Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022181.01.T01 | XP_024638210.1 | 71.875 | 64 | 11 | 2 | 2 | 64 | 3 | 60 | 2.66E-16 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022181.01.T01 | G7JIS4 | 71.875 | 64 | 11 | 2 | 2 | 64 | 3 | 60 | 1.79e-16 | 84.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048787.01 | MsG0480022181.01 | 0.800132 | 1.663618e-48 | 7.686362e-46 |
| MsG0180000091.01 | MsG0480022181.01 | 0.800577 | 1.350266e-48 | 6.309410e-46 |
| MsG0180000101.01 | MsG0480022181.01 | 0.816048 | 6.758513e-52 | 4.738444e-49 |
| MsG0180000144.01 | MsG0480022181.01 | 0.817335 | 3.478764e-52 | 2.526261e-49 |
| MsG0180000145.01 | MsG0480022181.01 | 0.823790 | 1.145602e-53 | 9.963574e-51 |
| MsG0180000146.01 | MsG0480022181.01 | 0.845904 | 3.035398e-59 | 5.135667e-56 |
| MsG0180000155.01 | MsG0480022181.01 | 0.835399 | 1.716281e-56 | 2.096442e-53 |
| MsG0180000235.01 | MsG0480022181.01 | 0.804929 | 1.706017e-49 | 8.909190e-47 |
| MsG0180000332.01 | MsG0480022181.01 | 0.809282 | 2.043308e-50 | 1.194741e-47 |
| MsG0180000555.01 | MsG0480022181.01 | 0.852180 | 5.466800e-61 | 1.132991e-57 |
| MsG0180000741.01 | MsG0480022181.01 | 0.814344 | 1.616451e-51 | 1.081887e-48 |
| MsG0180000836.01 | MsG0480022181.01 | 0.820639 | 6.167391e-53 | 4.906742e-50 |
| MsG0180001173.01 | MsG0480022181.01 | 0.846332 | 2.321936e-59 | 3.982530e-56 |
| MsG0180001315.01 | MsG0480022181.01 | 0.806753 | 7.059494e-50 | 3.862668e-47 |
| MsG0180001570.01 | MsG0480022181.01 | 0.815560 | 8.683107e-52 | 6.006752e-49 |
| MsG0180002071.01 | MsG0480022181.01 | 0.824542 | 7.631108e-54 | 6.779785e-51 |
| MsG0180002975.01 | MsG0480022181.01 | 0.805343 | 1.397613e-49 | 7.375979e-47 |
| MsG0180003031.01 | MsG0480022181.01 | 0.804177 | 2.448756e-49 | 1.254116e-46 |
| MsG0180003303.01 | MsG0480022181.01 | 0.828817 | 7.278809e-55 | 7.314871e-52 |
| MsG0180003686.01 | MsG0480022181.01 | 0.805267 | 1.449966e-49 | 7.637153e-47 |
| MsG0180003725.01 | MsG0480022181.01 | 0.800479 | 1.413516e-48 | 6.588462e-46 |
| MsG0180003810.01 | MsG0480022181.01 | 0.811544 | 6.639996e-51 | 4.121767e-48 |
| MsG0180004372.01 | MsG0480022181.01 | 0.826681 | 2.373408e-54 | 2.241303e-51 |
| MsG0180004389.01 | MsG0480022181.01 | 0.810678 | 1.022839e-50 | 6.205324e-48 |
| MsG0180004465.01 | MsG0480022181.01 | 0.845589 | 3.696998e-59 | 6.190399e-56 |
| MsG0180004598.01 | MsG0480022181.01 | 0.813414 | 2.590693e-51 | 1.690794e-48 |
| MsG0180005185.01 | MsG0480022181.01 | 0.800772 | 1.231926e-48 | 5.784824e-46 |
| MsG0180005228.01 | MsG0480022181.01 | 0.819147 | 1.352754e-52 | 1.032559e-49 |
| MsG0180005445.01 | MsG0480022181.01 | 0.838947 | 2.124072e-57 | 2.889328e-54 |
| MsG0180005575.01 | MsG0480022181.01 | 0.804552 | 2.045329e-49 | 1.057655e-46 |
| MsG0180005786.01 | MsG0480022181.01 | 0.808381 | 3.185564e-50 | 1.818765e-47 |
| MsG0180006070.01 | MsG0480022181.01 | 0.806014 | 1.010322e-49 | 5.424960e-47 |
| MsG0180006128.01 | MsG0480022181.01 | 0.802663 | 5.042559e-49 | 2.484197e-46 |
| MsG0180006155.01 | MsG0480022181.01 | 0.824074 | 9.830527e-54 | 8.617447e-51 |
| MsG0180006207.01 | MsG0480022181.01 | 0.822628 | 2.139278e-53 | 1.800516e-50 |
| MsG0280006367.01 | MsG0480022181.01 | 0.801423 | 9.065776e-49 | 4.327855e-46 |
| MsG0280010778.01 | MsG0480022181.01 | 0.801874 | 7.327414e-49 | 3.538345e-46 |
| MsG0280010816.01 | MsG0480022181.01 | 0.807791 | 4.252934e-50 | 2.390715e-47 |
| MsG0280010932.01 | MsG0480022181.01 | 0.809034 | 2.310108e-50 | 1.341741e-47 |
| MsG0280011182.01 | MsG0480022181.01 | 0.800811 | 1.209883e-48 | 5.686840e-46 |
| MsG0280011340.01 | MsG0480022181.01 | 0.852638 | 4.048759e-61 | 8.514504e-58 |
| MsG0280011444.01 | MsG0480022181.01 | 0.801410 | 9.124284e-49 | 4.354263e-46 |
| MsG0380011828.01 | MsG0480022181.01 | 0.806021 | 1.006774e-49 | 5.406969e-47 |
| MsG0380012067.01 | MsG0480022181.01 | 0.804995 | 1.653030e-49 | 8.646407e-47 |
| MsG0380012460.01 | MsG0480022181.01 | 0.820538 | 6.504889e-53 | 5.161283e-50 |
| MsG0380013176.01 | MsG0480022181.01 | 0.805276 | 1.443564e-49 | 7.605225e-47 |
| MsG0380013363.01 | MsG0480022181.01 | 0.810271 | 1.252543e-50 | 7.516875e-48 |
| MsG0380014138.01 | MsG0480022181.01 | 0.836109 | 1.134797e-56 | 1.416043e-53 |
| MsG0380014489.01 | MsG0480022181.01 | 0.841095 | 5.847432e-58 | 8.499943e-55 |
| MsG0380014701.01 | MsG0480022181.01 | 0.823687 | 1.211223e-53 | 1.050414e-50 |
| MsG0480021409.01 | MsG0480022181.01 | 0.818806 | 1.617412e-52 | 1.223005e-49 |
| MsG0480021452.01 | MsG0480022181.01 | 0.816483 | 5.403947e-52 | 3.833677e-49 |
| MsG0480021501.01 | MsG0480022181.01 | 0.814098 | 1.831828e-51 | 1.217825e-48 |
| MsG0480021534.01 | MsG0480022181.01 | 0.815987 | 6.976378e-52 | 4.882731e-49 |
| MsG0480021724.01 | MsG0480022181.01 | 0.800248 | 1.575572e-48 | 7.300955e-46 |
| MsG0480021778.01 | MsG0480022181.01 | 0.803938 | 2.745266e-49 | 1.397503e-46 |
| MsG0480021796.01 | MsG0480022181.01 | 0.801659 | 8.113744e-49 | 3.896394e-46 |
| MsG0480021819.01 | MsG0480022181.01 | 0.812427 | 4.263284e-51 | 2.710016e-48 |
| MsG0480021917.01 | MsG0480022181.01 | 0.813917 | 2.007927e-51 | 1.328377e-48 |
| MsG0480021918.01 | MsG0480022181.01 | 0.826945 | 2.052801e-54 | 1.953502e-51 |
| MsG0480022181.01 | MsG0480022318.01 | 0.848963 | 4.384673e-60 | 8.185515e-57 |
| MsG0480022181.01 | MsG0480022552.01 | 0.807201 | 5.674692e-50 | 3.141302e-47 |
| MsG0480022181.01 | MsG0480022678.01 | 0.804200 | 2.420833e-49 | 1.240560e-46 |
| MsG0480022181.01 | MsG0480022717.01 | 0.806821 | 6.827085e-50 | 3.742227e-47 |
| MsG0480022181.01 | MsG0480022719.01 | 0.801118 | 1.047015e-48 | 4.960126e-46 |
| MsG0480022181.01 | MsG0480022827.01 | 0.804460 | 2.137302e-49 | 1.102614e-46 |
| MsG0480022181.01 | MsG0480022855.01 | 0.808391 | 3.168859e-50 | 1.809729e-47 |
| MsG0480022181.01 | MsG0480023172.01 | 0.801059 | 1.076286e-48 | 5.091378e-46 |
| MsG0480022181.01 | MsG0480023354.01 | 0.820570 | 6.397506e-53 | 5.080331e-50 |
| MsG0480022181.01 | MsG0480023600.01 | 0.833348 | 5.614526e-56 | 6.449017e-53 |
| MsG0480022181.01 | MsG0480023895.01 | 0.816120 | 6.513527e-52 | 4.575464e-49 |
| MsG0480022181.01 | MsG0580024251.01 | 0.814535 | 1.466316e-51 | 9.864958e-49 |
| MsG0480022181.01 | MsG0580024274.01 | 0.802389 | 5.741262e-49 | 2.809029e-46 |
| MsG0480022181.01 | MsG0580024418.01 | 0.823913 | 1.071901e-53 | 9.354665e-51 |
| MsG0480022181.01 | MsG0580024781.01 | 0.835517 | 1.602967e-56 | 1.964779e-53 |
| MsG0480022181.01 | MsG0580024960.01 | 0.801517 | 8.676424e-49 | 4.151815e-46 |
| MsG0480022181.01 | MsG0580025237.01 | 0.809222 | 2.105206e-50 | 1.228962e-47 |
| MsG0480022181.01 | MsG0580025532.01 | 0.800848 | 1.188934e-48 | 5.593980e-46 |
| MsG0480022181.01 | MsG0580025555.01 | 0.801913 | 7.195486e-49 | 3.477902e-46 |
| MsG0480022181.01 | MsG0580025723.01 | 0.815737 | 7.930735e-52 | 5.513264e-49 |
| MsG0480022181.01 | MsG0580027211.01 | 0.812680 | 3.754122e-51 | 2.402157e-48 |
| MsG0480022181.01 | MsG0580027891.01 | 0.805093 | 1.576263e-49 | 8.265734e-47 |
| MsG0480022181.01 | MsG0580029008.01 | 0.803875 | 2.828475e-49 | 1.437527e-46 |
| MsG0480022181.01 | MsG0580029208.01 | 0.800565 | 1.357599e-48 | 6.341727e-46 |
| MsG0480022181.01 | MsG0580029647.01 | 0.817929 | 2.555950e-52 | 1.886638e-49 |
| MsG0480022181.01 | MsG0580029651.01 | 0.824552 | 7.587274e-54 | 6.743009e-51 |
| MsG0480022181.01 | MsG0680030321.01 | 0.829175 | 5.964340e-55 | 6.057701e-52 |
| MsG0480022181.01 | MsG0680031506.01 | 0.827511 | 1.502307e-54 | 1.453395e-51 |
| MsG0480022181.01 | MsG0680033302.01 | 0.845079 | 5.077858e-59 | 8.365668e-56 |
| MsG0480022181.01 | MsG0680034757.01 | 0.809187 | 2.142165e-50 | 1.249379e-47 |
| MsG0480022181.01 | MsG0680034913.01 | 0.818821 | 1.604990e-52 | 1.214122e-49 |
| MsG0480022181.01 | MsG0680035346.01 | 0.802181 | 6.338471e-49 | 3.084506e-46 |
| MsG0480022181.01 | MsG0680035876.01 | 0.800889 | 1.166270e-48 | 5.493214e-46 |
| MsG0480022181.01 | MsG0780036340.01 | 0.807597 | 4.677623e-50 | 2.615962e-47 |
| MsG0480022181.01 | MsG0780036430.01 | 0.815133 | 1.080476e-51 | 7.386903e-49 |
| MsG0480022181.01 | MsG0780036719.01 | 0.801208 | 1.003639e-48 | 4.765240e-46 |
| MsG0480022181.01 | MsG0780036773.01 | 0.818966 | 1.487068e-52 | 1.129619e-49 |
| MsG0480022181.01 | MsG0780036836.01 | 0.846817 | 1.711824e-59 | 2.982754e-56 |
| MsG0480022181.01 | MsG0780037975.01 | 0.802604 | 5.184800e-49 | 2.550516e-46 |
| MsG0480022181.01 | MsG0780038401.01 | 0.805510 | 1.289469e-49 | 6.834294e-47 |
| MsG0480022181.01 | MsG0780038439.01 | 0.821663 | 3.582483e-53 | 2.933022e-50 |
| MsG0480022181.01 | MsG0780038565.01 | 0.806434 | 8.242795e-50 | 4.473417e-47 |
| MsG0480022181.01 | MsG0780038602.01 | 0.815788 | 7.724743e-52 | 5.377520e-49 |
| MsG0480022181.01 | MsG0780038603.01 | 0.823786 | 1.147940e-53 | 9.983049e-51 |
| MsG0480022181.01 | MsG0780039443.01 | 0.827462 | 1.543961e-54 | 1.491658e-51 |
| MsG0480022181.01 | MsG0780039655.01 | 0.821846 | 3.248929e-53 | 2.673936e-50 |
| MsG0480022181.01 | MsG0780039866.01 | 0.813101 | 3.034845e-51 | 1.963636e-48 |
| MsG0480022181.01 | MsG0780040254.01 | 0.807637 | 4.585747e-50 | 2.567409e-47 |
| MsG0480022181.01 | MsG0780041033.01 | 0.815204 | 1.042193e-51 | 7.139011e-49 |
| MsG0480022181.01 | MsG0780041305.01 | 0.852099 | 5.765374e-61 | 1.191818e-57 |
| MsG0480022181.01 | MsG0780041559.01 | 0.802906 | 4.492258e-49 | 2.226959e-46 |
| MsG0480022181.01 | MsG0780041667.01 | 0.841854 | 3.691921e-58 | 5.495555e-55 |
| MsG0480022181.01 | MsG0780041796.01 | 0.800450 | 1.433280e-48 | 6.675687e-46 |
| MsG0480022181.01 | MsG0880042518.01 | 0.823235 | 1.544534e-53 | 1.322293e-50 |
| MsG0480022181.01 | MsG0880042520.01 | 0.801553 | 8.528125e-49 | 4.084506e-46 |
| MsG0480022181.01 | MsG0880042552.01 | 0.808175 | 3.524367e-50 | 2.001366e-47 |
| MsG0480022181.01 | MsG0880042760.01 | 0.805908 | 1.063426e-49 | 5.694572e-47 |
| MsG0480022181.01 | MsG0880043480.01 | 0.805242 | 1.467174e-49 | 7.723036e-47 |
| MsG0480022181.01 | MsG0880043521.01 | 0.806362 | 8.533564e-50 | 4.622775e-47 |
| MsG0480022181.01 | MsG0880044950.01 | 0.839431 | 1.590939e-57 | 2.196698e-54 |
| MsG0480022181.01 | MsG0880045111.01 | 0.811592 | 6.482838e-51 | 4.029082e-48 |
| MsG0480022181.01 | MsG0880045372.01 | 0.827975 | 1.162075e-54 | 1.139642e-51 |
| MsG0480022181.01 | MsG0880045393.01 | 0.807828 | 4.177577e-50 | 2.350519e-47 |
| MsG0480022181.01 | MsG0880045415.01 | 0.822317 | 2.527552e-53 | 2.108291e-50 |
| MsG0480022181.01 | MsG0880045639.01 | 0.800088 | 1.698337e-48 | 7.837926e-46 |
| MsG0480022181.01 | MsG0880046020.01 | 0.800289 | 1.545365e-48 | 7.168670e-46 |
| MsG0480022181.01 | MsG0880046643.01 | 0.807666 | 4.521841e-50 | 2.533510e-47 |
| MsG0480022181.01 | MsG0880046901.01 | 0.800548 | 1.368704e-48 | 6.390791e-46 |
| MsG0480022181.01 | MsG0880047437.01 | 0.827392 | 1.604929e-54 | 1.547540e-51 |
| MsG0480022181.01 | MsG0880047473.01 | 0.802443 | 5.597651e-49 | 2.742359e-46 |
| MsG0480022181.01 | MsG0880047745.01 | 0.841229 | 5.393565e-58 | 7.872817e-55 |
| MsG0380015179.01 | MsG0480022181.01 | 0.810129 | 1.343568e-50 | 8.033506e-48 |
| MsG0380015332.01 | MsG0480022181.01 | 0.811252 | 7.682065e-51 | 4.731981e-48 |
| MsG0380015436.01 | MsG0480022181.01 | 0.865591 | 5.286132e-65 | 1.729316e-61 |
| MsG0380015440.01 | MsG0480022181.01 | 0.807859 | 4.114942e-50 | 2.317113e-47 |
| MsG0380015564.01 | MsG0480022181.01 | 0.813335 | 2.696809e-51 | 1.756200e-48 |
| MsG0380016209.01 | MsG0480022181.01 | 0.806780 | 6.964427e-50 | 3.813374e-47 |
| MsG0380016517.01 | MsG0480022181.01 | 0.818804 | 1.619010e-52 | 1.224143e-49 |
| MsG0380016561.01 | MsG0480022181.01 | 0.803578 | 3.261157e-49 | 1.644803e-46 |
| MsG0380016923.01 | MsG0480022181.01 | 0.830580 | 2.711189e-55 | 2.868143e-52 |
| MsG0380016970.01 | MsG0480022181.01 | 0.828702 | 7.764029e-55 | 7.776415e-52 |
| MsG0380017375.01 | MsG0480022181.01 | 0.802748 | 4.841464e-49 | 2.390466e-46 |
| MsG0280007072.01 | MsG0480022181.01 | 0.832927 | 7.147970e-56 | 8.106585e-53 |
| MsG0280007087.01 | MsG0480022181.01 | 0.814010 | 1.914760e-51 | 1.269985e-48 |
| MsG0280007496.01 | MsG0480022181.01 | 0.829970 | 3.819533e-55 | 3.970202e-52 |
| MsG0280008363.01 | MsG0480022181.01 | 0.847580 | 1.057157e-59 | 1.887603e-56 |
| MsG0280008457.01 | MsG0480022181.01 | 0.838658 | 2.522704e-57 | 3.401752e-54 |
| MsG0280008765.01 | MsG0480022181.01 | 0.811002 | 8.705870e-51 | 5.327970e-48 |
| MsG0280009739.01 | MsG0480022181.01 | 0.836150 | 1.107549e-56 | 1.383773e-53 |
| MsG0280009748.01 | MsG0480022181.01 | 0.807099 | 5.965224e-50 | 3.293188e-47 |
| MsG0280010109.01 | MsG0480022181.01 | 0.809275 | 2.050308e-50 | 1.198609e-47 |
| MsG0280010287.01 | MsG0480022181.01 | 0.850409 | 1.730673e-60 | 3.387001e-57 |
| MsG0280010533.01 | MsG0480022181.01 | 0.826083 | 3.295394e-54 | 3.059352e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022181.01.T01 | MTR_4g083780 | 71.875 | 64 | 11 | 2 | 2 | 64 | 3 | 60 | 4.53e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTGGTTTGGGCCTTTA+TGG | 0.068346 | 4:+69361254 | MsG0480022181.01.T01:CDS |
| GGACACTTTAGAGGGAAAAT+TGG | 0.262444 | 4:+69361194 | MsG0480022181.01.T01:CDS |
| TTGGGCCTAATGTGGAATTT+TGG | 0.281950 | 4:+69361219 | MsG0480022181.01.T01:CDS |
| ATTCTCACTCCAGGTGGTTT+GGG | 0.282275 | 4:+69361245 | MsG0480022181.01.T01:CDS |
| ACTCTTTCTGCTGACGCTTC+TGG | 0.300055 | 4:+69359913 | MsG0480022181.01.T01:CDS |
| GATTCTCACTCCAGGTGGTT+TGG | 0.305473 | 4:+69361244 | MsG0480022181.01.T01:CDS |
| GAGAGACTCGAGAGTGTAAA+AGG | 0.333923 | 4:-69359943 | None:intergenic |
| TTGTAAAAGACCCAATAAAA+AGG | 0.342474 | 4:+69361284 | MsG0480022181.01.T01:CDS |
| GATTGAAATGGACACTTTAG+AGG | 0.380042 | 4:+69361185 | MsG0480022181.01.T01:CDS |
| TTACTATAATTCCTAACTTC+AGG | 0.386426 | 4:+69360390 | MsG0480022181.01.T01:CDS |
| TATTTAGGACATGATTGAAA+TGG | 0.412335 | 4:+69361173 | MsG0480022181.01.T01:intron |
| ACATATACCTTCCTGAAGTT+AGG | 0.445979 | 4:-69360401 | None:intergenic |
| ATCTACCAAAATTCCACATT+AGG | 0.460649 | 4:-69361224 | None:intergenic |
| TTAGAGGGAAAATTGGAGTT+GGG | 0.461347 | 4:+69361201 | MsG0480022181.01.T01:CDS |
| CCATAAAGGCCCAAACCACC+TGG | 0.504845 | 4:-69361254 | None:intergenic |
| TTTAGAGGGAAAATTGGAGT+TGG | 0.516310 | 4:+69361200 | MsG0480022181.01.T01:CDS |
| GCAAATCGTTGACGTTGGAT+CGG | 0.580211 | 4:+69359882 | MsG0480022181.01.T01:CDS |
| AATTGGAGTTGGGCCTAATG+TGG | 0.592160 | 4:+69361211 | MsG0480022181.01.T01:CDS |
| ATTGAAATGGACACTTTAGA+GGG | 0.592478 | 4:+69361186 | MsG0480022181.01.T01:CDS |
| TCGTAGCAAAATCAAAACAA+TGG | 0.601320 | 4:+69359846 | MsG0480022181.01.T01:exon |
| TGGTAGATTCTCACTCCAGG+TGG | 0.605046 | 4:+69361239 | MsG0480022181.01.T01:CDS |
| TATAATTCCTAACTTCAGGA+AGG | 0.606546 | 4:+69360394 | MsG0480022181.01.T01:CDS |
| AGAGAGCAAATCGTTGACGT+TGG | 0.610890 | 4:+69359877 | MsG0480022181.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAGATTAAAATAAAA+AGG | - | Chr4:69361154-69361173 | None:intergenic | 10.0% |
| !!! | ATTTTAATCTTTTGTTATTT+AGG | + | Chr4:69361158-69361177 | MsG0480022181.01.T01:intron | 10.0% |
| !! | AAAAAGTAAGAAGAAAAATT+AGG | - | Chr4:69360132-69360151 | None:intergenic | 15.0% |
| !! | AAAAATAATATATCAGCATA+AGG | - | Chr4:69360562-69360581 | None:intergenic | 15.0% |
| !! | AAAAGAGTAAAAAAATAAAG+AGG | - | Chr4:69360064-69360083 | None:intergenic | 15.0% |
| !! | AAAAGATTAAAATAAAAAGG+TGG | - | Chr4:69361151-69361170 | None:intergenic | 15.0% |
| !! | AAAAGTAAGAAGAAAAATTA+GGG | - | Chr4:69360131-69360150 | None:intergenic | 15.0% |
| !! | AATAAAAAGGAAAAACAAAA+TGG | + | Chr4:69361297-69361316 | MsG0480022181.01.T01:CDS | 15.0% |
| !! | ACTAATTATCACTAATTAAT+TGG | - | Chr4:69360460-69360479 | None:intergenic | 15.0% |
| !! | CTAATTATCACTAATTAATT+GGG | - | Chr4:69360459-69360478 | None:intergenic | 15.0% |
| !! | TAATTATCACTAATTAATTG+GGG | - | Chr4:69360458-69360477 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTTCCTTTTTAT+TGG | - | Chr4:69361298-69361317 | None:intergenic | 15.0% |
| !!! | TAAAAAGATTTAAAGTTGAT+GGG | + | Chr4:69361061-69361080 | MsG0480022181.01.T01:intron | 15.0% |
| !!! | TGATATTTGTTAATTAATTC+CGG | + | Chr4:69360790-69360809 | MsG0480022181.01.T01:intron | 15.0% |
| !!! | TTAAAAAGATTTAAAGTTGA+TGG | + | Chr4:69361060-69361079 | MsG0480022181.01.T01:intron | 15.0% |
| !!! | TTTACAATTTTTTTCCATAA+AGG | - | Chr4:69361271-69361290 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTCCTTTTTATT+GGG | - | Chr4:69361297-69361316 | None:intergenic | 15.0% |
| !! | TAAATTCTGTTATGCTATAA+CGG | + | Chr4:69360954-69360973 | MsG0480022181.01.T01:intron | 20.0% |
| !! | TTGTACAAAATATTGTCAAA+TGG | - | Chr4:69360902-69360921 | None:intergenic | 20.0% |
| !!! | TTATTGTTTCTATGTGAATT+TGG | + | Chr4:69360225-69360244 | MsG0480022181.01.T01:intron | 20.0% |
| !!! | TTGGAGTTATTGTATTTTTA+GGG | + | Chr4:69360244-69360263 | MsG0480022181.01.T01:intron | 20.0% |
| !!! | TTTGGAGTTATTGTATTTTT+AGG | + | Chr4:69360243-69360262 | MsG0480022181.01.T01:intron | 20.0% |
| ! | AAACTTAGGTAATTGGTATT+GGG | + | Chr4:69360492-69360511 | MsG0480022181.01.T01:intron | 25.0% |
| ! | AATGATGTATCAAGAATCAT+GGG | - | Chr4:69361091-69361110 | None:intergenic | 25.0% |
| ! | TGAATGCATTCATGTAAAAT+TGG | + | Chr4:69360847-69360866 | MsG0480022181.01.T01:intron | 25.0% |
| ! | TGCAGTAAAATCAATTTGAA+TGG | - | Chr4:69360629-69360648 | None:intergenic | 25.0% |
| ! | TTACTATAATTCCTAACTTC+AGG | + | Chr4:69360390-69360409 | MsG0480022181.01.T01:CDS | 25.0% |
| ! | TTGTAAAAGACCCAATAAAA+AGG | + | Chr4:69361284-69361303 | MsG0480022181.01.T01:CDS | 25.0% |
| ! | TTTACAGCTTCATCTAATTA+GGG | + | Chr4:69360273-69360292 | MsG0480022181.01.T01:intron | 25.0% |
| !! | AAATTTCTCTCATGTTTTTC+AGG | + | Chr4:69360349-69360368 | MsG0480022181.01.T01:intron | 25.0% |
| !! | AATTTCTCTCATGTTTTTCA+GGG | + | Chr4:69360350-69360369 | MsG0480022181.01.T01:intron | 25.0% |
| !! | TATTTAGGACATGATTGAAA+TGG | + | Chr4:69361173-69361192 | MsG0480022181.01.T01:intron | 25.0% |
| !! | TTTTGTGTCTTTTGTATTGA+AGG | - | Chr4:69359804-69359823 | None:intergenic | 25.0% |
| !!! | TGTTTCTTGTTTTTCAATAC+CGG | + | Chr4:69360167-69360186 | MsG0480022181.01.T01:intron | 25.0% |
| !!! | TTTTTCGAAACTTAGGTAAT+TGG | + | Chr4:69360485-69360504 | MsG0480022181.01.T01:intron | 25.0% |
| AATAAACACACGGAAAAAAG+GGG | - | Chr4:69360005-69360024 | None:intergenic | 30.0% | |
| AATTAATTGGGGAAAGAACA+AGG | - | Chr4:69360447-69360466 | None:intergenic | 30.0% | |
| ACAAGCAGATAAAAAAGCAA+TGG | - | Chr4:69360539-69360558 | None:intergenic | 30.0% | |
| AGGAAAAGTGAATAAACACA+CGG | - | Chr4:69360015-69360034 | None:intergenic | 30.0% | |
| ATACATCATTCTCATATCAC+TGG | + | Chr4:69361101-69361120 | MsG0480022181.01.T01:intron | 30.0% | |
| ATCTACCAAAATTCCACATT+AGG | - | Chr4:69361227-69361246 | None:intergenic | 30.0% | |
| ATTGAAATGGACACTTTAGA+GGG | + | Chr4:69361186-69361205 | MsG0480022181.01.T01:CDS | 30.0% | |
| CAATGTAAGTTATTGAATCC+CGG | - | Chr4:69360189-69360208 | None:intergenic | 30.0% | |
| CTTTACAGCTTCATCTAATT+AGG | + | Chr4:69360272-69360291 | MsG0480022181.01.T01:intron | 30.0% | |
| GAAACTTAGGTAATTGGTAT+TGG | + | Chr4:69360491-69360510 | MsG0480022181.01.T01:intron | 30.0% | |
| GAATAAACACACGGAAAAAA+GGG | - | Chr4:69360006-69360025 | None:intergenic | 30.0% | |
| GAATGATGTATCAAGAATCA+TGG | - | Chr4:69361092-69361111 | None:intergenic | 30.0% | |
| TAATTGAAAAATCGTTCACG+AGG | - | Chr4:69360035-69360054 | None:intergenic | 30.0% | |
| TATAATTCCTAACTTCAGGA+AGG | + | Chr4:69360394-69360413 | MsG0480022181.01.T01:CDS | 30.0% | |
| TATAGTGTAACAGTATAGGA+TGG | + | Chr4:69360596-69360615 | MsG0480022181.01.T01:intron | 30.0% | |
| TCGTAGCAAAATCAAAACAA+TGG | + | Chr4:69359846-69359865 | MsG0480022181.01.T01:exon | 30.0% | |
| TGAATAAACACACGGAAAAA+AGG | - | Chr4:69360007-69360026 | None:intergenic | 30.0% | |
| TGCTTATAGTGTAACAGTAT+AGG | + | Chr4:69360592-69360611 | MsG0480022181.01.T01:intron | 30.0% | |
| TGTATGTTGGAATCAAATCA+CGG | + | Chr4:69360657-69360676 | MsG0480022181.01.T01:intron | 30.0% | |
| TTGGGAATACTCTATGTATT+TGG | + | Chr4:69360510-69360529 | MsG0480022181.01.T01:intron | 30.0% | |
| ! | CTGATATAGCCTTGAATTTA+AGG | - | Chr4:69360879-69360898 | None:intergenic | 30.0% |
| !!! | ACATTCAAGTCACTTTTAAC+CGG | - | Chr4:69360812-69360831 | None:intergenic | 30.0% |
| !!! | GTGTTTCTTTTTCGAAACTT+AGG | + | Chr4:69360478-69360497 | MsG0480022181.01.T01:intron | 30.0% |
| !!! | GTTTCTTGTTTTTCAATACC+GGG | + | Chr4:69360168-69360187 | MsG0480022181.01.T01:intron | 30.0% |
| AAAAGGTGGAGTCAACAATA+TGG | - | Chr4:69361137-69361156 | None:intergenic | 35.0% | |
| ACAAATATCAATTGCATCGC+CGG | - | Chr4:69360780-69360799 | None:intergenic | 35.0% | |
| ACATATACCTTCCTGAAGTT+AGG | - | Chr4:69360404-69360423 | None:intergenic | 35.0% | |
| ATAAACACACGGAAAAAAGG+GGG | - | Chr4:69360004-69360023 | None:intergenic | 35.0% | |
| CGGGATTCAATAACTTACAT+TGG | + | Chr4:69360187-69360206 | MsG0480022181.01.T01:intron | 35.0% | |
| GATTGAAATGGACACTTTAG+AGG | + | Chr4:69361185-69361204 | MsG0480022181.01.T01:CDS | 35.0% | |
| GCGTTCATCATGAATAAAAG+AGG | - | Chr4:69360097-69360116 | None:intergenic | 35.0% | |
| TGGATTGCACCTTAAATTCA+AGG | + | Chr4:69360867-69360886 | MsG0480022181.01.T01:intron | 35.0% | |
| TTAGAGGGAAAATTGGAGTT+GGG | + | Chr4:69361201-69361220 | MsG0480022181.01.T01:CDS | 35.0% | |
| TTTAGAGGGAAAATTGGAGT+TGG | + | Chr4:69361200-69361219 | MsG0480022181.01.T01:CDS | 35.0% | |
| !!! | ATGTTTTTCAGGGAACTACA+AGG | + | Chr4:69360360-69360379 | MsG0480022181.01.T01:intron | 35.0% |
| ATTCTCATATCACTGGATCC+AGG | + | Chr4:69361108-69361127 | MsG0480022181.01.T01:intron | 40.0% | |
| GAGTCAACAATATGGAATCC+TGG | - | Chr4:69361129-69361148 | None:intergenic | 40.0% | |
| GCGTATCACAGAACAAATAG+CGG | + | Chr4:69360925-69360944 | MsG0480022181.01.T01:intron | 40.0% | |
| TAAACACACGGAAAAAAGGG+GGG | - | Chr4:69360003-69360022 | None:intergenic | 40.0% | |
| TAATTGGGGAAAGAACAAGG+AGG | - | Chr4:69360444-69360463 | None:intergenic | 40.0% | |
| TACTCCAACCTCAAAGTCTA+TGG | - | Chr4:69361019-69361038 | None:intergenic | 40.0% | |
| TGATTCCAACATACACGAAG+TGG | - | Chr4:69360652-69360671 | None:intergenic | 40.0% | |
| ! | GGACACTTTAGAGGGAAAAT+TGG | + | Chr4:69361194-69361213 | MsG0480022181.01.T01:CDS | 40.0% |
| ! | GTGTAGCTTTTGCAGAATCA+CGG | + | Chr4:69360709-69360728 | MsG0480022181.01.T01:intron | 40.0% |
| ! | TCTCTCTCTCTCGTATTTTC+TGG | + | Chr4:69359754-69359773 | MsG0480022181.01.T01:five_prime_UTR | 40.0% |
| ! | TTGGGCCTAATGTGGAATTT+TGG | + | Chr4:69361219-69361238 | MsG0480022181.01.T01:CDS | 40.0% |
| ! | TTTTGGTAGATTCTCACTCC+AGG | + | Chr4:69361236-69361255 | MsG0480022181.01.T01:CDS | 40.0% |
| AATTGGAGTTGGGCCTAATG+TGG | + | Chr4:69361211-69361230 | MsG0480022181.01.T01:CDS | 45.0% | |
| AGAGAGCAAATCGTTGACGT+TGG | + | Chr4:69359877-69359896 | MsG0480022181.01.T01:CDS | 45.0% | |
| AGCCGCTATTCAACAACACT+GGG | + | Chr4:69360991-69361010 | MsG0480022181.01.T01:intron | 45.0% | |
| ATTCTCACTCCAGGTGGTTT+GGG | + | Chr4:69361245-69361264 | MsG0480022181.01.T01:CDS | 45.0% | |
| GCAAATCGTTGACGTTGGAT+CGG | + | Chr4:69359882-69359901 | MsG0480022181.01.T01:CDS | 45.0% | |
| TAGCCGCTATTCAACAACAC+TGG | + | Chr4:69360990-69361009 | MsG0480022181.01.T01:intron | 45.0% | |
| ! | CACCCAGTGTTGTTGAATAG+CGG | - | Chr4:69360996-69361015 | None:intergenic | 45.0% |
| ! | GAGAGACTCGAGAGTGTAAA+AGG | - | Chr4:69359946-69359965 | None:intergenic | 45.0% |
| !!! | ACCACGTGCGTTTTGTTTTC+CGG | + | Chr4:69360758-69360777 | MsG0480022181.01.T01:intron | 45.0% |
| ACTCTTTCTGCTGACGCTTC+TGG | + | Chr4:69359913-69359932 | MsG0480022181.01.T01:CDS | 50.0% | |
| CTGCACCACTTCGTGTATGT+TGG | + | Chr4:69360644-69360663 | MsG0480022181.01.T01:intron | 50.0% | |
| GATTCTCACTCCAGGTGGTT+TGG | + | Chr4:69361244-69361263 | MsG0480022181.01.T01:CDS | 50.0% | |
| TGGTAGATTCTCACTCCAGG+TGG | + | Chr4:69361239-69361258 | MsG0480022181.01.T01:CDS | 50.0% | |
| ! | ACTGGGTGCCATAGACTTTG+AGG | + | Chr4:69361008-69361027 | MsG0480022181.01.T01:intron | 50.0% |
| !! | GGTGCCATAGACTTTGAGGT+TGG | + | Chr4:69361012-69361031 | MsG0480022181.01.T01:intron | 50.0% |
| CCATAAAGGCCCAAACCACC+TGG | - | Chr4:69361257-69361276 | None:intergenic | 55.0% | |
| GCCGGAAAACAAAACGCACG+TGG | - | Chr4:69360762-69360781 | None:intergenic | 55.0% | |
| ! | CCAGGTGGTTTGGGCCTTTA+TGG | + | Chr4:69361254-69361273 | MsG0480022181.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 69359682 | 69361323 | 69359682 | ID=MsG0480022181.01;Name=MsG0480022181.01 |
| Chr4 | mRNA | 69359682 | 69361323 | 69359682 | ID=MsG0480022181.01.T01;Parent=MsG0480022181.01;Name=MsG0480022181.01.T01;_AED=0.50;_eAED=0.66;_QI=161|0.25|0.6|1|0|0.2|5|0|108 |
| Chr4 | exon | 69359682 | 69359699 | 69359682 | ID=MsG0480022181.01.T01:exon:8280;Parent=MsG0480022181.01.T01 |
| Chr4 | exon | 69359722 | 69359986 | 69359722 | ID=MsG0480022181.01.T01:exon:8281;Parent=MsG0480022181.01.T01 |
| Chr4 | exon | 69360250 | 69360265 | 69360250 | ID=MsG0480022181.01.T01:exon:8282;Parent=MsG0480022181.01.T01 |
| Chr4 | exon | 69360371 | 69360415 | 69360371 | ID=MsG0480022181.01.T01:exon:8283;Parent=MsG0480022181.01.T01 |
| Chr4 | exon | 69361180 | 69361323 | 69361180 | ID=MsG0480022181.01.T01:exon:8284;Parent=MsG0480022181.01.T01 |
| Chr4 | five_prime_UTR | 69359682 | 69359699 | 69359682 | ID=MsG0480022181.01.T01:five_prime_utr;Parent=MsG0480022181.01.T01 |
| Chr4 | five_prime_UTR | 69359722 | 69359864 | 69359722 | ID=MsG0480022181.01.T01:five_prime_utr;Parent=MsG0480022181.01.T01 |
| Chr4 | CDS | 69359865 | 69359986 | 69359865 | ID=MsG0480022181.01.T01:cds;Parent=MsG0480022181.01.T01 |
| Chr4 | CDS | 69360250 | 69360265 | 69360250 | ID=MsG0480022181.01.T01:cds;Parent=MsG0480022181.01.T01 |
| Chr4 | CDS | 69360371 | 69360415 | 69360371 | ID=MsG0480022181.01.T01:cds;Parent=MsG0480022181.01.T01 |
| Chr4 | CDS | 69361180 | 69361323 | 69361180 | ID=MsG0480022181.01.T01:cds;Parent=MsG0480022181.01.T01 |
| Gene Sequence |
| Protein sequence |
