AlfalfaGEDB | MsG0680034281.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034281.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034281.01.T01	RHN82720.1	94.536	366	20	0	98	463	33	398	0	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034281.01.T01	D7SFH9	54.259	317	132	5	127	436	784	1094	3.82E-120	380

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034281.01.T01	A0A396JWJ9	94.536	366	20	0	98	463	33	398	0.0	718

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180001046.01	MsG0680034281.01	PPI
MsG0180001047.01	MsG0680034281.01	PPI
MsG0180001883.01	MsG0680034281.01	PPI
MsG0180001883.01	MsG0680034281.01	PPI
MsG0180001883.01	MsG0680034281.01	PPI
MsG0180001883.01	MsG0680034281.01	PPI
MsG0180001883.01	MsG0680034281.01	PPI
MsG0180001883.01	MsG0680034281.01	PPI
MsG0180002222.01	MsG0680034281.01	PPI
MsG0180002432.01	MsG0680034281.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0680034281.01.T01	MTR_1g115485	95.833	360	15	0	102	461	314	673	715
MsG0680034281.01.T01	MTR_7g082470	84.511	368	55	2	98	463	282	649	645
MsG0680034281.01.T01	MTR_7g082460	85.994	357	50	0	107	463	308	664	644
MsG0680034281.01.T01	MTR_7g082510	84.831	356	54	0	108	463	305	660	636
MsG0680034281.01.T01	MTR_7g082380	83.102	361	60	1	105	464	17	377	629
MsG0680034281.01.T01	MTR_7g082430	84.463	354	55	0	107	460	273	626	624
MsG0680034281.01.T01	MTR_7g082400	78.711	357	58	2	109	464	61	400	580
MsG0680034281.01.T01	MTR_7g082300	76.068	351	82	2	110	459	511	860	572
MsG0680034281.01.T01	MTR_7g082110	76.056	355	84	1	107	460	493	847	571
MsG0680034281.01.T01	MTR_4g044393	75.371	337	83	0	110	446	495	831	559

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034281.01.T01	AT1G70250	56.325	332	130	6	113	439	431	752	1.38e-128	392
MsG0680034281.01.T01	AT4G18250	54.655	333	133	6	112	436	326	648	2.79e-127	385
MsG0680034281.01.T01	AT5G38280	54.839	341	137	6	119	452	309	639	2.14e-125	379
MsG0680034281.01.T01	AT5G38280	54.839	341	137	6	119	452	309	639	5.18e-125	379
MsG0680034281.01.T01	AT5G39020	58.140	301	121	2	135	434	484	780	7.41e-124	380
MsG0680034281.01.T01	AT1G66920	54.683	331	137	5	135	462	295	615	6.54e-123	371
MsG0680034281.01.T01	AT1G66920	54.683	331	137	5	135	462	287	607	1.27e-122	370
MsG0680034281.01.T01	AT5G38240	53.079	341	128	7	110	439	237	556	4.72e-122	368
MsG0680034281.01.T01	AT5G38260	50.852	352	155	5	110	453	285	626	1.10e-121	369
MsG0680034281.01.T01	AT1G66980	54.259	317	132	5	127	436	767	1077	2.16e-121	380

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Find 113 sgRNAs with CRISPR-Local

Find 844 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCCCCAAGGGGAA+CGG	0.502564	6:-85046211	MsG0680034281.01.T01:intron
AAAGGTTCCCCAAGGGGAAC+GGG	0.354019	6:-85046210	MsG0680034281.01.T01:intron
AAAGTAATAAACGAGTTAAA+GGG	0.377359	6:-85040508	MsG0680034281.01.T01:CDS
AAAGTAATAGAAATGTTGGA+AGG	0.551674	6:-85039785	MsG0680034281.01.T01:CDS
AAATCTGATATATATAGTTA+TGG	0.488656	6:-85040034	MsG0680034281.01.T01:CDS
AAATTAGGCCAAGGAGGATA+TGG	0.353084	6:-85040577	MsG0680034281.01.T01:CDS
AAATTGTTTGACAATCTCAG+AGG	0.704320	6:-85039891	MsG0680034281.01.T01:CDS
AACTCATTCCGAGATAAATT+AGG	0.407588	6:-85040592	MsG0680034281.01.T01:CDS
AACTGATCCAACGATCCTTG+GGG	0.663564	6:+85040364	None:intergenic
AAGAGGAACTATAGGATATA+TGG	0.431553	6:-85040098	MsG0680034281.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAACTTTCCCATGGT+GGG	-	Chr6:85048039-85048058	MsG0680034281.01.T01:intron	30.0%
AAAACGAAAAGTTTCGTTCT+CGG	+	Chr6:85040765-85040784	None:intergenic	30.0%
AAAACTAGAGGATCAAAGTT+AGG	-	Chr6:85043768-85043787	MsG0680034281.01.T01:intron	30.0%
AAACTAGAGGATCAAAGTTA+GGG	-	Chr6:85043769-85043788	MsG0680034281.01.T01:intron	30.0%
AAAGAAGTTTAGAAGCTTGA+AGG	+	Chr6:85043540-85043559	None:intergenic	30.0%
AAATTGTTTGACAATCTCAG+AGG	-	Chr6:85051312-85051331	MsG0680034281.01.T01:intron	30.0%
AACTCATTCCGAGATAAATT+AGG	-	Chr6:85050611-85050630	MsG0680034281.01.T01:intron	30.0%
AACTTTGGTACATAGATTCT+TGG	+	Chr6:85042374-85042393	None:intergenic	30.0%
AAGAGGAACTATAGGATATA+TGG	-	Chr6:85051105-85051124	MsG0680034281.01.T01:intron	30.0%
AAGTGAGTAAACCATAGATT+TGG	-	Chr6:85042595-85042614	MsG0680034281.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	85039658	85051567	85039658	ID=MsG0680034281.01;Name=MsG0680034281.01
Chr6	mRNA	85039658	85051567	85039658	ID=MsG0680034281.01.T01;Parent=MsG0680034281.01;Name=MsG0680034281.01.T01;_AED=0.56;_eAED=0.74;_QI=0\|0\|0\|0.42\|1\|1\|7\|0\|464
Chr6	exon	85051534	85051567	85051534	ID=MsG0680034281.01.T01:exon:30925;Parent=MsG0680034281.01.T01
Chr6	exon	85050935	85051040	85050935	ID=MsG0680034281.01.T01:exon:30924;Parent=MsG0680034281.01.T01
Chr6	exon	85046097	85046228	85046097	ID=MsG0680034281.01.T01:exon:30923;Parent=MsG0680034281.01.T01
Chr6	exon	85040939	85040971	85040939	ID=MsG0680034281.01.T01:exon:30922;Parent=MsG0680034281.01.T01
Chr6	exon	85039658	85040747	85039658	ID=MsG0680034281.01.T01:exon:30921;Parent=MsG0680034281.01.T01
Chr6	CDS	85051534	85051567	85051534	ID=MsG0680034281.01.T01:cds;Parent=MsG0680034281.01.T01
Chr6	CDS	85050935	85051040	85050935	ID=MsG0680034281.01.T01:cds;Parent=MsG0680034281.01.T01
Chr6	CDS	85046097	85046228	85046097	ID=MsG0680034281.01.T01:cds;Parent=MsG0680034281.01.T01
Chr6	CDS	85040939	85040971	85040939	ID=MsG0680034281.01.T01:cds;Parent=MsG0680034281.01.T01
Chr6	CDS	85039658	85040747	85039658	ID=MsG0680034281.01.T01:cds;Parent=MsG0680034281.01.T01

Gene Sequence

>MsG0680034281.01.T01

ATGTTTCAACAAGGGATCGTTCGTTCCGCAGCAGATAATGCTAAGAAGGAACGTTCCGACGGTTCCGGGAAAGATGTGGAAGGTACTCGTATACCCGTAAGTAAGAGTTTGGAAATAACTAAGTATGATCTGAAGTTTCAGTTCCCCAAGGGGAACGGGGTAAGCCGTAAGGGACCCGCACGTTCACTAAGGGAGTCCGGTGCGCTATTGCAAAGCATTTTCACCGGTAGTAAGGGATTAACTTCCGGGGTTACTCCACTCGGAACTAATCCGTTCAAAACGGAAGAGGAAGCTTATTGTGATAGGAGTACATCTAGACAACAAAGTATTTTCAGAAAGAGAAGAAAACTTGTTGACCACAATGTCGAGGTTTTCATGCAAAGTTATGAATCATCTATGCCAAGAAGATATAGTTATAGAGAAATAAAAAGGATCACAAACTCATTCCGAGATAAATTAGGCCAAGGAGGATATGGTGTTGTATACAAAGCAAGTTTACCTGATGGTCGTCCAGTGGCTGTTAAAGTAATAAACGAGTTAAAGGGGGATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACGTGAACATTGTGTCACTTTTAGGCTATTGTTATGAGGTGAACAAAAGAGTACTAATATATGAATTCATGCCCCAAGGATCGTTGGATCAGTTCATCTATAAAAGTGGATTTTCTGAAGCTGTTTGTGATTTTAATTGGAACACTTTGTTCCAAATTGCAATTGGCATTGCTAAAGGACTAGAGTACTTGCATCAAGGATGTAGTTCAAGGATTCTGCATCTTGATGTCAAACCTCAAAACATTCTTTTGGATGAAGACTTTTGCCCAAAAATATCTGATTTTGGACTAGCAAAAATATGCCAAAGGAAGGATAGTGTTGTGTCAATACTTGGTGCAAGAGGAACTATAGGATATATGGCGCCAGAAGTATATAGTAGAGCATTTGGTGGTGTTTCTTACAAATCTGATATATATAGTTATGGCATGTTGATTCTTGAAATGATTGGAGGAAGAAAGAACTATGATACTGGAGGGTTGTGTACTTCAGAAATGTACTTTCCAGACTGGATTTATAAGGATCTTGAACAAGGTAATACTCTTTCAAATTGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAAACCATCGGATAGACCACAGATGAATAAAGTAATAGAAATGTTGGAAGGGCCACTTTCATCGGTGCCATATCCTCCAAAGCCCGTCCTATGTTCTCCTGAAAGCCCACCACTAGAATTGTCAGATATGTCTTCGTCCAATTTGTATGAGACGAATTCAATTACAACGTCAAACTAA

Protein sequence

>MsG0680034281.01.T01

MFQQGIVRSAADNAKKERSDGSGKDVEGTRIPVSKSLEITKYDLKFQFPKGNGVSRKGPARSLRESGALLQSIFTGSKGLTSGVTPLGTNPFKTEEEAYCDRSTSRQQSIFRKRRKLVDHNVEVFMQSYESSMPRRYSYREIKRITNSFRDKLGQGGYGVVYKASLPDGRPVAVKVINELKGDGEEFINEVASISRTSHVNIVSLLGYCYEVNKRVLIYEFMPQGSLDQFIYKSGFSEAVCDFNWNTLFQIAIGIAKGLEYLHQGCSSRILHLDVKPQNILLDEDFCPKISDFGLAKICQRKDSVVSILGARGTIGYMAPEVYSRAFGGVSYKSDIYSYGMLILEMIGGRKNYDTGGLCTSEMYFPDWIYKDLEQGNTLSNCLTISEEENDMVRKITLVSLWCIQTKPSDRPQMNKVIEMLEGPLSSVPYPPKPVLCSPESPPLELSDMSSSNLYETNSITTSN*