AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042889.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042889.01.T01 MTR_8g024180 91.613 155 13 0 16 170 15 169 5.97e-95 273
MsG0880042889.01.T01 MTR_7g118290 55.952 168 54 4 17 169 15 177 7.33e-55 171
MsG0880042889.01.T01 MTR_7g118290 44.048 168 53 5 17 169 15 156 2.61e-33 116
MsG0880042889.01.T01 MTR_4g013200 48.235 85 44 0 85 169 61 145 9.78e-24 91.3
MsG0880042889.01.T01 MTR_7g118290 44.444 126 49 5 17 127 15 134 3.24e-20 82.4
MsG0880042889.01.T01 MTR_7g116795 35.955 89 57 0 82 170 72 160 4.07e-17 74.3
MsG0880042889.01.T01 MTR_5g032440 36.923 65 41 0 106 170 118 182 1.07e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042889.01.T01 AT2G46820 56.643 143 47 3 39 170 35 173 1.48e-48 155
MsG0880042889.01.T01 AT2G46820 56.643 143 47 3 39 170 35 173 1.48e-48 155
MsG0880042889.01.T01 AT1G52220 38.318 107 63 1 63 169 52 155 5.24e-23 89.7
MsG0880042889.01.T01 AT1G52220 38.318 107 62 2 63 169 52 154 3.07e-21 85.1
MsG0880042889.01.T01 AT4G01150 31.724 145 92 2 30 170 22 163 2.64e-20 82.8
MsG0880042889.01.T01 AT4G38100 30.769 117 71 3 61 170 77 190 8.01e-13 63.9
MsG0880042889.01.T01 AT4G38100 30.769 117 71 3 61 170 37 150 1.90e-12 62.0
MsG0880042889.01.T01 AT1G52220 44.000 50 28 0 120 169 77 126 2.48e-11 58.5

Find 48 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTATGCATACCTTTC+TGG 0.079710 8:+15441757 None:intergenic
CTGAAATAATTGGGAGTTAA+AGG 0.160593 8:-15441596 MsG0880042889.01.T01:exon
GAAACAATTACTGAAATAAT+TGG 0.197705 8:-15441606 MsG0880042889.01.T01:CDS
CCTGGAGTTCTTGAGTTAAT+AGG 0.246781 8:-15442700 MsG0880042889.01.T01:CDS
TCTGCTTCACTTCAATTTGT+AGG 0.335678 8:-15444339 MsG0880042889.01.T01:five_prime_UTR
GATAGACTTCCTTTGATTCC+TGG 0.345188 8:-15442718 MsG0880042889.01.T01:CDS
GTTCTTGAGTTAATAGGAAT+TGG 0.346748 8:-15442694 MsG0880042889.01.T01:CDS
CAGAGAAGAAGAGGAGATTA+AGG 0.361311 8:+15444164 None:intergenic
TAATTGGGAGTTAAAGGAAT+TGG 0.364137 8:-15441590 MsG0880042889.01.T01:exon
CTTAATCTCCTCTTCTTCTC+TGG 0.368815 8:-15444163 MsG0880042889.01.T01:CDS
CAAGAAAATAATAAATTACA+TGG 0.393724 8:+15441460 None:intergenic
ATAATAAATTACATGGGATA+AGG 0.395512 8:+15441467 None:intergenic
AAATTACATGGGATAAGGTT+TGG 0.410562 8:+15441472 None:intergenic
AAAGATTGCTCGTGATGTTA+TGG 0.420998 8:-15443116 MsG0880042889.01.T01:CDS
TCACTTCAATTTGTAGGAGC+AGG 0.431177 8:-15444333 MsG0880042889.01.T01:five_prime_UTR
TAGCTAGTGTATTTGCACTA+TGG 0.434144 8:-15442870 MsG0880042889.01.T01:CDS
ATTCTATTGAAGATTTCATC+AGG 0.442328 8:-15441523 MsG0880042889.01.T01:three_prime_UTR
ATCCAACCTCTTTGATTGCA+AGG 0.444865 8:-15444127 MsG0880042889.01.T01:CDS
GATGTTATGGTAATGGCAAC+AGG 0.459632 8:-15443103 MsG0880042889.01.T01:CDS
TTTGCACTATGGAGCTCAGC+TGG 0.465802 8:-15442859 MsG0880042889.01.T01:CDS
AAACAATTACTGAAATAATT+GGG 0.466670 8:-15441605 MsG0880042889.01.T01:CDS
TGAAGATTCTTAACAAACTC+AGG 0.486308 8:+15443046 None:intergenic
TCAGTTGAGTCAACTTCTGT+TGG 0.503744 8:+15443073 None:intergenic
TAAATATGCAGTGGGTTCAT+TGG 0.505381 8:-15442896 MsG0880042889.01.T01:CDS
CCTATTAACTCAAGAACTCC+AGG 0.507872 8:+15442700 None:intergenic
CTCACACATTGTGGAGAAGA+AGG 0.510137 8:+15444087 None:intergenic
ATCAAAGAGGTTGGATGAAG+AGG 0.520063 8:+15444134 None:intergenic
TTAATAGGAATTGGTTACAC+TGG 0.524822 8:-15442685 MsG0880042889.01.T01:CDS
AGGAATTGGACATTCTAAGA+TGG 0.536705 8:-15441576 MsG0880042889.01.T01:three_prime_UTR
TAATAGGAATTGGTTACACT+GGG 0.540472 8:-15442684 MsG0880042889.01.T01:CDS
TGATAATTTGCAAATGAATG+TGG 0.543371 8:+15444306 None:intergenic
AGCCTTGCAATCAAAGAGGT+TGG 0.544069 8:+15444125 None:intergenic
TCAAGAACTCCAGGAATCAA+AGG 0.544788 8:+15442709 None:intergenic
GGATATAGCCAGAGAAGAAG+AGG 0.549137 8:+15444155 None:intergenic
TGCTCGTGATGTTATGGTAA+TGG 0.557462 8:-15443110 MsG0880042889.01.T01:CDS
TTTGATGATAAATATGCAGT+GGG 0.562064 8:-15442904 MsG0880042889.01.T01:CDS
TGAGACAACAAAGGGAGTGA+TGG 0.568925 8:+15444051 None:intergenic
CATGATTCTGAGACAACAAA+GGG 0.569254 8:+15444043 None:intergenic
ATTTGATGATAAATATGCAG+TGG 0.570116 8:-15442905 MsG0880042889.01.T01:CDS
TGTTCATTAATTAATAACAA+TGG 0.586035 8:-15444187 MsG0880042889.01.T01:exon
TCGACTACACTTACAATGAG+TGG 0.598870 8:+15444011 None:intergenic
GTGGAAAGGCTCACACATTG+TGG 0.610597 8:+15444078 None:intergenic
CAAAGGGAGTGATGGAAGTG+TGG 0.624994 8:+15444059 None:intergenic
AAGAAGCCTTGCAATCAAAG+AGG 0.637357 8:+15444121 None:intergenic
GCATGATTCTGAGACAACAA+AGG 0.640301 8:+15444042 None:intergenic
GGAGTGATGGAAGTGTGGAA+AGG 0.647061 8:+15444064 None:intergenic
AAGAAAATAATAAATTACAT+GGG 0.660496 8:+15441461 None:intergenic
AATAGGAATTGGTTACACTG+GGG 0.760636 8:-15442683 MsG0880042889.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATAACATAATTCT+AGG + Chr8:15442817-15442836 None:intergenic 10.0%
!! AAGAAAATAATAAATTACAT+GGG + Chr8:15444305-15444324 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG + Chr8:15443549-15443568 None:intergenic 10.0%
!! TATATGTATATATATATATG+AGG - Chr8:15443887-15443906 MsG0880042889.01.T01:intron 10.0%
!! TATTTCAAAAAAAAAATACA+AGG + Chr8:15443178-15443197 None:intergenic 10.0%
!! TTAAAAAAAAAAAAAAAACC+TGG + Chr8:15442055-15442074 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG - Chr8:15442819-15442838 MsG0880042889.01.T01:intron 10.0%
!!! GGTTTTTTTTTTTTTTTTAA+TGG - Chr8:15442055-15442074 MsG0880042889.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTAATGGTT+GGG - Chr8:15442060-15442079 MsG0880042889.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTTAATGGT+TGG - Chr8:15442059-15442078 MsG0880042889.01.T01:intron 10.0%
!! AAACAATTACTGAAATAATT+GGG - Chr8:15444158-15444177 MsG0880042889.01.T01:CDS 15.0%
!! CAAGAAAATAATAAATTACA+TGG + Chr8:15444306-15444325 None:intergenic 15.0%
!! TCAATAATAAACATTAAGAA+GGG + Chr8:15442794-15442813 None:intergenic 15.0%
!! TGTTCATTAATTAATAACAA+TGG - Chr8:15441576-15441595 MsG0880042889.01.T01:three_prime_UTR 15.0%
!!! TATTTTGTCATAAAATCAAA+TGG + Chr8:15443726-15443745 None:intergenic 15.0%
!!! TTTTTCTCAAAAAAAAAAAG+AGG + Chr8:15442207-15442226 None:intergenic 15.0%
!! AAATATAGAAGATGAATACT+AGG + Chr8:15443946-15443965 None:intergenic 20.0%
!! AAATTGAAAAACTAAAGTAC+CGG + Chr8:15442356-15442375 None:intergenic 20.0%
!! AGAACTTATACAAAAACTAA+AGG - Chr8:15444135-15444154 MsG0880042889.01.T01:CDS 20.0%
!! ATAATAAATTACATGGGATA+AGG + Chr8:15444299-15444318 None:intergenic 20.0%
!! ATAATATTAACTTTCTTCCT+AGG + Chr8:15442607-15442626 None:intergenic 20.0%
!! ATGCTATTAATTCTCATAAA+AGG + Chr8:15442235-15442254 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG - Chr8:15443120-15443139 MsG0880042889.01.T01:CDS 20.0%
!! GAAACAATTACTGAAATAAT+TGG - Chr8:15444157-15444176 MsG0880042889.01.T01:CDS 20.0%
!! GTCAATAATAAACATTAAGA+AGG + Chr8:15442795-15442814 None:intergenic 20.0%
!! TCTAATCTTATCAATTTGTA+AGG + Chr8:15443589-15443608 None:intergenic 20.0%
!! TGCTATTAATTCTCATAAAA+GGG + Chr8:15442234-15442253 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG - Chr8:15443588-15443607 MsG0880042889.01.T01:intron 20.0%
!! TTCACTATAATTTATCACAA+TGG - Chr8:15444039-15444058 MsG0880042889.01.T01:CDS 20.0%
!!! AACTTAAGCTATATTTTAAC+TGG - Chr8:15441527-15441546 MsG0880042889.01.T01:three_prime_UTR 20.0%
!!! AAGATAAGATTGTTTTAAAG+TGG + Chr8:15444361-15444380 None:intergenic 20.0%
!!! ACTTAAGCTATATTTTAACT+GGG - Chr8:15441528-15441547 MsG0880042889.01.T01:three_prime_UTR 20.0%
!!! CATAGTTATTAAGTTTTATC+CGG - Chr8:15442334-15442353 MsG0880042889.01.T01:intron 20.0%
!!! GCGTTGTAATTTTTTTTTTT+TGG - Chr8:15442386-15442405 MsG0880042889.01.T01:intron 20.0%
!!! TTTTTTTCCAGTAATTTCTA+GGG - Chr8:15443666-15443685 MsG0880042889.01.T01:intron 20.0%
! AACTATTGATGAAGATTAGA+CGG - Chr8:15441807-15441826 MsG0880042889.01.T01:intron 25.0%
! ATTCTATTGAAGATTTCATC+AGG - Chr8:15444240-15444259 MsG0880042889.01.T01:five_prime_UTR 25.0%
! CAATATAGATGGATGTAATT+TGG + Chr8:15441915-15441934 None:intergenic 25.0%
! CTTAATAACTATGCATGAAT+AGG + Chr8:15442327-15442346 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG - Chr8:15442757-15442776 MsG0880042889.01.T01:intron 25.0%
! TTTCTCAAAAAACAAAGGTA+CGG + Chr8:15442501-15442520 None:intergenic 25.0%
!! ATTTGATGATAAATATGCAG+TGG - Chr8:15442858-15442877 MsG0880042889.01.T01:CDS 25.0%
!! TATGAGGTATTATTCATCTT+TGG - Chr8:15443903-15443922 MsG0880042889.01.T01:intron 25.0%
!! TGATAATTTGCAAATGAATG+TGG + Chr8:15441460-15441479 None:intergenic 25.0%
!! TTTGATGATAAATATGCAGT+GGG - Chr8:15442859-15442878 MsG0880042889.01.T01:CDS 25.0%
!!! AATATCGCGTATTTGATTTT+TGG - Chr8:15443151-15443170 MsG0880042889.01.T01:intron 25.0%
!!! GGTACTTTAGTTTTTCAATT+TGG - Chr8:15442355-15442374 MsG0880042889.01.T01:intron 25.0%
!!! GTTTTTTTCCAGTAATTTCT+AGG - Chr8:15443665-15443684 MsG0880042889.01.T01:intron 25.0%
!!! TTGTTTTTTAAAATGATCCC+CGG - Chr8:15443215-15443234 MsG0880042889.01.T01:intron 25.0%
!!! TTTTTTTTAATGGTTGGGTA+CGG - Chr8:15442065-15442084 MsG0880042889.01.T01:intron 25.0%
AAAAAAAAAGAGGATATGCG+TGG + Chr8:15442197-15442216 None:intergenic 30.0%
AAATTACATGGGATAAGGTT+TGG + Chr8:15444294-15444313 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG + Chr8:15443676-15443695 None:intergenic 30.0%
AAGCACAATAGTATTTGACA+TGG + Chr8:15443461-15443480 None:intergenic 30.0%
AATATCGGACTCTATCTATA+AGG + Chr8:15443534-15443553 None:intergenic 30.0%
ACAAATTATGCATACCTTTC+TGG + Chr8:15444009-15444028 None:intergenic 30.0%
AGCACAATAGTATTTGACAT+GGG + Chr8:15443460-15443479 None:intergenic 30.0%
ATCAAATGGCTTTCTTAAGA+TGG + Chr8:15443712-15443731 None:intergenic 30.0%
ATGTCAAATACTATTGTGCT+TGG - Chr8:15443460-15443479 MsG0880042889.01.T01:intron 30.0%
CAATTACTTTCACTTGTAAC+AGG - Chr8:15443017-15443036 MsG0880042889.01.T01:intron 30.0%
CTATATTGCTTACTTCTTCT+AGG - Chr8:15441927-15441946 MsG0880042889.01.T01:intron 30.0%
CTGAAATAATTGGGAGTTAA+AGG - Chr8:15444167-15444186 MsG0880042889.01.T01:CDS 30.0%
GAAGAAGTAAGCAATATAGA+TGG + Chr8:15441926-15441945 None:intergenic 30.0%
GCATCAAGTGAAATAATGTT+GGG + Chr8:15443350-15443369 None:intergenic 30.0%
GCTTTCTTAAGATGGTATTT+AGG + Chr8:15443704-15443723 None:intergenic 30.0%
GTTCTTGAGTTAATAGGAAT+TGG - Chr8:15443069-15443088 MsG0880042889.01.T01:CDS 30.0%
TAATAGGAATTGGTTACACT+GGG - Chr8:15443079-15443098 MsG0880042889.01.T01:CDS 30.0%
TAATTGGGAGTTAAAGGAAT+TGG - Chr8:15444173-15444192 MsG0880042889.01.T01:exon 30.0%
TGAAGATTCTTAACAAACTC+AGG + Chr8:15442720-15442739 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG + Chr8:15443351-15443370 None:intergenic 30.0%
TTAATAGGAATTGGTTACAC+TGG - Chr8:15443078-15443097 MsG0880042889.01.T01:CDS 30.0%
! ACTTGATGCATTGATATACA+TGG - Chr8:15443361-15443380 MsG0880042889.01.T01:intron 30.0%
! TATTTTGTTGGCATCATAGT+GGG - Chr8:15442831-15442850 MsG0880042889.01.T01:intron 30.0%
! TCCATTTTCTCCAAAAAAAG+AGG + Chr8:15442128-15442147 None:intergenic 30.0%
! TTCTCAAAAAACAAAGGTAC+GGG + Chr8:15442500-15442519 None:intergenic 30.0%
! TTTCATCAGGATTCATTTTG+TGG - Chr8:15444253-15444272 MsG0880042889.01.T01:five_prime_UTR 30.0%
!! TAGTCATTTTACTGAAGATG+AGG - Chr8:15442261-15442280 MsG0880042889.01.T01:intron 30.0%
!! TTATTTTGTTGGCATCATAG+TGG - Chr8:15442830-15442849 MsG0880042889.01.T01:intron 30.0%
!!! GTACGTTTATCCTCTTTTTT+TGG - Chr8:15442115-15442134 MsG0880042889.01.T01:intron 30.0%
!!! TCCTCTTTTTTTGGAGAAAA+TGG - Chr8:15442124-15442143 MsG0880042889.01.T01:intron 30.0%
!!! TGTTTTTTAAAATGATCCCC+GGG - Chr8:15443216-15443235 MsG0880042889.01.T01:intron 30.0%
AAAAAAAACCTGGTGCTTCA+TGG + Chr8:15442045-15442064 None:intergenic 35.0%
AAAAAAACCTGGTGCTTCAT+GGG + Chr8:15442044-15442063 None:intergenic 35.0%
AAAGATTGCTCGTGATGTTA+TGG - Chr8:15442647-15442666 MsG0880042889.01.T01:intron 35.0%
AACATGCTCAATGGAATAAC+AGG - Chr8:15444110-15444129 MsG0880042889.01.T01:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG - Chr8:15443080-15443099 MsG0880042889.01.T01:CDS 35.0%
AATAGTGATATCGACAGAGT+TGG - Chr8:15442289-15442308 MsG0880042889.01.T01:intron 35.0%
ACAATAGTATTTGACATGGG+GGG + Chr8:15443457-15443476 None:intergenic 35.0%
ACATGCTCAATGGAATAACA+GGG - Chr8:15444111-15444130 MsG0880042889.01.T01:CDS 35.0%
AGAGACACAAGTACTATTCA+GGG + Chr8:15444089-15444108 None:intergenic 35.0%
ATCAAATACGCGATATTTGC+AGG + Chr8:15443148-15443167 None:intergenic 35.0%
ATTGACATATAGATAGGGGA+TGG - Chr8:15443486-15443505 MsG0880042889.01.T01:intron 35.0%
CAAGAAGCTGTATGATACAT+AGG - Chr8:15442738-15442757 MsG0880042889.01.T01:intron 35.0%
CACAATAGTATTTGACATGG+GGG + Chr8:15443458-15443477 None:intergenic 35.0%
CCTGCATTGAATAGTGTATA+AGG + Chr8:15443399-15443418 None:intergenic 35.0%
CCTTATACACTATTCAATGC+AGG - Chr8:15443396-15443415 MsG0880042889.01.T01:intron 35.0%
CGGCATTTCTCAAAAAACAA+AGG + Chr8:15442506-15442525 None:intergenic 35.0%
GCACAATAGTATTTGACATG+GGG + Chr8:15443459-15443478 None:intergenic 35.0%
TAGAGACACAAGTACTATTC+AGG + Chr8:15444090-15444109 None:intergenic 35.0%
TAGCTAGTGTATTTGCACTA+TGG - Chr8:15442893-15442912 MsG0880042889.01.T01:CDS 35.0%
TCAAATACGCGATATTTGCA+GGG + Chr8:15443147-15443166 None:intergenic 35.0%
TCTGCTTCACTTCAATTTGT+AGG - Chr8:15441424-15441443 MsG0880042889.01.T01:three_prime_UTR 35.0%
TTCTATATTTCACCTTGCAG+TGG - Chr8:15443956-15443975 MsG0880042889.01.T01:intron 35.0%
! AGGAATTGGACATTCTAAGA+TGG - Chr8:15444187-15444206 MsG0880042889.01.T01:exon 35.0%
! AGGTTTGGTCAAAAAGCTTA+TGG + Chr8:15444279-15444298 None:intergenic 35.0%
! CATTTTACTGAAGATGAGGA+AGG - Chr8:15442265-15442284 MsG0880042889.01.T01:intron 35.0%
! GCATTGATATACATGGTTGA+TGG - Chr8:15443368-15443387 MsG0880042889.01.T01:intron 35.0%
! GGTGCATTGACATATAGATA+GGG - Chr8:15443481-15443500 MsG0880042889.01.T01:intron 35.0%
! GTGCATTGACATATAGATAG+GGG - Chr8:15443482-15443501 MsG0880042889.01.T01:intron 35.0%
! TAAATATGCAGTGGGTTCAT+TGG - Chr8:15442867-15442886 MsG0880042889.01.T01:CDS 35.0%
! TGGATGTAATTTGGAATCGT+CGG + Chr8:15441906-15441925 None:intergenic 35.0%
! TGGTGCATTGACATATAGAT+AGG - Chr8:15443480-15443499 MsG0880042889.01.T01:intron 35.0%
!! CATGATTCTGAGACAACAAA+GGG + Chr8:15441723-15441742 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG + Chr8:15441873-15441892 None:intergenic 35.0%
!! GATGGCCTTATAGAAGATAT+GGG - Chr8:15443504-15443523 MsG0880042889.01.T01:intron 35.0%
AAGAAGCCTTGCAATCAAAG+AGG + Chr8:15441645-15441664 None:intergenic 40.0%
AATAGTATTTGACATGGGGG+GGG + Chr8:15443455-15443474 None:intergenic 40.0%
ACACTATTCAATGCAGGACT+TGG - Chr8:15443402-15443421 MsG0880042889.01.T01:intron 40.0%
ATCAAAGAGGTTGGATGAAG+AGG + Chr8:15441632-15441651 None:intergenic 40.0%
ATCCAACCTCTTTGATTGCA+AGG - Chr8:15441636-15441655 MsG0880042889.01.T01:intron 40.0%
ATCGTCGGATGAAGATTAGA+CGG + Chr8:15441891-15441910 None:intergenic 40.0%
CAATAGTATTTGACATGGGG+GGG + Chr8:15443456-15443475 None:intergenic 40.0%
CAGAGAAGAAGAGGAGATTA+AGG + Chr8:15441602-15441621 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG + Chr8:15443066-15443085 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG - Chr8:15443063-15443082 MsG0880042889.01.T01:CDS 40.0%
CTTAATCTCCTCTTCTTCTC+TGG - Chr8:15441600-15441619 MsG0880042889.01.T01:CDS 40.0%
GAGACACAAGTACTATTCAG+GGG + Chr8:15444088-15444107 None:intergenic 40.0%
GATAGACTTCCTTTGATTCC+TGG - Chr8:15443045-15443064 MsG0880042889.01.T01:CDS 40.0%
GCCATCCCATATCTTCTATA+AGG + Chr8:15443512-15443531 None:intergenic 40.0%
GCCTTATAGAAGATATGGGA+TGG - Chr8:15443508-15443527 MsG0880042889.01.T01:intron 40.0%
GTCCATTTAAGCTGATAGGT+GGG - Chr8:15443238-15443257 MsG0880042889.01.T01:intron 40.0%
GTGTCTCTAAACATGCTCAA+TGG - Chr8:15444101-15444120 MsG0880042889.01.T01:CDS 40.0%
TACGGGTACGTTTAGCAAAA+CGG + Chr8:15441971-15441990 None:intergenic 40.0%
TCAAGAACTCCAGGAATCAA+AGG + Chr8:15443057-15443076 None:intergenic 40.0%
TCACTTCAATTTGTAGGAGC+AGG - Chr8:15441430-15441449 MsG0880042889.01.T01:three_prime_UTR 40.0%
TCAGTTGAGTCAACTTCTGT+TGG + Chr8:15442693-15442712 None:intergenic 40.0%
TCGACTACACTTACAATGAG+TGG + Chr8:15441755-15441774 None:intergenic 40.0%
TGCTCGTGATGTTATGGTAA+TGG - Chr8:15442653-15442672 MsG0880042889.01.T01:intron 40.0%
! TCTAGGGCTTGATATTACCT+AGG - Chr8:15442587-15442606 MsG0880042889.01.T01:intron 40.0%
!! ACGTAGTTTTCAAGCCAGAA+AGG - Chr8:15443992-15444011 MsG0880042889.01.T01:intron 40.0%
!! GATATACATGGTTGATGGTC+AGG - Chr8:15443373-15443392 MsG0880042889.01.T01:intron 40.0%
!! GATGTTATGGTAATGGCAAC+AGG - Chr8:15442660-15442679 MsG0880042889.01.T01:intron 40.0%
!! GCATGATTCTGAGACAACAA+AGG + Chr8:15441724-15441743 None:intergenic 40.0%
!! GGATGGCCTTATAGAAGATA+TGG - Chr8:15443503-15443522 MsG0880042889.01.T01:intron 40.0%
AGCCTTGCAATCAAAGAGGT+TGG + Chr8:15441641-15441660 None:intergenic 45.0%
ATAGTATTTGACATGGGGGG+GGG + Chr8:15443454-15443473 None:intergenic 45.0%
CCTATCAGCTTAAATGGACC+CGG + Chr8:15443237-15443256 None:intergenic 45.0%
CTATCAGCTTAAATGGACCC+GGG + Chr8:15443236-15443255 None:intergenic 45.0%
CTCACACATTGTGGAGAAGA+AGG + Chr8:15441679-15441698 None:intergenic 45.0%
CTCCCACCTATCAGCTTAAA+TGG + Chr8:15443243-15443262 None:intergenic 45.0%
CTTGTATGCAAACCACTGCA+AGG + Chr8:15443971-15443990 None:intergenic 45.0%
GGATATAGCCAGAGAAGAAG+AGG + Chr8:15441611-15441630 None:intergenic 45.0%
GGTCCATTTAAGCTGATAGG+TGG - Chr8:15443237-15443256 MsG0880042889.01.T01:intron 45.0%
TATCAGCTTAAATGGACCCG+GGG + Chr8:15443235-15443254 None:intergenic 45.0%
TGAGACAACAAAGGGAGTGA+TGG + Chr8:15441715-15441734 None:intergenic 45.0%
TTTGCTAAACGTACCCGTAC+CGG - Chr8:15441972-15441991 MsG0880042889.01.T01:intron 45.0%
! TTTTAATGGTTGGGTACGGC+CGG - Chr8:15442069-15442088 MsG0880042889.01.T01:intron 45.0%
!! GTACTGCAGTGGTACTGATT+GGG - Chr8:15442093-15442112 MsG0880042889.01.T01:intron 45.0%
!! TTCTTCTAGGCTCTGAAGCA+CGG - Chr8:15441940-15441959 MsG0880042889.01.T01:intron 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG - Chr8:15442915-15442934 MsG0880042889.01.T01:CDS 45.0%
CCGGGTCCATTTAAGCTGAT+AGG - Chr8:15443234-15443253 MsG0880042889.01.T01:intron 50.0%
GTGGAAAGGCTCACACATTG+TGG + Chr8:15441688-15441707 None:intergenic 50.0%
TAGTATTTGACATGGGGGGG+GGG + Chr8:15443453-15443472 None:intergenic 50.0%
TTGCTAAACGTACCCGTACC+GGG - Chr8:15441973-15441992 MsG0880042889.01.T01:intron 50.0%
TTTAATGGTTGGGTACGGCC+GGG - Chr8:15442070-15442089 MsG0880042889.01.T01:intron 50.0%
TTTGCACTATGGAGCTCAGC+TGG - Chr8:15442904-15442923 MsG0880042889.01.T01:CDS 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG + Chr8:15441707-15441726 None:intergenic 50.0%
! GGAGTGATGGAAGTGTGGAA+AGG + Chr8:15441702-15441721 None:intergenic 50.0%
!! GGTACTGCAGTGGTACTGAT+TGG - Chr8:15442092-15442111 MsG0880042889.01.T01:intron 50.0%
!! TCTTCTAGGCTCTGAAGCAC+GGG - Chr8:15441941-15441960 MsG0880042889.01.T01:intron 50.0%
ACCCGTGCAACACAGCTTCT+AGG - Chr8:15442570-15442589 MsG0880042889.01.T01:intron 55.0%
AGTATTTGACATGGGGGGGG+GGG + Chr8:15443452-15443471 None:intergenic 55.0%
CCCGTGCAACACAGCTTCTA+GGG - Chr8:15442571-15442590 MsG0880042889.01.T01:intron 55.0%
CCCTAGAAGCTGTGTTGCAC+GGG + Chr8:15442574-15442593 None:intergenic 55.0%
GCCCTAGAAGCTGTGTTGCA+CGG + Chr8:15442575-15442594 None:intergenic 55.0%
TCAGTACCACTGCAGTACCC+CGG + Chr8:15442091-15442110 None:intergenic 55.0%
TTAATGGTTGGGTACGGCCG+GGG - Chr8:15442071-15442090 MsG0880042889.01.T01:intron 55.0%
AAGCTGTGTTGCACGGGTGC+GGG + Chr8:15442568-15442587 None:intergenic 60.0%
GAAGCTGTGTTGCACGGGTG+CGG + Chr8:15442569-15442588 None:intergenic 60.0%
GTATTTGACATGGGGGGGGG+GGG + Chr8:15443451-15443470 None:intergenic 60.0%
TATTTGACATGGGGGGGGGG+GGG + Chr8:15443450-15443469 None:intergenic 60.0%
! GTACGCACCCATGAAGCACC+AGG - Chr8:15442034-15442053 MsG0880042889.01.T01:intron 60.0%
!! CGCGGGTACTGGTACACGTA+CGG - Chr8:15442001-15442020 MsG0880042889.01.T01:intron 60.0%
ACCAGTACCCGCGCAGTACC+CGG + Chr8:15441994-15442013 None:intergenic 65.0%
ATTTGACATGGGGGGGGGGG+GGG + Chr8:15443449-15443468 None:intergenic 65.0%
GTGTTGCACGGGTGCGGGTA+CGG + Chr8:15442563-15442582 None:intergenic 65.0%
TACCCGCGCAGTACCCGGTA+CGG + Chr8:15441989-15442008 None:intergenic 65.0%
TACGGTACCCGGTACGGGTG+CGG + Chr8:15442545-15442564 None:intergenic 65.0%
TGCGGGTACGGTACCCGGTA+CGG + Chr8:15442551-15442570 None:intergenic 65.0%
! TACCCGTACCGGGTACTGCG+CGG - Chr8:15441983-15442002 MsG0880042889.01.T01:intron 65.0%
ACCCGCGCAGTACCCGGTAC+GGG + Chr8:15441988-15442007 None:intergenic 70.0%
ACGGGTGCGGGTACGGTACC+CGG + Chr8:15442556-15442575 None:intergenic 70.0%
ACGGTACCCGGTACGGGTGC+GGG + Chr8:15442544-15442563 None:intergenic 70.0%
GCGGGTACGGTACCCGGTAC+GGG + Chr8:15442550-15442569 None:intergenic 70.0%
GCGGGTGCGGGTACGGGATA+CGG + Chr8:15442526-15442545 None:intergenic 70.0%
TACGGGTGCGGGTGCGGGTA+CGG + Chr8:15442533-15442552 None:intergenic 70.0%
TTTGACATGGGGGGGGGGGG+GGG + Chr8:15443448-15443467 None:intergenic 70.0%
! ACCCGTACCGGGTACTGCGC+GGG - Chr8:15441984-15442003 MsG0880042889.01.T01:intron 70.0%
! ACCGGGTACTGCGCGGGTAC+TGG - Chr8:15441990-15442009 MsG0880042889.01.T01:intron 70.0%
!! GTACGGCCGGGGTACTGCAG+TGG - Chr8:15442082-15442101 MsG0880042889.01.T01:intron 70.0%
ACCCGCACCCGCACCCGTAC+CGG - Chr8:15442534-15442553 MsG0880042889.01.T01:intron 75.0%
ACCCGGTACGGGTGCGGGTG+CGG + Chr8:15442539-15442558 None:intergenic 75.0%
ACGGGTGCGGGTGCGGGTAC+GGG + Chr8:15442532-15442551 None:intergenic 75.0%
TTGACATGGGGGGGGGGGGG+GGG + Chr8:15443447-15443466 None:intergenic 75.0%
! CCCGCACCCGCACCCGTACC+GGG - Chr8:15442535-15442554 MsG0880042889.01.T01:intron 80.0%
! CCCGGTACGGGTGCGGGTGC+GGG + Chr8:15442538-15442557 None:intergenic 80.0%
! TGACATGGGGGGGGGGGGGG+GGG + Chr8:15443446-15443465 None:intergenic 80.0%
! ACATGGGGGGGGGGGGGGGG+GGG + Chr8:15443444-15443463 None:intergenic 85.0%
! GACATGGGGGGGGGGGGGGG+GGG + Chr8:15443445-15443464 None:intergenic 85.0%
! ATGGGGGGGGGGGGGGGGGG+GGG + Chr8:15443442-15443461 None:intergenic 90.0%
! CATGGGGGGGGGGGGGGGGG+GGG + Chr8:15443443-15443462 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr8 gene 15441405 15444380 15441405 ID=MsG0880042889.01;Name=MsG0880042889.01
Chr8 mRNA 15441405 15444380 15441405 ID=MsG0880042889.01.T01;Parent=MsG0880042889.01;Name=MsG0880042889.01.T01;_AED=0.36;_eAED=0.36;_QI=190|1|1|1|0.6|0.66|6|194|170
Chr8 exon 15441405 15441653 15441405 ID=MsG0880042889.01.T01:exon:581;Parent=MsG0880042889.01.T01
Chr8 exon 15441772 15441809 15441772 ID=MsG0880042889.01.T01:exon:580;Parent=MsG0880042889.01.T01
Chr8 exon 15442684 15442746 15442684 ID=MsG0880042889.01.T01:exon:579;Parent=MsG0880042889.01.T01
Chr8 exon 15442849 15442935 15442849 ID=MsG0880042889.01.T01:exon:578;Parent=MsG0880042889.01.T01
Chr8 exon 15443039 15443142 15443039 ID=MsG0880042889.01.T01:exon:577;Parent=MsG0880042889.01.T01
Chr8 exon 15444025 15444380 15444025 ID=MsG0880042889.01.T01:exon:576;Parent=MsG0880042889.01.T01
Chr8 five_prime_UTR 15444191 15444380 15444191 ID=MsG0880042889.01.T01:five_prime_utr;Parent=MsG0880042889.01.T01
Chr8 CDS 15444025 15444190 15444025 ID=MsG0880042889.01.T01:cds;Parent=MsG0880042889.01.T01
Chr8 CDS 15443039 15443142 15443039 ID=MsG0880042889.01.T01:cds;Parent=MsG0880042889.01.T01
Chr8 CDS 15442849 15442935 15442849 ID=MsG0880042889.01.T01:cds;Parent=MsG0880042889.01.T01
Chr8 CDS 15442684 15442746 15442684 ID=MsG0880042889.01.T01:cds;Parent=MsG0880042889.01.T01
Chr8 CDS 15441772 15441809 15441772 ID=MsG0880042889.01.T01:cds;Parent=MsG0880042889.01.T01
Chr8 CDS 15441599 15441653 15441599 ID=MsG0880042889.01.T01:cds;Parent=MsG0880042889.01.T01
Chr8 three_prime_UTR 15441405 15441598 15441405 ID=MsG0880042889.01.T01:three_prime_utr;Parent=MsG0880042889.01.T01
Gene Sequence

>MsG0880042889.01.T01

ATGGCCTTAATCTCCTCTTCTTCTCTGGCTATATCCTCTTCATCCAACCTCTTTGATTGCAAGGCTTCTTTTCAATCATTACCTTCTTCTCCACAATGTGTGAGCCTTTCCACACTTCCATCACTCCCTTTGTTGTCTCAGAATCATGCACTGAAGACCACTCATTATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGACTCAACTGAGCTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTTGGGACAAATTTGATGATAAATATGCAGTGGGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTCAGCTGGTTTTATCTCGGCAATTGATAGACTTCCTTTGATTCCTGGAGTTCTTGAGTTAATAGGAATTGGTTACACTGGGTGGTTTGCATACAAGAACGTAGTTTTCAAGCCAGAAAGGGAAGAACTTATACAAAAACTAAAGGAAACAATTACTGAAATAATTGGGAGTTAA

Protein sequence

>MsG0880042889.01.T01

MALISSSSLAISSSSNLFDCKASFQSLPSSPQCVSLSTLPSLPLLSQNHALKTTHYRKIARDVMVMATGDAPTEVDSTELPEFVKNLQEAWDKFDDKYAVGSLVVASVFALWSSAGFISAIDRLPLIPGVLELIGIGYTGWFAYKNVVFKPEREELIQKLKETITEIIGS*