AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008015.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008015.01.T01 MTR_2g437160 89.737 419 35 3 1 419 1 411 0.0 754
MsG0280008015.01.T01 MTR_2g437150 75.610 410 94 2 12 419 1 406 0.0 632
MsG0280008015.01.T01 MTR_2g437170 75.610 410 94 2 12 419 1 406 0.0 630
MsG0280008015.01.T01 MTR_2g437120 74.384 406 95 2 12 417 1 397 0.0 596
MsG0280008015.01.T01 MTR_2g076320 70.617 405 110 3 12 416 1 396 0.0 563
MsG0280008015.01.T01 MTR_2g437990 71.111 405 107 4 12 416 1 395 0.0 562
MsG0280008015.01.T01 MTR_2g437180 69.608 408 112 2 12 419 1 396 0.0 558
MsG0280008015.01.T01 MTR_2g437100 71.465 396 106 2 10 403 5 395 0.0 546
MsG0280008015.01.T01 MTR_2g437960 70.864 405 112 2 12 416 1 399 0.0 546
MsG0280008015.01.T01 MTR_2g437960 70.864 405 112 2 12 416 1 399 0.0 545
MsG0280008015.01.T01 MTR_2g438010 67.654 405 122 3 12 416 21 416 0.0 543
MsG0280008015.01.T01 MTR_2g437940 68.148 405 91 2 12 416 1 367 0.0 536
MsG0280008015.01.T01 MTR_2g437200 62.755 392 107 3 47 403 11 398 1.14e-164 468
MsG0280008015.01.T01 MTR_2g437240 59.753 405 116 3 46 415 18 410 9.04e-159 454
MsG0280008015.01.T01 MTR_2g437130 59.574 376 141 3 42 417 21 385 2.44e-151 434
MsG0280008015.01.T01 MTR_2g438020 58.747 383 120 3 69 416 70 449 1.06e-148 431
MsG0280008015.01.T01 MTR_2g437080 53.406 367 159 3 47 413 26 380 7.22e-129 377
MsG0280008015.01.T01 MTR_2g437160 94.149 188 11 0 232 419 133 320 1.00e-127 372
MsG0280008015.01.T01 MTR_2g437160 83.803 142 16 2 1 142 1 135 7.72e-73 231
MsG0280008015.01.T01 MTR_2g437020 52.830 371 160 5 43 411 21 378 2.24e-123 363
MsG0280008015.01.T01 MTR_2g436440 49.740 384 181 3 32 415 17 388 5.63e-121 357
MsG0280008015.01.T01 MTR_2g437060 51.220 369 168 4 43 411 37 393 8.17e-120 354
MsG0280008015.01.T01 MTR_2g437030 49.869 383 179 4 33 415 99 468 4.80e-117 350
MsG0280008015.01.T01 MTR_2g436400 48.656 372 180 2 36 407 21 381 1.21e-111 333
MsG0280008015.01.T01 MTR_2g437260 47.778 360 174 5 50 407 23 370 1.89e-109 328
MsG0280008015.01.T01 MTR_2g437040 49.575 353 175 2 63 415 33 382 2.78e-109 327
MsG0280008015.01.T01 MTR_4g119550 47.126 348 178 4 65 411 46 388 9.00e-106 318
MsG0280008015.01.T01 MTR_2g436460 48.696 345 171 4 63 406 40 379 2.25e-100 304
MsG0280008015.01.T01 MTR_4g120380 46.491 342 170 3 63 400 37 369 1.42e-96 294
MsG0280008015.01.T01 MTR_4g119580 44.282 341 185 2 61 401 35 370 6.63e-91 280
MsG0280008015.01.T01 MTR_4g120380 45.672 335 168 4 63 392 37 362 3.60e-90 279
MsG0280008015.01.T01 MTR_2g019810 43.195 338 179 7 70 403 31 359 6.47e-79 248
MsG0280008015.01.T01 MTR_2g019840 39.842 379 206 9 45 410 9 378 5.83e-78 246
MsG0280008015.01.T01 MTR_2g437090 54.386 171 78 0 246 416 1 171 1.35e-59 192
MsG0280008015.01.T01 MTR_3g450500 29.863 365 249 4 42 403 12 372 4.34e-49 171
MsG0280008015.01.T01 MTR_4g007490 30.352 369 241 8 37 401 12 368 3.16e-46 163
MsG0280008015.01.T01 MTR_4g049400 54.717 159 63 2 12 170 1 150 4.59e-46 159
MsG0280008015.01.T01 MTR_4g119570 37.349 249 120 2 153 401 17 229 1.27e-45 157
MsG0280008015.01.T01 MTR_8g081000 30.492 305 204 5 101 401 85 385 1.20e-35 135
MsG0280008015.01.T01 MTR_8g081000 29.703 303 209 3 101 401 85 385 1.70e-35 135
MsG0280008015.01.T01 MTR_8g081000 30.492 305 204 5 101 401 85 385 1.80e-35 135
MsG0280008015.01.T01 MTR_2g436370 41.477 176 80 2 54 229 38 190 1.65e-34 127
MsG0280008015.01.T01 MTR_8g080990 30.537 298 203 3 102 397 73 368 2.63e-31 123
MsG0280008015.01.T01 MTR_3g085240 53.333 90 25 1 305 394 176 248 7.38e-22 94.7
MsG0280008015.01.T01 MTR_3g085240 41.045 134 65 4 68 197 52 175 1.35e-16 79.7
MsG0280008015.01.T01 MTR_2g436380 58.333 60 25 0 246 305 1 60 4.42e-17 81.6
MsG0280008015.01.T01 MTR_8g012210 20.323 310 237 6 116 417 63 370 9.44e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008015.01.T01 AT1G21150 29.793 386 255 6 20 398 8 384 2.20e-55 188
MsG0280008015.01.T01 AT1G21150 29.870 385 254 6 21 398 73 448 1.17e-54 188
MsG0280008015.01.T01 AT1G21150 31.065 338 228 3 64 398 13 348 1.22e-54 185
MsG0280008015.01.T01 AT5G07900 32.194 351 228 6 56 400 53 399 1.62e-54 186
MsG0280008015.01.T01 AT1G61970 27.401 354 211 7 72 386 53 399 1.28e-31 125
MsG0280008015.01.T01 AT1G61970 27.401 354 211 7 72 386 53 399 1.28e-31 125
MsG0280008015.01.T01 AT1G61970 27.401 354 211 7 72 386 53 399 1.28e-31 125
MsG0280008015.01.T01 AT1G61970 27.401 354 211 7 72 386 53 399 1.28e-31 125
MsG0280008015.01.T01 AT1G61970 27.401 354 211 7 72 386 53 399 1.28e-31 125
MsG0280008015.01.T01 AT1G61970 27.401 354 211 7 72 386 53 399 1.28e-31 125
MsG0280008015.01.T01 AT1G61970 27.401 354 211 7 72 386 53 399 1.28e-31 125
MsG0280008015.01.T01 AT1G61990 26.902 368 218 6 72 400 53 408 1.42e-31 125
MsG0280008015.01.T01 AT1G61990 26.902 368 218 6 72 400 53 408 1.42e-31 125
MsG0280008015.01.T01 AT1G61980 27.401 354 211 7 72 386 53 399 5.33e-29 117
MsG0280008015.01.T01 AT1G61980 27.401 354 211 7 72 386 53 399 5.33e-29 117
MsG0280008015.01.T01 AT1G61980 27.401 354 211 7 72 386 53 399 5.33e-29 117
MsG0280008015.01.T01 AT1G62120 27.666 347 212 5 53 363 38 381 2.73e-28 116
MsG0280008015.01.T01 AT5G64950 25.641 351 250 6 60 401 28 376 1.51e-26 110
MsG0280008015.01.T01 AT3G46950 29.091 275 178 6 47 318 31 291 1.13e-25 108
MsG0280008015.01.T01 AT1G61960 29.796 245 167 3 72 315 53 293 8.13e-24 103
MsG0280008015.01.T01 AT1G62110 28.148 270 181 5 53 316 33 295 8.93e-23 100
MsG0280008015.01.T01 AT5G23930 25.238 420 229 10 40 386 24 431 3.77e-22 98.6
MsG0280008015.01.T01 AT1G62085 28.622 283 189 5 43 315 18 297 2.03e-21 96.3
MsG0280008015.01.T01 AT1G62085 28.622 283 189 5 43 315 18 297 2.03e-21 96.3
MsG0280008015.01.T01 AT1G62150 27.347 245 174 3 72 315 59 300 1.13e-19 91.3
MsG0280008015.01.T01 AT1G62010 24.503 302 187 3 98 363 63 359 1.77e-19 90.5

Find 77 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATGAAATTACCTAATT+AGG 0.067642 2:-24332556 None:intergenic
ATCAATTTGATGACTGATTT+TGG 0.089088 2:+24331953 MsG0280008015.01.T01:CDS
AAAAGAGGGTGGTTGAATTT+TGG 0.159593 2:-24331404 None:intergenic
TCTTACCTCATCAACAATTT+TGG 0.162834 2:+24331527 MsG0280008015.01.T01:CDS
CAGAAACTTCTGAGTGAAAT+TGG 0.174679 2:-24331446 None:intergenic
TTCAATTGAAAAGATTAATT+TGG 0.195429 2:+24332234 MsG0280008015.01.T01:CDS
TTGGAGGAAATTAAGGGTTT+AGG 0.245226 2:+24332052 MsG0280008015.01.T01:CDS
ACCATTTCTTCAACATAGTT+TGG 0.247572 2:-24331331 None:intergenic
TAAGTCATTGGAGGAAATTA+AGG 0.258351 2:+24332045 MsG0280008015.01.T01:CDS
TGGAGGAAATTAAGGGTTTA+GGG 0.265552 2:+24332053 MsG0280008015.01.T01:CDS
ATAACTGATTCAGGATTATC+AGG 0.280534 2:-24331608 None:intergenic
TGGCATGCCATTCCCTAATT+AGG 0.281551 2:+24332543 MsG0280008015.01.T01:CDS
AAGAAGATGATAACTGATTC+AGG 0.299336 2:-24331617 None:intergenic
GCATATCTTTACTCATAGTT+TGG 0.305624 2:+24332315 MsG0280008015.01.T01:CDS
AAGATGTTATTCGGGCATTT+AGG 0.309542 2:+24332188 MsG0280008015.01.T01:CDS
TTACTCATAGTTTGGAGAAA+TGG 0.310576 2:+24332323 MsG0280008015.01.T01:CDS
ATTATGAAATTACCTAATTA+GGG 0.316707 2:-24332555 None:intergenic
AAAGGATTTGATTAAGTCAT+TGG 0.323129 2:+24332033 MsG0280008015.01.T01:CDS
TCCAAACTATGTTGAAGAAA+TGG 0.347234 2:+24331330 MsG0280008015.01.T01:CDS
ATCATCTTCTTTCAAAATCA+TGG 0.357053 2:+24331629 MsG0280008015.01.T01:CDS
ATTAGCCACAATAAGGTGAT+AGG 0.365074 2:-24331930 None:intergenic
GGTCTGATGAAGATGTTATT+CGG 0.368419 2:+24332179 MsG0280008015.01.T01:CDS
GATCCTTCAACGACTACTTT+TGG 0.376544 2:+24332079 MsG0280008015.01.T01:CDS
ATTGAAGTCAACATCATATC+AGG 0.376797 2:-24332217 None:intergenic
AAAGTAACCAAGGTGCCTTT+TGG 0.377305 2:-24331682 None:intergenic
TCAATTGGGTTGGAATTCAT+TGG 0.379433 2:+24332276 MsG0280008015.01.T01:CDS
AAGTCGACGTCTTTAAGAAA+TGG 0.383108 2:+24332152 MsG0280008015.01.T01:CDS
AATTGATATTAGCCACAATA+AGG 0.394061 2:-24331937 None:intergenic
TCCTTTGAACAAATTAGAAA+TGG 0.396283 2:-24332016 None:intergenic
AGTCGACGTCTTTAAGAAAT+GGG 0.397049 2:+24332153 MsG0280008015.01.T01:CDS
TGATTCTGAAGTAGCTGTTA+TGG 0.404626 2:-24331471 None:intergenic
GTCTGATGAAGATGTTATTC+GGG 0.415290 2:+24332180 MsG0280008015.01.T01:CDS
GCAAACAATGGCATCCTTGT+TGG 0.416664 2:-24331873 None:intergenic
AAGTCATTGGAGGAAATTAA+GGG 0.425633 2:+24332046 MsG0280008015.01.T01:CDS
GAGACATAAAACAACATTGT+TGG 0.439877 2:-24331360 None:intergenic
ACCATTTCTAATTTGTTCAA+AGG 0.447332 2:+24332015 MsG0280008015.01.T01:CDS
ATGAGGTAAGATACAGAGAA+TGG 0.449017 2:-24331515 None:intergenic
AACAAGTGTTGGTTCAAAAG+AGG 0.450938 2:-24331419 None:intergenic
TTTCATCACAACCCCACAAA+AGG 0.473339 2:+24331702 MsG0280008015.01.T01:CDS
AGTAAAGATATGCGGCCGTT+TGG 0.484898 2:-24332305 None:intergenic
ATCAGATAAAGAAGCACCAT+TGG 0.490214 2:-24331753 None:intergenic
ATGGATCGTTCCAAGGGGAT+TGG 0.491121 2:+24332342 MsG0280008015.01.T01:CDS
ATTCATTGGCACTTACCAAA+CGG 0.496350 2:+24332290 MsG0280008015.01.T01:CDS
AGAAACTTCTGAGTGAAATT+GGG 0.497421 2:-24331445 None:intergenic
AAGCTACTTCGTAAAATTCG+AGG 0.501144 2:-24331800 None:intergenic
TAACCAAAAGTAGTCGTTGA+AGG 0.503134 2:-24332082 None:intergenic
TTTGGGTCAATCAATTGGGT+TGG 0.506924 2:+24332266 MsG0280008015.01.T01:CDS
GAAATTACCTAATTAGGGAA+TGG 0.519585 2:-24332550 None:intergenic
TGGAGAAATGGATCGTTCCA+AGG 0.531827 2:+24332335 MsG0280008015.01.T01:CDS
GGATTTGATTAAGTCATTGG+AGG 0.537188 2:+24332036 MsG0280008015.01.T01:CDS
CAAAGCTTTCAACAACAAGC+AGG 0.537532 2:+24331571 MsG0280008015.01.T01:CDS
CATACGCATCATCATCCAAA+AGG 0.539175 2:+24331667 MsG0280008015.01.T01:CDS
AGAAACCAAAATTGTTGATG+AGG 0.541698 2:-24331532 None:intergenic
TTATCCCTATCACCTTATTG+TGG 0.550243 2:+24331925 MsG0280008015.01.T01:CDS
AGCTACTTCGTAAAATTCGA+GGG 0.550673 2:-24331799 None:intergenic
TTGTTTGCTTAATAAAACAT+TGG 0.567835 2:+24331888 MsG0280008015.01.T01:CDS
AAATTGGGAACAACAAGTGT+TGG 0.569190 2:-24331430 None:intergenic
TTATCTATTAAAGCTATATG+AGG 0.570269 2:+24332486 MsG0280008015.01.T01:CDS
TTAGCCACAATAAGGTGATA+GGG 0.570365 2:-24331929 None:intergenic
GGAGAAATGGATCGTTCCAA+GGG 0.570800 2:+24332336 MsG0280008015.01.T01:CDS
ACAAGTGTTGGTTCAAAAGA+GGG 0.571835 2:-24331418 None:intergenic
TGAGGTAAGATACAGAGAAT+GGG 0.574655 2:-24331514 None:intergenic
AATTGCACAACCAATCCCCT+TGG 0.578914 2:-24332352 None:intergenic
AATGAAACTTGCATATACAA+TGG 0.579324 2:+24332513 MsG0280008015.01.T01:CDS
TCATCATCCAAAAGGCACCT+TGG 0.596358 2:+24331675 MsG0280008015.01.T01:CDS
TAACTGATTCAGGATTATCA+GGG 0.597054 2:-24331607 None:intergenic
CGAGGGTTTGCAGTTAACAA+CGG 0.616566 2:-24331782 None:intergenic
GCATATACAATGGAAAACAA+TGG 0.623136 2:+24332523 MsG0280008015.01.T01:CDS
GTCGACGTCTTTAAGAAATG+GGG 0.627773 2:+24332154 MsG0280008015.01.T01:CDS
ACGTCTTTAAGAAATGGGGT+TGG 0.649489 2:+24332158 MsG0280008015.01.T01:CDS
AGTGTTGGTTCAAAAGAGGG+TGG 0.675240 2:-24331415 None:intergenic
AAACTATGAGTAAAGATATG+CGG 0.677720 2:-24332313 None:intergenic
AACTGATTCAGGATTATCAG+GGG 0.678042 2:-24331606 None:intergenic
TAGGTTCTTTAAAACCAACA+AGG 0.692553 2:+24331859 MsG0280008015.01.T01:CDS
GAGAAATGGATCGTTCCAAG+GGG 0.704847 2:+24332337 MsG0280008015.01.T01:CDS
GGTTGTGATGAAAGTAACCA+AGG 0.737190 2:-24331692 None:intergenic
AATGTAGTGAGAATGAGATG+AGG 0.746317 2:-24331308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTAATAATTGAAAAAGA+GGG - Chr2:24331841-24331860 None:intergenic 15.0%
!! TTCAATTGAAAAGATTAATT+TGG + Chr2:24332234-24332253 MsG0280008015.01.T01:CDS 15.0%
!!! AATTTTTCAGAATATCTAAA+TGG - Chr2:24332424-24332443 None:intergenic 15.0%
!! CTACTTAATAATTGAAAAAG+AGG - Chr2:24331842-24331861 None:intergenic 20.0%
!! GATAGAAAAAATTGAAACTT+TGG - Chr2:24331734-24331753 None:intergenic 20.0%
!! TTATCTATTAAAGCTATATG+AGG + Chr2:24332486-24332505 MsG0280008015.01.T01:CDS 20.0%
!! TTGTTTGCTTAATAAAACAT+TGG + Chr2:24331888-24331907 MsG0280008015.01.T01:CDS 20.0%
!!! ATGTTTTATTAAGCAAACAA+TGG - Chr2:24331888-24331907 None:intergenic 20.0%
!!! CTCTTTTTCAATTATTAAGT+AGG + Chr2:24331840-24331859 MsG0280008015.01.T01:CDS 20.0%
!!! TTTCAATTTTTTCTATCCAA+TGG + Chr2:24331737-24331756 MsG0280008015.01.T01:CDS 20.0%
!!! TTTTTTACTTGTACAGTTAT+TGG - Chr2:24332119-24332138 None:intergenic 20.0%
! AAACTATGAGTAAAGATATG+CGG - Chr2:24332316-24332335 None:intergenic 25.0%
! AAAGGATTTGATTAAGTCAT+TGG + Chr2:24332033-24332052 MsG0280008015.01.T01:CDS 25.0%
! AATGAAACTTGCATATACAA+TGG + Chr2:24332513-24332532 MsG0280008015.01.T01:CDS 25.0%
! AATTGATATTAGCCACAATA+AGG - Chr2:24331940-24331959 None:intergenic 25.0%
! ACTGTACAAGTAAAAAACTT+TGG + Chr2:24332122-24332141 MsG0280008015.01.T01:CDS 25.0%
! ATCATCTTCTTTCAAAATCA+TGG + Chr2:24331629-24331648 MsG0280008015.01.T01:CDS 25.0%
! CTGTACAAGTAAAAAACTTT+GGG + Chr2:24332123-24332142 MsG0280008015.01.T01:CDS 25.0%
! TCCTTTGAACAAATTAGAAA+TGG - Chr2:24332019-24332038 None:intergenic 25.0%
!!! ACCATTTCTAATTTGTTCAA+AGG + Chr2:24332015-24332034 MsG0280008015.01.T01:CDS 25.0%
!!! ATCAATTTGATGACTGATTT+TGG + Chr2:24331953-24331972 MsG0280008015.01.T01:CDS 25.0%
!!! TAATTTGGTGATGAGTTTTT+GGG + Chr2:24332249-24332268 MsG0280008015.01.T01:CDS 25.0%
!!! TTAATTTGGTGATGAGTTTT+TGG + Chr2:24332248-24332267 MsG0280008015.01.T01:CDS 25.0%
AAGTCATTGGAGGAAATTAA+GGG + Chr2:24332046-24332065 MsG0280008015.01.T01:CDS 30.0%
ACCATTTCTTCAACATAGTT+TGG - Chr2:24331334-24331353 None:intergenic 30.0%
AGAAACCAAAATTGTTGATG+AGG - Chr2:24331535-24331554 None:intergenic 30.0%
AGAAACTTCTGAGTGAAATT+GGG - Chr2:24331448-24331467 None:intergenic 30.0%
ATTGAAGTCAACATCATATC+AGG - Chr2:24332220-24332239 None:intergenic 30.0%
GAGACATAAAACAACATTGT+TGG - Chr2:24331363-24331382 None:intergenic 30.0%
GCATATACAATGGAAAACAA+TGG + Chr2:24332523-24332542 MsG0280008015.01.T01:CDS 30.0%
GCATATCTTTACTCATAGTT+TGG + Chr2:24332315-24332334 MsG0280008015.01.T01:CDS 30.0%
TAAGTCATTGGAGGAAATTA+AGG + Chr2:24332045-24332064 MsG0280008015.01.T01:CDS 30.0%
TCCAAACTATGTTGAAGAAA+TGG + Chr2:24331330-24331349 MsG0280008015.01.T01:CDS 30.0%
TTACTCATAGTTTGGAGAAA+TGG + Chr2:24332323-24332342 MsG0280008015.01.T01:CDS 30.0%
! AAGAAGATGATAACTGATTC+AGG - Chr2:24331620-24331639 None:intergenic 30.0%
! ATAACTGATTCAGGATTATC+AGG - Chr2:24331611-24331630 None:intergenic 30.0%
! GTGCAATTTCTTTTGATGAA+AGG + Chr2:24332367-24332386 MsG0280008015.01.T01:CDS 30.0%
! TAACTGATTCAGGATTATCA+GGG - Chr2:24331610-24331629 None:intergenic 30.0%
! TCTTACCTCATCAACAATTT+TGG + Chr2:24331527-24331546 MsG0280008015.01.T01:CDS 30.0%
!! TAGGTTCTTTAAAACCAACA+AGG + Chr2:24331859-24331878 MsG0280008015.01.T01:CDS 30.0%
!!! AGTTTTTGGGTCAATCAATT+GGG + Chr2:24332262-24332281 MsG0280008015.01.T01:CDS 30.0%
AAATTGGGAACAACAAGTGT+TGG - Chr2:24331433-24331452 None:intergenic 35.0%
AAGATGTTATTCGGGCATTT+AGG + Chr2:24332188-24332207 MsG0280008015.01.T01:CDS 35.0%
AAGCTACTTCGTAAAATTCG+AGG - Chr2:24331803-24331822 None:intergenic 35.0%
AATGTAGTGAGAATGAGATG+AGG - Chr2:24331311-24331330 None:intergenic 35.0%
AGCTACTTCGTAAAATTCGA+GGG - Chr2:24331802-24331821 None:intergenic 35.0%
ATGAGGTAAGATACAGAGAA+TGG - Chr2:24331518-24331537 None:intergenic 35.0%
ATTAGCCACAATAAGGTGAT+AGG - Chr2:24331933-24331952 None:intergenic 35.0%
ATTCATTGGCACTTACCAAA+CGG + Chr2:24332290-24332309 MsG0280008015.01.T01:CDS 35.0%
CAGAAACTTCTGAGTGAAAT+TGG - Chr2:24331449-24331468 None:intergenic 35.0%
GGATTTGATTAAGTCATTGG+AGG + Chr2:24332036-24332055 MsG0280008015.01.T01:CDS 35.0%
GGTCTGATGAAGATGTTATT+CGG + Chr2:24332179-24332198 MsG0280008015.01.T01:CDS 35.0%
GTCTGATGAAGATGTTATTC+GGG + Chr2:24332180-24332199 MsG0280008015.01.T01:CDS 35.0%
TAACCAAAAGTAGTCGTTGA+AGG - Chr2:24332085-24332104 None:intergenic 35.0%
TGAGGTAAGATACAGAGAAT+GGG - Chr2:24331517-24331536 None:intergenic 35.0%
TGGAGGAAATTAAGGGTTTA+GGG + Chr2:24332053-24332072 MsG0280008015.01.T01:CDS 35.0%
TTAGCCACAATAAGGTGATA+GGG - Chr2:24331932-24331951 None:intergenic 35.0%
TTATCCCTATCACCTTATTG+TGG + Chr2:24331925-24331944 MsG0280008015.01.T01:CDS 35.0%
TTGGAGGAAATTAAGGGTTT+AGG + Chr2:24332052-24332071 MsG0280008015.01.T01:CDS 35.0%
! AAAAGAGGGTGGTTGAATTT+TGG - Chr2:24331407-24331426 None:intergenic 35.0%
! AAAGAGGGTGGTTGAATTTT+GGG - Chr2:24331406-24331425 None:intergenic 35.0%
! AACTGATTCAGGATTATCAG+GGG - Chr2:24331609-24331628 None:intergenic 35.0%
! AAGTCGACGTCTTTAAGAAA+TGG + Chr2:24332152-24332171 MsG0280008015.01.T01:CDS 35.0%
! ACTTTGGCAATAACCTTTTG+TGG - Chr2:24331718-24331737 None:intergenic 35.0%
! AGTCGACGTCTTTAAGAAAT+GGG + Chr2:24332153-24332172 MsG0280008015.01.T01:CDS 35.0%
! CTTTGGCAATAACCTTTTGT+GGG - Chr2:24331717-24331736 None:intergenic 35.0%
! TCGAATTTTACGAAGTAGCT+TGG + Chr2:24331802-24331821 MsG0280008015.01.T01:CDS 35.0%
! TTTGGCAATAACCTTTTGTG+GGG - Chr2:24331716-24331735 None:intergenic 35.0%
!! AACAAGTGTTGGTTCAAAAG+AGG - Chr2:24331422-24331441 None:intergenic 35.0%
!! ACAAGTGTTGGTTCAAAAGA+GGG - Chr2:24331421-24331440 None:intergenic 35.0%
!! ATCAGATAAAGAAGCACCAT+TGG - Chr2:24331756-24331775 None:intergenic 35.0%
!! GAAGTTTGTTTTCAGCTCTA+AGG + Chr2:24332453-24332472 MsG0280008015.01.T01:CDS 35.0%
!! TCAATTGGGTTGGAATTCAT+TGG + Chr2:24332276-24332295 MsG0280008015.01.T01:CDS 35.0%
!! TGATTCTGAAGTAGCTGTTA+TGG - Chr2:24331474-24331493 None:intergenic 35.0%
!!! GAGTTTTTGGGTCAATCAAT+TGG + Chr2:24332261-24332280 MsG0280008015.01.T01:CDS 35.0%
CAAAGCTTTCAACAACAAGC+AGG + Chr2:24331571-24331590 MsG0280008015.01.T01:CDS 40.0%
CATACGCATCATCATCCAAA+AGG + Chr2:24331667-24331686 MsG0280008015.01.T01:CDS 40.0%
GCGAAAAAAGAATGCTAGCT+TGG + Chr2:24332393-24332412 MsG0280008015.01.T01:CDS 40.0%
GGTTGTGATGAAAGTAACCA+AGG - Chr2:24331695-24331714 None:intergenic 40.0%
TTTCATCACAACCCCACAAA+AGG + Chr2:24331702-24331721 MsG0280008015.01.T01:CDS 40.0%
TTTGGGTCAATCAATTGGGT+TGG + Chr2:24332266-24332285 MsG0280008015.01.T01:CDS 40.0%
! AAGAGGGTGGTTGAATTTTG+GGG - Chr2:24331405-24331424 None:intergenic 40.0%
! ACGTCTTTAAGAAATGGGGT+TGG + Chr2:24332158-24332177 MsG0280008015.01.T01:CDS 40.0%
! GATCCTTCAACGACTACTTT+TGG + Chr2:24332079-24332098 MsG0280008015.01.T01:CDS 40.0%
! GTCGACGTCTTTAAGAAATG+GGG + Chr2:24332154-24332173 MsG0280008015.01.T01:CDS 40.0%
!! AAAGTAACCAAGGTGCCTTT+TGG - Chr2:24331685-24331704 None:intergenic 40.0%
!!! GTTTGTTTTCAGCTCTAAGG+AGG + Chr2:24332456-24332475 MsG0280008015.01.T01:CDS 40.0%
AATTGCACAACCAATCCCCT+TGG - Chr2:24332355-24332374 None:intergenic 45.0%
AGTAAAGATATGCGGCCGTT+TGG - Chr2:24332308-24332327 None:intergenic 45.0%
CGAGGGTTTGCAGTTAACAA+CGG - Chr2:24331785-24331804 None:intergenic 45.0%
GAGAAATGGATCGTTCCAAG+GGG + Chr2:24332337-24332356 MsG0280008015.01.T01:CDS 45.0%
GCAAACAATGGCATCCTTGT+TGG - Chr2:24331876-24331895 None:intergenic 45.0%
GGAGAAATGGATCGTTCCAA+GGG + Chr2:24332336-24332355 MsG0280008015.01.T01:CDS 45.0%
TGGAGAAATGGATCGTTCCA+AGG + Chr2:24332335-24332354 MsG0280008015.01.T01:CDS 45.0%
!! AGTGTTGGTTCAAAAGAGGG+TGG - Chr2:24331418-24331437 None:intergenic 45.0%
!! TCATCATCCAAAAGGCACCT+TGG + Chr2:24331675-24331694 MsG0280008015.01.T01:CDS 45.0%
ATGGATCGTTCCAAGGGGAT+TGG + Chr2:24332342-24332361 MsG0280008015.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr2 gene 24331305 24332564 24331305 ID=MsG0280008015.01;Name=MsG0280008015.01
Chr2 mRNA 24331305 24332564 24331305 ID=MsG0280008015.01.T01;Parent=MsG0280008015.01;Name=MsG0280008015.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|419
Chr2 exon 24331305 24332564 24331305 ID=MsG0280008015.01.T01:exon:13947;Parent=MsG0280008015.01.T01
Chr2 CDS 24331305 24332564 24331305 ID=MsG0280008015.01.T01:cds;Parent=MsG0280008015.01.T01
Gene Sequence

>MsG0280008015.01.T01

ATGCCTCATCTCATTCTCACTACATTCCAAACTATGTTGAAGAAATGGTTTCTTTCCAACAATGTTGTTTTATGTCTCATCACAACAAAATCAACAACCCCAAAATTCAACCACCCTCTTTTGAACCAACACTTGTTGTTCCCAATTTCACTCAGAAGTTTCTGCACCATAACAGCTACTTCAGAATCAGAATCAGAATCAAACACACACCCATTCTCTGTATCTTACCTCATCAACAATTTTGGTTTCTCAACTGAATCAGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCCTGATAATCCTGAATCAGTTATCATCTTCTTTCAAAATCATGGTTTTTCACACGAAAACATACGCATCATCATCCAAAAGGCACCTTGGTTACTTTCATCACAACCCCACAAAAGGTTATTGCCAAAGTTTCAATTTTTTCTATCCAATGGTGCTTCTTTATCTGATATTGTTCCGTTGTTAACTGCAAACCCTCGAATTTTACGAAGTAGCTTGGAGAAACAAATAATCCCTCTTTTTCAATTATTAAGTAGGTTCTTTAAAACCAACAAGGATGCCATTGTTTGCTTAATAAAACATTGGACTACATTTACTATTTATCCCTATCACCTTATTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTCTGATAATGTCATTGCTAGATTGATTCGATATAAACCATTTCTAATTTGTTCAAAGGATTTGATTAAGTCATTGGAGGAAATTAAGGGTTTAGGGTTTGATCCTTCAACGACTACTTTTGGTTATGCTTTGTTAGCCAATAACTGTACAAGTAAAAAACTTTGGGACGAGAAAGTCGACGTCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCGGGCATTTAGGTGTCATCCTGATATGATGTTGACTTCAATTGAAAAGATTAATTTGGTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCATTGGCACTTACCAAACGGCCGCATATCTTTACTCATAGTTTGGAGAAATGGATCGTTCCAAGGGGATTGGTTGTGCAATTTCTTTTGATGAAAGGCTTGCGAAAAAAGAATGCTAGCTTGGTTACACCATTTAGATATTCTGAAAAATTGTTTTTGAAGAAGTTTGTTTTCAGCTCTAAGGAGGAGTGTGATTATCTATTAAAGCTATATGAGGAAAAAATGAAACTTGCATATACAATGGAAAACAATGGCATGCCATTCCCTAATTAG

Protein sequence

>MsG0280008015.01.T01

MPHLILTTFQTMLKKWFLSNNVVLCLITTKSTTPKFNHPLLNQHLLFPISLRSFCTITATSESESESNTHPFSVSYLINNFGFSTESALKAFNNKQVRFNTPDNPESVIIFFQNHGFSHENIRIIIQKAPWLLSSQPHKRLLPKFQFFLSNGASLSDIVPLLTANPRILRSSLEKQIIPLFQLLSRFFKTNKDAIVCLIKHWTTFTIYPYHLIVANINLMTDFGVSDNVIARLIRYKPFLICSKDLIKSLEEIKGLGFDPSTTTFGYALLANNCTSKKLWDEKVDVFKKWGWSDEDVIRAFRCHPDMMLTSIEKINLVMSFWVNQLGWNSLALTKRPHIFTHSLEKWIVPRGLVVQFLLMKGLRKKNASLVTPFRYSEKLFLKKFVFSSKEECDYLLKLYEEKMKLAYTMENNGMPFPN*