chr6:37424319-37424338 None:intergenic 60.0%
! AGCGGTGGTGGTGCATTTGG+CGG + Chr6:37422234-37422253 None:intergenic 60.0%
! TGCAGCGGTGGTGGTGCATT+TGG + Chr6:37422237-37422256 None:intergenic 60.0%
AATGACGACGGCGACGACGG+TGG + Chr6:37422205-37422224 None:intergenic 65.0%
ACCGCTGCATCCCTCTCCAC+CGG - Chr6:37422248-37422267 MsG0680032256.01.T01:intron 65.0%
ACGAGTCATCGCCGGTGGAG+AGG + Chr6:37422262-37422281 None:intergenic 65.0%
CGAGTCATCGCCGGTGGAGA+GGG + Chr6:37422261-37422280 None:intergenic 65.0%
CGACGGCGACGACGGTGGTT+TGG + Chr6:37422200-37422219 None:intergenic 70.0%
GCCGGTGGAGAGGGATGCAG+CGG + Chr6:37422252-37422271 None:intergenic 70.0%
GGAGAGGGATGCAGCGGTGG+TGG + Chr6:37422246-37422265 None:intergenic 70.0%
GGTGGAGAGGGATGCAGCGG+TGG + Chr6:37422249-37422268 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 37422040 37424847 37422040 ID=MsG0680032256.01;Name=MsG0680032256.01
Chr6 mRNA 37422040 37424847 37422040 ID=MsG0680032256.01.T01;Parent=MsG0680032256.01;Name=MsG0680032256.01.T01;_AED=0.50;_eAED=0.59;_QI=70|0.66|0.75|1|1|1|4|0|196
Chr6 exon 37422040 37422165 37422040 ID=MsG0680032256.01.T01:exon:20491;Parent=MsG0680032256.01.T01
Chr6 exon 37422276 37422314 37422276 ID=MsG0680032256.01.T01:exon:20490;Parent=MsG0680032256.01.T01
Chr6 exon 37422922 37422966 37422922 ID=MsG0680032256.01.T01:exon:20489;Parent=MsG0680032256.01.T01
Chr6 exon 37424397 37424847 37424397 ID=MsG0680032256.01.T01:exon:20488;Parent=MsG0680032256.01.T01
Chr6 five_prime_UTR 37424778 37424847 37424778 ID=MsG0680032256.01.T01:five_prime_utr;Parent=MsG0680032256.01.T01
Chr6 CDS 37424397 37424777 37424397 ID=MsG0680032256.01.T01:cds;Parent=MsG0680032256.01.T01
Chr6 CDS 37422922 37422966 37422922 ID=MsG0680032256.01.T01:cds;Parent=MsG0680032256.01.T01
Chr6 CDS 37422276 37422314 37422276 ID=MsG0680032256.01.T01:cds;Parent=MsG0680032256.01.T01
Chr6 CDS 37422040 37422165 37422040 ID=MsG0680032256.01.T01:cds;Parent=MsG0680032256.01.T01
Gene Sequence

>MsG0680032256.01.T01

ATGCAACTCCTCATTTCAACAACAACACCAACTTCTCTCTCATTTCCCTCTTTTTTCATCCCAACTAACTCCTCCATCTCCAACTATCCAAACCACCGTCGTCGCCGTCGTCATTATTACTCCGCCAAATGCACCACCACCGCTGCATCCCTCTCCACCGGCGATGACTCGTTTACGGCAAAGTCAGGGTACTTATTCGACCTAAGTGTTTCGGAAGCGGAAACGTTAGAAGATTACAATATATCGAAGATTGCGACTATTTATTATAGAAAACCGATTGTTGTTGCGAGGAGATTGGTTCAAACTGGAATCGCGTTTGGGAAGTGGTTTGGATTGAGGTTTCTTGATAAGCGTTTTGATCGAGCTGATGAGATGTTTAAGGTTAGAGCTGCAGAGCTAAGGAAGATATTGGTGGAACTTGGTCCGGCATATATCAAAATTGCTCAGGCTATATCGTCTCGTTCCCGCTTCCGTAGGAACCCTATTCTGAGATATAAGCCACTGAATCTAATTCCATTTGATAAAAACCCAAGTTATGAAGAGGGAAGAACAAAACTACTGAAGTACCATGTTTTTAATTACAAATGTTAG

Protein sequence

>MsG0680032256.01.T01

MQLLISTTTPTSLSFPSFFIPTNSSISNYPNHRRRRRHYYSAKCTTTAASLSTGDDSFTAKSGYLFDLSVSEAETLEDYNISKIATIYYRKPIVVARRLVQTGIAFGKWFGLRFLDKRFDRADEMFKVRAAELRKILVELGPAYIKIAQAISSRSRFRRNPILRYKPLNLIPFDKNPSYEEGRTKLLKYHVFNYKC*