AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017774.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017774.01.T01 MTR_3g111850 68.902 164 4 3 1 119 1 162 1.96e-64 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017774.01.T01 AT5G42765 61.818 55 20 1 66 119 114 168 2.30e-17 75.9

Find 35 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATTGCGCGGTGGCGG+TGG 0.364743 3:+100530003 None:intergenic
TTGCGCGGTGGCGGTGGCGG+TGG 0.370106 3:+100530009 None:intergenic
GAAAATGTGAGAAGAGGAAA+GGG 0.391368 3:+100529958 None:intergenic
AAATTGCGCGGTGGCGGTGG+CGG 0.397461 3:+100530006 None:intergenic
ATGCACAGGTGTGCACATTT+CGG 0.409608 3:-100528991 MsG0380017774.01.T01:intron
AGCAGATCAGATCTGCTGCC+AGG 0.420810 3:-100529590 MsG0380017774.01.T01:CDS
ATCCTCTGGGACACAATCCC+TGG 0.420882 3:+100529572 None:intergenic
GAAAGGGGAAGGTTACGTTT+TGG 0.426235 3:+100529974 None:intergenic
CCTCAACTCCGGTGTTAGCT+TGG 0.430121 3:+100529529 None:intergenic
AGCCTCCTTGCTTGGAAAGA+AGG 0.453221 3:-100528951 MsG0380017774.01.T01:CDS
ACGAAAGAATTCCTATCCTC+TGG 0.460313 3:+100529558 None:intergenic
AAGAATGCAGCCTCCTTGCT+TGG 0.468358 3:-100528959 MsG0380017774.01.T01:CDS
GAGGGAAAATTGCGCGGTGG+CGG 0.481339 3:+100530000 None:intergenic
CAAATGTCAATGGCGGAGGC+AGG 0.495021 3:+100529890 None:intergenic
GCTGCTGGTAACGGCATTGT+TGG 0.509788 3:+100530061 None:intergenic
AGAAAATGTGAGAAGAGGAA+AGG 0.523134 3:+100529957 None:intergenic
CTTACAGATGCAAATGTCAA+TGG 0.524801 3:+100529880 None:intergenic
GAAACTGTAGCTGCTGGTAA+CGG 0.528950 3:+100530052 None:intergenic
AGGATCCTTCTTTCCAAGCA+AGG 0.532366 3:+100528946 None:intergenic
CCAAGCTAACACCGGAGTTG+AGG 0.540940 3:-100529529 MsG0380017774.01.T01:intron
GCAGATCAGATCTGCTGCCA+GGG 0.550013 3:-100529589 MsG0380017774.01.T01:CDS
GGGATTGTGTCCCAGAGGAT+AGG 0.557429 3:-100529569 MsG0380017774.01.T01:CDS
CGAAAGAATTCCTATCCTCT+GGG 0.559179 3:+100529559 None:intergenic
AGAGCAGAAACTGTAGCTGC+TGG 0.561845 3:+100530046 None:intergenic
GCGAGAGAAAATGTGAGAAG+AGG 0.571071 3:+100529952 None:intergenic
GATGCAAATGTCAATGGCGG+AGG 0.585232 3:+100529886 None:intergenic
TGTGAGAAGAGGAAAGGGGA+AGG 0.601169 3:+100529963 None:intergenic
GTAGCTTTCCAAGCTAACAC+CGG 0.624252 3:-100529537 MsG0380017774.01.T01:CDS
AAAATGTGAGAAGAGGAAAG+GGG 0.629256 3:+100529959 None:intergenic
ACAAAGACAAACCTCAACTC+CGG 0.639797 3:+100529518 None:intergenic
ATCCTTCTTTCCAAGCAAGG+AGG 0.665711 3:+100528949 None:intergenic
TGGAGGGAGGGAAAATTGCG+CGG 0.683829 3:+100529994 None:intergenic
ACAGATGCAAATGTCAATGG+CGG 0.686494 3:+100529883 None:intergenic
TGCCAGGGATTGTGTCCCAG+AGG 0.697985 3:-100529574 MsG0380017774.01.T01:CDS
AGGGAGGGAAAATTGCGCGG+TGG 0.737001 3:+100529997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAGTTTATATTTAGA+AGG - Chr3:100528363-100528382 MsG0380017774.01.T01:intron 10.0%
!! AATATAGTTTATATTTAGAA+GGG - Chr3:100528364-100528383 MsG0380017774.01.T01:intron 10.0%
!! ATACAATAATATAGAAAAAG+TGG + Chr3:100527558-100527577 None:intergenic 15.0%
!! TTATTTATGATTATCATTTC+TGG - Chr3:100529117-100529136 MsG0380017774.01.T01:intron 15.0%
!!! AATATTTTTTTTTTATGCAC+AGG - Chr3:100527215-100527234 MsG0380017774.01.T01:intron 15.0%
!!! AGAGAATTTTAAAAATTAGA+AGG + Chr3:100529428-100529447 None:intergenic 15.0%
!!! CAATCAATTTTTTTATTTTC+AGG - Chr3:100529180-100529199 MsG0380017774.01.T01:intron 15.0%
!!! CTAATTTTTAAAATTCTCTT+TGG - Chr3:100529429-100529448 MsG0380017774.01.T01:intron 15.0%
!!! TATATCAATAGAATTGTTTT+TGG - Chr3:100527530-100527549 MsG0380017774.01.T01:intron 15.0%
!! AAGAGTAGAAATGATTTAAT+TGG + Chr3:100528564-100528583 None:intergenic 20.0%
!! AATAAAAAAATTGATTGCAG+AGG + Chr3:100529177-100529196 None:intergenic 20.0%
!! ATATAAGGAGAAAATTTAGA+AGG - Chr3:100527988-100528007 MsG0380017774.01.T01:intron 20.0%
!! ATCAAAGGATATTAAAAAGA+GGG + Chr3:100528811-100528830 None:intergenic 20.0%
!! CTATTCTATAGATTAAACAT+TGG - Chr3:100528688-100528707 MsG0380017774.01.T01:intron 20.0%
!! TATAAGGAGAAAATTTAGAA+GGG - Chr3:100527989-100528008 MsG0380017774.01.T01:intron 20.0%
!! TGTTATCTATTAGACTTAAT+GGG - Chr3:100527116-100527135 MsG0380017774.01.T01:intron 20.0%
!! TTCACTTCAAAAAGAAATTT+CGG + Chr3:100528101-100528120 None:intergenic 20.0%
!! TTGTTATCTATTAGACTTAA+TGG - Chr3:100527115-100527134 MsG0380017774.01.T01:intron 20.0%
!! TTTAATGTCAAAAATCTTGA+TGG - Chr3:100527743-100527762 MsG0380017774.01.T01:intron 20.0%
!!! AAAACTTTGAAGATGAATAA+AGG + Chr3:100529090-100529109 None:intergenic 20.0%
!!! AAACTTTGAAGATGAATAAA+GGG + Chr3:100529089-100529108 None:intergenic 20.0%
!!! AAGAAAGTTACATTTTTTAG+AGG - Chr3:100530084-100530103 MsG0380017774.01.T01:five_prime_UTR 20.0%
!!! ACATGTTTTCATATCTTATT+AGG - Chr3:100526535-100526554 MsG0380017774.01.T01:intron 20.0%
!!! ATTTCTAATTTGTTCTTTGT+TGG - Chr3:100529887-100529906 MsG0380017774.01.T01:CDS 20.0%
!!! ATTTTCTTTATGCTATCATT+TGG - Chr3:100529026-100529045 MsG0380017774.01.T01:intron 20.0%
!!! CATGTTTTCATATCTTATTA+GGG - Chr3:100526536-100526555 MsG0380017774.01.T01:intron 20.0%
!!! TTTCTAATTTGTTCTTTGTT+GGG - Chr3:100529888-100529907 MsG0380017774.01.T01:CDS 20.0%
! AAAAGTTAGAGATAAGAATC+AGG + Chr3:100529401-100529420 None:intergenic 25.0%
! AAGGGAAGTAAACAAAAAAA+AGG + Chr3:100528720-100528739 None:intergenic 25.0%
! AATCAATGTCTTGCTAATTA+GGG - Chr3:100526787-100526806 MsG0380017774.01.T01:intron 25.0%
! AGAACAAAAGTTAATATGCT+CGG + Chr3:100528260-100528279 None:intergenic 25.0%
! AGTAAAGAACTTAAAGAATG+GGG + Chr3:100529965-100529984 None:intergenic 25.0%
! ATGATAAAGAGAATGAAGTT+GGG + Chr3:100527783-100527802 None:intergenic 25.0%
! ATTAAATGCATAGAAGACAT+AGG + Chr3:100529804-100529823 None:intergenic 25.0%
! CAGTAAAGAACTTAAAGAAT+GGG + Chr3:100529966-100529985 None:intergenic 25.0%
! CATCAAAGGATATTAAAAAG+AGG + Chr3:100528812-100528831 None:intergenic 25.0%
! GAAATATTCAGTGTAAAGAA+AGG + Chr3:100527402-100527421 None:intergenic 25.0%
! GAATGACATAATAGGATAAT+TGG - Chr3:100526813-100526832 MsG0380017774.01.T01:intron 25.0%
! GTTATCTATTAGACTTAATG+GGG - Chr3:100527117-100527136 MsG0380017774.01.T01:intron 25.0%
! TATGATAAAGAGAATGAAGT+TGG + Chr3:100527784-100527803 None:intergenic 25.0%
! TCAGTAAAGAACTTAAAGAA+TGG + Chr3:100529967-100529986 None:intergenic 25.0%
! TGATTAAACTGAGTTTGATT+TGG - Chr3:100529989-100530008 MsG0380017774.01.T01:CDS 25.0%
! TGTATTAATACTTCTTCATC+TGG - Chr3:100529639-100529658 MsG0380017774.01.T01:intron 25.0%
! TTAATGTCAAAAACTCTTGA+TGG - Chr3:100528281-100528300 MsG0380017774.01.T01:intron 25.0%
! TTAGCACATAGGAATTTAAA+GGG + Chr3:100528738-100528757 None:intergenic 25.0%
! TTATCTACCTTTCAATTGTT+TGG + Chr3:100527026-100527045 None:intergenic 25.0%
! TTCTCTTTACCAATATGATT+AGG - Chr3:100528327-100528346 MsG0380017774.01.T01:intron 25.0%
! TTCTCTTTATCATATGATGT+AGG - Chr3:100527790-100527809 MsG0380017774.01.T01:intron 25.0%
!! AGTCATTCATTTGATAATCT+CGG + Chr3:100529152-100529171 None:intergenic 25.0%
!!! ATAGTTCTTGTATTTTGAGA+TGG + Chr3:100528539-100528558 None:intergenic 25.0%
!!! GATGGACTATTAACTATAAT+AGG + Chr3:100528521-100528540 None:intergenic 25.0%
!!! TAATCAGTTTTATCTACACT+TGG + Chr3:100528035-100528054 None:intergenic 25.0%
!!! TTCTAATTTGTTCTTTGTTG+GGG - Chr3:100529889-100529908 MsG0380017774.01.T01:CDS 25.0%
!!! TTGAAATGAGTTTTATGCAA+GGG + Chr3:100529920-100529939 None:intergenic 25.0%
!!! TTTCTTGTTTTGTTTCTTCT+AGG - Chr3:100529863-100529882 MsG0380017774.01.T01:intron 25.0%
!!! TTTGAAATGAGTTTTATGCA+AGG + Chr3:100529921-100529940 None:intergenic 25.0%
AAACTATATTTGACCTAGCT+TGG + Chr3:100528354-100528373 None:intergenic 30.0%
AACCATACCAAACAATTGAA+AGG - Chr3:100527016-100527035 MsG0380017774.01.T01:intron 30.0%
ACAAATTTGAGCAAGGAATT+AGG - Chr3:100529246-100529265 MsG0380017774.01.T01:intron 30.0%
ACAATGATAATTAGTGAGAC+CGG - Chr3:100528472-100528491 MsG0380017774.01.T01:intron 30.0%
AGTGTAAAGAAAGGATTTGA+TGG + Chr3:100527393-100527412 None:intergenic 30.0%
ATAAAACTGATTAGAGCATG+TGG - Chr3:100528433-100528452 MsG0380017774.01.T01:intron 30.0%
ATAATAGTGTCCAGGATAAT+TGG - Chr3:100528977-100528996 MsG0380017774.01.T01:CDS 30.0%
ATACTTGCAAGCTCATAATA+CGG - Chr3:100526877-100526896 MsG0380017774.01.T01:intron 30.0%
ATAGAGCAGCATATATACAT+AGG + Chr3:100528132-100528151 None:intergenic 30.0%
ATGAAACGAGTGAAATGAAA+TGG - Chr3:100527951-100527970 MsG0380017774.01.T01:intron 30.0%
ATGATCTGCATATGAGAATA+TGG + Chr3:100528890-100528909 None:intergenic 30.0%
ATTGGTAAAGAGAATGAAGT+GGG + Chr3:100528321-100528340 None:intergenic 30.0%
CAAATTTGAGCAAGGAATTA+GGG - Chr3:100529247-100529266 MsG0380017774.01.T01:intron 30.0%
CAATCAATGTCTTGCTAATT+AGG - Chr3:100526786-100526805 MsG0380017774.01.T01:intron 30.0%
GAAACCAAAGTTAATATGCT+CGG + Chr3:100527722-100527741 None:intergenic 30.0%
GGATATTAAAAAGAGGGAAA+AGG + Chr3:100528805-100528824 None:intergenic 30.0%
GTTAGCACATAGGAATTTAA+AGG + Chr3:100528739-100528758 None:intergenic 30.0%
TAAGATTATCTAGCAAAGCT+CGG + Chr3:100527312-100527331 None:intergenic 30.0%
TAATAGTGTCCAGGATAATT+GGG - Chr3:100528978-100528997 MsG0380017774.01.T01:CDS 30.0%
TACCTTTCAATTGTTTGGTA+TGG + Chr3:100527021-100527040 None:intergenic 30.0%
TAGGGTTTGAATGACATAAT+AGG - Chr3:100526805-100526824 MsG0380017774.01.T01:intron 30.0%
TATCATATGATGTAGGACAA+AGG - Chr3:100527797-100527816 MsG0380017774.01.T01:intron 30.0%
TATTGGTAAAGAGAATGAAG+TGG + Chr3:100528322-100528341 None:intergenic 30.0%
TCACTAATTATCATTGTGGA+AGG + Chr3:100528469-100528488 None:intergenic 30.0%
TCTCAAATAGTGAAGATACT+TGG + Chr3:100527447-100527466 None:intergenic 30.0%
TGATCTGCATATGAGAATAT+GGG + Chr3:100528889-100528908 None:intergenic 30.0%
TTATTTACAGTCAGATTTCG+AGG + Chr3:100529277-100529296 None:intergenic 30.0%
TTCACCTTCAAAAGAAATTC+CGG + Chr3:100528494-100528513 None:intergenic 30.0%
! ATGTCACGAAATTTGGTAAT+TGG + Chr3:100528847-100528866 None:intergenic 30.0%
!! CTAACATTCTTTTGGGAAAA+GGG + Chr3:100527152-100527171 None:intergenic 30.0%
!! TAACATTCTTTTGGGAAAAG+GGG + Chr3:100527151-100527170 None:intergenic 30.0%
!! TCAGTTTTATCTAAGAGAAC+AGG + Chr3:100528423-100528442 None:intergenic 30.0%
!!! TATTTTTTTAGGAGAGCGAA+TGG - Chr3:100526937-100526956 MsG0380017774.01.T01:intron 30.0%
!!! TTCATTATTTTTAGTCCCTG+TGG - Chr3:100527419-100527438 MsG0380017774.01.T01:intron 30.0%
AAAAAGAGGGAAAAGGCAAA+GGG + Chr3:100528798-100528817 None:intergenic 35.0%
AAAATGTGAGAAGAGGAAAG+GGG + Chr3:100526264-100526283 None:intergenic 35.0%
AAACCAACATGAACTTGCAT+CGG - Chr3:100528937-100528956 MsG0380017774.01.T01:intron 35.0%
AAGAACTTAAAGAATGGGGT+TGG + Chr3:100529961-100529980 None:intergenic 35.0%
AATAATGCCAATCGTCAGTT+CGG + Chr3:100529611-100529630 None:intergenic 35.0%
AATACACGAAGTTAGCACAT+AGG + Chr3:100528749-100528768 None:intergenic 35.0%
AATAGTGTCCAGGATAATTG+GGG - Chr3:100528979-100528998 MsG0380017774.01.T01:CDS 35.0%
AATATGATTAGGACCAAGCT+AGG - Chr3:100528338-100528357 MsG0380017774.01.T01:intron 35.0%
ACGAGTGAAATGAAATGGTA+AGG - Chr3:100527956-100527975 MsG0380017774.01.T01:intron 35.0%
AGAAAATGTGAGAAGAGGAA+AGG + Chr3:100526266-100526285 None:intergenic 35.0%
AGCAAGTAGAAAACTTAACC+AGG + Chr3:100529738-100529757 None:intergenic 35.0%
ATAAAACTGATTAGAGCACG+TGG - Chr3:100528042-100528061 MsG0380017774.01.T01:intron 35.0%
ATATGATGTAGGACAAAGGT+AGG - Chr3:100527801-100527820 MsG0380017774.01.T01:intron 35.0%
ATTCTCAGAATAGTTTCTCC+AGG - Chr3:100529822-100529841 MsG0380017774.01.T01:intron 35.0%
CAAAATAGCAGATGCTGTAT+CGG - Chr3:100529205-100529224 MsG0380017774.01.T01:intron 35.0%
CCAAATTTCGTGACATATGA+CGG - Chr3:100528851-100528870 MsG0380017774.01.T01:intron 35.0%
CGAATTATCACAACCATGAA+GGG + Chr3:100528609-100528628 None:intergenic 35.0%
CTTACAGATGCAAATGTCAA+TGG + Chr3:100526343-100526362 None:intergenic 35.0%
GAAAATGTGAGAAGAGGAAA+GGG + Chr3:100526265-100526284 None:intergenic 35.0%
GATAAAGATAAACAGAGCGA+AGG + Chr3:100526465-100526484 None:intergenic 35.0%
GCAAGTAGAAAACTTAACCA+GGG + Chr3:100529737-100529756 None:intergenic 35.0%
GGTCTCACTAATTATCATTG+TGG + Chr3:100528473-100528492 None:intergenic 35.0%
GTAAGGAGTGGCTATATATA+AGG - Chr3:100527973-100527992 MsG0380017774.01.T01:intron 35.0%
GTACTAAATTGAACCCTTCA+TGG - Chr3:100528593-100528612 MsG0380017774.01.T01:intron 35.0%
TAAAAAGAGGGAAAAGGCAA+AGG + Chr3:100528799-100528818 None:intergenic 35.0%
TAACACAAGATACAACACGT+GGG - Chr3:100527860-100527879 MsG0380017774.01.T01:intron 35.0%
TAGCTTGGTCCTAATCATAT+TGG + Chr3:100528339-100528358 None:intergenic 35.0%
TATCCTGGACACTATTATTG+AGG + Chr3:100528975-100528994 None:intergenic 35.0%
TCCACTTCAAAAAGTTGAAC+AGG + Chr3:100529300-100529319 None:intergenic 35.0%
TGAAATGAAATGGTAAGGAG+TGG - Chr3:100527961-100527980 MsG0380017774.01.T01:intron 35.0%
TGCAAAGCAAATGATTGAAC+TGG - Chr3:100527471-100527490 MsG0380017774.01.T01:intron 35.0%
TGGACACTAATTAATGCAGT+AGG + Chr3:100527373-100527392 None:intergenic 35.0%
TTAACACAAGATACAACACG+TGG - Chr3:100527859-100527878 MsG0380017774.01.T01:intron 35.0%
! ATCAAAATATGCTTTTGCCC+TGG - Chr3:100529717-100529736 MsG0380017774.01.T01:intron 35.0%
! CACTGAGCTAACATTCTTTT+GGG + Chr3:100527159-100527178 None:intergenic 35.0%
! CATTTGATAATCTCGGTTAG+AGG + Chr3:100529145-100529164 None:intergenic 35.0%
! CATTTTCTCTCTTCTTCTCT+TGG + Chr3:100527934-100527953 None:intergenic 35.0%
! TGTTCTTTTAGCCAATCCTT+TGG + Chr3:100526392-100526411 None:intergenic 35.0%
!! ACCTGTTCAACTTTTTGAAG+TGG - Chr3:100529296-100529315 MsG0380017774.01.T01:intron 35.0%
!! ACGTGTTTTTGAACTGGTTT+GGG - Chr3:100530028-100530047 MsG0380017774.01.T01:CDS 35.0%
!! GCTAACATTCTTTTGGGAAA+AGG + Chr3:100527153-100527172 None:intergenic 35.0%
!! TTGGTAATTGGCATGCATTT+TGG + Chr3:100528835-100528854 None:intergenic 35.0%
!! TTTTGTTACCGTTTTTCAGC+AGG - Chr3:100526365-100526384 MsG0380017774.01.T01:intron 35.0%
!!! GATTTGGTTTTCTATCAGAG+TGG - Chr3:100530005-100530024 MsG0380017774.01.T01:CDS 35.0%
!!! GTTCAACTTTTTGAAGTGGA+AGG - Chr3:100529300-100529319 MsG0380017774.01.T01:intron 35.0%
AACACATAGATGCTGGAAAG+TGG + Chr3:100527342-100527361 None:intergenic 40.0%
ACAAAGACAAACCTCAACTC+CGG + Chr3:100526705-100526724 None:intergenic 40.0%
ACAGATGCAAATGTCAATGG+CGG + Chr3:100526340-100526359 None:intergenic 40.0%
ACGAAAGAATTCCTATCCTC+TGG + Chr3:100526665-100526684 None:intergenic 40.0%
AGAGAACAGGACAAAACACT+TGG + Chr3:100528410-100528429 None:intergenic 40.0%
ATTAGAGCATGTGGTAACAG+TGG - Chr3:100528442-100528461 MsG0380017774.01.T01:intron 40.0%
CACTAATTAATGCAGTAGGC+AGG + Chr3:100527369-100527388 None:intergenic 40.0%
CAGGATAATTGGGGTATACT+AGG - Chr3:100528988-100529007 MsG0380017774.01.T01:intron 40.0%
CATGCCGAGCATATTAACTT+TGG - Chr3:100527715-100527734 MsG0380017774.01.T01:intron 40.0%
CCGTCATATGTCACGAAATT+TGG + Chr3:100528854-100528873 None:intergenic 40.0%
CGAAAGAATTCCTATCCTCT+GGG + Chr3:100526664-100526683 None:intergenic 40.0%
CGCAAAAAGGACAACAATAC+AGG + Chr3:100529063-100529082 None:intergenic 40.0%
CGGATGAGTGATTCGTTATA+TGG - Chr3:100526897-100526916 MsG0380017774.01.T01:intron 40.0%
CGGTCTCACTATTATCATTG+TGG + Chr3:100528081-100528100 None:intergenic 40.0%
CTAGTATACCCCAATTATCC+TGG + Chr3:100528990-100529009 None:intergenic 40.0%
GAATAAAGGGAGACGCAAAA+AGG + Chr3:100529076-100529095 None:intergenic 40.0%
GCATATGAGAATATGGGAAC+AGG + Chr3:100528883-100528902 None:intergenic 40.0%
GCGAATTATCACAACCATGA+AGG + Chr3:100528610-100528629 None:intergenic 40.0%
GTCATTTAAGTACGTGCTTC+TGG - Chr3:100529337-100529356 MsG0380017774.01.T01:intron 40.0%
TCATGGTTGTGATAATTCGC+TGG - Chr3:100528610-100528629 MsG0380017774.01.T01:intron 40.0%
TCTCCTCAATAATAGTGTCC+AGG - Chr3:100528969-100528988 MsG0380017774.01.T01:CDS 40.0%
TCTCTCGACAAATTTGAGCA+AGG - Chr3:100529239-100529258 MsG0380017774.01.T01:intron 40.0%
TCTTCATCTGGATAATCCTC+TGG - Chr3:100529651-100529670 MsG0380017774.01.T01:intron 40.0%
TGAAGATACTTGGAACCACA+GGG + Chr3:100527437-100527456 None:intergenic 40.0%
TGATATTCAGCTAAGTGACG+TGG + Chr3:100529558-100529577 None:intergenic 40.0%
TTAGAGCATGTGGTAACAGT+GGG - Chr3:100528443-100528462 MsG0380017774.01.T01:intron 40.0%
TTATCATTGTGGAATGCCAC+TGG + Chr3:100528070-100528089 None:intergenic 40.0%
TTATCTTCTCCAGTAGAAGG+AGG - Chr3:100527883-100527902 MsG0380017774.01.T01:intron 40.0%
! GAGACCGGAATTTCTTTTGA+AGG - Chr3:100528487-100528506 MsG0380017774.01.T01:intron 40.0%
! GCACTGAGCTAACATTCTTT+TGG + Chr3:100527160-100527179 None:intergenic 40.0%
!! GACGTGTTTTTGAACTGGTT+TGG - Chr3:100530027-100530046 MsG0380017774.01.T01:CDS 40.0%
!! TTTCCAGCATCTAGTTCTTC+AGG - Chr3:100528220-100528239 MsG0380017774.01.T01:intron 40.0%
!!! TGTTTTTGAACTGGTTTGGG+TGG - Chr3:100530031-100530050 MsG0380017774.01.T01:CDS 40.0%
AAAAATTGCGCTCTCACCAG+AGG + Chr3:100529670-100529689 None:intergenic 45.0%
AAGCTCGGCTTCTAACTTAC+AGG + Chr3:100527297-100527316 None:intergenic 45.0%
AAGTGAGGTGGCTCAATTCA+GGG + Chr3:100529587-100529606 None:intergenic 45.0%
AATCCCTACCCTGAATTGAG+TGG - Chr3:100527044-100527063 MsG0380017774.01.T01:intron 45.0%
AGATCATTCGCCTCTATCAG+TGG - Chr3:100528903-100528922 MsG0380017774.01.T01:intron 45.0%
AGGATCCTTCTTTCCAAGCA+AGG + Chr3:100527277-100527296 None:intergenic 45.0%
AGGCTACAACACATAGATGC+TGG + Chr3:100527349-100527368 None:intergenic 45.0%
ATAAGTAGCACAGTTTCCGC+TGG + Chr3:100526585-100526604 None:intergenic 45.0%
ATCAGTCCCCACTCAATTCA+GGG + Chr3:100527055-100527074 None:intergenic 45.0%
ATCCCTACCCTGAATTGAGT+GGG - Chr3:100527045-100527064 MsG0380017774.01.T01:intron 45.0%
ATCCTTCTTTCCAAGCAAGG+AGG + Chr3:100527274-100527293 None:intergenic 45.0%
ATGCACAGGTGTGCACATTT+CGG - Chr3:100527229-100527248 MsG0380017774.01.T01:intron 45.0%
ATTTGCCAGACCACTGATAG+AGG + Chr3:100528916-100528935 None:intergenic 45.0%
CAACATGAACTTGCATCGGA+TGG - Chr3:100528941-100528960 MsG0380017774.01.T01:intron 45.0%
CATCCGATGCAAGTTCATGT+TGG + Chr3:100528943-100528962 None:intergenic 45.0%
CCTTTGGTCCTGCTGAAAAA+CGG + Chr3:100526376-100526395 None:intergenic 45.0%
CGACAGGAGCAAGTAGAAAA+TGG + Chr3:100526427-100526446 None:intergenic 45.0%
GAAACTGTAGCTGCTGGTAA+CGG + Chr3:100526171-100526190 None:intergenic 45.0%
GCGAGAGAAAATGTGAGAAG+AGG + Chr3:100526271-100526290 None:intergenic 45.0%
GGGTTATCTTCTCCAGTAGA+AGG - Chr3:100527880-100527899 MsG0380017774.01.T01:intron 45.0%
GTAGCTTTCCAAGCTAACAC+CGG - Chr3:100526683-100526702 MsG0380017774.01.T01:intron 45.0%
GTGAAGATACTTGGAACCAC+AGG + Chr3:100527438-100527457 None:intergenic 45.0%
TAAGTAGCACAGTTTCCGCT+GGG + Chr3:100526584-100526603 None:intergenic 45.0%
TATCAGTCCCCACTCAATTC+AGG + Chr3:100527056-100527075 None:intergenic 45.0%
TTAGACGAGAGAAGCTGAGA+AGG - Chr3:100526974-100526993 MsG0380017774.01.T01:intron 45.0%
TTGTGACTTCCTCCTTCTAC+TGG + Chr3:100527895-100527914 None:intergenic 45.0%
TTTCAGCAGGACCAAAGGAT+TGG - Chr3:100526378-100526397 MsG0380017774.01.T01:intron 45.0%
! GAAAGGGGAAGGTTACGTTT+TGG + Chr3:100526249-100526268 None:intergenic 45.0%
! GGGAGTGCAGATAATGCTTT+AGG + Chr3:100528778-100528797 None:intergenic 45.0%
!! GAGTGGACGTGTTTTTGAAC+TGG - Chr3:100530022-100530041 MsG0380017774.01.T01:CDS 45.0%
!! GGCATGCATTTTGGCATCAA+AGG + Chr3:100528826-100528845 None:intergenic 45.0%
!! GTTTCCAGCATCTAGTTCTC+AGG - Chr3:100527680-100527699 MsG0380017774.01.T01:intron 45.0%
!!! AAGGTTACGTTTTGGAGGGA+GGG + Chr3:100526241-100526260 None:intergenic 45.0%
!!! TTATCATTATTTATTTTTTT+AGG - Chr3:100526926-100526945 MsG0380017774.01.T01:intron 5.0%
AAGAATGCAGCCTCCTTGCT+TGG - Chr3:100527261-100527280 MsG0380017774.01.T01:intron 50.0%
AAGTAGCACAGTTTCCGCTG+GGG + Chr3:100526583-100526602 None:intergenic 50.0%
AAGTGCCACCTTCCACGTTA+GGG + Chr3:100529463-100529482 None:intergenic 50.0%
AATCGTCAGTTCGGCAAGTG+AGG + Chr3:100529602-100529621 None:intergenic 50.0%
AGAGCAGAAACTGTAGCTGC+TGG + Chr3:100526177-100526196 None:intergenic 50.0%
AGCCTCCTTGCTTGGAAAGA+AGG - Chr3:100527269-100527288 MsG0380017774.01.T01:intron 50.0%
ATTAGAGCACGTGGTACCAG+TGG - Chr3:100528051-100528070 MsG0380017774.01.T01:intron 50.0%
ATTCGCCTCTATCAGTGGTC+TGG - Chr3:100528908-100528927 MsG0380017774.01.T01:intron 50.0%
CAAGTGAGGTGGCTCAATTC+AGG + Chr3:100529588-100529607 None:intergenic 50.0%
CAATACTGCCCTAACGTGGA+AGG - Chr3:100529452-100529471 MsG0380017774.01.T01:intron 50.0%
CGAGAGAAGCTGAGAAGGTT+TGG - Chr3:100526979-100526998 MsG0380017774.01.T01:intron 50.0%
CTCACCTGAGAACTAGATGC+TGG + Chr3:100527687-100527706 None:intergenic 50.0%
GATGCAAATGTCAATGGCGG+AGG + Chr3:100526337-100526356 None:intergenic 50.0%
GCACCTGAAGAACTAGATGC+TGG + Chr3:100528226-100528245 None:intergenic 50.0%
TCACTTGCCGAACTGACGAT+TGG - Chr3:100529601-100529620 MsG0380017774.01.T01:CDS 50.0%
TCCCCACTCAATTCAGGGTA+GGG + Chr3:100527050-100527069 None:intergenic 50.0%
TCCCTACCCTGAATTGAGTG+GGG - Chr3:100527046-100527065 MsG0380017774.01.T01:intron 50.0%
TGTGAGAAGAGGAAAGGGGA+AGG + Chr3:100526260-100526279 None:intergenic 50.0%
TTGGCAATACTGCCCTAACG+TGG - Chr3:100529448-100529467 MsG0380017774.01.T01:intron 50.0%
! AGGGGAAGGTTACGTTTTGG+AGG + Chr3:100526246-100526265 None:intergenic 50.0%
! GTTTCGTTCCTTTTCCCCAG+CGG - Chr3:100526566-100526585 MsG0380017774.01.T01:intron 50.0%
! TGCAAAGAGCATGCATCTCC+TGG + Chr3:100529843-100529862 None:intergenic 50.0%
!! CCGTTTTTCAGCAGGACCAA+AGG - Chr3:100526373-100526392 MsG0380017774.01.T01:intron 50.0%
!! GGGGAAGGTTACGTTTTGGA+GGG + Chr3:100526245-100526264 None:intergenic 50.0%
!!! GAAGGTTACGTTTTGGAGGG+AGG + Chr3:100526242-100526261 None:intergenic 50.0%
AGCAGATCAGATCTGCTGCC+AGG - Chr3:100526630-100526649 MsG0380017774.01.T01:intron 55.0%
CAAGTGCCACCTTCCACGTT+AGG + Chr3:100529464-100529483 None:intergenic 55.0%
CACAGTTTCCGCTGGGGAAA+AGG + Chr3:100526577-100526596 None:intergenic 55.0%
CACTTGGCCACTTGTCGTAG+AGG + Chr3:100528394-100528413 None:intergenic 55.0%
CAGAGCGAAGGCTTTCACGA+AGG + Chr3:100526453-100526472 None:intergenic 55.0%
CCAAGCTAACACCGGAGTTG+AGG - Chr3:100526691-100526710 MsG0380017774.01.T01:intron 55.0%
CTAACGTGGAAGGTGGCACT+TGG - Chr3:100529462-100529481 MsG0380017774.01.T01:intron 55.0%
GCAGATCAGATCTGCTGCCA+GGG - Chr3:100526631-100526650 MsG0380017774.01.T01:intron 55.0%
GGGATTGTGTCCCAGAGGAT+AGG - Chr3:100526651-100526670 MsG0380017774.01.T01:intron 55.0%
GTCCCCACTCAATTCAGGGT+AGG + Chr3:100527051-100527070 None:intergenic 55.0%
TACTGCCCTAACGTGGAAGG+TGG - Chr3:100529455-100529474 MsG0380017774.01.T01:intron 55.0%
TGGAGGGAGGGAAAATTGCG+CGG + Chr3:100526229-100526248 None:intergenic 55.0%
! CAAATGTCAATGGCGGAGGC+AGG + Chr3:100526333-100526352 None:intergenic 55.0%
! CCTCAACTCCGGTGTTAGCT+TGG + Chr3:100526694-100526713 None:intergenic 55.0%
!! ATCCTCTGGGACACAATCCC+TGG + Chr3:100526651-100526670 None:intergenic 55.0%
!! GCTGCTGGTAACGGCATTGT+TGG + Chr3:100526162-100526181 None:intergenic 55.0%
!! GCTTTCACGAAGGCATCGAC+AGG + Chr3:100526443-100526462 None:intergenic 55.0%
AGGGAGGGAAAATTGCGCGG+TGG + Chr3:100526226-100526245 None:intergenic 60.0%
CACTTGGCCACTTGTCGCAG+AGG + Chr3:100528019-100528038 None:intergenic 60.0%
CGTCAGTTCGGCAAGTGAGG+TGG + Chr3:100529599-100529618 None:intergenic 60.0%
GAGGGAAAATTGCGCGGTGG+CGG + Chr3:100526223-100526242 None:intergenic 60.0%
GGGAGAGCCTCTACGACAAG+TGG - Chr3:100528384-100528403 MsG0380017774.01.T01:intron 60.0%
TGCCAGGGATTGTGTCCCAG+AGG - Chr3:100526646-100526665 MsG0380017774.01.T01:intron 60.0%
GGGAGAGCCTCTGCGACAAG+TGG - Chr3:100528009-100528028 MsG0380017774.01.T01:intron 65.0%
! AAATTGCGCGGTGGCGGTGG+CGG + Chr3:100526217-100526236 None:intergenic 65.0%
! GGAAAATTGCGCGGTGGCGG+TGG + Chr3:100526220-100526239 None:intergenic 65.0%
!! TTGCGCGGTGGCGGTGGCGG+TGG + Chr3:100526214-100526233 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100526139 100530103 100526139 ID=MsG0380017774.01;Name=MsG0380017774.01
Chr3 mRNA 100526139 100530103 100526139 ID=MsG0380017774.01.T01;Parent=MsG0380017774.01;Name=MsG0380017774.01.T01;_AED=0.44;_eAED=0.54;_QI=26|0.33|0.25|1|1|1|4|0|145
Chr3 exon 100526139 100526219 100526139 ID=MsG0380017774.01.T01:exon:2837;Parent=MsG0380017774.01.T01
Chr3 exon 100528946 100529005 100528946 ID=MsG0380017774.01.T01:exon:2836;Parent=MsG0380017774.01.T01
Chr3 exon 100529530 100529633 100529530 ID=MsG0380017774.01.T01:exon:2835;Parent=MsG0380017774.01.T01
Chr3 exon 100529885 100530103 100529885 ID=MsG0380017774.01.T01:exon:2834;Parent=MsG0380017774.01.T01
Chr3 five_prime_UTR 100530078 100530103 100530078 ID=MsG0380017774.01.T01:five_prime_utr;Parent=MsG0380017774.01.T01
Chr3 CDS 100529885 100530077 100529885 ID=MsG0380017774.01.T01:cds;Parent=MsG0380017774.01.T01
Chr3 CDS 100529530 100529633 100529530 ID=MsG0380017774.01.T01:cds;Parent=MsG0380017774.01.T01
Chr3 CDS 100528946 100529005 100528946 ID=MsG0380017774.01.T01:cds;Parent=MsG0380017774.01.T01
Chr3 CDS 100526139 100526219 100526139 ID=MsG0380017774.01.T01:cds;Parent=MsG0380017774.01.T01
Gene Sequence

>MsG0380017774.01.T01

ATGCCGTTACCAGCAGCTACAGTTTCTGCTCTCAACTCTTTCTCATCCACCGCCACCGCCACCGCGCAATTTTCCCTCCCTCCAAAACGTAACCTTCCCCTTTCCTCTTCTCACATTTTCTCTCGCAGAGACATAGCGTTACTCTCATTCTTTTCACTCTCTGCACCTGCCTCCGCCATTGACATTTGCATCTATGAAGATTTGCAGAAATTTCAGCAGATCAGATCTGCTGCCAGGGATTGTGTCCCAGAGGATAGGAATTCTTTCGTAGCTTTCCAAGCTAACACCGGAGTTGAGGTGTGCACATTTCGGTTGATTGTGAAGAATGCAGCCTCCTTGCTTGGAAAGAAGGATCCTAGTGGACGTGTTTTTGAACTGGTTTGGGTGGATATAAATTGTAACATCGATTTGAAAACTGAAGAAAGTTACATTTTTTAG

Protein sequence

>MsG0380017774.01.T01

MPLPAATVSALNSFSSTATATAQFSLPPKRNLPLSSSHIFSRRDIALLSFFSLSAPASAIDICIYEDLQKFQQIRSAARDCVPEDRNSFVAFQANTGVEVCTFRLIVKNAASLLGKKDPSGRVFELVWVDINCNIDLKTEESYIF*