AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1220390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220390 MtrunA17_Chr4g0071301 91.768 328 18 4 1 320 7 333 0.0 520
Msa1220390 MtrunA17_Chr2g0299081 45.897 329 131 14 1 320 6 296 5.87e-47 160
Msa1220390 MtrunA17_Chr1g0151461 44.667 150 58 6 122 249 108 254 8.32e-26 104
Msa1220390 MtrunA17_Chr4g0068031 33.784 148 72 4 172 319 22 143 2.73e-17 77.4
Msa1220390 MtrunA17_Chr7g0271861 75.000 36 9 0 180 215 22 57 1.66e-14 69.3
Msa1220390 MtrunA17_Chr5g0404131 53.448 58 27 0 159 216 171 228 3.03e-14 72.0
Msa1220390 MtrunA17_Chr8g0373231 70.270 37 11 0 180 216 125 161 1.42e-12 66.2
Msa1220390 MtrunA17_Chr1g0213161 39.506 81 42 2 174 249 146 224 7.60e-12 64.3
Msa1220390 MtrunA17_Chr2g0326771 46.377 69 36 1 148 215 183 251 3.15e-11 63.2
Msa1220390 MtrunA17_Chr5g0404981 40.244 82 44 2 180 258 300 379 3.98e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220390 AT4G26150.1 42.105 247 117 6 91 320 115 352 1.66e-38 140
Msa1220390 AT5G56860.1 35.938 256 107 9 14 213 9 263 1.47e-22 97.4
Msa1220390 AT5G49300.1 36.424 151 57 4 169 319 27 138 7.04e-18 79.3
Msa1220390 AT5G26930.1 75.610 41 10 0 177 217 23 63 4.08e-17 76.6
Msa1220390 AT3G06740.1 37.778 135 51 5 182 316 43 144 1.59e-15 73.2
Msa1220390 AT4G36620.1 50.769 65 25 1 180 237 75 139 7.90e-15 72.8
Msa1220390 AT3G50870.1 63.265 49 17 1 180 227 152 200 3.53e-14 72.4
Msa1220390 AT3G16870.1 70.000 40 12 0 178 217 40 79 9.19e-14 69.3
Msa1220390 AT4G16141.1 67.500 40 13 0 178 217 35 74 1.76e-13 68.6
Msa1220390 AT2G18380.1 66.667 45 14 1 176 219 88 132 2.16e-13 68.6
Msa1220390 AT1G08010.2 39.773 88 50 2 172 259 212 296 5.97e-13 68.6
Msa1220390 AT1G08010.1 39.773 88 50 2 172 259 212 296 5.97e-13 68.6
Msa1220390 AT1G08010.3 39.773 88 50 2 172 259 212 296 5.97e-13 68.6
Msa1220390 AT1G08000.2 38.636 88 50 2 172 259 210 293 2.93e-12 66.6
Msa1220390 AT1G08000.1 38.636 88 50 2 172 259 210 293 2.93e-12 66.6

Find 88 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTCATTGGTTCAATTTA+AGG 0.134485 8_1:-83531073 Msa1220390:three_prime_UTR
GCAATAATTATTCAACTATT+AGG 0.137638 8_1:-83531945 Msa1220390:CDS
TGAACAATCAAACTCAATTT+TGG 0.139942 8_1:+83531291 None:intergenic
ATTAAGCTTGAGTGAGAATT+TGG 0.175716 8_1:-83531182 Msa1220390:CDS
CTTCTCATGGCGTTATCTTA+TGG 0.189112 8_1:-83531115 Msa1220390:CDS
TGAATTTGATTAATGGTTTA+TGG 0.211015 8_1:-83530977 Msa1220390:three_prime_UTR
GTTAGTTTGAATTTGATTAA+TGG 0.257774 8_1:-83530984 Msa1220390:three_prime_UTR
GAAAATGAAGAAGAAGAATT+TGG 0.264622 8_1:+83532510 None:intergenic
TCTATCTATCTATCTTAATT+AGG 0.276848 8_1:-83531013 Msa1220390:three_prime_UTR
GTTTATGGTGTACGAGAATA+AGG 0.285758 8_1:-83530962 Msa1220390:three_prime_UTR
GCTGCTGCAGCATCGGCAAT+TGG 0.307111 8_1:-83531382 Msa1220390:CDS
CAATAATTATTCAACTATTA+GGG 0.315780 8_1:-83531944 Msa1220390:CDS
GAAATGATGATTGGAAATTA+AGG 0.328216 8_1:-83530921 Msa1220390:three_prime_UTR
TAATCCTCTTTATATATTAG+TGG 0.329381 8_1:-83532734 Msa1220390:five_prime_UTR
CATGGTTGAGCTTAGTTCAT+TGG 0.347796 8_1:-83531085 Msa1220390:exon
TGATCTTGATTAAGATCAAT+AGG 0.353074 8_1:+83532552 None:intergenic
ATCTATCTTAATTAGGAGTT+AGG 0.354994 8_1:-83531006 Msa1220390:three_prime_UTR
GGATTAAGAGAGGGAGAGAA+TGG 0.356145 8_1:+83532751 None:intergenic
TTGCAGCCTCTCTCTCATCC+TGG 0.357986 8_1:+83531140 None:intergenic
GTTAGTTATGAAATGATGAT+TGG 0.359941 8_1:-83530930 Msa1220390:three_prime_UTR
TGCAGCCTCTCTCTCATCCT+GGG 0.415909 8_1:+83531141 None:intergenic
ATGTATACCTTTGGGCCTCT+TGG 0.416802 8_1:+83531874 None:intergenic
CATGTGGTAAGTTGTTTGTT+TGG 0.417311 8_1:+83532418 None:intergenic
TTAAGCTTGAGTGAGAATTT+GGG 0.418107 8_1:-83531181 Msa1220390:CDS
ACACCACTAAGACCCCTCTA+TGG 0.423028 8_1:-83531906 Msa1220390:CDS
CTTGATCTTGTGAGTCTAAG+AGG 0.434136 8_1:+83532463 None:intergenic
AAGGAAGGCAAGACGTGCTC+TGG 0.435345 8_1:-83531407 Msa1220390:CDS
CCTCCATAGAGGGGTCTTAG+TGG 0.441426 8_1:+83531903 None:intergenic
CACTATATGACGAGTAGGCC+TGG 0.449445 8_1:-83532809 None:intergenic
ATAAGGTGGTGGTATCATAT+TGG 0.451686 8_1:+83532593 None:intergenic
GATGATGGTTTCTGATCAAA+CGG 0.456924 8_1:-83532058 Msa1220390:CDS
TTGTCCACTAATATATAAAG+AGG 0.459438 8_1:+83532730 None:intergenic
GATTAAGAGAGGGAGAGAAT+GGG 0.467292 8_1:+83532752 None:intergenic
TTGGTCCACTCCTCCATAGA+GGG 0.468086 8_1:+83531893 None:intergenic
AAAATCACACTACCTTCATC+TGG 0.475551 8_1:+83530859 None:intergenic
TTTGTTTGGCAGTAATAAGA+TGG 0.481929 8_1:+83532432 None:intergenic
AAGAAGAATTTGGACTAGAA+AGG 0.497380 8_1:+83532520 None:intergenic
TGAATCAGTGCAAGCAAAGT+AGG 0.497607 8_1:+83532660 None:intergenic
ATTTAAGGATATTGTTCACT+AGG 0.497726 8_1:-83531058 Msa1220390:three_prime_UTR
TTATCTTATGGATTAGTCCA+TGG 0.502722 8_1:-83531103 Msa1220390:CDS
ATATTCACTCAAGTGGATCA+TGG 0.512325 8_1:-83532248 Msa1220390:CDS
GAGAATAATGAAGAAGATGA+TGG 0.517661 8_1:-83532073 Msa1220390:CDS
TCTGGCTGCTGCTGCAGCAT+CGG 0.517772 8_1:-83531389 Msa1220390:CDS
CTTGGTCCACTCCTCCATAG+AGG 0.517925 8_1:+83531892 None:intergenic
TGATCTTAATTAGGTTGAGA+AGG 0.524769 8_1:-83532274 Msa1220390:intron
TATAGACACAAAATAATCAA+AGG 0.534947 8_1:+83532626 None:intergenic
TACTTTACCTCTTGATCATG+TGG 0.541831 8_1:+83532402 None:intergenic
AACACAAGCTGACAATTCGT+TGG 0.542076 8_1:-83532185 Msa1220390:CDS
AAGGTTAATATTCACTCAAG+TGG 0.542101 8_1:-83532255 Msa1220390:CDS
ATGATTGGAAATTAAGGTGA+AGG 0.542569 8_1:-83530915 Msa1220390:three_prime_UTR
GGTGGTATCATATTGGATGA+TGG 0.543870 8_1:+83532600 None:intergenic
TATATGCAACTGAAATGAAA+CGG 0.545478 8_1:+83532687 None:intergenic
TATATAAAGAGGATTAAGAG+AGG 0.556090 8_1:+83532741 None:intergenic
CAGTCACTTTGCAACGCATG+TGG 0.556816 8_1:-83531439 Msa1220390:CDS
AATTTGGACTAGAAAGGTCA+TGG 0.556899 8_1:+83532526 None:intergenic
CAACTTACCACATGATCAAG+AGG 0.559110 8_1:-83532409 Msa1220390:intron
ATAGACACAAAATAATCAAA+GGG 0.563453 8_1:+83532627 None:intergenic
GCAGCCTCTCTCTCATCCTG+GGG 0.567150 8_1:+83531142 None:intergenic
TGTGGCAACATGTCTACTCC+AGG 0.569731 8_1:+83532791 None:intergenic
ATATAAAGAGGATTAAGAGA+GGG 0.569780 8_1:+83532742 None:intergenic
AGAGGCTGCAATCCTTCTCA+TGG 0.574547 8_1:-83531128 Msa1220390:CDS
ATGATGGTTTCTGATCAAAC+GGG 0.587005 8_1:-83532057 Msa1220390:CDS
TAAGAAATAGATGAACGAGA+TGG 0.587918 8_1:+83530737 None:intergenic
GCATCGTTGTAACCAGATGA+AGG 0.588439 8_1:-83530871 Msa1220390:three_prime_UTR
GGATCATCACAAGATATATG+TGG 0.588754 8_1:+83532773 None:intergenic
ATGTGGGATTAGACAAAGGA+AGG 0.591436 8_1:-83531422 Msa1220390:CDS
CTGCTATTATCTGTTCCTTG+TGG 0.602551 8_1:+83531970 None:intergenic
TGATCATGAGGATGGTACTT+CGG 0.612710 8_1:-83532118 Msa1220390:CDS
CAAGAAGCTGATCATGAGGA+TGG 0.614482 8_1:-83532126 Msa1220390:CDS
AGGATGGTACTTCGGTGAAG+TGG 0.614786 8_1:-83532110 Msa1220390:CDS
TTGATCTTGTGAGTCTAAGA+GGG 0.615407 8_1:+83532464 None:intergenic
CATAAGATAACGCCATGAGA+AGG 0.615895 8_1:+83531116 None:intergenic
TAATCAAGAAGCTGATCATG+AGG 0.617008 8_1:-83532130 Msa1220390:CDS
GAGTGGACCAAGAGGCCCAA+AGG 0.618470 8_1:-83531881 Msa1220390:intron
CAATGAACTAAGCTCAACCA+TGG 0.619076 8_1:+83531086 None:intergenic
TCTGTTCCTTGTGGTGACAG+TGG 0.621928 8_1:+83531979 None:intergenic
ATGACGGACGAAGATAGATA+AGG 0.632473 8_1:+83532576 None:intergenic
ATTAAGATCAATAGGCATGA+CGG 0.633382 8_1:+83532560 None:intergenic
TGGTCCACTCCTCCATAGAG+GGG 0.635988 8_1:+83531894 None:intergenic
AAGACCCCTCTATGGAGGAG+TGG 0.638844 8_1:-83531898 Msa1220390:CDS
GACGAAGATAGATAAGGTGG+TGG 0.639273 8_1:+83532582 None:intergenic
CCACTAAGACCCCTCTATGG+AGG 0.641407 8_1:-83531903 Msa1220390:CDS
AGTCACTTTGCAACGCATGT+GGG 0.651862 8_1:-83531438 Msa1220390:CDS
AAGCAACCACTGTCACCACA+AGG 0.654177 8_1:-83531985 Msa1220390:CDS
ACGGACGAAGATAGATAAGG+TGG 0.673417 8_1:+83532579 None:intergenic
ACGCATGTGGGATTAGACAA+AGG 0.678808 8_1:-83531426 Msa1220390:CDS
CAGCCTCTCTCTCATCCTGG+GGG 0.685188 8_1:+83531143 None:intergenic
CTATGGAGGAGTGGACCAAG+AGG 0.688009 8_1:-83531889 Msa1220390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTATTTTTTATAAA+GGG + chr8_1:83531659-83531678 None:intergenic 0.0%
!!! ATTAATTTTATTTTTTATAA+AGG + chr8_1:83531660-83531679 None:intergenic 0.0%
!!! TTAATTTTATTTTTTATAAA+GGG + chr8_1:83531659-83531678 None:intergenic 0.0%
!!! ATTAATTTTATTTTTTATAA+AGG + chr8_1:83531660-83531679 None:intergenic 0.0%
!! AAATTAATAAAGTATAGATT+TGG - chr8_1:83531672-83531691 Msa1220390:intron 10.0%
!! AAATTAATAAAGTATAGATT+TGG - chr8_1:83531672-83531691 Msa1220390:intron 10.0%
!! ACATCATCAAATTAATTAAA+GGG + chr8_1:83531197-83531216 None:intergenic 15.0%
!! CAATAATTATTCAACTATTA+GGG - chr8_1:83531546-83531565 Msa1220390:intron 15.0%
!!! ATTTTATTTTTTATAAAGGG+TGG + chr8_1:83531656-83531675 None:intergenic 15.0%
!! AAAATGTTTATTTATTTGTC+AGG - chr8_1:83531807-83531826 Msa1220390:intron 15.0%
!!! TAAGAAAATTTTCACTTTTT+TGG - chr8_1:83531867-83531886 Msa1220390:intron 15.0%
!!! TTATTTTCTTTTATAATAGG+TGG - chr8_1:83532655-83532674 Msa1220390:five_prime_UTR 15.0%
!!! TATTTTCTTTTATAATAGGT+GGG - chr8_1:83532656-83532675 Msa1220390:five_prime_UTR 15.0%
!! TATTTGAAAAAAAAATCTCA+AGG - chr8_1:83532777-83532796 Msa1220390:five_prime_UTR 15.0%
!! ACATCATCAAATTAATTAAA+GGG + chr8_1:83531197-83531216 None:intergenic 15.0%
!! CAATAATTATTCAACTATTA+GGG - chr8_1:83531546-83531565 Msa1220390:intron 15.0%
!!! ATTTTATTTTTTATAAAGGG+TGG + chr8_1:83531656-83531675 None:intergenic 15.0%
!! AAAATGTTTATTTATTTGTC+AGG - chr8_1:83531807-83531826 Msa1220390:intron 15.0%
!!! TAAGAAAATTTTCACTTTTT+TGG - chr8_1:83531867-83531886 Msa1220390:intron 15.0%
!!! TTATTTTCTTTTATAATAGG+TGG - chr8_1:83532655-83532674 Msa1220390:five_prime_UTR 15.0%
!!! TATTTTCTTTTATAATAGGT+GGG - chr8_1:83532656-83532675 Msa1220390:five_prime_UTR 15.0%
!! TATTTGAAAAAAAAATCTCA+AGG - chr8_1:83532777-83532796 Msa1220390:five_prime_UTR 15.0%
!! TAATCCTCTTTATATATTAG+TGG - chr8_1:83530756-83530775 Msa1220390:three_prime_UTR 20.0%
!! ATAGACACAAAATAATCAAA+GGG + chr8_1:83530866-83530885 None:intergenic 20.0%
!! TATAGACACAAAATAATCAA+AGG + chr8_1:83530867-83530886 None:intergenic 20.0%
!! CATCATCAAATTAATTAAAG+GGG + chr8_1:83531196-83531215 None:intergenic 20.0%
!! CACATCATCAAATTAATTAA+AGG + chr8_1:83531198-83531217 None:intergenic 20.0%
!! GCAATAATTATTCAACTATT+AGG - chr8_1:83531545-83531564 Msa1220390:intron 20.0%
!! TCATATATATGTATACCTTT+GGG + chr8_1:83531627-83531646 None:intergenic 20.0%
!! ATCATATATATGTATACCTT+TGG + chr8_1:83531628-83531647 None:intergenic 20.0%
!! GTTGAATTGAATCTTTAATT+TGG + chr8_1:83531714-83531733 None:intergenic 20.0%
!!! AATACAAAGTGATTGTTTTA+GGG + chr8_1:83531736-83531755 None:intergenic 20.0%
!!! TAATACAAAGTGATTGTTTT+AGG + chr8_1:83531737-83531756 None:intergenic 20.0%
!! TTATAATTACGAATCAAACT+CGG - chr8_1:83531762-83531781 Msa1220390:intron 20.0%
!!! TTTAGAACGTTGTAAATTTA+GGG + chr8_1:83531790-83531809 None:intergenic 20.0%
!!! TTTTAGAACGTTGTAAATTT+AGG + chr8_1:83531791-83531810 None:intergenic 20.0%
!!! TATTTTGCTAATAACTTTGA+TGG - chr8_1:83532018-83532037 Msa1220390:CDS 20.0%
!! TCTATCTATCTATCTTAATT+AGG - chr8_1:83532477-83532496 Msa1220390:CDS 20.0%
!!! GTTAGTTTGAATTTGATTAA+TGG - chr8_1:83532506-83532525 Msa1220390:CDS 20.0%
!! TGAATTTGATTAATGGTTTA+TGG - chr8_1:83532513-83532532 Msa1220390:CDS 20.0%
!! TAATCCTCTTTATATATTAG+TGG - chr8_1:83530756-83530775 Msa1220390:three_prime_UTR 20.0%
!! ATAGACACAAAATAATCAAA+GGG + chr8_1:83530866-83530885 None:intergenic 20.0%
!! TATAGACACAAAATAATCAA+AGG + chr8_1:83530867-83530886 None:intergenic 20.0%
!! CATCATCAAATTAATTAAAG+GGG + chr8_1:83531196-83531215 None:intergenic 20.0%
!! CACATCATCAAATTAATTAA+AGG + chr8_1:83531198-83531217 None:intergenic 20.0%
!! GCAATAATTATTCAACTATT+AGG - chr8_1:83531545-83531564 Msa1220390:intron 20.0%
!! TCATATATATGTATACCTTT+GGG + chr8_1:83531627-83531646 None:intergenic 20.0%
!! ATCATATATATGTATACCTT+TGG + chr8_1:83531628-83531647 None:intergenic 20.0%
!! GTTGAATTGAATCTTTAATT+TGG + chr8_1:83531714-83531733 None:intergenic 20.0%
!!! AATACAAAGTGATTGTTTTA+GGG + chr8_1:83531736-83531755 None:intergenic 20.0%
!!! TAATACAAAGTGATTGTTTT+AGG + chr8_1:83531737-83531756 None:intergenic 20.0%
!! TTATAATTACGAATCAAACT+CGG - chr8_1:83531762-83531781 Msa1220390:intron 20.0%
!!! TTTAGAACGTTGTAAATTTA+GGG + chr8_1:83531790-83531809 None:intergenic 20.0%
!!! TTTTAGAACGTTGTAAATTT+AGG + chr8_1:83531791-83531810 None:intergenic 20.0%
!!! TATTTTGCTAATAACTTTGA+TGG - chr8_1:83532018-83532037 Msa1220390:CDS 20.0%
!! TCTATCTATCTATCTTAATT+AGG - chr8_1:83532477-83532496 Msa1220390:CDS 20.0%
!!! GTTAGTTTGAATTTGATTAA+TGG - chr8_1:83532506-83532525 Msa1220390:CDS 20.0%
!! TGAATTTGATTAATGGTTTA+TGG - chr8_1:83532513-83532532 Msa1220390:CDS 20.0%
! ATATAAAGAGGATTAAGAGA+GGG + chr8_1:83530751-83530770 None:intergenic 25.0%
! TATATAAAGAGGATTAAGAG+AGG + chr8_1:83530752-83530771 None:intergenic 25.0%
! TTGTCCACTAATATATAAAG+AGG + chr8_1:83530763-83530782 None:intergenic 25.0%
! TATATGCAACTGAAATGAAA+CGG + chr8_1:83530806-83530825 None:intergenic 25.0%
! TGATCTTGATTAAGATCAAT+AGG + chr8_1:83530941-83530960 None:intergenic 25.0%
! GAAAATGAAGAAGAAGAATT+TGG + chr8_1:83530983-83531002 None:intergenic 25.0%
! AATTAATTAAAGGGGATCAA+AGG + chr8_1:83531188-83531207 None:intergenic 25.0%
!!! TTGATGATGTGATCTTAATT+AGG - chr8_1:83531207-83531226 Msa1220390:CDS 25.0%
!!! GAATTGAATCTTTAATTTGG+AGG + chr8_1:83531711-83531730 None:intergenic 25.0%
!!! AATTTTCTTACATTTGAGAC+CGG + chr8_1:83531857-83531876 None:intergenic 25.0%
!!! TATTAGTATTAGTGCTACTT+AGG - chr8_1:83531964-83531983 Msa1220390:CDS 25.0%
!! TGAACAATCAAACTCAATTT+TGG + chr8_1:83532202-83532221 None:intergenic 25.0%
!!! AAAAGAGTTTATCACTTTTG+AGG - chr8_1:83532278-83532297 Msa1220390:intron 25.0%
!!! TAGTTCATTGGTTCAATTTA+AGG - chr8_1:83532417-83532436 Msa1220390:CDS 25.0%
! ATTTAAGGATATTGTTCACT+AGG - chr8_1:83532432-83532451 Msa1220390:CDS 25.0%
! ATCTATCTTAATTAGGAGTT+AGG - chr8_1:83532484-83532503 Msa1220390:CDS 25.0%
! GTTAGTTATGAAATGATGAT+TGG - chr8_1:83532560-83532579 Msa1220390:CDS 25.0%
! GAAATGATGATTGGAAATTA+AGG - chr8_1:83532569-83532588 Msa1220390:CDS 25.0%
! ATATAAAGAGGATTAAGAGA+GGG + chr8_1:83530751-83530770 None:intergenic 25.0%
! TATATAAAGAGGATTAAGAG+AGG + chr8_1:83530752-83530771 None:intergenic 25.0%
! TTGTCCACTAATATATAAAG+AGG + chr8_1:83530763-83530782 None:intergenic 25.0%
! TATATGCAACTGAAATGAAA+CGG + chr8_1:83530806-83530825 None:intergenic 25.0%
! TGATCTTGATTAAGATCAAT+AGG + chr8_1:83530941-83530960 None:intergenic 25.0%
! GAAAATGAAGAAGAAGAATT+TGG + chr8_1:83530983-83531002 None:intergenic 25.0%
! AATTAATTAAAGGGGATCAA+AGG + chr8_1:83531188-83531207 None:intergenic 25.0%
!!! TTGATGATGTGATCTTAATT+AGG - chr8_1:83531207-83531226 Msa1220390:CDS 25.0%
!!! GAATTGAATCTTTAATTTGG+AGG + chr8_1:83531711-83531730 None:intergenic 25.0%
!!! AATTTTCTTACATTTGAGAC+CGG + chr8_1:83531857-83531876 None:intergenic 25.0%
!!! TATTAGTATTAGTGCTACTT+AGG - chr8_1:83531964-83531983 Msa1220390:CDS 25.0%
!! TGAACAATCAAACTCAATTT+TGG + chr8_1:83532202-83532221 None:intergenic 25.0%
!!! AAAAGAGTTTATCACTTTTG+AGG - chr8_1:83532278-83532297 Msa1220390:intron 25.0%
!!! TAGTTCATTGGTTCAATTTA+AGG - chr8_1:83532417-83532436 Msa1220390:CDS 25.0%
! ATTTAAGGATATTGTTCACT+AGG - chr8_1:83532432-83532451 Msa1220390:CDS 25.0%
! ATCTATCTTAATTAGGAGTT+AGG - chr8_1:83532484-83532503 Msa1220390:CDS 25.0%
! GTTAGTTATGAAATGATGAT+TGG - chr8_1:83532560-83532579 Msa1220390:CDS 25.0%
! GAAATGATGATTGGAAATTA+AGG - chr8_1:83532569-83532588 Msa1220390:CDS 25.0%
ATTAAGATCAATAGGCATGA+CGG + chr8_1:83530933-83530952 None:intergenic 30.0%
! AAGAAGAATTTGGACTAGAA+AGG + chr8_1:83530973-83530992 None:intergenic 30.0%
TTTGTTTGGCAGTAATAAGA+TGG + chr8_1:83531061-83531080 None:intergenic 30.0%
!! TGATCTTAATTAGGTTGAGA+AGG - chr8_1:83531216-83531235 Msa1220390:CDS 30.0%
AAGGTTAATATTCACTCAAG+TGG - chr8_1:83531235-83531254 Msa1220390:CDS 30.0%
!!! GTTTAGTCTTGTAGTTTTCA+TGG + chr8_1:83531288-83531307 None:intergenic 30.0%
GAGAATAATGAAGAAGATGA+TGG - chr8_1:83531417-83531436 Msa1220390:CDS 30.0%
!! CTTTAATTTGGAGGTTTCTA+GGG + chr8_1:83531702-83531721 None:intergenic 30.0%
!! TCTTTAATTTGGAGGTTTCT+AGG + chr8_1:83531703-83531722 None:intergenic 30.0%
!!! TCTTTTCTAGTTTGATGAGA+TGG + chr8_1:83532264-83532283 None:intergenic 30.0%
ATTAAGCTTGAGTGAGAATT+TGG - chr8_1:83532308-83532327 Msa1220390:intron 30.0%
TTAAGCTTGAGTGAGAATTT+GGG - chr8_1:83532309-83532328 Msa1220390:intron 30.0%
!! TTATCTTATGGATTAGTCCA+TGG - chr8_1:83532387-83532406 Msa1220390:intron 30.0%
ATGATTGGAAATTAAGGTGA+AGG - chr8_1:83532575-83532594 Msa1220390:CDS 30.0%
ATTAAGGTGAAGGACAAAAA+AGG - chr8_1:83532585-83532604 Msa1220390:CDS 30.0%
TAAGAAATAGATGAACGAGA+TGG + chr8_1:83532756-83532775 None:intergenic 30.0%
ATTAAGATCAATAGGCATGA+CGG + chr8_1:83530933-83530952 None:intergenic 30.0%
! AAGAAGAATTTGGACTAGAA+AGG + chr8_1:83530973-83530992 None:intergenic 30.0%
TTTGTTTGGCAGTAATAAGA+TGG + chr8_1:83531061-83531080 None:intergenic 30.0%
!! TGATCTTAATTAGGTTGAGA+AGG - chr8_1:83531216-83531235 Msa1220390:CDS 30.0%
AAGGTTAATATTCACTCAAG+TGG - chr8_1:83531235-83531254 Msa1220390:CDS 30.0%
!!! GTTTAGTCTTGTAGTTTTCA+TGG + chr8_1:83531288-83531307 None:intergenic 30.0%
GAGAATAATGAAGAAGATGA+TGG - chr8_1:83531417-83531436 Msa1220390:CDS 30.0%
!! CTTTAATTTGGAGGTTTCTA+GGG + chr8_1:83531702-83531721 None:intergenic 30.0%
!! TCTTTAATTTGGAGGTTTCT+AGG + chr8_1:83531703-83531722 None:intergenic 30.0%
!!! TCTTTTCTAGTTTGATGAGA+TGG + chr8_1:83532264-83532283 None:intergenic 30.0%
ATTAAGCTTGAGTGAGAATT+TGG - chr8_1:83532308-83532327 Msa1220390:intron 30.0%
TTAAGCTTGAGTGAGAATTT+GGG - chr8_1:83532309-83532328 Msa1220390:intron 30.0%
!! TTATCTTATGGATTAGTCCA+TGG - chr8_1:83532387-83532406 Msa1220390:intron 30.0%
ATGATTGGAAATTAAGGTGA+AGG - chr8_1:83532575-83532594 Msa1220390:CDS 30.0%
ATTAAGGTGAAGGACAAAAA+AGG - chr8_1:83532585-83532604 Msa1220390:CDS 30.0%
TAAGAAATAGATGAACGAGA+TGG + chr8_1:83532756-83532775 None:intergenic 30.0%
GGATCATCACAAGATATATG+TGG + chr8_1:83530720-83530739 None:intergenic 35.0%
! ATAAGGTGGTGGTATCATAT+TGG + chr8_1:83530900-83530919 None:intergenic 35.0%
! AATTTGGACTAGAAAGGTCA+TGG + chr8_1:83530967-83530986 None:intergenic 35.0%
TTGATCTTGTGAGTCTAAGA+GGG + chr8_1:83531029-83531048 None:intergenic 35.0%
CATGTGGTAAGTTGTTTGTT+TGG + chr8_1:83531075-83531094 None:intergenic 35.0%
TACTTTACCTCTTGATCATG+TGG + chr8_1:83531091-83531110 None:intergenic 35.0%
TAATTAAAGGGGATCAAAGG+TGG + chr8_1:83531185-83531204 None:intergenic 35.0%
ATATTCACTCAAGTGGATCA+TGG - chr8_1:83531242-83531261 Msa1220390:CDS 35.0%
TAATCAAGAAGCTGATCATG+AGG - chr8_1:83531360-83531379 Msa1220390:CDS 35.0%
! GATGATGGTTTCTGATCAAA+CGG - chr8_1:83531432-83531451 Msa1220390:CDS 35.0%
ATGATGGTTTCTGATCAAAC+GGG - chr8_1:83531433-83531452 Msa1220390:CDS 35.0%
!! ACTTTTGATTATACTCCCTC+CGG - chr8_1:83531835-83531854 Msa1220390:intron 35.0%
GTTTATGGTGTACGAGAATA+AGG - chr8_1:83532528-83532547 Msa1220390:CDS 35.0%
AAAATCACACTACCTTCATC+TGG + chr8_1:83532634-83532653 None:intergenic 35.0%
GGATCATCACAAGATATATG+TGG + chr8_1:83530720-83530739 None:intergenic 35.0%
! ATAAGGTGGTGGTATCATAT+TGG + chr8_1:83530900-83530919 None:intergenic 35.0%
! AATTTGGACTAGAAAGGTCA+TGG + chr8_1:83530967-83530986 None:intergenic 35.0%
TTGATCTTGTGAGTCTAAGA+GGG + chr8_1:83531029-83531048 None:intergenic 35.0%
CATGTGGTAAGTTGTTTGTT+TGG + chr8_1:83531075-83531094 None:intergenic 35.0%
TACTTTACCTCTTGATCATG+TGG + chr8_1:83531091-83531110 None:intergenic 35.0%
TAATTAAAGGGGATCAAAGG+TGG + chr8_1:83531185-83531204 None:intergenic 35.0%
ATATTCACTCAAGTGGATCA+TGG - chr8_1:83531242-83531261 Msa1220390:CDS 35.0%
TAATCAAGAAGCTGATCATG+AGG - chr8_1:83531360-83531379 Msa1220390:CDS 35.0%
! GATGATGGTTTCTGATCAAA+CGG - chr8_1:83531432-83531451 Msa1220390:CDS 35.0%
ATGATGGTTTCTGATCAAAC+GGG - chr8_1:83531433-83531452 Msa1220390:CDS 35.0%
!! ACTTTTGATTATACTCCCTC+CGG - chr8_1:83531835-83531854 Msa1220390:intron 35.0%
GTTTATGGTGTACGAGAATA+AGG - chr8_1:83532528-83532547 Msa1220390:CDS 35.0%
AAAATCACACTACCTTCATC+TGG + chr8_1:83532634-83532653 None:intergenic 35.0%
GATTAAGAGAGGGAGAGAAT+GGG + chr8_1:83530741-83530760 None:intergenic 40.0%
TGAATCAGTGCAAGCAAAGT+AGG + chr8_1:83530833-83530852 None:intergenic 40.0%
GGTGGTATCATATTGGATGA+TGG + chr8_1:83530893-83530912 None:intergenic 40.0%
!! ATGACGGACGAAGATAGATA+AGG + chr8_1:83530917-83530936 None:intergenic 40.0%
CTTGATCTTGTGAGTCTAAG+AGG + chr8_1:83531030-83531049 None:intergenic 40.0%
CAACTTACCACATGATCAAG+AGG - chr8_1:83531081-83531100 Msa1220390:exon 40.0%
AACACAAGCTGACAATTCGT+TGG - chr8_1:83531305-83531324 Msa1220390:CDS 40.0%
TGATCATGAGGATGGTACTT+CGG - chr8_1:83531372-83531391 Msa1220390:CDS 40.0%
CTGCTATTATCTGTTCCTTG+TGG + chr8_1:83531523-83531542 None:intergenic 40.0%
! TTCTTACATTTGAGACCGGA+GGG + chr8_1:83531853-83531872 None:intergenic 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr8_1:83531854-83531873 None:intergenic 40.0%
ATGTGGGATTAGACAAAGGA+AGG - chr8_1:83532068-83532087 Msa1220390:CDS 40.0%
CATAAGATAACGCCATGAGA+AGG + chr8_1:83532377-83532396 None:intergenic 40.0%
CTTCTCATGGCGTTATCTTA+TGG - chr8_1:83532375-83532394 Msa1220390:intron 40.0%
CAATGAACTAAGCTCAACCA+TGG + chr8_1:83532407-83532426 None:intergenic 40.0%
CATGGTTGAGCTTAGTTCAT+TGG - chr8_1:83532405-83532424 Msa1220390:intron 40.0%
GATTAAGAGAGGGAGAGAAT+GGG + chr8_1:83530741-83530760 None:intergenic 40.0%
TGAATCAGTGCAAGCAAAGT+AGG + chr8_1:83530833-83530852 None:intergenic 40.0%
GGTGGTATCATATTGGATGA+TGG + chr8_1:83530893-83530912 None:intergenic 40.0%
!! ATGACGGACGAAGATAGATA+AGG + chr8_1:83530917-83530936 None:intergenic 40.0%
CTTGATCTTGTGAGTCTAAG+AGG + chr8_1:83531030-83531049 None:intergenic 40.0%
CAACTTACCACATGATCAAG+AGG - chr8_1:83531081-83531100 Msa1220390:exon 40.0%
AACACAAGCTGACAATTCGT+TGG - chr8_1:83531305-83531324 Msa1220390:CDS 40.0%
TGATCATGAGGATGGTACTT+CGG - chr8_1:83531372-83531391 Msa1220390:CDS 40.0%
CTGCTATTATCTGTTCCTTG+TGG + chr8_1:83531523-83531542 None:intergenic 40.0%
! TTCTTACATTTGAGACCGGA+GGG + chr8_1:83531853-83531872 None:intergenic 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr8_1:83531854-83531873 None:intergenic 40.0%
ATGTGGGATTAGACAAAGGA+AGG - chr8_1:83532068-83532087 Msa1220390:CDS 40.0%
CATAAGATAACGCCATGAGA+AGG + chr8_1:83532377-83532396 None:intergenic 40.0%
CTTCTCATGGCGTTATCTTA+TGG - chr8_1:83532375-83532394 Msa1220390:intron 40.0%
CAATGAACTAAGCTCAACCA+TGG + chr8_1:83532407-83532426 None:intergenic 40.0%
CATGGTTGAGCTTAGTTCAT+TGG - chr8_1:83532405-83532424 Msa1220390:intron 40.0%
GGATTAAGAGAGGGAGAGAA+TGG + chr8_1:83530742-83530761 None:intergenic 45.0%
GACGAAGATAGATAAGGTGG+TGG + chr8_1:83530911-83530930 None:intergenic 45.0%
ACGGACGAAGATAGATAAGG+TGG + chr8_1:83530914-83530933 None:intergenic 45.0%
CAAGAAGCTGATCATGAGGA+TGG - chr8_1:83531364-83531383 Msa1220390:CDS 45.0%
ATGTATACCTTTGGGCCTCT+TGG + chr8_1:83531619-83531638 None:intergenic 45.0%
! AGTCACTTTGCAACGCATGT+GGG - chr8_1:83532052-83532071 Msa1220390:CDS 45.0%
ACGCATGTGGGATTAGACAA+AGG - chr8_1:83532064-83532083 Msa1220390:CDS 45.0%
! TGTTCAACAAGTTTTCCCCC+AGG - chr8_1:83532332-83532351 Msa1220390:intron 45.0%
GCATCGTTGTAACCAGATGA+AGG - chr8_1:83532619-83532638 Msa1220390:five_prime_UTR 45.0%
GGATTAAGAGAGGGAGAGAA+TGG + chr8_1:83530742-83530761 None:intergenic 45.0%
GACGAAGATAGATAAGGTGG+TGG + chr8_1:83530911-83530930 None:intergenic 45.0%
ACGGACGAAGATAGATAAGG+TGG + chr8_1:83530914-83530933 None:intergenic 45.0%
CAAGAAGCTGATCATGAGGA+TGG - chr8_1:83531364-83531383 Msa1220390:CDS 45.0%
ATGTATACCTTTGGGCCTCT+TGG + chr8_1:83531619-83531638 None:intergenic 45.0%
! AGTCACTTTGCAACGCATGT+GGG - chr8_1:83532052-83532071 Msa1220390:CDS 45.0%
ACGCATGTGGGATTAGACAA+AGG - chr8_1:83532064-83532083 Msa1220390:CDS 45.0%
! TGTTCAACAAGTTTTCCCCC+AGG - chr8_1:83532332-83532351 Msa1220390:intron 45.0%
GCATCGTTGTAACCAGATGA+AGG - chr8_1:83532619-83532638 Msa1220390:five_prime_UTR 45.0%
!!! TTTTTATTTTCTTTTATAAT+AGG - chr8_1:83532652-83532671 Msa1220390:five_prime_UTR 5.0%
!!! TTTTTATTTTCTTTTATAAT+AGG - chr8_1:83532652-83532671 Msa1220390:five_prime_UTR 5.0%
TGTGGCAACATGTCTACTCC+AGG + chr8_1:83530702-83530721 None:intergenic 50.0%
AGGATGGTACTTCGGTGAAG+TGG - chr8_1:83531380-83531399 Msa1220390:CDS 50.0%
AAGCAACCACTGTCACCACA+AGG - chr8_1:83531505-83531524 Msa1220390:intron 50.0%
TCTGTTCCTTGTGGTGACAG+TGG + chr8_1:83531514-83531533 None:intergenic 50.0%
ACACCACTAAGACCCCTCTA+TGG - chr8_1:83531584-83531603 Msa1220390:intron 50.0%
TTGGTCCACTCCTCCATAGA+GGG + chr8_1:83531600-83531619 None:intergenic 50.0%
! CAGTCACTTTGCAACGCATG+TGG - chr8_1:83532051-83532070 Msa1220390:CDS 50.0%
AGAGGCTGCAATCCTTCTCA+TGG - chr8_1:83532362-83532381 Msa1220390:intron 50.0%
TGTGGCAACATGTCTACTCC+AGG + chr8_1:83530702-83530721 None:intergenic 50.0%
AGGATGGTACTTCGGTGAAG+TGG - chr8_1:83531380-83531399 Msa1220390:CDS 50.0%
AAGCAACCACTGTCACCACA+AGG - chr8_1:83531505-83531524 Msa1220390:intron 50.0%
TCTGTTCCTTGTGGTGACAG+TGG + chr8_1:83531514-83531533 None:intergenic 50.0%
ACACCACTAAGACCCCTCTA+TGG - chr8_1:83531584-83531603 Msa1220390:intron 50.0%
TTGGTCCACTCCTCCATAGA+GGG + chr8_1:83531600-83531619 None:intergenic 50.0%
! CAGTCACTTTGCAACGCATG+TGG - chr8_1:83532051-83532070 Msa1220390:CDS 50.0%
AGAGGCTGCAATCCTTCTCA+TGG - chr8_1:83532362-83532381 Msa1220390:intron 50.0%
CCTCCATAGAGGGGTCTTAG+TGG + chr8_1:83531590-83531609 None:intergenic 55.0%
CCACTAAGACCCCTCTATGG+AGG - chr8_1:83531587-83531606 Msa1220390:intron 55.0%
AAGACCCCTCTATGGAGGAG+TGG - chr8_1:83531592-83531611 Msa1220390:intron 55.0%
TGGTCCACTCCTCCATAGAG+GGG + chr8_1:83531599-83531618 None:intergenic 55.0%
CTTGGTCCACTCCTCCATAG+AGG + chr8_1:83531601-83531620 None:intergenic 55.0%
CTATGGAGGAGTGGACCAAG+AGG - chr8_1:83531601-83531620 Msa1220390:intron 55.0%
AAGGAAGGCAAGACGTGCTC+TGG - chr8_1:83532083-83532102 Msa1220390:CDS 55.0%
TTTCCCCCAGGATGAGAGAG+AGG - chr8_1:83532344-83532363 Msa1220390:intron 55.0%
TGCAGCCTCTCTCTCATCCT+GGG + chr8_1:83532352-83532371 None:intergenic 55.0%
TTGCAGCCTCTCTCTCATCC+TGG + chr8_1:83532353-83532372 None:intergenic 55.0%
TGTCTACTCCAGGCCTACTC+TGG + chr8_1:83530692-83530711 None:intergenic 55.0%
CCTCCATAGAGGGGTCTTAG+TGG + chr8_1:83531590-83531609 None:intergenic 55.0%
CCACTAAGACCCCTCTATGG+AGG - chr8_1:83531587-83531606 Msa1220390:intron 55.0%
AAGACCCCTCTATGGAGGAG+TGG - chr8_1:83531592-83531611 Msa1220390:intron 55.0%
TGGTCCACTCCTCCATAGAG+GGG + chr8_1:83531599-83531618 None:intergenic 55.0%
CTTGGTCCACTCCTCCATAG+AGG + chr8_1:83531601-83531620 None:intergenic 55.0%
CTATGGAGGAGTGGACCAAG+AGG - chr8_1:83531601-83531620 Msa1220390:intron 55.0%
AAGGAAGGCAAGACGTGCTC+TGG - chr8_1:83532083-83532102 Msa1220390:CDS 55.0%
TTTCCCCCAGGATGAGAGAG+AGG - chr8_1:83532344-83532363 Msa1220390:intron 55.0%
TGCAGCCTCTCTCTCATCCT+GGG + chr8_1:83532352-83532371 None:intergenic 55.0%
TTGCAGCCTCTCTCTCATCC+TGG + chr8_1:83532353-83532372 None:intergenic 55.0%
GAGTGGACCAAGAGGCCCAA+AGG - chr8_1:83531609-83531628 Msa1220390:intron 60.0%
TCTGGCTGCTGCTGCAGCAT+CGG - chr8_1:83532101-83532120 Msa1220390:CDS 60.0%
!! GCTGCTGCAGCATCGGCAAT+TGG - chr8_1:83532108-83532127 Msa1220390:CDS 60.0%
CAGCCTCTCTCTCATCCTGG+GGG + chr8_1:83532350-83532369 None:intergenic 60.0%
GCAGCCTCTCTCTCATCCTG+GGG + chr8_1:83532351-83532370 None:intergenic 60.0%
GAGTGGACCAAGAGGCCCAA+AGG - chr8_1:83531609-83531628 Msa1220390:intron 60.0%
TCTGGCTGCTGCTGCAGCAT+CGG - chr8_1:83532101-83532120 Msa1220390:CDS 60.0%
!! GCTGCTGCAGCATCGGCAAT+TGG - chr8_1:83532108-83532127 Msa1220390:CDS 60.0%
CAGCCTCTCTCTCATCCTGG+GGG + chr8_1:83532350-83532369 None:intergenic 60.0%
GCAGCCTCTCTCTCATCCTG+GGG + chr8_1:83532351-83532370 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 83530692 83532820 83530692 ID=Msa1220390;Name=Msa1220390
chr8_1 mRNA 83530692 83532820 83530692 ID=Msa1220390-mRNA-1;Parent=Msa1220390;Name=Msa1220390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=210|1|1|1|1|1|3|407|320
chr8_1 exon 83530692 83531458 83530692 ID=Msa1220390-mRNA-1:exon:29960;Parent=Msa1220390-mRNA-1
chr8_1 exon 83531882 83532283 83531882 ID=Msa1220390-mRNA-1:exon:29959;Parent=Msa1220390-mRNA-1
chr8_1 exon 83532410 83532820 83532410 ID=Msa1220390-mRNA-1:exon:29958;Parent=Msa1220390-mRNA-1
chr8_1 five_prime_UTR 83532611 83532820 83532611 ID=Msa1220390-mRNA-1:five_prime_utr;Parent=Msa1220390-mRNA-1
chr8_1 CDS 83532410 83532610 83532410 ID=Msa1220390-mRNA-1:cds;Parent=Msa1220390-mRNA-1
chr8_1 CDS 83531882 83532283 83531882 ID=Msa1220390-mRNA-1:cds;Parent=Msa1220390-mRNA-1
chr8_1 CDS 83531099 83531458 83531099 ID=Msa1220390-mRNA-1:cds;Parent=Msa1220390-mRNA-1
chr8_1 three_prime_UTR 83530692 83531098 83530692 ID=Msa1220390-mRNA-1:three_prime_utr;Parent=Msa1220390-mRNA-1
Gene Sequence

>Msa1220390

ATGATACCACCACCTTATCTATCTTCGTCCGTCATGCCTATTGATCTTAATCAAGATCAAAACCATGACCTTTCTAGTCCAAATTCTTCTTCTTCATTTTCTTCTCTATCAGCATCATATTCTACCCTCTTAGACTCACAAGATCAAGTTCAACAACCATCTTATTACTGCCAAACAAACAACTTACCACATGATCAAGAGGTTGAGAAGGTTAATATTCACTCAAGTGGATCATGGAATTCTTCAACTGCAGAAAACCATGAAAACTACAAGACTAAACACAAGCTGACAATTCGTTGGAAGAAAGAACAAATCAGTGATGAAATGAATAATAATCAAGAAGCTGATCATGAGGATGGTACTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATAATGAAGAAGATGATGGTTTCTGATCAAACGGGTAGTTCTAACTTAACAAGTAACTCTAAGCTGATTAAGTTTGAAGATCAAAAGCAACCACTGTCACCACAAGGAACAGATAATAGCAGCAGCAATAATTATTCAACTATTAGGGTTTGCTCTGATTGCAACACCACTAAGACCCCTCTATGGAGGAGTGGACCAAGAGGCCCAAAGTCACTTTGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCTCTGGCTGCTGCTGCAGCATCGGCAATTGGTACAACAATTGCTGATCAGACAGCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAATCCAAAATTGAGTTTGATTGTTCAACAGTGCATATGAAAAAGAAGCAGAAACTTGAAGCAAAACCATCTCATCAAACTAGAAAAGAGTTTATCACTTTTGAGGATTTGAAATTAAGCTTGAGTGAGAATTTGGGTGTTCAACAAGTTTTCCCCCAGGATGAGAGAGAGGCTGCAATCCTTCTCATGGCGTTATCTTATGGATTAGTCCATGGTTGA

Protein sequence

>Msa1220390

MIPPPYLSSSVMPIDLNQDQNHDLSSPNSSSSFSSLSASYSTLLDSQDQVQQPSYYCQTNNLPHDQEVEKVNIHSSGSWNSSTAENHENYKTKHKLTIRWKKEQISDEMNNNQEADHEDGTSVKWMSSKMRIMKKMMVSDQTGSSNLTSNSKLIKFEDQKQPLSPQGTDNSSSNNYSTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAASAIGTTIADQTASVKRKKLQKKKENKSKIEFDCSTVHMKKKQKLEAKPSHQTRKEFITFEDLKLSLSENLGVQQVFPQDEREAAILLMALSYGLVHG*