AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111650 MtrunA17_Chr7g0244961 98.222 225 4 0 1 225 38 262 3.42e-163 451
Msa1111650 MtrunA17_Chr3g0139261 39.234 209 124 1 6 211 7 215 8.33e-46 152
Msa1111650 MtrunA17_Chr1g0147511 38.756 209 125 1 6 211 7 215 3.51e-45 150
Msa1111650 MtrunA17_Chr1g0188581 36.493 211 129 1 6 211 7 217 4.70e-42 142
Msa1111650 MtrunA17_Chr6g0477471 35.407 209 132 1 6 211 7 215 9.80e-37 129
Msa1111650 MtrunA17_Chr6g0477681 32.075 212 141 1 3 211 4 215 2.35e-33 120
Msa1111650 MtrunA17_Chr6g0477661 30.531 226 149 2 3 225 4 224 1.88e-32 117
Msa1111650 MtrunA17_Chr5g0428761 27.570 214 145 2 7 211 6 218 5.85e-27 103
Msa1111650 MtrunA17_Chr8g0392461 31.472 197 123 3 7 198 6 195 3.33e-25 99.0
Msa1111650 MtrunA17_Chr8g0392481 34.940 83 54 0 1 83 1 83 9.52e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111650 AT5G43180.1 48.246 228 100 2 1 210 1 228 8.77e-62 193
Msa1111650 AT4G31330.1 36.916 214 126 2 6 210 7 220 1.20e-40 139
Msa1111650 AT5G10580.3 35.455 220 131 1 3 211 4 223 2.44e-40 139
Msa1111650 AT5G10580.1 35.455 220 131 1 3 211 4 223 3.20e-40 138
Msa1111650 AT5G10580.4 35.455 220 131 1 3 211 4 223 3.20e-40 138
Msa1111650 AT5G24600.1 31.963 219 132 3 6 209 5 221 2.76e-28 107
Msa1111650 AT5G24600.2 31.963 219 132 3 6 209 5 221 2.99e-28 107
Msa1111650 AT5G24790.1 31.878 229 147 2 6 225 7 235 3.29e-28 107
Msa1111650 AT5G10580.2 31.844 179 111 1 3 170 4 182 6.63e-24 94.7
Msa1111650 AT3G18215.1 27.230 213 152 1 7 216 7 219 3.33e-20 86.3
Msa1111650 AT5G46060.1 26.341 205 150 1 6 209 9 213 2.53e-13 67.4

Find 55 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACAAAGTGTATTGGAAAA+AGG 0.170764 7_3:+57392661 Msa1111650:CDS
GATGGGAGAAGGTATTTATT+TGG 0.189582 7_3:+57391668 Msa1111650:exon
AAACCTTCACGCACAACTTA+TGG 0.244506 7_3:+57391765 Msa1111650:CDS
TTGCTATTCCTTTGATGCTT+TGG 0.254308 7_3:+57392722 Msa1111650:CDS
AACCCCTAAGGCCAAAATTT+AGG 0.268543 7_3:+57391614 Msa1111650:five_prime_UTR
TTTGTGACCCTGTGGGAATT+TGG 0.296432 7_3:-57392818 None:intergenic
TTGTGACCCTGTGGGAATTT+GGG 0.299105 7_3:-57392817 None:intergenic
GCCTTAGGGGTTGGTTTGGT+TGG 0.308087 7_3:-57391603 None:intergenic
GCGTGAAGGTTTGTTCTTGA+TGG 0.331854 7_3:-57391754 None:intergenic
GATGCAGGGTGATGATAAAA+AGG 0.334165 7_3:+57392342 Msa1111650:intron
CCTTTGATGCTTTGGATGTT+GGG 0.346934 7_3:+57392730 Msa1111650:CDS
TCCTTTGATGCTTTGGATGT+TGG 0.347676 7_3:+57392729 Msa1111650:CDS
TTTGGCCTTAGGGGTTGGTT+TGG 0.368270 7_3:-57391607 None:intergenic
GAAGTGTTCCATGTGTGAAT+TGG 0.394861 7_3:+57392924 Msa1111650:three_prime_UTR
CTTATGGAATTGATAAGTTA+AGG 0.396057 7_3:+57391781 Msa1111650:CDS
AAGGCTCAAAGGGACTAATA+TGG 0.413031 7_3:-57391694 None:intergenic
ATTGGGATTACACAGTATAT+TGG 0.414048 7_3:+57392942 Msa1111650:three_prime_UTR
CTAATCAACAAACAAATTGA+TGG 0.416486 7_3:-57392550 None:intergenic
TGCTTCATCACTAAGGAAGA+TGG 0.429291 7_3:+57391650 Msa1111650:exon
ATAAGTTAAGGAGGACTACT+TGG 0.433159 7_3:+57391793 Msa1111650:CDS
TTGGGGTCTTAACGTAAATC+AGG 0.440650 7_3:+57391812 Msa1111650:CDS
GTTTACAAGAATTGTTATAG+TGG 0.442990 7_3:-57392419 None:intergenic
AAGTGTTCCATGTGTGAATT+GGG 0.444471 7_3:+57392925 Msa1111650:three_prime_UTR
TGCATCAATTAGAAATCCTA+TGG 0.457940 7_3:-57392593 None:intergenic
ATTAATTTCTAGCTATAGCT+AGG 0.458043 7_3:-57392862 None:intergenic
TTGTAATGAAAAGGCTCAAA+GGG 0.468311 7_3:-57391704 None:intergenic
GGTAAACTATTGTAATGAAA+AGG 0.473865 7_3:-57391713 None:intergenic
ATGGTGAACCATACTTCAAA+AGG 0.478925 7_3:-57392531 None:intergenic
TAGTTTCTTATGCAGCTCAA+TGG 0.486320 7_3:+57392570 Msa1111650:CDS
CAAACAAACCAAAGCTATTG+AGG 0.487539 7_3:-57392773 None:intergenic
CCCAACATCCAAAGCATCAA+AGG 0.490638 7_3:-57392730 None:intergenic
TAAGTTAAGGAGGACTACTT+GGG 0.526892 7_3:+57391794 Msa1111650:CDS
AGTATATTGGTGGTTGAAAG+TGG 0.527619 7_3:+57392955 Msa1111650:three_prime_UTR
TTATGCAGCTCAATGGCCAT+AGG 0.528060 7_3:+57392577 Msa1111650:CDS
GGGATTACACAGTATATTGG+TGG 0.538985 7_3:+57392945 Msa1111650:three_prime_UTR
GGGTTACACACAAAGTGTAT+TGG 0.547539 7_3:+57392654 Msa1111650:CDS
GCTTCATCACTAAGGAAGAT+GGG 0.552849 7_3:+57391651 Msa1111650:exon
ATTGTAATGAAAAGGCTCAA+AGG 0.570402 7_3:-57391705 None:intergenic
TTATGTCCCCAAATTCCCAC+AGG 0.570723 7_3:+57392810 Msa1111650:CDS
TCTATTACCAACAAAAGCTA+AGG 0.570747 7_3:-57392689 None:intergenic
ACCAACCAAACCAACCCCTA+AGG 0.573569 7_3:+57391602 Msa1111650:five_prime_UTR
TATAACAATTCTTGTAAACA+TGG 0.574398 7_3:+57392423 Msa1111650:CDS
ATTCCATAAGTTGTGCGTGA+AGG 0.578392 7_3:-57391768 None:intergenic
GGTCATAAGAGTGTTCCTCA+TGG 0.580413 7_3:-57392383 None:intergenic
TATAGTGGCTGTGAGTATTG+TGG 0.587578 7_3:-57392404 None:intergenic
TGTGACCCTGTGGGAATTTG+GGG 0.596294 7_3:-57392816 None:intergenic
TCACTAAGGAAGATGGGAGA+AGG 0.612483 7_3:+57391657 Msa1111650:exon
ATGGAATTGATAAGTTAAGG+AGG 0.638780 7_3:+57391784 Msa1111650:CDS
TACATCGTTTGTGACCCTGT+GGG 0.664907 7_3:-57392825 None:intergenic
GTGTAATCCCAATTCACACA+TGG 0.668299 7_3:-57392932 None:intergenic
AAGTTAAGGAGGACTACTTG+GGG 0.675885 7_3:+57391795 Msa1111650:CDS
TGCTATGTGTACAAACCATG+AGG 0.692474 7_3:+57392368 Msa1111650:CDS
GTACATCGTTTGTGACCCTG+TGG 0.692679 7_3:-57392826 None:intergenic
TGGTGTAGCAGAGAAAAGCA+TGG 0.714429 7_3:-57391734 None:intergenic
TATGTCCCCAAATTCCCACA+GGG 0.731386 7_3:+57392811 Msa1111650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAACCTAAATTT+TGG - chr7_3:57391628-57391647 None:intergenic 10.0%
!!! AAAAAAAAAAACCTAAATTT+TGG - chr7_3:57391628-57391647 None:intergenic 10.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_3:57392246-57392265 Msa1111650:intron 15.0%
!! TTAAAAAAAATACTAATGCA+TGG + chr7_3:57392246-57392265 Msa1111650:intron 15.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_3:57391879-57391898 Msa1111650:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_3:57391977-57391996 Msa1111650:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_3:57392040-57392059 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_3:57392047-57392066 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_3:57392134-57392153 Msa1111650:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_3:57392242-57392261 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_3:57392423-57392442 Msa1111650:CDS 20.0%
!!! AATTTTTTGATGAATGCTTA+TGG + chr7_3:57392616-57392635 Msa1111650:CDS 20.0%
!! ATTGATGAGTAAAATTGATT+TGG + chr7_3:57391879-57391898 Msa1111650:intron 20.0%
!!! TTCATCTACAATCAATTTTT+AGG + chr7_3:57391977-57391996 Msa1111650:intron 20.0%
!! AATATTTGAAAACAGGAAAT+CGG - chr7_3:57392040-57392059 None:intergenic 20.0%
!! ATGTGAAAATATTTGAAAAC+AGG - chr7_3:57392047-57392066 None:intergenic 20.0%
!!! AATTGTTTTTTAGAAATCAG+AGG + chr7_3:57392134-57392153 Msa1111650:intron 20.0%
!!! TTAGTATTTTTTTTAACTCG+TGG - chr7_3:57392242-57392261 None:intergenic 20.0%
!! TATAACAATTCTTGTAAACA+TGG + chr7_3:57392423-57392442 Msa1111650:CDS 20.0%
!!! AATTTTTTGATGAATGCTTA+TGG + chr7_3:57392616-57392635 Msa1111650:CDS 20.0%
! GGTAAACTATTGTAATGAAA+AGG - chr7_3:57391716-57391735 None:intergenic 25.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_3:57391781-57391800 Msa1111650:CDS 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_3:57392068-57392087 Msa1111650:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_3:57392083-57392102 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_3:57392272-57392291 Msa1111650:intron 25.0%
! GTTTACAAGAATTGTTATAG+TGG - chr7_3:57392422-57392441 None:intergenic 25.0%
! CTAATCAACAAACAAATTGA+TGG - chr7_3:57392553-57392572 None:intergenic 25.0%
!!! ATTAATTTCTAGCTATAGCT+AGG - chr7_3:57392865-57392884 None:intergenic 25.0%
! GGTAAACTATTGTAATGAAA+AGG - chr7_3:57391716-57391735 None:intergenic 25.0%
! CTTATGGAATTGATAAGTTA+AGG + chr7_3:57391781-57391800 Msa1111650:CDS 25.0%
!! AAACTTTGAAAACCGAAAAT+AGG + chr7_3:57392068-57392087 Msa1111650:intron 25.0%
!! CCATATTTTCAACCTATTTT+CGG - chr7_3:57392083-57392102 None:intergenic 25.0%
! TAGTATATTTCCTCATGATT+TGG + chr7_3:57392272-57392291 Msa1111650:intron 25.0%
! GTTTACAAGAATTGTTATAG+TGG - chr7_3:57392422-57392441 None:intergenic 25.0%
! CTAATCAACAAACAAATTGA+TGG - chr7_3:57392553-57392572 None:intergenic 25.0%
!!! ATTAATTTCTAGCTATAGCT+AGG - chr7_3:57392865-57392884 None:intergenic 25.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_3:57391620-57391639 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_3:57391621-57391640 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_3:57391643-57391662 Msa1111650:five_prime_UTR 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_3:57391707-57391726 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_3:57391708-57391727 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_3:57391784-57391803 Msa1111650:CDS 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_3:57392080-57392099 Msa1111650:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_3:57392102-57392121 Msa1111650:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_3:57392177-57392196 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_3:57392178-57392197 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_3:57392306-57392325 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_3:57392326-57392345 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_3:57392328-57392347 Msa1111650:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_3:57392486-57392505 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_3:57392487-57392506 Msa1111650:CDS 30.0%
!!! ACAATCTTCCTTTTGAAGTA+TGG + chr7_3:57392523-57392542 Msa1111650:CDS 30.0%
TGCATCAATTAGAAATCCTA+TGG - chr7_3:57392596-57392615 None:intergenic 30.0%
!!! CTTATGGAGATTTTTTGTCT+GGG + chr7_3:57392632-57392651 Msa1111650:CDS 30.0%
!!! TTATGGAGATTTTTTGTCTG+GGG + chr7_3:57392633-57392652 Msa1111650:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_3:57392661-57392680 Msa1111650:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_3:57392662-57392681 Msa1111650:CDS 30.0%
TCTATTACCAACAAAAGCTA+AGG - chr7_3:57392692-57392711 None:intergenic 30.0%
!!! ATTTTTAGCCTCAATAGCTT+TGG + chr7_3:57392765-57392784 Msa1111650:CDS 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_3:57392942-57392961 Msa1111650:three_prime_UTR 30.0%
!!! AAACCTAAATTTTGGCCTTA+GGG - chr7_3:57391620-57391639 None:intergenic 30.0%
!! AAAACCTAAATTTTGGCCTT+AGG - chr7_3:57391621-57391640 None:intergenic 30.0%
! TTTTTCTTGCTTCATCACTA+AGG + chr7_3:57391643-57391662 Msa1111650:five_prime_UTR 30.0%
TTGTAATGAAAAGGCTCAAA+GGG - chr7_3:57391707-57391726 None:intergenic 30.0%
ATTGTAATGAAAAGGCTCAA+AGG - chr7_3:57391708-57391727 None:intergenic 30.0%
ATGGAATTGATAAGTTAAGG+AGG + chr7_3:57391784-57391803 Msa1111650:CDS 30.0%
! CCGAAAATAGGTTGAAAATA+TGG + chr7_3:57392080-57392099 Msa1111650:intron 30.0%
GTGTAGCACTTTAATTGAAA+CGG + chr7_3:57392102-57392121 Msa1111650:intron 30.0%
TTCGAGTCGAGTTATATAAA+GGG - chr7_3:57392177-57392196 None:intergenic 30.0%
ATTCGAGTCGAGTTATATAA+AGG - chr7_3:57392178-57392197 None:intergenic 30.0%
AGGAACAGTGAAAACTATTA+TGG - chr7_3:57392306-57392325 None:intergenic 30.0%
CATCATAACAAACCAATTCA+AGG - chr7_3:57392326-57392345 None:intergenic 30.0%
!! AATTGGTTTGTTATGATGCA+GGG + chr7_3:57392328-57392347 Msa1111650:intron 30.0%
AAAATCCACTGCTAAAAAGA+TGG - chr7_3:57392486-57392505 None:intergenic 30.0%
!! CTTTTTAGCAGTGGATTTTT+TGG + chr7_3:57392487-57392506 Msa1111650:CDS 30.0%
!!! ACAATCTTCCTTTTGAAGTA+TGG + chr7_3:57392523-57392542 Msa1111650:CDS 30.0%
TGCATCAATTAGAAATCCTA+TGG - chr7_3:57392596-57392615 None:intergenic 30.0%
!!! CTTATGGAGATTTTTTGTCT+GGG + chr7_3:57392632-57392651 Msa1111650:CDS 30.0%
!!! TTATGGAGATTTTTTGTCTG+GGG + chr7_3:57392633-57392652 Msa1111650:CDS 30.0%
ACACAAAGTGTATTGGAAAA+AGG + chr7_3:57392661-57392680 Msa1111650:CDS 30.0%
CACAAAGTGTATTGGAAAAA+GGG + chr7_3:57392662-57392681 Msa1111650:CDS 30.0%
TCTATTACCAACAAAAGCTA+AGG - chr7_3:57392692-57392711 None:intergenic 30.0%
!!! ATTTTTAGCCTCAATAGCTT+TGG + chr7_3:57392765-57392784 Msa1111650:CDS 30.0%
ATTGGGATTACACAGTATAT+TGG + chr7_3:57392942-57392961 Msa1111650:three_prime_UTR 30.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_3:57391619-57391638 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_3:57391668-57391687 Msa1111650:exon 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_3:57391793-57391812 Msa1111650:CDS 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_3:57391794-57391813 Msa1111650:CDS 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_3:57391941-57391960 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_3:57392182-57392201 Msa1111650:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_3:57392183-57392202 Msa1111650:intron 35.0%
!! GTGTTATTTCGAAGTCACAT+CGG - chr7_3:57392210-57392229 None:intergenic 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_3:57392279-57392298 Msa1111650:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_3:57392311-57392330 Msa1111650:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_3:57392327-57392346 Msa1111650:intron 35.0%
ATGGTGAACCATACTTCAAA+AGG - chr7_3:57392534-57392553 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_3:57392570-57392589 Msa1111650:CDS 35.0%
!!! GCTTATGGAGATTTTTTGTC+TGG + chr7_3:57392631-57392650 Msa1111650:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+GGG + chr7_3:57392634-57392653 Msa1111650:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_3:57392722-57392741 Msa1111650:CDS 35.0%
CAAACAAACCAAAGCTATTG+AGG - chr7_3:57392776-57392795 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_3:57392925-57392944 Msa1111650:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_3:57392955-57392974 Msa1111650:three_prime_UTR 35.0%
!!! AACCTAAATTTTGGCCTTAG+GGG - chr7_3:57391619-57391638 None:intergenic 35.0%
!! GATGGGAGAAGGTATTTATT+TGG + chr7_3:57391668-57391687 Msa1111650:exon 35.0%
ATAAGTTAAGGAGGACTACT+TGG + chr7_3:57391793-57391812 Msa1111650:CDS 35.0%
TAAGTTAAGGAGGACTACTT+GGG + chr7_3:57391794-57391813 Msa1111650:CDS 35.0%
CTCCAAGTTAGAATCAACTT+GGG - chr7_3:57391941-57391960 None:intergenic 35.0%
! ATAACTCGACTCGAATTAGT+TGG + chr7_3:57392182-57392201 Msa1111650:intron 35.0%
! TAACTCGACTCGAATTAGTT+GGG + chr7_3:57392183-57392202 Msa1111650:intron 35.0%
!! GTGTTATTTCGAAGTCACAT+CGG - chr7_3:57392210-57392229 None:intergenic 35.0%
!!! TTTCCTCATGATTTGGCTTT+TGG + chr7_3:57392279-57392298 Msa1111650:intron 35.0%
! GTTTTCACTGTTCCTTGAAT+TGG + chr7_3:57392311-57392330 Msa1111650:intron 35.0%
!! GAATTGGTTTGTTATGATGC+AGG + chr7_3:57392327-57392346 Msa1111650:intron 35.0%
ATGGTGAACCATACTTCAAA+AGG - chr7_3:57392534-57392553 None:intergenic 35.0%
TAGTTTCTTATGCAGCTCAA+TGG + chr7_3:57392570-57392589 Msa1111650:CDS 35.0%
!!! GCTTATGGAGATTTTTTGTC+TGG + chr7_3:57392631-57392650 Msa1111650:CDS 35.0%
!!! TATGGAGATTTTTTGTCTGG+GGG + chr7_3:57392634-57392653 Msa1111650:CDS 35.0%
! TTGCTATTCCTTTGATGCTT+TGG + chr7_3:57392722-57392741 Msa1111650:CDS 35.0%
CAAACAAACCAAAGCTATTG+AGG - chr7_3:57392776-57392795 None:intergenic 35.0%
AAGTGTTCCATGTGTGAATT+GGG + chr7_3:57392925-57392944 Msa1111650:three_prime_UTR 35.0%
! AGTATATTGGTGGTTGAAAG+TGG + chr7_3:57392955-57392974 Msa1111650:three_prime_UTR 35.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_3:57391615-57391634 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_3:57391614-57391633 Msa1111650:five_prime_UTR 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_3:57391650-57391669 Msa1111650:exon 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_3:57391651-57391670 Msa1111650:exon 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_3:57391697-57391716 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_3:57391765-57391784 Msa1111650:CDS 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_3:57391771-57391790 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_3:57391795-57391814 Msa1111650:CDS 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_3:57391812-57391831 Msa1111650:CDS 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_3:57391936-57391955 Msa1111650:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_3:57391942-57391961 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_3:57392160-57392179 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_3:57392161-57392180 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_3:57392342-57392361 Msa1111650:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_3:57392368-57392387 Msa1111650:CDS 40.0%
! TATAGTGGCTGTGAGTATTG+TGG - chr7_3:57392407-57392426 None:intergenic 40.0%
GGGTTACACACAAAGTGTAT+TGG + chr7_3:57392654-57392673 Msa1111650:CDS 40.0%
!! GGGTTTACCTTAGCTTTTGT+TGG + chr7_3:57392682-57392701 Msa1111650:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_3:57392729-57392748 Msa1111650:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_3:57392730-57392749 Msa1111650:CDS 40.0%
GAGGCTAAAAATACAAGCAC+TGG - chr7_3:57392757-57392776 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_3:57392924-57392943 Msa1111650:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_3:57392935-57392954 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_3:57392945-57392964 Msa1111650:three_prime_UTR 40.0%
!!! TAAATTTTGGCCTTAGGGGT+TGG - chr7_3:57391615-57391634 None:intergenic 40.0%
AACCCCTAAGGCCAAAATTT+AGG + chr7_3:57391614-57391633 Msa1111650:five_prime_UTR 40.0%
TGCTTCATCACTAAGGAAGA+TGG + chr7_3:57391650-57391669 Msa1111650:exon 40.0%
GCTTCATCACTAAGGAAGAT+GGG + chr7_3:57391651-57391670 Msa1111650:exon 40.0%
AAGGCTCAAAGGGACTAATA+TGG - chr7_3:57391697-57391716 None:intergenic 40.0%
AAACCTTCACGCACAACTTA+TGG + chr7_3:57391765-57391784 Msa1111650:CDS 40.0%
ATTCCATAAGTTGTGCGTGA+AGG - chr7_3:57391771-57391790 None:intergenic 40.0%
AAGTTAAGGAGGACTACTTG+GGG + chr7_3:57391795-57391814 Msa1111650:CDS 40.0%
TTGGGGTCTTAACGTAAATC+AGG + chr7_3:57391812-57391831 Msa1111650:CDS 40.0%
!! CTCCCAAGTTGATTCTAACT+TGG + chr7_3:57391936-57391955 Msa1111650:intron 40.0%
GCTCCAAGTTAGAATCAACT+TGG - chr7_3:57391942-57391961 None:intergenic 40.0%
AAAGGGAAAATCCACGTCAT+GGG - chr7_3:57392160-57392179 None:intergenic 40.0%
TAAAGGGAAAATCCACGTCA+TGG - chr7_3:57392161-57392180 None:intergenic 40.0%
GATGCAGGGTGATGATAAAA+AGG + chr7_3:57392342-57392361 Msa1111650:intron 40.0%
TGCTATGTGTACAAACCATG+AGG + chr7_3:57392368-57392387 Msa1111650:CDS 40.0%
! TATAGTGGCTGTGAGTATTG+TGG - chr7_3:57392407-57392426 None:intergenic 40.0%
GGGTTACACACAAAGTGTAT+TGG + chr7_3:57392654-57392673 Msa1111650:CDS 40.0%
!! GGGTTTACCTTAGCTTTTGT+TGG + chr7_3:57392682-57392701 Msa1111650:CDS 40.0%
! TCCTTTGATGCTTTGGATGT+TGG + chr7_3:57392729-57392748 Msa1111650:CDS 40.0%
! CCTTTGATGCTTTGGATGTT+GGG + chr7_3:57392730-57392749 Msa1111650:CDS 40.0%
GAGGCTAAAAATACAAGCAC+TGG - chr7_3:57392757-57392776 None:intergenic 40.0%
! GAAGTGTTCCATGTGTGAAT+TGG + chr7_3:57392924-57392943 Msa1111650:three_prime_UTR 40.0%
GTGTAATCCCAATTCACACA+TGG - chr7_3:57392935-57392954 None:intergenic 40.0%
GGGATTACACAGTATATTGG+TGG + chr7_3:57392945-57392964 Msa1111650:three_prime_UTR 40.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_3:57391657-57391676 Msa1111650:exon 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_3:57391737-57391756 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_3:57391757-57391776 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_3:57392285-57392304 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_3:57392386-57392405 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_3:57392478-57392497 Msa1111650:CDS 45.0%
TTATGCAGCTCAATGGCCAT+AGG + chr7_3:57392577-57392596 Msa1111650:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_3:57392733-57392752 None:intergenic 45.0%
TTATGTCCCCAAATTCCCAC+AGG + chr7_3:57392810-57392829 Msa1111650:CDS 45.0%
TATGTCCCCAAATTCCCACA+GGG + chr7_3:57392811-57392830 Msa1111650:CDS 45.0%
TTGTGACCCTGTGGGAATTT+GGG - chr7_3:57392820-57392839 None:intergenic 45.0%
TTTGTGACCCTGTGGGAATT+TGG - chr7_3:57392821-57392840 None:intergenic 45.0%
TACATCGTTTGTGACCCTGT+GGG - chr7_3:57392828-57392847 None:intergenic 45.0%
TCACTAAGGAAGATGGGAGA+AGG + chr7_3:57391657-57391676 Msa1111650:exon 45.0%
TGGTGTAGCAGAGAAAAGCA+TGG - chr7_3:57391737-57391756 None:intergenic 45.0%
! GCGTGAAGGTTTGTTCTTGA+TGG - chr7_3:57391757-57391776 None:intergenic 45.0%
GGTCCAAAAGCCAAATCATG+AGG - chr7_3:57392285-57392304 None:intergenic 45.0%
!! GGTCATAAGAGTGTTCCTCA+TGG - chr7_3:57392386-57392405 None:intergenic 45.0%
!! GCAAGCCATCTTTTTAGCAG+TGG + chr7_3:57392478-57392497 Msa1111650:CDS 45.0%
TTATGCAGCTCAATGGCCAT+AGG + chr7_3:57392577-57392596 Msa1111650:CDS 45.0%
! CCCAACATCCAAAGCATCAA+AGG - chr7_3:57392733-57392752 None:intergenic 45.0%
TTATGTCCCCAAATTCCCAC+AGG + chr7_3:57392810-57392829 Msa1111650:CDS 45.0%
TATGTCCCCAAATTCCCACA+GGG + chr7_3:57392811-57392830 Msa1111650:CDS 45.0%
TTGTGACCCTGTGGGAATTT+GGG - chr7_3:57392820-57392839 None:intergenic 45.0%
TTTGTGACCCTGTGGGAATT+TGG - chr7_3:57392821-57392840 None:intergenic 45.0%
TACATCGTTTGTGACCCTGT+GGG - chr7_3:57392828-57392847 None:intergenic 45.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_3:57391602-57391621 Msa1111650:five_prime_UTR 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_3:57391610-57391629 None:intergenic 50.0%
TGTGACCCTGTGGGAATTTG+GGG - chr7_3:57392819-57392838 None:intergenic 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_3:57392829-57392848 None:intergenic 50.0%
!! GGGGTTGGTTTGGTTGGTAA+TGG - chr7_3:57391600-57391619 None:intergenic 50.0%
ACCAACCAAACCAACCCCTA+AGG + chr7_3:57391602-57391621 Msa1111650:five_prime_UTR 50.0%
!! TTTGGCCTTAGGGGTTGGTT+TGG - chr7_3:57391610-57391629 None:intergenic 50.0%
TGTGACCCTGTGGGAATTTG+GGG - chr7_3:57392819-57392838 None:intergenic 50.0%
GTACATCGTTTGTGACCCTG+TGG - chr7_3:57392829-57392848 None:intergenic 50.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_3:57391606-57391625 None:intergenic 55.0%
GAAATCAGAGGCCCATGACG+TGG + chr7_3:57392146-57392165 Msa1111650:intron 55.0%
!! GCCTTAGGGGTTGGTTTGGT+TGG - chr7_3:57391606-57391625 None:intergenic 55.0%
GAAATCAGAGGCCCATGACG+TGG + chr7_3:57392146-57392165 Msa1111650:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57391600 57392986 57391600 ID=Msa1111650;Name=Msa1111650
chr7_3 mRNA 57391600 57392986 57391600 ID=Msa1111650-mRNA-1;Parent=Msa1111650;Name=Msa1111650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|2|125|225
chr7_3 exon 57391600 57391833 57391600 ID=Msa1111650-mRNA-1:exon:12363;Parent=Msa1111650-mRNA-1
chr7_3 exon 57392349 57392986 57392349 ID=Msa1111650-mRNA-1:exon:12364;Parent=Msa1111650-mRNA-1
chr7_3 five_prime_UTR 57391600 57391668 57391600 ID=Msa1111650-mRNA-1:five_prime_utr;Parent=Msa1111650-mRNA-1
chr7_3 CDS 57391669 57391833 57391669 ID=Msa1111650-mRNA-1:cds;Parent=Msa1111650-mRNA-1
chr7_3 CDS 57392349 57392861 57392349 ID=Msa1111650-mRNA-1:cds;Parent=Msa1111650-mRNA-1
chr7_3 three_prime_UTR 57392862 57392986 57392862 ID=Msa1111650-mRNA-1:three_prime_utr;Parent=Msa1111650-mRNA-1
Gene Sequence

>Msa1111650

ATGGGAGAAGGTATTTATTTGGATACCATATTAGTCCCTTTGAGCCTTTTCATTACAATAGTTTACCATGCTTTTCTCTGCTACACCATCAAGAACAAACCTTCACGCACAACTTATGGAATTGATAAGTTAAGGAGGACTACTTGGGGTCTTAACGTAAATCAGGGTGATGATAAAAAGGCTATGCTATGTGTACAAACCATGAGGAACACTCTTATGACCACAATACTCACAGCCACTATAACAATTCTTGTAAACATGGCTTTAGCAGCTCTAAACAATAATGCATTCAATGCAAGCCATCTTTTTAGCAGTGGATTTTTTGGTTCAAAATCAGATACAATCTTCCTTTTGAAGTATGGTTCACCATCAATTTGTTTGTTGATTAGTTTCTTATGCAGCTCAATGGCCATAGGATTTCTAATTGATGCAAATTTTTTGATGAATGCTTATGGAGATTTTTTGTCTGGGGGTTACACACAAAGTGTATTGGAAAAAGGGTTTACCTTAGCTTTTGTTGGTAATAGAGTGTTTTGTCTTGCTATTCCTTTGATGCTTTGGATGTTGGGTCCAGTGCTTGTATTTTTAGCCTCAATAGCTTTGGTTTGTTTGTTGCATGAGTTTGATTATGTCCCCAAATTCCCACAGGGTCACAAACGATGTACTAATGTAAAATAA

Protein sequence

>Msa1111650

MGEGIYLDTILVPLSLFITIVYHAFLCYTIKNKPSRTTYGIDKLRRTTWGLNVNQGDDKKAMLCVQTMRNTLMTTILTATITILVNMALAALNNNAFNASHLFSSGFFGSKSDTIFLLKYGSPSICLLISFLCSSMAIGFLIDANFLMNAYGDFLSGGYTQSVLEKGFTLAFVGNRVFCLAIPLMLWMLGPVLVFLASIALVCLLHEFDYVPKFPQGHKRCTNVK*