AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190470 MtrunA17_Chr2g0280091 93.275 461 30 1 10 469 1 461 0.0 873
Msa0190470 MtrunA17_Chr4g0049371 70.760 513 113 4 16 510 36 529 0.0 733
Msa0190470 MtrunA17_Chr5g0411431 63.314 507 157 5 16 507 5 497 0.0 624
Msa0190470 MtrunA17_Chr2g0280111 73.494 249 21 2 262 510 13 216 1.06e-120 353
Msa0190470 MtrunA17_Chr2g0280101 80.214 187 18 2 43 214 1 183 2.22e-97 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190470 AT5G64500.1 60.079 506 148 3 6 493 14 483 0.0 611
Msa0190470 AT2G22730.3 61.212 495 176 3 17 495 38 532 0.0 604
Msa0190470 AT2G22730.2 60.941 489 174 3 17 490 38 524 0.0 588
Msa0190470 AT2G22730.6 59.432 493 162 4 17 495 38 506 0.0 580
Msa0190470 AT2G22730.1 59.138 487 160 4 17 490 38 498 0.0 564
Msa0190470 AT5G65687.1 53.216 513 202 6 5 501 2 492 0.0 534
Msa0190470 AT2G22730.7 61.298 416 157 2 78 491 1 414 3.04e-179 510
Msa0190470 AT2G22730.5 59.848 396 144 2 18 398 39 434 4.92e-161 467
Msa0190470 AT2G22730.4 56.461 356 118 3 17 359 38 369 4.13e-134 394

Find 111 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTATCAAATGCATTTA+AGG 0.118415 2_1:+5981696 Msa0190470:CDS
ATGCTTCCATTTGCTATTTC+AGG 0.131188 2_1:+5980520 Msa0190470:CDS
CTTAGGTGCTTACTCATATT+GGG 0.163614 2_1:+5981361 Msa0190470:CDS
ACTGAGTCAGATTTGGTATT+TGG 0.165045 2_1:+5981604 Msa0190470:CDS
TTGGTTGGCGTTATGCATTC+TGG 0.184635 2_1:+5980482 Msa0190470:CDS
GATTAATTTGTTAAACTATT+TGG 0.194774 2_1:+5978488 Msa0190470:CDS
GTAAATCCATTTAGACTTAT+AGG 0.204179 2_1:+5979664 Msa0190470:CDS
CTCTCAGTGACAACATTTCT+TGG 0.208157 2_1:+5982132 Msa0190470:CDS
TAACAGATTGGAAGTAATTT+TGG 0.216065 2_1:+5980463 Msa0190470:intron
GTTTATATTATCAATGTTCT+AGG 0.217385 2_1:+5981104 Msa0190470:CDS
CCAACTCCTATAAGTCTAAA+TGG 0.221380 2_1:-5979670 None:intergenic
TCTTAGGTGCTTACTCATAT+TGG 0.225768 2_1:+5981360 Msa0190470:CDS
TATGCACTTGGCTATGTTTA+TGG 0.253229 2_1:+5980304 Msa0190470:CDS
ACCGTTGCCATTCATCTCTT+TGG 0.255031 2_1:+5982616 Msa0190470:CDS
TACAATTGTATGTGGAATAG+TGG 0.292899 2_1:+5981633 Msa0190470:CDS
CCATGATTCCCACAACTTCA+TGG 0.295748 2_1:+5978174 Msa0190470:CDS
GATATGAATTTCATAGGAAA+TGG 0.309390 2_1:-5983861 None:intergenic
ATAGCGTACAACTTTGTCTT+AGG 0.313540 2_1:+5981344 Msa0190470:CDS
ATAGCTAGCAATGGTGTTAA+TGG 0.334552 2_1:+5978522 Msa0190470:CDS
TGTTCCTGTTGATTTGATAA+AGG 0.334594 2_1:+5980652 Msa0190470:CDS
TAAATATTGTAGACAACTTT+GGG 0.335747 2_1:-5981386 None:intergenic
TCCAGCCGCTGGACACAATA+TGG 0.344058 2_1:-5983304 None:intergenic
TCCATTGATATGAATTTCAT+AGG 0.345780 2_1:-5983867 None:intergenic
GTGCCTTCCTCACCCCTTGT+TGG 0.349853 2_1:+5982643 Msa0190470:CDS
TCTCAGTGACAACATTTCTT+GGG 0.352146 2_1:+5982133 Msa0190470:CDS
TGACAATGCCCCGGCTTCTC+TGG 0.352641 2_1:+5979955 Msa0190470:CDS
TTAGTTATACAATACCTCTT+TGG 0.358595 2_1:-5978203 None:intergenic
TTGGCAGACTGAGTCAGATT+TGG 0.371765 2_1:+5981597 Msa0190470:intron
TGTGTCCAGCGGCTGGAATA+TGG 0.373453 2_1:+5983310 Msa0190470:CDS
TCCTATGAAATTCATATCAA+TGG 0.379668 2_1:+5983866 Msa0190470:three_prime_UTR
GGGAATCATGGATGACACTA+TGG 0.383133 2_1:-5978162 None:intergenic
ATAAATATTGTAGACAACTT+TGG 0.392903 2_1:-5981387 None:intergenic
TGAGCTAGAGAGGCAAATAT+TGG 0.393358 2_1:-5979158 None:intergenic
TGGCTATGTTTATGGTGGTT+TGG 0.400561 2_1:+5980312 Msa0190470:CDS
AACATCCAAAGTCTTGTTCA+TGG 0.403880 2_1:+5978133 Msa0190470:CDS
ATTGGCTGGAGGATTTGTTC+TGG 0.405042 2_1:+5981660 Msa0190470:CDS
ACCCCTTGTTGGAGTTCTCC+AGG 0.406458 2_1:+5982654 Msa0190470:CDS
ATATGAATTTCATAGGAAAT+GGG 0.412946 2_1:-5983860 None:intergenic
ATGAGATATTGATGTTTCTT+CGG 0.414184 2_1:-5983700 None:intergenic
GGAATAGTGGGCACATTGGC+TGG 0.421757 2_1:+5981646 Msa0190470:CDS
CTGGACACAATATGGTTGTT+AGG 0.422253 2_1:-5983296 None:intergenic
GACCTTAAATGCATTTGATA+AGG 0.427906 2_1:-5981698 None:intergenic
AAAATGATTTCATGATAAAT+CGG 0.428841 2_1:-5983820 None:intergenic
CCATTTAGACTTATAGGAGT+TGG 0.430523 2_1:+5979670 Msa0190470:CDS
TGTGCCTTTATCAAATCAAC+AGG 0.433163 2_1:-5980656 None:intergenic
ACATCTAGTGTTAGATAGAA+AGG 0.436620 2_1:+5978067 Msa0190470:five_prime_UTR
TTGTTAAACTATTTGGATCA+AGG 0.438250 2_1:+5978495 Msa0190470:CDS
TGGTTGGCGTTATGCATTCT+GGG 0.445125 2_1:+5980483 Msa0190470:CDS
ACCATATTGTGTCCAGCGGC+TGG 0.445261 2_1:+5983303 Msa0190470:CDS
GTAGACATGGCCATGGATAA+AGG 0.447565 2_1:-5982595 None:intergenic
GCGGCTGGAATATGGTTTAT+CGG 0.450229 2_1:+5983318 Msa0190470:CDS
AAAAGCAAACCAGAGAAGCC+GGG 0.461774 2_1:-5979964 None:intergenic
CTGTATAGGCTGGTTGGTGT+TGG 0.467793 2_1:+5979893 Msa0190470:intron
TCTGTACCTTTCAACTGTAA+AGG 0.468312 2_1:-5980556 None:intergenic
CCATGAAGTTGTGGGAATCA+TGG 0.468969 2_1:-5978174 None:intergenic
AATGGTGTTAATGGAAGTAC+AGG 0.469707 2_1:+5978531 Msa0190470:CDS
ATTATTCTGTATAGGCTGGT+TGG 0.470521 2_1:+5979887 Msa0190470:intron
ATTCACATTTCTGCATAAGA+AGG 0.471652 2_1:-5982175 None:intergenic
TGCAGGATAGCATTAACAAC+TGG 0.476380 2_1:+5983256 Msa0190470:intron
GGAGGAATTACAATTGTATG+TGG 0.480593 2_1:+5981625 Msa0190470:CDS
GAGTCAGATTTGGTATTTGG+AGG 0.482892 2_1:+5981607 Msa0190470:CDS
TTACATGCGACAGACAGAAA+TGG 0.486623 2_1:-5979749 None:intergenic
TTCTTATGCAGAAATGTGAA+TGG 0.488398 2_1:+5982177 Msa0190470:CDS
GTACCTGACACAGTTGCATC+AGG 0.504773 2_1:+5980680 Msa0190470:CDS
ACTCCTGATGCAACTGTGTC+AGG 0.507213 2_1:-5980683 None:intergenic
TCGGTCTTCTCTTGAAGTAA+CGG 0.507598 2_1:-5983681 None:intergenic
ATGGATAAAGGTCTCAAACT+TGG 0.508812 2_1:-5982583 None:intergenic
GACCTGGAGAACTCCAACAA+GGG 0.512863 2_1:-5982656 None:intergenic
GGTGTAAACCATGAAGTTGT+GGG 0.513168 2_1:-5978182 None:intergenic
ACAGTTGCATCAGGAGTTCA+TGG 0.514390 2_1:+5980689 Msa0190470:CDS
ATGAAGCCTTTACAGTTGAA+AGG 0.521699 2_1:+5980550 Msa0190470:CDS
CTCAGTGACAACATTTCTTG+GGG 0.529695 2_1:+5982134 Msa0190470:CDS
TGGTTCCATGAACAAGACTT+TGG 0.542185 2_1:-5978138 None:intergenic
CACATCTCCAAAGAGATGAA+TGG 0.546684 2_1:-5982623 None:intergenic
TAATATAAACATTATCAAGC+AGG 0.549607 2_1:-5981091 None:intergenic
TTAGGTGCTTACTCATATTG+GGG 0.554059 2_1:+5981362 Msa0190470:CDS
GAGAACTCCAACAAGGGGTG+AGG 0.555912 2_1:-5982650 None:intergenic
ATAAACCATATTCCAGCCGC+TGG 0.562993 2_1:-5983315 None:intergenic
ATGAATGGCAACGGTAGACA+TGG 0.568087 2_1:-5982608 None:intergenic
AAGTTTGAGACCTTTATCCA+TGG 0.571776 2_1:+5982585 Msa0190470:CDS
ATACCATCTGGATATGCACT+TGG 0.571968 2_1:+5980292 Msa0190470:CDS
ACAATTGTATGTGGAATAGT+GGG 0.577169 2_1:+5981634 Msa0190470:CDS
TGGTGTAAACCATGAAGTTG+TGG 0.580859 2_1:-5978183 None:intergenic
CTTCATGGTTTACACCAAAG+AGG 0.583890 2_1:+5978189 Msa0190470:CDS
AAAGTCACGAACGCTTCTAA+CGG 0.584653 2_1:+5980815 Msa0190470:intron
AGGAATATTTGTGCATAGTG+TGG 0.587748 2_1:+5983617 Msa0190470:intron
GCACTTGGCTATGTTTATGG+TGG 0.591399 2_1:+5980307 Msa0190470:CDS
ACTCCAACAAGGGGTGAGGA+AGG 0.592984 2_1:-5982646 None:intergenic
TTTCATTGATGACAATGCCC+CGG 0.593463 2_1:+5979946 Msa0190470:CDS
AAAGCAAACCAGAGAAGCCG+GGG 0.600500 2_1:-5979963 None:intergenic
TAGGAGTTGGATTGTCAATG+TGG 0.604600 2_1:+5979683 Msa0190470:CDS
GGCAACGGTAGACATGGCCA+TGG 0.609428 2_1:-5982602 None:intergenic
TGAAGACATACATAATTCAC+CGG 0.611936 2_1:-5982550 None:intergenic
GGGGCATTGTCATCAATGAA+AGG 0.612101 2_1:-5979944 None:intergenic
TGACCTGGAGAACTCCAACA+AGG 0.616410 2_1:-5982657 None:intergenic
TAGGCTGGTTGGTGTTGGTG+AGG 0.618424 2_1:+5979898 Msa0190470:intron
ACCTGGAGAACTCCAACAAG+GGG 0.622922 2_1:-5982655 None:intergenic
GGAATCATGGATGACACTAT+GGG 0.627440 2_1:-5978161 None:intergenic
TGTCTACAATATTTATAACA+TGG 0.628485 2_1:+5981394 Msa0190470:CDS
TCCAAAGAGATGAATGGCAA+CGG 0.630729 2_1:-5982617 None:intergenic
TAATTACCTCTGAGCTAGAG+AGG 0.634819 2_1:-5979168 None:intergenic
CAAGGAGCAATAGCTAGCAA+TGG 0.636477 2_1:+5978513 Msa0190470:CDS
AACAACCATATTGTGTCCAG+CGG 0.642017 2_1:+5983299 Msa0190470:CDS
GCATTGTCATCAATGAAAGG+TGG 0.643797 2_1:-5979941 None:intergenic
TAGCCAAGTGCATATCCAGA+TGG 0.650333 2_1:-5980295 None:intergenic
ATCATGGATGACACTATGGG+TGG 0.677731 2_1:-5978158 None:intergenic
ATAGTGGGCACATTGGCTGG+AGG 0.691542 2_1:+5981649 Msa0190470:CDS
ATGTGGAATAGTGGGCACAT+TGG 0.702676 2_1:+5981642 Msa0190470:CDS
GTGTGTATCAGAAAACAACA+TGG 0.704469 2_1:+5980248 Msa0190470:intron
ATAGAAGGAAAGTACCTGAG+TGG 0.719596 2_1:-5982241 None:intergenic
TATTTGCCTCTCTAGCTCAG+AGG 0.719961 2_1:+5979162 Msa0190470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTTGTTAAACTATT+TGG + chr2_1:5978488-5978507 Msa0190470:CDS 15.0%
!! GTATATCTAATAATAAGAAT+AGG - chr2_1:5979226-5979245 None:intergenic 15.0%
!! TTATGTAAAGAAATTTACAA+GGG - chr2_1:5979993-5980012 None:intergenic 15.0%
!! ATTATGTAAAGAAATTTACA+AGG - chr2_1:5979994-5980013 None:intergenic 15.0%
!! ATATACAAGAAATCAATAAT+TGG - chr2_1:5980938-5980957 None:intergenic 15.0%
!! TGTATAAAATAAAACATGTT+TGG + chr2_1:5981501-5981520 Msa0190470:intron 15.0%
!! AATCTGAAAAATAATACTTT+GGG - chr2_1:5983111-5983130 None:intergenic 15.0%
!! TCAAAAAAAATTCTAACTTA+TGG - chr2_1:5983579-5983598 None:intergenic 15.0%
!! AAAATGATTTCATGATAAAT+CGG - chr2_1:5983823-5983842 None:intergenic 15.0%
!!! ATAAACGTTTTATCCAATTT+TGG + chr2_1:5978332-5978351 Msa0190470:intron 20.0%
!!! TAAACGTTTTATCCAATTTT+GGG + chr2_1:5978333-5978352 Msa0190470:intron 20.0%
!!! AATGTTCTTTTTTGTTTTGT+AGG + chr2_1:5978445-5978464 Msa0190470:intron 20.0%
!! AAATATATGAATTGTGAGAA+AGG - chr2_1:5979638-5979657 None:intergenic 20.0%
!! AATCATTAGTACTAAACTTA+TGG + chr2_1:5979831-5979850 Msa0190470:intron 20.0%
!! GAAATCAATAATTGGAAAAA+TGG - chr2_1:5980930-5980949 None:intergenic 20.0%
!! GTCTAACATTTATAATTTAG+TGG + chr2_1:5980964-5980983 Msa0190470:intron 20.0%
!! TAATATAAACATTATCAAGC+AGG - chr2_1:5981094-5981113 None:intergenic 20.0%
!! GTTTATATTATCAATGTTCT+AGG + chr2_1:5981104-5981123 Msa0190470:CDS 20.0%
!! ACAAATAGATAATTAAGTCA+CGG - chr2_1:5981317-5981336 None:intergenic 20.0%
!! TGACTTAATTATCTATTTGT+AGG + chr2_1:5981317-5981336 Msa0190470:intron 20.0%
!! TAAATATTGTAGACAACTTT+GGG - chr2_1:5981389-5981408 None:intergenic 20.0%
!! ATAAATATTGTAGACAACTT+TGG - chr2_1:5981390-5981409 None:intergenic 20.0%
!! TGTCTACAATATTTATAACA+TGG + chr2_1:5981394-5981413 Msa0190470:CDS 20.0%
!!! AAAGGTATATTAATGCATAA+GGG - chr2_1:5981444-5981463 None:intergenic 20.0%
!!! TAAAGGTATATTAATGCATA+AGG - chr2_1:5981445-5981464 None:intergenic 20.0%
!! TTAATATACCTTTACTATCA+TGG + chr2_1:5981451-5981470 Msa0190470:intron 20.0%
!!! TATTACTTTCATACCTTTTT+AGG + chr2_1:5981748-5981767 Msa0190470:intron 20.0%
!!! ATTTAAGATTTCTTTACTTG+AGG + chr2_1:5981888-5981907 Msa0190470:intron 20.0%
!! TAAGTTTACAATGTAAAATC+AGG + chr2_1:5982912-5982931 Msa0190470:intron 20.0%
!! GAATCTGAAAAATAATACTT+TGG - chr2_1:5983112-5983131 None:intergenic 20.0%
!! AAAAAAATTCTAACTTATGG+AGG - chr2_1:5983576-5983595 None:intergenic 20.0%
!! ATATGAATTTCATAGGAAAT+GGG - chr2_1:5983863-5983882 None:intergenic 20.0%
!!! TTGAAAAACTTTGAGTTGAA+TGG - chr2_1:5978039-5978058 None:intergenic 25.0%
! TTAGTTATACAATACCTCTT+TGG - chr2_1:5978206-5978225 None:intergenic 25.0%
!! TTCATTCTTCTTTGCATTTT+TGG + chr2_1:5978295-5978314 Msa0190470:intron 25.0%
! AATTGAAACAAACCCAAAAT+TGG - chr2_1:5978348-5978367 None:intergenic 25.0%
!!! TTTTGGGTTTGTTTCAATTT+TGG + chr2_1:5978349-5978368 Msa0190470:intron 25.0%
!!! TTTTTGTTTTGTAGGTTACT+TGG + chr2_1:5978453-5978472 Msa0190470:intron 25.0%
! TTGTTAAACTATTTGGATCA+AGG + chr2_1:5978495-5978514 Msa0190470:CDS 25.0%
! AACAAGAAATCAAGAACATA+GGG + chr2_1:5978596-5978615 Msa0190470:intron 25.0%
! AACAACCTAATGATCATATT+TGG + chr2_1:5978637-5978656 Msa0190470:intron 25.0%
! CTAATGATCATATTTGGTTA+CGG + chr2_1:5978643-5978662 Msa0190470:intron 25.0%
! TAATGATCATATTTGGTTAC+GGG + chr2_1:5978644-5978663 Msa0190470:intron 25.0%
! CGTATAAATTCAATGCTTTA+AGG + chr2_1:5978829-5978848 Msa0190470:intron 25.0%
!!! AATTCAATGCTTTAAGGTTT+TGG + chr2_1:5978835-5978854 Msa0190470:intron 25.0%
!!! ATTCAATGCTTTAAGGTTTT+GGG + chr2_1:5978836-5978855 Msa0190470:intron 25.0%
! ATGTTACACTATCAATGTTA+GGG - chr2_1:5979002-5979021 None:intergenic 25.0%
!!! AACTTGAACAATTTTGAAGA+TGG + chr2_1:5979092-5979111 Msa0190470:CDS 25.0%
!!! AGTTTTATCATCTGCTTTTA+TGG + chr2_1:5979115-5979134 Msa0190470:CDS 25.0%
! AGAATAGGTTTCATATTGAT+TGG - chr2_1:5979211-5979230 None:intergenic 25.0%
! ATTTGCAACTTATCTTATGA+AGG - chr2_1:5979280-5979299 None:intergenic 25.0%
! AATTTGATATCATTGCTCTA+TGG - chr2_1:5979341-5979360 None:intergenic 25.0%
! AGCAAAATTACTACAATAGT+TGG + chr2_1:5979467-5979486 Msa0190470:intron 25.0%
! GTAAATCCATTTAGACTTAT+AGG + chr2_1:5979664-5979683 Msa0190470:CDS 25.0%
! TTGAAAATCTAATCAAGCTT+AGG + chr2_1:5980019-5980038 Msa0190470:intron 25.0%
! TAGTATTTAGTATTAGACAG+TGG - chr2_1:5980361-5980380 None:intergenic 25.0%
! TACTAAATATCCATATGTAC+TGG + chr2_1:5980376-5980395 Msa0190470:intron 25.0%
!! TAACAGATTGGAAGTAATTT+TGG + chr2_1:5980463-5980482 Msa0190470:intron 25.0%
! AAAAATCCTGAAATAGCAAA+TGG - chr2_1:5980529-5980548 None:intergenic 25.0%
!! CAAACAAGTGAATTTTGTTA+AGG - chr2_1:5980791-5980810 None:intergenic 25.0%
! GGAAAAATGGTTATTTAAGA+AGG - chr2_1:5980917-5980936 None:intergenic 25.0%
!!! ATCTGACAGATTCTTATTTT+AGG + chr2_1:5981006-5981025 Msa0190470:intron 25.0%
! TTTACAATATGAAGTTCACA+GGG - chr2_1:5981237-5981256 None:intergenic 25.0%
!! TTTTACAATATGAAGTTCAC+AGG - chr2_1:5981238-5981257 None:intergenic 25.0%
! AAATAGATAATTAAGTCACG+GGG - chr2_1:5981315-5981334 None:intergenic 25.0%
! CAAATAGATAATTAAGTCAC+GGG - chr2_1:5981316-5981335 None:intergenic 25.0%
! ACAATATTTATAACATGGTG+AGG + chr2_1:5981399-5981418 Msa0190470:intron 25.0%
!! ATGTTAAACTTGGCTTATTT+TGG + chr2_1:5981578-5981597 Msa0190470:intron 25.0%
!! TTATCAAATGCATTTAAGGT+CGG + chr2_1:5981700-5981719 Msa0190470:intron 25.0%
! AAGATACTATGAACCTAAAA+AGG - chr2_1:5981764-5981783 None:intergenic 25.0%
!! ATAGGGTTGTAATTTGTAAA+CGG + chr2_1:5981839-5981858 Msa0190470:intron 25.0%
! TAACAATAAATTGAGCATCA+TGG + chr2_1:5981944-5981963 Msa0190470:intron 25.0%
!! TAGTTAAAAGTTTAGCTTAC+TGG - chr2_1:5982060-5982079 None:intergenic 25.0%
!! TTTCTTGTTCTTTTCTCTAT+TGG + chr2_1:5982201-5982220 Msa0190470:CDS 25.0%
!!! TAGGAATTTTCAAGATCAAA+TGG - chr2_1:5982369-5982388 None:intergenic 25.0%
! TTCTTGTCAAGAATTTAACT+AGG - chr2_1:5982388-5982407 None:intergenic 25.0%
! AGTAAAATAACCTCTACATT+TGG + chr2_1:5982424-5982443 Msa0190470:intron 25.0%
! ATCTAAATTTCCAAATGTAG+AGG - chr2_1:5982437-5982456 None:intergenic 25.0%
! AAGAACTAAATCTCATTGTA+CGG + chr2_1:5982472-5982491 Msa0190470:intron 25.0%
! TGAATATTTACATTTGCTTG+CGG + chr2_1:5982512-5982531 Msa0190470:intron 25.0%
! CAATGATTAAAAACTGCAAA+TGG - chr2_1:5982729-5982748 None:intergenic 25.0%
! TAATTTCCAAAACAAAGGTA+TGG - chr2_1:5982752-5982771 None:intergenic 25.0%
! CAACATAATTTCCAAAACAA+AGG - chr2_1:5982757-5982776 None:intergenic 25.0%
!!! CACTTTAAAGTTGTTGATTT+CGG + chr2_1:5982809-5982828 Msa0190470:intron 25.0%
! AAACTATACATCGTTTGTAT+TGG + chr2_1:5982990-5983009 Msa0190470:intron 25.0%
! TGTATGAAGTAAACTATGTT+AGG - chr2_1:5983040-5983059 None:intergenic 25.0%
! TAGTTTACTTCATACATCTA+TGG + chr2_1:5983044-5983063 Msa0190470:intron 25.0%
! ATGAGATATTGATGTTTCTT+CGG - chr2_1:5983703-5983722 None:intergenic 25.0%
! GATATGAATTTCATAGGAAA+TGG - chr2_1:5983864-5983883 None:intergenic 25.0%
! TCCTATGAAATTCATATCAA+TGG + chr2_1:5983866-5983885 Msa0190470:three_prime_UTR 25.0%
! TCCATTGATATGAATTTCAT+AGG - chr2_1:5983870-5983889 None:intergenic 25.0%
ACATCTAGTGTTAGATAGAA+AGG + chr2_1:5978067-5978086 Msa0190470:five_prime_UTR 30.0%
!!! TGCATTTTTGGTATATCATG+TGG + chr2_1:5978307-5978326 Msa0190470:intron 30.0%
!!! GCATTTTTGGTATATCATGT+GGG + chr2_1:5978308-5978327 Msa0190470:intron 30.0%
!!! CATTTTTGGTATATCATGTG+GGG + chr2_1:5978309-5978328 Msa0190470:intron 30.0%
!! TTTCTTGTTCTGAGAAAAGA+AGG - chr2_1:5978585-5978604 None:intergenic 30.0%
GAACAAGAAATCAAGAACAT+AGG + chr2_1:5978595-5978614 Msa0190470:intron 30.0%
CGTAACCAAATATGATCATT+AGG - chr2_1:5978645-5978664 None:intergenic 30.0%
TACTTAGTTGGACGAAAAAT+AGG - chr2_1:5978670-5978689 None:intergenic 30.0%
TATCTTCCGTCCAATTATAA+TGG + chr2_1:5978952-5978971 Msa0190470:intron 30.0%
ATCTTCCGTCCAATTATAAT+GGG + chr2_1:5978953-5978972 Msa0190470:intron 30.0%
CATGTTACACTATCAATGTT+AGG - chr2_1:5979003-5979022 None:intergenic 30.0%
!! TTATCATCTGCTTTTATGGT+TGG + chr2_1:5979119-5979138 Msa0190470:CDS 30.0%
! CATATTGATTGGAACATGAA+TGG - chr2_1:5979200-5979219 None:intergenic 30.0%
TGCAATTGAATGTGTATTTG+AGG + chr2_1:5979381-5979400 Msa0190470:intron 30.0%
ATGTAAGAACTTCAGTGTAA+TGG - chr2_1:5979516-5979535 None:intergenic 30.0%
GAAAGAAAAACCACAAAAGA+AGG - chr2_1:5979719-5979738 None:intergenic 30.0%
! GTGGTTTTTCTTTCAATTTC+TGG + chr2_1:5979725-5979744 Msa0190470:CDS 30.0%
ATGCCTTCATTATTCTGTAT+AGG + chr2_1:5979879-5979898 Msa0190470:intron 30.0%
TTGAAATGAACGAAGCAAAA+TGG - chr2_1:5980150-5980169 None:intergenic 30.0%
! TTTTACATGTGTATACCATC+TGG + chr2_1:5980280-5980299 Msa0190470:CDS 30.0%
! GATTCTTTTTCCAGTACATA+TGG - chr2_1:5980389-5980408 None:intergenic 30.0%
CAATCTGTTAATACACACAA+AGG - chr2_1:5980453-5980472 None:intergenic 30.0%
CTTTGTGTGTATTAACAGAT+TGG + chr2_1:5980451-5980470 Msa0190470:intron 30.0%
!! AGATTGGAAGTAATTTTGGT+TGG + chr2_1:5980467-5980486 Msa0190470:intron 30.0%
! GGTACAGATTTTTCTTGAAT+TGG + chr2_1:5980571-5980590 Msa0190470:intron 30.0%
!! TGTTCCTGTTGATTTGATAA+AGG + chr2_1:5980652-5980671 Msa0190470:CDS 30.0%
TTAAACCAGAAATGAGTATC+AGG - chr2_1:5980737-5980756 None:intergenic 30.0%
! AGATGAGTCATTGTCTTTTA+AGG + chr2_1:5980841-5980860 Msa0190470:CDS 30.0%
! GTTTTTGTTCTAACTTGGAT+TGG - chr2_1:5980895-5980914 None:intergenic 30.0%
! AGAAGGTTTTTGTTCTAACT+TGG - chr2_1:5980900-5980919 None:intergenic 30.0%
ATTAATGCATAAGGGATCAT+TGG - chr2_1:5981436-5981455 None:intergenic 30.0%
ATGAACAACCATGATAGTAA+AGG - chr2_1:5981462-5981481 None:intergenic 30.0%
ATAAAACATGTTTGGCATTC+TGG + chr2_1:5981509-5981528 Msa0190470:intron 30.0%
TACAATTGTATGTGGAATAG+TGG + chr2_1:5981633-5981652 Msa0190470:CDS 30.0%
ACAATTGTATGTGGAATAGT+GGG + chr2_1:5981634-5981653 Msa0190470:CDS 30.0%
CACCTTATCAAATGCATTTA+AGG + chr2_1:5981696-5981715 Msa0190470:CDS 30.0%
GACCTTAAATGCATTTGATA+AGG - chr2_1:5981701-5981720 None:intergenic 30.0%
TATTAGGAGGAAAATCTCTT+TGG - chr2_1:5982004-5982023 None:intergenic 30.0%
! TTACAAGTCGACTCAATATT+AGG - chr2_1:5982020-5982039 None:intergenic 30.0%
!! AATATTGAGTCGACTTGTAA+CGG + chr2_1:5982020-5982039 Msa0190470:intron 30.0%
ATTCACATTTCTGCATAAGA+AGG - chr2_1:5982178-5982197 None:intergenic 30.0%
TTCTTATGCAGAAATGTGAA+TGG + chr2_1:5982177-5982196 Msa0190470:CDS 30.0%
!! GTACAATGAGATTTAGTTCT+TGG - chr2_1:5982473-5982492 None:intergenic 30.0%
TGAAGACATACATAATTCAC+CGG - chr2_1:5982553-5982572 None:intergenic 30.0%
TTTGGAAATTATGTTGCCAA+CGG + chr2_1:5982761-5982780 Msa0190470:intron 30.0%
! GTTGATTTCGGAAAATAAAG+TGG + chr2_1:5982821-5982840 Msa0190470:intron 30.0%
!! TAATTTTAGCCATCAATGTG+TGG - chr2_1:5982860-5982879 None:intergenic 30.0%
! ACACATTGATGGCTAAAATT+AGG + chr2_1:5982859-5982878 Msa0190470:intron 30.0%
! CTATGGTCATCATAGATTTT+AGG + chr2_1:5983061-5983080 Msa0190470:intron 30.0%
! CACAATACATTTTCTGTGAT+CGG - chr2_1:5983212-5983231 None:intergenic 30.0%
!!! TGGAATTTTTTGACACACTA+TGG + chr2_1:5983230-5983249 Msa0190470:intron 30.0%
!! TGAAAGCTTTTGAGAAAATG+TGG - chr2_1:5983506-5983525 None:intergenic 30.0%
TAACTTATGGAGGACTTATT+TGG - chr2_1:5983566-5983585 None:intergenic 30.0%
! CATTTTTGTCAGTTGAGTTA+GGG - chr2_1:5983800-5983819 None:intergenic 30.0%
!! AACATCCAAAGTCTTGTTCA+TGG + chr2_1:5978133-5978152 Msa0190470:CDS 35.0%
TAAGCAACACTAACAGAAGA+GGG - chr2_1:5978424-5978443 None:intergenic 35.0%
ATAAGCAACACTAACAGAAG+AGG - chr2_1:5978425-5978444 None:intergenic 35.0%
! ATAGCTAGCAATGGTGTTAA+TGG + chr2_1:5978522-5978541 Msa0190470:CDS 35.0%
! AATGGTGTTAATGGAAGTAC+AGG + chr2_1:5978531-5978550 Msa0190470:CDS 35.0%
! GAGCATTTGAGTTCAAATCT+GGG + chr2_1:5978716-5978735 Msa0190470:intron 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG + chr2_1:5978847-5978866 Msa0190470:intron 35.0%
ATAAGTAAAGTCTAGCCAAG+TGG - chr2_1:5978935-5978954 None:intergenic 35.0%
ACATCAGCACCCATTATAAT+TGG - chr2_1:5978965-5978984 None:intergenic 35.0%
! ATATTTTTCCTGTTGTGTGC+AGG + chr2_1:5979060-5979079 Msa0190470:intron 35.0%
! TATTTTTCCTGTTGTGTGCA+GGG + chr2_1:5979061-5979080 Msa0190470:intron 35.0%
TTGATATCATTGCTCTATGG+TGG - chr2_1:5979338-5979357 None:intergenic 35.0%
CATTCAATTGCACATCAAGA+AGG - chr2_1:5979373-5979392 None:intergenic 35.0%
! TGTATTTGAGGCAATCTTCT+TGG + chr2_1:5979393-5979412 Msa0190470:intron 35.0%
CTGAAGTTCTTACATCTGAT+AGG + chr2_1:5979521-5979540 Msa0190470:intron 35.0%
GCACATACAAGGAAAAAGAT+CGG - chr2_1:5979572-5979591 None:intergenic 35.0%
GTGAGAAAGGATTCTTATGT+CGG - chr2_1:5979625-5979644 None:intergenic 35.0%
CCAACTCCTATAAGTCTAAA+TGG - chr2_1:5979673-5979692 None:intergenic 35.0%
CCATTTAGACTTATAGGAGT+TGG + chr2_1:5979670-5979689 Msa0190470:CDS 35.0%
CAGCCTATACAGAATAATGA+AGG - chr2_1:5979885-5979904 None:intergenic 35.0%
CTTCATTATTCTGTATAGGC+TGG + chr2_1:5979883-5979902 Msa0190470:intron 35.0%
ATTATTCTGTATAGGCTGGT+TGG + chr2_1:5979887-5979906 Msa0190470:intron 35.0%
CAACAATTGACAAATGGCAT+TGG - chr2_1:5980177-5980196 None:intergenic 35.0%
CATAAAGAAGAAAGAACAGC+AGG - chr2_1:5980200-5980219 None:intergenic 35.0%
CTGCTGTTCTTTCTTCTTTA+TGG + chr2_1:5980198-5980217 Msa0190470:intron 35.0%
CTGTTCTTTCTTCTTTATGG+TGG + chr2_1:5980201-5980220 Msa0190470:intron 35.0%
GTGTGTATCAGAAAACAACA+TGG + chr2_1:5980248-5980267 Msa0190470:intron 35.0%
TATGCACTTGGCTATGTTTA+TGG + chr2_1:5980304-5980323 Msa0190470:CDS 35.0%
TTTAGTATTAGACAGTGGCA+GGG - chr2_1:5980356-5980375 None:intergenic 35.0%
ATTTAGTATTAGACAGTGGC+AGG - chr2_1:5980357-5980376 None:intergenic 35.0%
!! ATGCTTCCATTTGCTATTTC+AGG + chr2_1:5980520-5980539 Msa0190470:CDS 35.0%
ATGAAGCCTTTACAGTTGAA+AGG + chr2_1:5980550-5980569 Msa0190470:CDS 35.0%
TCTGTACCTTTCAACTGTAA+AGG - chr2_1:5980559-5980578 None:intergenic 35.0%
ACCGACGGAAAACAATAATA+GGG - chr2_1:5980609-5980628 None:intergenic 35.0%
TACCGACGGAAAACAATAAT+AGG - chr2_1:5980610-5980629 None:intergenic 35.0%
AAATCAACAGGAACAAAACC+TGG - chr2_1:5980647-5980666 None:intergenic 35.0%
TGTGCCTTTATCAAATCAAC+AGG - chr2_1:5980659-5980678 None:intergenic 35.0%
! ATTAGCCTGATACTCATTTC+TGG + chr2_1:5980729-5980748 Msa0190470:intron 35.0%
ATAGCGTACAACTTTGTCTT+AGG + chr2_1:5981344-5981363 Msa0190470:CDS 35.0%
TCTTAGGTGCTTACTCATAT+TGG + chr2_1:5981360-5981379 Msa0190470:CDS 35.0%
CTTAGGTGCTTACTCATATT+GGG + chr2_1:5981361-5981380 Msa0190470:CDS 35.0%
TTAGGTGCTTACTCATATTG+GGG + chr2_1:5981362-5981381 Msa0190470:CDS 35.0%
TGCTGTTGTCATGTTAAACT+TGG + chr2_1:5981568-5981587 Msa0190470:intron 35.0%
! ACTGAGTCAGATTTGGTATT+TGG + chr2_1:5981604-5981623 Msa0190470:CDS 35.0%
GGAGGAATTACAATTGTATG+TGG + chr2_1:5981625-5981644 Msa0190470:CDS 35.0%
!! ACAGCTGTGGTCTTATTTAT+AGG + chr2_1:5981821-5981840 Msa0190470:intron 35.0%
!! CAGCTGTGGTCTTATTTATA+GGG + chr2_1:5981822-5981841 Msa0190470:intron 35.0%
TGGTTACAGTTGCATGAAAT+AGG + chr2_1:5981964-5981983 Msa0190470:intron 35.0%
ACTTGTAACGGTCTAGTAAA+TGG + chr2_1:5982032-5982051 Msa0190470:intron 35.0%
TCTCAGTGACAACATTTCTT+GGG + chr2_1:5982133-5982152 Msa0190470:CDS 35.0%
!! CAATGAGATTTAGTTCTTGG+AGG - chr2_1:5982470-5982489 None:intergenic 35.0%
ATGGATAAAGGTCTCAAACT+TGG - chr2_1:5982586-5982605 None:intergenic 35.0%
! AAGTTTGAGACCTTTATCCA+TGG + chr2_1:5982585-5982604 Msa0190470:CDS 35.0%
!! TCATTGCCATACCTTTGTTT+TGG + chr2_1:5982743-5982762 Msa0190470:intron 35.0%
! TCTGTGATCGGTAATTTTCT+CGG - chr2_1:5983200-5983219 None:intergenic 35.0%
CGATCACAGAAAATGTATTG+TGG + chr2_1:5983210-5983229 Msa0190470:intron 35.0%
TTTGACATGTCACTATTGCA+AGG + chr2_1:5983359-5983378 Msa0190470:intron 35.0%
TTGACATGTCACTATTGCAA+GGG + chr2_1:5983360-5983379 Msa0190470:intron 35.0%
TCAAACCTAACCTCTCAAAT+TGG + chr2_1:5983457-5983476 Msa0190470:intron 35.0%
!! AAGCTTTTGAGAAAATGTGG+TGG - chr2_1:5983503-5983522 None:intergenic 35.0%
! TTGGTGACAATGTATAGAAG+AGG - chr2_1:5983547-5983566 None:intergenic 35.0%
GACATCTGATGTTAATGTGT+AGG + chr2_1:5983597-5983616 Msa0190470:intron 35.0%
AGGAATATTTGTGCATAGTG+TGG + chr2_1:5983617-5983636 Msa0190470:intron 35.0%
! GCATTTTTGTCAGTTGAGTT+AGG - chr2_1:5983801-5983820 None:intergenic 35.0%
TGGTTCCATGAACAAGACTT+TGG - chr2_1:5978141-5978160 None:intergenic 40.0%
GGAATCATGGATGACACTAT+GGG - chr2_1:5978164-5978183 None:intergenic 40.0%
GGTGTAAACCATGAAGTTGT+GGG - chr2_1:5978185-5978204 None:intergenic 40.0%
TGGTGTAAACCATGAAGTTG+TGG - chr2_1:5978186-5978205 None:intergenic 40.0%
CTTCATGGTTTACACCAAAG+AGG + chr2_1:5978189-5978208 Msa0190470:CDS 40.0%
!! AAGAACATAGGGTGTTGTCA+TGG + chr2_1:5978607-5978626 Msa0190470:intron 40.0%
TTTCGTCCAACTAAGTAGCT+AGG + chr2_1:5978673-5978692 Msa0190470:intron 40.0%
! GGAGCATTTGAGTTCAAATC+TGG + chr2_1:5978715-5978734 Msa0190470:intron 40.0%
! CATTTGAGTTCAAATCTGGG+TGG + chr2_1:5978719-5978738 Msa0190470:intron 40.0%
TTGAGCACTTTACAAGTGAG+AGG + chr2_1:5978805-5978824 Msa0190470:intron 40.0%
CAGCACCCATTATAATTGGA+CGG - chr2_1:5978961-5978980 None:intergenic 40.0%
! ATTTTTCCTGTTGTGTGCAG+GGG + chr2_1:5979062-5979081 Msa0190470:intron 40.0%
! TTTTATGGTTGGACTTCTCG+TGG + chr2_1:5979130-5979149 Msa0190470:CDS 40.0%
TGAGCTAGAGAGGCAAATAT+TGG - chr2_1:5979161-5979180 None:intergenic 40.0%
TAATTACCTCTGAGCTAGAG+AGG - chr2_1:5979171-5979190 None:intergenic 40.0%
!! GAACTTCAGTGTAATGGACA+AGG - chr2_1:5979510-5979529 None:intergenic 40.0%
TACAACATGCAGCACATACA+AGG - chr2_1:5979583-5979602 None:intergenic 40.0%
TAGGAGTTGGATTGTCAATG+TGG + chr2_1:5979683-5979702 Msa0190470:CDS 40.0%
TTACATGCGACAGACAGAAA+TGG - chr2_1:5979752-5979771 None:intergenic 40.0%
GCATTGTCATCAATGAAAGG+TGG - chr2_1:5979944-5979963 None:intergenic 40.0%
! TTTCATTGATGACAATGCCC+CGG + chr2_1:5979946-5979965 Msa0190470:CDS 40.0%
AAAAAGCAAACCAGAGAAGC+CGG - chr2_1:5979968-5979987 None:intergenic 40.0%
AGCAGGCAACAATTGACAAA+TGG - chr2_1:5980183-5980202 None:intergenic 40.0%
ATACCATCTGGATATGCACT+TGG + chr2_1:5980292-5980311 Msa0190470:CDS 40.0%
TGGCTATGTTTATGGTGGTT+TGG + chr2_1:5980312-5980331 Msa0190470:CDS 40.0%
!! TGGTTTGGTAAGTCTCTATC+TGG + chr2_1:5980327-5980346 Msa0190470:intron 40.0%
CCGACGGAAAACAATAATAG+GGG - chr2_1:5980608-5980627 None:intergenic 40.0%
! CCCCTATTATTGTTTTCCGT+CGG + chr2_1:5980605-5980624 Msa0190470:intron 40.0%
! ATCCAGAACTAGTTTACCGA+CGG - chr2_1:5980624-5980643 None:intergenic 40.0%
AAAGTCACGAACGCTTCTAA+CGG + chr2_1:5980815-5980834 Msa0190470:intron 40.0%
! GAGTCAGATTTGGTATTTGG+AGG + chr2_1:5981607-5981626 Msa0190470:CDS 40.0%
TTGTAAACGGTCTTCTGATC+TGG + chr2_1:5981852-5981871 Msa0190470:intron 40.0%
! CAAGTCGACTCAATATTAGG+AGG - chr2_1:5982017-5982036 None:intergenic 40.0%
CTCTCAGTGACAACATTTCT+TGG + chr2_1:5982132-5982151 Msa0190470:CDS 40.0%
CTCAGTGACAACATTTCTTG+GGG + chr2_1:5982134-5982153 Msa0190470:CDS 40.0%
!!! ACTTCTTGTTTTTGCCACTC+AGG + chr2_1:5982227-5982246 Msa0190470:CDS 40.0%
!! ATAGAAGGAAAGTACCTGAG+TGG - chr2_1:5982244-5982263 None:intergenic 40.0%
! TTGCTTGCGGTTTTCTTTTC+AGG + chr2_1:5982525-5982544 Msa0190470:intron 40.0%
! TGCTTGCGGTTTTCTTTTCA+GGG + chr2_1:5982526-5982545 Msa0190470:intron 40.0%
TCCAAAGAGATGAATGGCAA+CGG - chr2_1:5982620-5982639 None:intergenic 40.0%
CACATCTCCAAAGAGATGAA+TGG - chr2_1:5982626-5982645 None:intergenic 40.0%
!!! GTTGCTTTTCCACACATTGA+TGG + chr2_1:5982848-5982867 Msa0190470:intron 40.0%
ATGTTAGGCTTACAGCTTTC+AGG - chr2_1:5983025-5983044 None:intergenic 40.0%
ATGCATTACTTGCAAAGCAG+AGG + chr2_1:5983160-5983179 Msa0190470:intron 40.0%
TGCATTACTTGCAAAGCAGA+GGG + chr2_1:5983161-5983180 Msa0190470:intron 40.0%
! TTGACACACTATGGTAATGC+AGG + chr2_1:5983239-5983258 Msa0190470:intron 40.0%
TGCAGGATAGCATTAACAAC+TGG + chr2_1:5983256-5983275 Msa0190470:intron 40.0%
CTGGACACAATATGGTTGTT+AGG - chr2_1:5983299-5983318 None:intergenic 40.0%
AACAACCATATTGTGTCCAG+CGG + chr2_1:5983299-5983318 Msa0190470:CDS 40.0%
TTGAGAGGTTAGGTTTGACT+TGG - chr2_1:5983455-5983474 None:intergenic 40.0%
! CTTTAGAGGACCAATTTGAG+AGG - chr2_1:5983470-5983489 None:intergenic 40.0%
TCGGTCTTCTCTTGAAGTAA+CGG - chr2_1:5983684-5983703 None:intergenic 40.0%
ATCATGGATGACACTATGGG+TGG - chr2_1:5978161-5978180 None:intergenic 45.0%
GGGAATCATGGATGACACTA+TGG - chr2_1:5978165-5978184 None:intergenic 45.0%
CCATGAAGTTGTGGGAATCA+TGG - chr2_1:5978177-5978196 None:intergenic 45.0%
CCATGATTCCCACAACTTCA+TGG + chr2_1:5978174-5978193 Msa0190470:CDS 45.0%
CTCCTATTTCCATCCATGCT+GGG + chr2_1:5978250-5978269 Msa0190470:intron 45.0%
TACCCAGCATGGATGGAAAT+AGG - chr2_1:5978255-5978274 None:intergenic 45.0%
! TGTTACTTACCCAGCATGGA+TGG - chr2_1:5978262-5978281 None:intergenic 45.0%
! CCTTTGTTACTTACCCAGCA+TGG - chr2_1:5978266-5978285 None:intergenic 45.0%
CCATGCTGGGTAAGTAACAA+AGG + chr2_1:5978263-5978282 Msa0190470:intron 45.0%
CAAGGAGCAATAGCTAGCAA+TGG + chr2_1:5978513-5978532 Msa0190470:CDS 45.0%
CTTGAGCCTAGCTACTTAGT+TGG - chr2_1:5978682-5978701 None:intergenic 45.0%
ACTAAGTAGCTAGGCTCAAG+TGG + chr2_1:5978682-5978701 Msa0190470:intron 45.0%
AGGCTCAAGTGGTTCACATT+CGG + chr2_1:5978693-5978712 Msa0190470:intron 45.0%
CACACTGCTTAGAAAAGTCG+AGG + chr2_1:5978782-5978801 Msa0190470:intron 45.0%
TGGTGTTCAACTCACTTGTG+TGG + chr2_1:5978867-5978886 Msa0190470:intron 45.0%
!! AGGGGAGTATCATCCACATT+AGG - chr2_1:5978903-5978922 None:intergenic 45.0%
GTAAAGTCTAGCCAAGTGGT+GGG - chr2_1:5978931-5978950 None:intergenic 45.0%
AGTAAAGTCTAGCCAAGTGG+TGG - chr2_1:5978932-5978951 None:intergenic 45.0%
! TTTTTCCTGTTGTGTGCAGG+GGG + chr2_1:5979063-5979082 Msa0190470:intron 45.0%
! TATTTGCCTCTCTAGCTCAG+AGG + chr2_1:5979162-5979181 Msa0190470:CDS 45.0%
! ACTCTTGCGACCTTCTTTTG+TGG + chr2_1:5979706-5979725 Msa0190470:CDS 45.0%
TTCTGTCTGTCGCATGTAAG+TGG + chr2_1:5979753-5979772 Msa0190470:intron 45.0%
TGTCGCATGTAAGTGGTACT+GGG + chr2_1:5979760-5979779 Msa0190470:intron 45.0%
!! GGGGCATTGTCATCAATGAA+AGG - chr2_1:5979947-5979966 None:intergenic 45.0%
AAAAGCAAACCAGAGAAGCC+GGG - chr2_1:5979967-5979986 None:intergenic 45.0%
TAGCCAAGTGCATATCCAGA+TGG - chr2_1:5980298-5980317 None:intergenic 45.0%
GCACTTGGCTATGTTTATGG+TGG + chr2_1:5980307-5980326 Msa0190470:CDS 45.0%
TTGGTTGGCGTTATGCATTC+TGG + chr2_1:5980482-5980501 Msa0190470:CDS 45.0%
TGGTTGGCGTTATGCATTCT+GGG + chr2_1:5980483-5980502 Msa0190470:CDS 45.0%
TTCCGTCGGTAAACTAGTTC+TGG + chr2_1:5980619-5980638 Msa0190470:intron 45.0%
!! GGTAAACTAGTTCTGGATCC+AGG + chr2_1:5980626-5980645 Msa0190470:intron 45.0%
ACAGTTGCATCAGGAGTTCA+TGG + chr2_1:5980689-5980708 Msa0190470:CDS 45.0%
TGATGCAGACAGTAGATCAG+TGG - chr2_1:5981142-5981161 None:intergenic 45.0%
TTGGCAGACTGAGTCAGATT+TGG + chr2_1:5981597-5981616 Msa0190470:intron 45.0%
!! ATGTGGAATAGTGGGCACAT+TGG + chr2_1:5981642-5981661 Msa0190470:CDS 45.0%
! ATTGGCTGGAGGATTTGTTC+TGG + chr2_1:5981660-5981679 Msa0190470:CDS 45.0%
CAGCTGTTTAGTGTGGAACT+GGG - chr2_1:5981808-5981827 None:intergenic 45.0%
ACAGCTGTTTAGTGTGGAAC+TGG - chr2_1:5981809-5981828 None:intergenic 45.0%
AGTTCCACACTAAACAGCTG+TGG + chr2_1:5981808-5981827 Msa0190470:intron 45.0%
AAGACCACAGCTGTTTAGTG+TGG - chr2_1:5981815-5981834 None:intergenic 45.0%
!! CTTGGGGCAGCATTTTGTTT+TGG + chr2_1:5982150-5982169 Msa0190470:CDS 45.0%
AGGTACTTTCCTTCTATGCG+AGG + chr2_1:5982247-5982266 Msa0190470:intron 45.0%
AGTGATCTTCCTCGCATAGA+AGG - chr2_1:5982259-5982278 None:intergenic 45.0%
GTAGACATGGCCATGGATAA+AGG - chr2_1:5982598-5982617 None:intergenic 45.0%
ATGAATGGCAACGGTAGACA+TGG - chr2_1:5982611-5982630 None:intergenic 45.0%
ACCGTTGCCATTCATCTCTT+TGG + chr2_1:5982616-5982635 Msa0190470:CDS 45.0%
TGTGTGTGTCTGTGAATGTG+GGG - chr2_1:5982706-5982725 None:intergenic 45.0%
GTGTGTGTGTCTGTGAATGT+GGG - chr2_1:5982707-5982726 None:intergenic 45.0%
CCTGTGTTTACTAGAACCGT+TGG - chr2_1:5982780-5982799 None:intergenic 45.0%
! CCAACGGTTCTAGTAAACAC+AGG + chr2_1:5982777-5982796 Msa0190470:intron 45.0%
ATTACTTGCAAAGCAGAGGG+AGG + chr2_1:5983164-5983183 Msa0190470:intron 45.0%
TTACTTGCAAAGCAGAGGGA+GGG + chr2_1:5983165-5983184 Msa0190470:intron 45.0%
ATAAACCATATTCCAGCCGC+TGG - chr2_1:5983318-5983337 None:intergenic 45.0%
GCGGCTGGAATATGGTTTAT+CGG + chr2_1:5983318-5983337 Msa0190470:CDS 45.0%
GAGGACCAATTTGAGAGGTT+AGG - chr2_1:5983465-5983484 None:intergenic 45.0%
CCAGCATGGATGGAAATAGG+AGG - chr2_1:5978252-5978271 None:intergenic 50.0%
CCTCCTATTTCCATCCATGC+TGG + chr2_1:5978249-5978268 Msa0190470:intron 50.0%
GGCTCAAGTGGTTCACATTC+GGG + chr2_1:5978694-5978713 Msa0190470:intron 50.0%
AATCTGGGTGGAGCAATCCT+TGG + chr2_1:5978731-5978750 Msa0190470:intron 50.0%
TCACGTGCTACACAACACCA+AGG - chr2_1:5978751-5978770 None:intergenic 50.0%
! TGGTTGCTCTGAGCCTAATG+TGG + chr2_1:5978887-5978906 Msa0190470:intron 50.0%
! TTTTCCTGTTGTGTGCAGGG+GGG + chr2_1:5979064-5979083 Msa0190470:intron 50.0%
CTGTCGCATGTAAGTGGTAC+TGG + chr2_1:5979759-5979778 Msa0190470:intron 50.0%
GTCGCATGTAAGTGGTACTG+GGG + chr2_1:5979761-5979780 Msa0190470:intron 50.0%
! CTGTATAGGCTGGTTGGTGT+TGG + chr2_1:5979893-5979912 Msa0190470:intron 50.0%
AAAGCAAACCAGAGAAGCCG+GGG - chr2_1:5979966-5979985 None:intergenic 50.0%
GTACCTGACACAGTTGCATC+AGG + chr2_1:5980680-5980699 Msa0190470:CDS 50.0%
ACTCCTGATGCAACTGTGTC+AGG - chr2_1:5980686-5980705 None:intergenic 50.0%
CTGGGCGCACATAATTCTTG+TGG - chr2_1:5981790-5981809 None:intergenic 50.0%
!! GCGGTTTTCTTTTCAGGGTC+CGG + chr2_1:5982531-5982550 Msa0190470:intron 50.0%
ACCTGGAGAACTCCAACAAG+GGG - chr2_1:5982658-5982677 None:intergenic 50.0%
GACCTGGAGAACTCCAACAA+GGG - chr2_1:5982659-5982678 None:intergenic 50.0%
TGACCTGGAGAACTCCAACA+AGG - chr2_1:5982660-5982679 None:intergenic 50.0%
GGATCTGTAAAAGGCTGACC+TGG - chr2_1:5982675-5982694 None:intergenic 50.0%
GGTGTGTGTGTCTGTGAATG+TGG - chr2_1:5982708-5982727 None:intergenic 50.0%
! GTGGTGATGCGAGACTTTAG+AGG - chr2_1:5983484-5983503 None:intergenic 50.0%
!! AGCCAAGTGGTGGGTCACAA+GGG - chr2_1:5978922-5978941 None:intergenic 55.0%
!! TAGCCAAGTGGTGGGTCACA+AGG - chr2_1:5978923-5978942 None:intergenic 55.0%
AAATCCCCCCTGCACACAAC+AGG - chr2_1:5979071-5979090 None:intergenic 55.0%
!! TAGGCTGGTTGGTGTTGGTG+AGG + chr2_1:5979898-5979917 Msa0190470:intron 55.0%
!! GGAATAGTGGGCACATTGGC+TGG + chr2_1:5981646-5981665 Msa0190470:CDS 55.0%
!! ATAGTGGGCACATTGGCTGG+AGG + chr2_1:5981649-5981668 Msa0190470:CDS 55.0%
ACTCCAACAAGGGGTGAGGA+AGG - chr2_1:5982649-5982668 None:intergenic 55.0%
GAGAACTCCAACAAGGGGTG+AGG - chr2_1:5982653-5982672 None:intergenic 55.0%
ACCCCTTGTTGGAGTTCTCC+AGG + chr2_1:5982654-5982673 Msa0190470:CDS 55.0%
TGTGTCTGTGAATGTGGGGC+GGG - chr2_1:5982702-5982721 None:intergenic 55.0%
GTGTGTCTGTGAATGTGGGG+CGG - chr2_1:5982703-5982722 None:intergenic 55.0%
ACCATATTGTGTCCAGCGGC+TGG + chr2_1:5983303-5983322 Msa0190470:CDS 55.0%
TCCAGCCGCTGGACACAATA+TGG - chr2_1:5983307-5983326 None:intergenic 55.0%
TGTGTCCAGCGGCTGGAATA+TGG + chr2_1:5983310-5983329 Msa0190470:CDS 55.0%
TCCCCTTGTGACCCACCACT+TGG + chr2_1:5978917-5978936 Msa0190470:intron 60.0%
!! GCCAAGTGGTGGGTCACAAG+GGG - chr2_1:5978921-5978940 None:intergenic 60.0%
TGACAATGCCCCGGCTTCTC+TGG + chr2_1:5979955-5979974 Msa0190470:CDS 60.0%
GGCAACGGTAGACATGGCCA+TGG - chr2_1:5982605-5982624 None:intergenic 60.0%
GTGCCTTCCTCACCCCTTGT+TGG + chr2_1:5982643-5982662 Msa0190470:CDS 60.0%
TGTCTGTGAATGTGGGGCGG+GGG - chr2_1:5982700-5982719 None:intergenic 60.0%
GTGTCTGTGAATGTGGGGCG+GGG - chr2_1:5982701-5982720 None:intergenic 60.0%
GCAAAGCAGAGGGAGGGAAG+TGG + chr2_1:5983171-5983190 Msa0190470:intron 60.0%
AAGCAGAGGGAGGGAAGTGG+AGG + chr2_1:5983174-5983193 Msa0190470:intron 60.0%
GCGGGGGGGGGATCTGTAAA+AGG - chr2_1:5982684-5982703 None:intergenic 65.0%
TCTGTGAATGTGGGGCGGGG+GGG - chr2_1:5982698-5982717 None:intergenic 65.0%
GTCTGTGAATGTGGGGCGGG+GGG - chr2_1:5982699-5982718 None:intergenic 65.0%
TGTGAATGTGGGGCGGGGGG+GGG - chr2_1:5982696-5982715 None:intergenic 70.0%
CTGTGAATGTGGGGCGGGGG+GGG - chr2_1:5982697-5982716 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 5977946 5983918 5977946 ID=Msa0190470;Name=Msa0190470
chr2_1 mRNA 5977946 5983918 5977946 ID=Msa0190470-mRNA-1;Parent=Msa0190470;Name=Msa0190470-mRNA-1;_AED=0.21;_eAED=0.21;_QI=179|1|1|1|0.86|0.87|16|169|510
chr2_1 exon 5977946 5978210 5977946 ID=Msa0190470-mRNA-1:exon:2675;Parent=Msa0190470-mRNA-1
chr2_1 exon 5978467 5978559 5978467 ID=Msa0190470-mRNA-1:exon:2676;Parent=Msa0190470-mRNA-1
chr2_1 exon 5979082 5979183 5979082 ID=Msa0190470-mRNA-1:exon:2677;Parent=Msa0190470-mRNA-1
chr2_1 exon 5979663 5979767 5979663 ID=Msa0190470-mRNA-1:exon:2678;Parent=Msa0190470-mRNA-1
chr2_1 exon 5979901 5979976 5979901 ID=Msa0190470-mRNA-1:exon:2679;Parent=Msa0190470-mRNA-1
chr2_1 exon 5980259 5980333 5980259 ID=Msa0190470-mRNA-1:exon:2680;Parent=Msa0190470-mRNA-1
chr2_1 exon 5980469 5980571 5980469 ID=Msa0190470-mRNA-1:exon:2681;Parent=Msa0190470-mRNA-1
chr2_1 exon 5980648 5980710 5980648 ID=Msa0190470-mRNA-1:exon:2682;Parent=Msa0190470-mRNA-1
chr2_1 exon 5980819 5980900 5980819 ID=Msa0190470-mRNA-1:exon:2683;Parent=Msa0190470-mRNA-1
chr2_1 exon 5981028 5981125 5981028 ID=Msa0190470-mRNA-1:exon:2684;Parent=Msa0190470-mRNA-1
chr2_1 exon 5981339 5981415 5981339 ID=Msa0190470-mRNA-1:exon:2685;Parent=Msa0190470-mRNA-1
chr2_1 exon 5981604 5981717 5981604 ID=Msa0190470-mRNA-1:exon:2686;Parent=Msa0190470-mRNA-1
chr2_1 exon 5982129 5982248 5982129 ID=Msa0190470-mRNA-1:exon:2687;Parent=Msa0190470-mRNA-1
chr2_1 exon 5982547 5982675 5982547 ID=Msa0190470-mRNA-1:exon:2688;Parent=Msa0190470-mRNA-1
chr2_1 exon 5983261 5983339 5983261 ID=Msa0190470-mRNA-1:exon:2689;Parent=Msa0190470-mRNA-1
chr2_1 exon 5983619 5983918 5983619 ID=Msa0190470-mRNA-1:exon:2690;Parent=Msa0190470-mRNA-1
chr2_1 five_prime_UTR 5977946 5978124 5977946 ID=Msa0190470-mRNA-1:five_prime_utr;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5978125 5978210 5978125 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5978467 5978559 5978467 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5979082 5979183 5979082 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5979663 5979767 5979663 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5979901 5979976 5979901 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5980259 5980333 5980259 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5980469 5980571 5980469 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5980648 5980710 5980648 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5980819 5980900 5980819 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5981028 5981125 5981028 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5981339 5981415 5981339 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5981604 5981717 5981604 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5982129 5982248 5982129 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5982547 5982675 5982547 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5983261 5983339 5983261 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 CDS 5983619 5983749 5983619 ID=Msa0190470-mRNA-1:cds;Parent=Msa0190470-mRNA-1
chr2_1 three_prime_UTR 5983750 5983918 5983750 ID=Msa0190470-mRNA-1:three_prime_utr;Parent=Msa0190470-mRNA-1
Gene Sequence

>Msa0190470

ATGCAAGTAACATCCAAAGTCTTGTTCATGGAACCACCCATAGTGTCATCCATGATTCCCACAACTTCATGGTTTACACCAAAGAGGTTACTTGGTATATTTTGTGTGATTAATTTGTTAAACTATTTGGATCAAGGAGCAATAGCTAGCAATGGTGTTAATGGAAGTACAGGAATACAGGGGGATTTTAACTTGAACAATTTTGAAGATGGAGTTTTATCATCTGCTTTTATGGTTGGACTTCTCGTGGCTTCTCCAATATTTGCCTCTCTAGCTCAGAGTGTAAATCCATTTAGACTTATAGGAGTTGGATTGTCAATGTGGACTCTTGCGACCTTCTTTTGTGGTTTTTCTTTCAATTTCTGGTCCATTTCTGTCTGTCGCATGCTGGTTGGTGTTGGTGAGGCTTCGTTTATAAGTTTAGCACCACCTTTCATTGATGACAATGCCCCGGCTTCTCTGAAAACAACATGGCTCGCAATGTTTTACATGTGTATACCATCTGGATATGCACTTGGCTATGTTTATGGTGGTTTGATTGGAAGTAATTTTGGTTGGCGTTATGCATTCTGGGTAGAGTCTATATTGATGCTTCCATTTGCTATTTCAGGATTTTTAATGAAGCCTTTACAGTTGAAAGGTTTTGTTCCTGTTGATTTGATAAAGGCACAAGTACCTGACACAGTTGCATCAGGAGTTCATGTCACGAACGCTTCTAACGGCAGAGATGAGTCATTGTCTTTTAAGGAAGAATTCAGAGATAAAAGCTCAAATGACCAATCCAAGTCAAAATCTGCAACGAAAATGCTTGATCAGTTCTCAAGATTTTTTATTGATATGAAAGCGCTCCTGCTTGATAATGTTTATATTATCAATGTTCTAGGTCACATAGCGTACAACTTTGTCTTAGGTGCTTACTCATATTGGGGTCCCAAAGTTGTCTACAATATTTATAACATGACTGAGTCAGATTTGGTATTTGGAGGAATTACAATTGTATGTGGAATAGTGGGCACATTGGCTGGAGGATTTGTTCTGGATTATATGAGTAACACCTTATCAAATGCATTTAAGCTTCTCTCAGTGACAACATTTCTTGGGGCAGCATTTTGTTTTGGAGCCTTCTTATGCAGAAATGTGAATGGCTTTCTTGTTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGGGTCCGGTGAATTATGTATGTCTTCATTGTGTTAAACCAAGTTTGAGACCTTTATCCATGGCCATGTCTACCGTTGCCATTCATCTCTTTGGAGATGTGCCTTCCTCACCCCTTGTTGGAGTTCTCCAGGATAGCATTAACAACTGGAGAACAACTGCATTGATCCTAACAACCATATTGTGTCCAGCGGCTGGAATATGGTTTATCGGAATATTTGTGCATAGTGTGGATAAATTTGAAGATGACAGTGAACAACAAGTGTGCACTATACCGTTACTTCAAGAGAAGACCGAAGAAACATCAATATCTCATGCACAATCTCAATCTCAAGAATGTTGA

Protein sequence

>Msa0190470

MQVTSKVLFMEPPIVSSMIPTTSWFTPKRLLGIFCVINLLNYLDQGAIASNGVNGSTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAQSVNPFRLIGVGLSMWTLATFFCGFSFNFWSISVCRMLVGVGEASFISLAPPFIDDNAPASLKTTWLAMFYMCIPSGYALGYVYGGLIGSNFGWRYAFWVESILMLPFAISGFLMKPLQLKGFVPVDLIKAQVPDTVASGVHVTNASNGRDESLSFKEEFRDKSSNDQSKSKSATKMLDQFSRFFIDMKALLLDNVYIINVLGHIAYNFVLGAYSYWGPKVVYNIYNMTESDLVFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKLLSVTTFLGAAFCFGAFLCRNVNGFLVLFSIGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHLFGDVPSSPLVGVLQDSINNWRTTALILTTILCPAAGIWFIGIFVHSVDKFEDDSEQQVCTIPLLQEKTEETSISHAQSQSQEC*