AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1265900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265900 MtrunA17_Chr4g0071301 91.768 328 18 4 1 320 7 333 0.0 520
Msa1265900 MtrunA17_Chr2g0299081 45.897 329 131 14 1 320 6 296 5.87e-47 160
Msa1265900 MtrunA17_Chr1g0151461 44.667 150 58 6 122 249 108 254 8.32e-26 104
Msa1265900 MtrunA17_Chr4g0068031 33.784 148 72 4 172 319 22 143 2.73e-17 77.4
Msa1265900 MtrunA17_Chr7g0271861 75.000 36 9 0 180 215 22 57 1.66e-14 69.3
Msa1265900 MtrunA17_Chr5g0404131 53.448 58 27 0 159 216 171 228 3.03e-14 72.0
Msa1265900 MtrunA17_Chr8g0373231 70.270 37 11 0 180 216 125 161 1.42e-12 66.2
Msa1265900 MtrunA17_Chr1g0213161 39.506 81 42 2 174 249 146 224 7.60e-12 64.3
Msa1265900 MtrunA17_Chr2g0326771 46.377 69 36 1 148 215 183 251 3.15e-11 63.2
Msa1265900 MtrunA17_Chr5g0404981 40.244 82 44 2 180 258 300 379 3.98e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265900 AT4G26150.1 42.105 247 117 6 91 320 115 352 1.66e-38 140
Msa1265900 AT5G56860.1 35.938 256 107 9 14 213 9 263 1.47e-22 97.4
Msa1265900 AT5G49300.1 36.424 151 57 4 169 319 27 138 7.04e-18 79.3
Msa1265900 AT5G26930.1 75.610 41 10 0 177 217 23 63 4.08e-17 76.6
Msa1265900 AT3G06740.1 37.778 135 51 5 182 316 43 144 1.59e-15 73.2
Msa1265900 AT4G36620.1 50.769 65 25 1 180 237 75 139 7.90e-15 72.8
Msa1265900 AT3G50870.1 63.265 49 17 1 180 227 152 200 3.53e-14 72.4
Msa1265900 AT3G16870.1 70.000 40 12 0 178 217 40 79 9.19e-14 69.3
Msa1265900 AT4G16141.1 67.500 40 13 0 178 217 35 74 1.76e-13 68.6
Msa1265900 AT2G18380.1 66.667 45 14 1 176 219 88 132 2.16e-13 68.6
Msa1265900 AT1G08010.2 39.773 88 50 2 172 259 212 296 5.97e-13 68.6
Msa1265900 AT1G08010.1 39.773 88 50 2 172 259 212 296 5.97e-13 68.6
Msa1265900 AT1G08010.3 39.773 88 50 2 172 259 212 296 5.97e-13 68.6
Msa1265900 AT1G08000.2 38.636 88 50 2 172 259 210 293 2.93e-12 66.6
Msa1265900 AT1G08000.1 38.636 88 50 2 172 259 210 293 2.93e-12 66.6

Find 87 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTCATTGGTTCAATTTA+AGG 0.134485 8_2:-70504254 Msa1265900:three_prime_UTR
GCAATAATTATTCAACTATT+AGG 0.137638 8_2:-70505013 Msa1265900:CDS
TGAACAATCAAACTCAATTT+TGG 0.139942 8_2:+70504472 None:intergenic
ATTAAGCTTGAGTGAGAATT+TGG 0.175716 8_2:-70504363 Msa1265900:CDS
CTTCTCATGGCGTTATCTTA+TGG 0.189112 8_2:-70504296 Msa1265900:CDS
TGAATTTGATTAATGGTTTA+TGG 0.211015 8_2:-70504154 Msa1265900:three_prime_UTR
ATTAGTTTGAATTTGATTAA+TGG 0.224358 8_2:-70504161 Msa1265900:three_prime_UTR
GAAAATGAAGAAGAAGAATT+TGG 0.264622 8_2:+70505578 None:intergenic
TCTATCTATCTATCTTAATT+AGG 0.276848 8_2:-70504190 Msa1265900:three_prime_UTR
GTTTATGGTGTACGAGAATA+AGG 0.285758 8_2:-70504139 Msa1265900:three_prime_UTR
GCTGCTGCAGCATCGGCAAT+TGG 0.307111 8_2:-70504563 Msa1265900:CDS
CAATAATTATTCAACTATTA+GGG 0.315780 8_2:-70505012 Msa1265900:CDS
GAAATGATGATTGGAAATTA+AGG 0.328216 8_2:-70504098 Msa1265900:three_prime_UTR
TAATCCTCTTTATATATTAG+TGG 0.329381 8_2:-70505802 Msa1265900:five_prime_UTR
CATGGTTGAGCTTAGTTCAT+TGG 0.347796 8_2:-70504266 Msa1265900:exon
TGATCTTGATTAAGATCAAT+AGG 0.353074 8_2:+70505620 None:intergenic
GGATTAAGAGAGGGAGAGAA+TGG 0.356145 8_2:+70505819 None:intergenic
TTGCAGCCTCTCTCTCATCC+TGG 0.357986 8_2:+70504321 None:intergenic
GTTAGTTATGAAATGATGAT+TGG 0.359941 8_2:-70504107 Msa1265900:three_prime_UTR
TGCAGCCTCTCTCTCATCCT+GGG 0.415909 8_2:+70504322 None:intergenic
ATGTATACCTTTGGGCCTCT+TGG 0.416802 8_2:+70504942 None:intergenic
CATGTGGTAAGTTGTTTGTT+TGG 0.417311 8_2:+70505486 None:intergenic
TTAAGCTTGAGTGAGAATTT+GGG 0.418107 8_2:-70504362 Msa1265900:CDS
AAGGAAGGCAAGACGTGCTT+TGG 0.419438 8_2:-70504588 Msa1265900:CDS
ACACCACTAAGACCCCTCTA+TGG 0.423028 8_2:-70504974 Msa1265900:CDS
CTTGATCTTGTGAGTCTAAG+AGG 0.434136 8_2:+70505531 None:intergenic
CCTCCATAGAGGGGTCTTAG+TGG 0.441426 8_2:+70504971 None:intergenic
CACTATATGACGAGTAGGCC+TGG 0.449445 8_2:-70505877 None:intergenic
ATAAGGTGGTGGTATCATAT+TGG 0.451686 8_2:+70505661 None:intergenic
GATGATGGTTTCTGATCAAA+CGG 0.456924 8_2:-70505126 Msa1265900:CDS
TTGTCCACTAATATATAAAG+AGG 0.459438 8_2:+70505798 None:intergenic
GATTAAGAGAGGGAGAGAAT+GGG 0.467292 8_2:+70505820 None:intergenic
TTGGTCCACTCCTCCATAGA+GGG 0.468086 8_2:+70504961 None:intergenic
AAAATCACACTACCTTCATC+TGG 0.475551 8_2:+70504036 None:intergenic
TTTGTTTGGCAGTAATAAGA+TGG 0.481929 8_2:+70505500 None:intergenic
AAGAAGAATTTGGACTAGAA+AGG 0.497380 8_2:+70505588 None:intergenic
TGAATCAGTGCAAGCAAAGT+AGG 0.497607 8_2:+70505728 None:intergenic
ATTTAAGGATATTGTTCACT+AGG 0.497726 8_2:-70504239 Msa1265900:three_prime_UTR
TTATCTTATGGATTAGTCCA+TGG 0.502722 8_2:-70504284 Msa1265900:CDS
ATATTCACTCAAGTGGATCA+TGG 0.512325 8_2:-70505316 Msa1265900:CDS
GAGAATAATGAAGAAGATGA+TGG 0.517661 8_2:-70505141 Msa1265900:CDS
TTTGGCTGCTGCTGCAGCAT+CGG 0.517772 8_2:-70504570 Msa1265900:CDS
CTTGGTCCACTCCTCCATAG+AGG 0.517925 8_2:+70504960 None:intergenic
TGATCTTAATTAGGTTGAGA+AGG 0.524769 8_2:-70505342 Msa1265900:intron
TATAGACACAAAATAATCAA+AGG 0.534947 8_2:+70505694 None:intergenic
TACTTTACCTCTTGATCATG+TGG 0.541831 8_2:+70505470 None:intergenic
AACACAAGCTGACAATTCGT+TGG 0.542076 8_2:-70505253 Msa1265900:CDS
AAGGTTAATATTCACTCAAG+TGG 0.542101 8_2:-70505323 Msa1265900:CDS
ATGATTGGAAATTAAGGTGA+AGG 0.542569 8_2:-70504092 Msa1265900:three_prime_UTR
GGTGGTATCATATTGGATGA+TGG 0.543870 8_2:+70505668 None:intergenic
TATATGCAACTGAAATGAAA+CGG 0.545478 8_2:+70505755 None:intergenic
TATATAAAGAGGATTAAGAG+AGG 0.556090 8_2:+70505809 None:intergenic
CAGTCACTTTGCAACGCATG+TGG 0.556816 8_2:-70504620 Msa1265900:CDS
AATTTGGACTAGAAAGGTCA+TGG 0.556899 8_2:+70505594 None:intergenic
CAACTTACCACATGATCAAG+AGG 0.559110 8_2:-70505477 Msa1265900:intron
ATAGACACAAAATAATCAAA+GGG 0.563453 8_2:+70505695 None:intergenic
GCAGCCTCTCTCTCATCCTG+GGG 0.567150 8_2:+70504323 None:intergenic
TGTGGCAACATGTCTACTCC+AGG 0.569731 8_2:+70505859 None:intergenic
ATATAAAGAGGATTAAGAGA+GGG 0.569780 8_2:+70505810 None:intergenic
AGAGGCTGCAATCCTTCTCA+TGG 0.574547 8_2:-70504309 Msa1265900:CDS
ATGATGGTTTCTGATCAAAC+GGG 0.587005 8_2:-70505125 Msa1265900:CDS
TAAGAAATAGATGAACGAGA+TGG 0.587918 8_2:+70503914 None:intergenic
GCATCGTTGTAACCAGATGA+AGG 0.588439 8_2:-70504048 Msa1265900:three_prime_UTR
GGATCATCACAAGATATATG+TGG 0.588754 8_2:+70505841 None:intergenic
ATGTGGGATTAGACAAAGGA+AGG 0.591436 8_2:-70504603 Msa1265900:CDS
CTGCTATTATCTGTTCCTTG+TGG 0.602551 8_2:+70505038 None:intergenic
TGATCATGAGGATGGTACTT+CGG 0.612710 8_2:-70505186 Msa1265900:CDS
CAAGAAGCTGATCATGAGGA+TGG 0.614482 8_2:-70505194 Msa1265900:CDS
AGGATGGTACTTCGGTGAAG+TGG 0.614786 8_2:-70505178 Msa1265900:CDS
TTGATCTTGTGAGTCTAAGA+GGG 0.615407 8_2:+70505532 None:intergenic
CATAAGATAACGCCATGAGA+AGG 0.615895 8_2:+70504297 None:intergenic
TAATCAAGAAGCTGATCATG+AGG 0.617008 8_2:-70505198 Msa1265900:CDS
GAGTGGACCAAGAGGCCCAA+AGG 0.618470 8_2:-70504949 Msa1265900:intron
CAATGAACTAAGCTCAACCA+TGG 0.619076 8_2:+70504267 None:intergenic
TCTGTTCCTTGTGGTGACAG+TGG 0.621928 8_2:+70505047 None:intergenic
ATGACGGACGAAGATAGATA+AGG 0.632473 8_2:+70505644 None:intergenic
ATTAAGATCAATAGGCATGA+CGG 0.633382 8_2:+70505628 None:intergenic
TGGTCCACTCCTCCATAGAG+GGG 0.635988 8_2:+70504962 None:intergenic
AAGACCCCTCTATGGAGGAG+TGG 0.638844 8_2:-70504966 Msa1265900:CDS
GACGAAGATAGATAAGGTGG+TGG 0.639273 8_2:+70505650 None:intergenic
CCACTAAGACCCCTCTATGG+AGG 0.641407 8_2:-70504971 Msa1265900:CDS
AGTCACTTTGCAACGCATGT+GGG 0.651862 8_2:-70504619 Msa1265900:CDS
AAGCAACCACTGTCACCACA+AGG 0.654177 8_2:-70505053 Msa1265900:CDS
ACGGACGAAGATAGATAAGG+TGG 0.673417 8_2:+70505647 None:intergenic
ACGCATGTGGGATTAGACAA+AGG 0.678808 8_2:-70504607 Msa1265900:CDS
CAGCCTCTCTCTCATCCTGG+GGG 0.685188 8_2:+70504324 None:intergenic
CTATGGAGGAGTGGACCAAG+AGG 0.688009 8_2:-70504957 Msa1265900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAATTAATAAAGTAT+AGG - chr8_2:70504844-70504863 Msa1265900:intron 10.0%
!! AAATCAAATTAATAAAGTAT+AGG - chr8_2:70504844-70504863 Msa1265900:intron 10.0%
!! ACATCATCAAATTAATTAAA+GGG + chr8_2:70504374-70504393 None:intergenic 15.0%
!! CAATAATTATTCAACTATTA+GGG - chr8_2:70504723-70504742 Msa1265900:intron 15.0%
!! AAATTAATAAAGTATAGGTT+TGG - chr8_2:70504849-70504868 Msa1265900:intron 15.0%
!! AAAATGTTTATTTATTTGTC+AGG - chr8_2:70504984-70505003 Msa1265900:CDS 15.0%
!!! ATTAGTTTGAATTTGATTAA+TGG - chr8_2:70505574-70505593 Msa1265900:CDS 15.0%
!!! TTATTTTCTTTTATAATAGG+TGG - chr8_2:70505723-70505742 Msa1265900:five_prime_UTR 15.0%
!!! TATTTTCTTTTATAATAGGT+GGG - chr8_2:70505724-70505743 Msa1265900:five_prime_UTR 15.0%
!! TATTTGAAAAAAAAATCTCA+AGG - chr8_2:70505845-70505864 Msa1265900:five_prime_UTR 15.0%
!! ACATCATCAAATTAATTAAA+GGG + chr8_2:70504374-70504393 None:intergenic 15.0%
!! CAATAATTATTCAACTATTA+GGG - chr8_2:70504723-70504742 Msa1265900:intron 15.0%
!! AAATTAATAAAGTATAGGTT+TGG - chr8_2:70504849-70504868 Msa1265900:intron 15.0%
!! AAAATGTTTATTTATTTGTC+AGG - chr8_2:70504984-70505003 Msa1265900:CDS 15.0%
!!! ATTAGTTTGAATTTGATTAA+TGG - chr8_2:70505574-70505593 Msa1265900:CDS 15.0%
!!! TTATTTTCTTTTATAATAGG+TGG - chr8_2:70505723-70505742 Msa1265900:five_prime_UTR 15.0%
!!! TATTTTCTTTTATAATAGGT+GGG - chr8_2:70505724-70505743 Msa1265900:five_prime_UTR 15.0%
!! TATTTGAAAAAAAAATCTCA+AGG - chr8_2:70505845-70505864 Msa1265900:five_prime_UTR 15.0%
!! TAATCCTCTTTATATATTAG+TGG - chr8_2:70503933-70503952 Msa1265900:three_prime_UTR 20.0%
!! ATAGACACAAAATAATCAAA+GGG + chr8_2:70504043-70504062 None:intergenic 20.0%
!! TATAGACACAAAATAATCAA+AGG + chr8_2:70504044-70504063 None:intergenic 20.0%
!! CATCATCAAATTAATTAAAG+GGG + chr8_2:70504373-70504392 None:intergenic 20.0%
!! CACATCATCAAATTAATTAA+AGG + chr8_2:70504375-70504394 None:intergenic 20.0%
!! GCAATAATTATTCAACTATT+AGG - chr8_2:70504722-70504741 Msa1265900:intron 20.0%
!! TCATATATATGTATACCTTT+GGG + chr8_2:70504804-70504823 None:intergenic 20.0%
!! ATCATATATATGTATACCTT+TGG + chr8_2:70504805-70504824 None:intergenic 20.0%
!!! ATTTGATTTTTTATAAAGGG+TGG + chr8_2:70504833-70504852 None:intergenic 20.0%
!! GTTGAATTGAATCTTTAATT+TGG + chr8_2:70504891-70504910 None:intergenic 20.0%
!!! AATACAAAGTGATTGTTTTA+GGG + chr8_2:70504913-70504932 None:intergenic 20.0%
!!! TAATACAAAGTGATTGTTTT+AGG + chr8_2:70504914-70504933 None:intergenic 20.0%
!! TTATAATTACGAATCAAACT+CGG - chr8_2:70504939-70504958 Msa1265900:intron 20.0%
!!! TTTAGAACGTTGTAAATTTA+GGG + chr8_2:70504967-70504986 None:intergenic 20.0%
!!! TTTTAGAACGTTGTAAATTT+AGG + chr8_2:70504968-70504987 None:intergenic 20.0%
!!! TATTTTGCTAATAACTTTGA+TGG - chr8_2:70505082-70505101 Msa1265900:CDS 20.0%
!! TCTATCTATCTATCTTAATT+AGG - chr8_2:70505545-70505564 Msa1265900:CDS 20.0%
!! TGAATTTGATTAATGGTTTA+TGG - chr8_2:70505581-70505600 Msa1265900:CDS 20.0%
!! TAATCCTCTTTATATATTAG+TGG - chr8_2:70503933-70503952 Msa1265900:three_prime_UTR 20.0%
!! ATAGACACAAAATAATCAAA+GGG + chr8_2:70504043-70504062 None:intergenic 20.0%
!! TATAGACACAAAATAATCAA+AGG + chr8_2:70504044-70504063 None:intergenic 20.0%
!! CATCATCAAATTAATTAAAG+GGG + chr8_2:70504373-70504392 None:intergenic 20.0%
!! CACATCATCAAATTAATTAA+AGG + chr8_2:70504375-70504394 None:intergenic 20.0%
!! GCAATAATTATTCAACTATT+AGG - chr8_2:70504722-70504741 Msa1265900:intron 20.0%
!! TCATATATATGTATACCTTT+GGG + chr8_2:70504804-70504823 None:intergenic 20.0%
!! ATCATATATATGTATACCTT+TGG + chr8_2:70504805-70504824 None:intergenic 20.0%
!!! ATTTGATTTTTTATAAAGGG+TGG + chr8_2:70504833-70504852 None:intergenic 20.0%
!! GTTGAATTGAATCTTTAATT+TGG + chr8_2:70504891-70504910 None:intergenic 20.0%
!!! AATACAAAGTGATTGTTTTA+GGG + chr8_2:70504913-70504932 None:intergenic 20.0%
!!! TAATACAAAGTGATTGTTTT+AGG + chr8_2:70504914-70504933 None:intergenic 20.0%
!! TTATAATTACGAATCAAACT+CGG - chr8_2:70504939-70504958 Msa1265900:intron 20.0%
!!! TTTAGAACGTTGTAAATTTA+GGG + chr8_2:70504967-70504986 None:intergenic 20.0%
!!! TTTTAGAACGTTGTAAATTT+AGG + chr8_2:70504968-70504987 None:intergenic 20.0%
!!! TATTTTGCTAATAACTTTGA+TGG - chr8_2:70505082-70505101 Msa1265900:CDS 20.0%
!! TCTATCTATCTATCTTAATT+AGG - chr8_2:70505545-70505564 Msa1265900:CDS 20.0%
!! TGAATTTGATTAATGGTTTA+TGG - chr8_2:70505581-70505600 Msa1265900:CDS 20.0%
! ATATAAAGAGGATTAAGAGA+GGG + chr8_2:70503928-70503947 None:intergenic 25.0%
! TATATAAAGAGGATTAAGAG+AGG + chr8_2:70503929-70503948 None:intergenic 25.0%
! TTGTCCACTAATATATAAAG+AGG + chr8_2:70503940-70503959 None:intergenic 25.0%
! TATATGCAACTGAAATGAAA+CGG + chr8_2:70503983-70504002 None:intergenic 25.0%
! TGATCTTGATTAAGATCAAT+AGG + chr8_2:70504118-70504137 None:intergenic 25.0%
! GAAAATGAAGAAGAAGAATT+TGG + chr8_2:70504160-70504179 None:intergenic 25.0%
! AATTAATTAAAGGGGATCAA+AGG + chr8_2:70504365-70504384 None:intergenic 25.0%
!!! TTGATGATGTGATCTTAATT+AGG - chr8_2:70504384-70504403 Msa1265900:CDS 25.0%
!!! GAATTGAATCTTTAATTTGG+AGG + chr8_2:70504888-70504907 None:intergenic 25.0%
!!! TATTAGTATTAGTGCTACTT+AGG - chr8_2:70505028-70505047 Msa1265900:CDS 25.0%
!! TGAACAATCAAACTCAATTT+TGG + chr8_2:70505266-70505285 None:intergenic 25.0%
!!! AAAAGAGTTTATCACTTTTG+AGG - chr8_2:70505342-70505361 Msa1265900:intron 25.0%
!!! TAGTTCATTGGTTCAATTTA+AGG - chr8_2:70505481-70505500 Msa1265900:CDS 25.0%
! ATTTAAGGATATTGTTCACT+AGG - chr8_2:70505496-70505515 Msa1265900:CDS 25.0%
! GTTAGTTATGAAATGATGAT+TGG - chr8_2:70505628-70505647 Msa1265900:CDS 25.0%
! GAAATGATGATTGGAAATTA+AGG - chr8_2:70505637-70505656 Msa1265900:CDS 25.0%
! ATATAAAGAGGATTAAGAGA+GGG + chr8_2:70503928-70503947 None:intergenic 25.0%
! TATATAAAGAGGATTAAGAG+AGG + chr8_2:70503929-70503948 None:intergenic 25.0%
! TTGTCCACTAATATATAAAG+AGG + chr8_2:70503940-70503959 None:intergenic 25.0%
! TATATGCAACTGAAATGAAA+CGG + chr8_2:70503983-70504002 None:intergenic 25.0%
! TGATCTTGATTAAGATCAAT+AGG + chr8_2:70504118-70504137 None:intergenic 25.0%
! GAAAATGAAGAAGAAGAATT+TGG + chr8_2:70504160-70504179 None:intergenic 25.0%
! AATTAATTAAAGGGGATCAA+AGG + chr8_2:70504365-70504384 None:intergenic 25.0%
!!! TTGATGATGTGATCTTAATT+AGG - chr8_2:70504384-70504403 Msa1265900:CDS 25.0%
!!! GAATTGAATCTTTAATTTGG+AGG + chr8_2:70504888-70504907 None:intergenic 25.0%
!!! TATTAGTATTAGTGCTACTT+AGG - chr8_2:70505028-70505047 Msa1265900:CDS 25.0%
!! TGAACAATCAAACTCAATTT+TGG + chr8_2:70505266-70505285 None:intergenic 25.0%
!!! AAAAGAGTTTATCACTTTTG+AGG - chr8_2:70505342-70505361 Msa1265900:intron 25.0%
!!! TAGTTCATTGGTTCAATTTA+AGG - chr8_2:70505481-70505500 Msa1265900:CDS 25.0%
! ATTTAAGGATATTGTTCACT+AGG - chr8_2:70505496-70505515 Msa1265900:CDS 25.0%
! GTTAGTTATGAAATGATGAT+TGG - chr8_2:70505628-70505647 Msa1265900:CDS 25.0%
! GAAATGATGATTGGAAATTA+AGG - chr8_2:70505637-70505656 Msa1265900:CDS 25.0%
ATTAAGATCAATAGGCATGA+CGG + chr8_2:70504110-70504129 None:intergenic 30.0%
! AAGAAGAATTTGGACTAGAA+AGG + chr8_2:70504150-70504169 None:intergenic 30.0%
TTTGTTTGGCAGTAATAAGA+TGG + chr8_2:70504238-70504257 None:intergenic 30.0%
!! TGATCTTAATTAGGTTGAGA+AGG - chr8_2:70504393-70504412 Msa1265900:CDS 30.0%
AAGGTTAATATTCACTCAAG+TGG - chr8_2:70504412-70504431 Msa1265900:CDS 30.0%
!!! GTTTAGTCTTGTAGTTTTCA+TGG + chr8_2:70504465-70504484 None:intergenic 30.0%
GAGAATAATGAAGAAGATGA+TGG - chr8_2:70504594-70504613 Msa1265900:CDS 30.0%
!! CTTTAATTTGGAGGTTTCTA+GGG + chr8_2:70504879-70504898 None:intergenic 30.0%
!! TCTTTAATTTGGAGGTTTCT+AGG + chr8_2:70504880-70504899 None:intergenic 30.0%
!!! TCTTTTCTAGTTTGATGAGA+TGG + chr8_2:70505328-70505347 None:intergenic 30.0%
ATTAAGCTTGAGTGAGAATT+TGG - chr8_2:70505372-70505391 Msa1265900:intron 30.0%
TTAAGCTTGAGTGAGAATTT+GGG - chr8_2:70505373-70505392 Msa1265900:intron 30.0%
!! TTATCTTATGGATTAGTCCA+TGG - chr8_2:70505451-70505470 Msa1265900:intron 30.0%
ATGATTGGAAATTAAGGTGA+AGG - chr8_2:70505643-70505662 Msa1265900:CDS 30.0%
ATTAAGGTGAAGGACAAAAA+AGG - chr8_2:70505653-70505672 Msa1265900:CDS 30.0%
TAAGAAATAGATGAACGAGA+TGG + chr8_2:70505824-70505843 None:intergenic 30.0%
ATTAAGATCAATAGGCATGA+CGG + chr8_2:70504110-70504129 None:intergenic 30.0%
! AAGAAGAATTTGGACTAGAA+AGG + chr8_2:70504150-70504169 None:intergenic 30.0%
TTTGTTTGGCAGTAATAAGA+TGG + chr8_2:70504238-70504257 None:intergenic 30.0%
!! TGATCTTAATTAGGTTGAGA+AGG - chr8_2:70504393-70504412 Msa1265900:CDS 30.0%
AAGGTTAATATTCACTCAAG+TGG - chr8_2:70504412-70504431 Msa1265900:CDS 30.0%
!!! GTTTAGTCTTGTAGTTTTCA+TGG + chr8_2:70504465-70504484 None:intergenic 30.0%
GAGAATAATGAAGAAGATGA+TGG - chr8_2:70504594-70504613 Msa1265900:CDS 30.0%
!! CTTTAATTTGGAGGTTTCTA+GGG + chr8_2:70504879-70504898 None:intergenic 30.0%
!! TCTTTAATTTGGAGGTTTCT+AGG + chr8_2:70504880-70504899 None:intergenic 30.0%
!!! TCTTTTCTAGTTTGATGAGA+TGG + chr8_2:70505328-70505347 None:intergenic 30.0%
ATTAAGCTTGAGTGAGAATT+TGG - chr8_2:70505372-70505391 Msa1265900:intron 30.0%
TTAAGCTTGAGTGAGAATTT+GGG - chr8_2:70505373-70505392 Msa1265900:intron 30.0%
!! TTATCTTATGGATTAGTCCA+TGG - chr8_2:70505451-70505470 Msa1265900:intron 30.0%
ATGATTGGAAATTAAGGTGA+AGG - chr8_2:70505643-70505662 Msa1265900:CDS 30.0%
ATTAAGGTGAAGGACAAAAA+AGG - chr8_2:70505653-70505672 Msa1265900:CDS 30.0%
TAAGAAATAGATGAACGAGA+TGG + chr8_2:70505824-70505843 None:intergenic 30.0%
GGATCATCACAAGATATATG+TGG + chr8_2:70503897-70503916 None:intergenic 35.0%
! ATAAGGTGGTGGTATCATAT+TGG + chr8_2:70504077-70504096 None:intergenic 35.0%
! AATTTGGACTAGAAAGGTCA+TGG + chr8_2:70504144-70504163 None:intergenic 35.0%
TTGATCTTGTGAGTCTAAGA+GGG + chr8_2:70504206-70504225 None:intergenic 35.0%
CATGTGGTAAGTTGTTTGTT+TGG + chr8_2:70504252-70504271 None:intergenic 35.0%
TACTTTACCTCTTGATCATG+TGG + chr8_2:70504268-70504287 None:intergenic 35.0%
TAATTAAAGGGGATCAAAGG+TGG + chr8_2:70504362-70504381 None:intergenic 35.0%
ATATTCACTCAAGTGGATCA+TGG - chr8_2:70504419-70504438 Msa1265900:CDS 35.0%
TAATCAAGAAGCTGATCATG+AGG - chr8_2:70504537-70504556 Msa1265900:CDS 35.0%
! GATGATGGTTTCTGATCAAA+CGG - chr8_2:70504609-70504628 Msa1265900:CDS 35.0%
ATGATGGTTTCTGATCAAAC+GGG - chr8_2:70504610-70504629 Msa1265900:CDS 35.0%
GTTTATGGTGTACGAGAATA+AGG - chr8_2:70505596-70505615 Msa1265900:CDS 35.0%
AAAATCACACTACCTTCATC+TGG + chr8_2:70505702-70505721 None:intergenic 35.0%
GGATCATCACAAGATATATG+TGG + chr8_2:70503897-70503916 None:intergenic 35.0%
! ATAAGGTGGTGGTATCATAT+TGG + chr8_2:70504077-70504096 None:intergenic 35.0%
! AATTTGGACTAGAAAGGTCA+TGG + chr8_2:70504144-70504163 None:intergenic 35.0%
TTGATCTTGTGAGTCTAAGA+GGG + chr8_2:70504206-70504225 None:intergenic 35.0%
CATGTGGTAAGTTGTTTGTT+TGG + chr8_2:70504252-70504271 None:intergenic 35.0%
TACTTTACCTCTTGATCATG+TGG + chr8_2:70504268-70504287 None:intergenic 35.0%
TAATTAAAGGGGATCAAAGG+TGG + chr8_2:70504362-70504381 None:intergenic 35.0%
ATATTCACTCAAGTGGATCA+TGG - chr8_2:70504419-70504438 Msa1265900:CDS 35.0%
TAATCAAGAAGCTGATCATG+AGG - chr8_2:70504537-70504556 Msa1265900:CDS 35.0%
! GATGATGGTTTCTGATCAAA+CGG - chr8_2:70504609-70504628 Msa1265900:CDS 35.0%
ATGATGGTTTCTGATCAAAC+GGG - chr8_2:70504610-70504629 Msa1265900:CDS 35.0%
GTTTATGGTGTACGAGAATA+AGG - chr8_2:70505596-70505615 Msa1265900:CDS 35.0%
AAAATCACACTACCTTCATC+TGG + chr8_2:70505702-70505721 None:intergenic 35.0%
GATTAAGAGAGGGAGAGAAT+GGG + chr8_2:70503918-70503937 None:intergenic 40.0%
TGAATCAGTGCAAGCAAAGT+AGG + chr8_2:70504010-70504029 None:intergenic 40.0%
GGTGGTATCATATTGGATGA+TGG + chr8_2:70504070-70504089 None:intergenic 40.0%
!! ATGACGGACGAAGATAGATA+AGG + chr8_2:70504094-70504113 None:intergenic 40.0%
CTTGATCTTGTGAGTCTAAG+AGG + chr8_2:70504207-70504226 None:intergenic 40.0%
CAACTTACCACATGATCAAG+AGG - chr8_2:70504258-70504277 Msa1265900:three_prime_UTR 40.0%
AACACAAGCTGACAATTCGT+TGG - chr8_2:70504482-70504501 Msa1265900:CDS 40.0%
TGATCATGAGGATGGTACTT+CGG - chr8_2:70504549-70504568 Msa1265900:CDS 40.0%
CTGCTATTATCTGTTCCTTG+TGG + chr8_2:70504700-70504719 None:intergenic 40.0%
ATGTGGGATTAGACAAAGGA+AGG - chr8_2:70505132-70505151 Msa1265900:CDS 40.0%
CATAAGATAACGCCATGAGA+AGG + chr8_2:70505441-70505460 None:intergenic 40.0%
CTTCTCATGGCGTTATCTTA+TGG - chr8_2:70505439-70505458 Msa1265900:intron 40.0%
CAATGAACTAAGCTCAACCA+TGG + chr8_2:70505471-70505490 None:intergenic 40.0%
CATGGTTGAGCTTAGTTCAT+TGG - chr8_2:70505469-70505488 Msa1265900:intron 40.0%
GATTAAGAGAGGGAGAGAAT+GGG + chr8_2:70503918-70503937 None:intergenic 40.0%
TGAATCAGTGCAAGCAAAGT+AGG + chr8_2:70504010-70504029 None:intergenic 40.0%
GGTGGTATCATATTGGATGA+TGG + chr8_2:70504070-70504089 None:intergenic 40.0%
!! ATGACGGACGAAGATAGATA+AGG + chr8_2:70504094-70504113 None:intergenic 40.0%
CTTGATCTTGTGAGTCTAAG+AGG + chr8_2:70504207-70504226 None:intergenic 40.0%
CAACTTACCACATGATCAAG+AGG - chr8_2:70504258-70504277 Msa1265900:three_prime_UTR 40.0%
AACACAAGCTGACAATTCGT+TGG - chr8_2:70504482-70504501 Msa1265900:CDS 40.0%
TGATCATGAGGATGGTACTT+CGG - chr8_2:70504549-70504568 Msa1265900:CDS 40.0%
CTGCTATTATCTGTTCCTTG+TGG + chr8_2:70504700-70504719 None:intergenic 40.0%
ATGTGGGATTAGACAAAGGA+AGG - chr8_2:70505132-70505151 Msa1265900:CDS 40.0%
CATAAGATAACGCCATGAGA+AGG + chr8_2:70505441-70505460 None:intergenic 40.0%
CTTCTCATGGCGTTATCTTA+TGG - chr8_2:70505439-70505458 Msa1265900:intron 40.0%
CAATGAACTAAGCTCAACCA+TGG + chr8_2:70505471-70505490 None:intergenic 40.0%
CATGGTTGAGCTTAGTTCAT+TGG - chr8_2:70505469-70505488 Msa1265900:intron 40.0%
GGATTAAGAGAGGGAGAGAA+TGG + chr8_2:70503919-70503938 None:intergenic 45.0%
GACGAAGATAGATAAGGTGG+TGG + chr8_2:70504088-70504107 None:intergenic 45.0%
ACGGACGAAGATAGATAAGG+TGG + chr8_2:70504091-70504110 None:intergenic 45.0%
CAAGAAGCTGATCATGAGGA+TGG - chr8_2:70504541-70504560 Msa1265900:CDS 45.0%
ATGTATACCTTTGGGCCTCT+TGG + chr8_2:70504796-70504815 None:intergenic 45.0%
! AGTCACTTTGCAACGCATGT+GGG - chr8_2:70505116-70505135 Msa1265900:CDS 45.0%
ACGCATGTGGGATTAGACAA+AGG - chr8_2:70505128-70505147 Msa1265900:CDS 45.0%
! TGTTCAACAAGTTTTCCCCC+AGG - chr8_2:70505396-70505415 Msa1265900:intron 45.0%
GCATCGTTGTAACCAGATGA+AGG - chr8_2:70505687-70505706 Msa1265900:five_prime_UTR 45.0%
GGATTAAGAGAGGGAGAGAA+TGG + chr8_2:70503919-70503938 None:intergenic 45.0%
GACGAAGATAGATAAGGTGG+TGG + chr8_2:70504088-70504107 None:intergenic 45.0%
ACGGACGAAGATAGATAAGG+TGG + chr8_2:70504091-70504110 None:intergenic 45.0%
CAAGAAGCTGATCATGAGGA+TGG - chr8_2:70504541-70504560 Msa1265900:CDS 45.0%
ATGTATACCTTTGGGCCTCT+TGG + chr8_2:70504796-70504815 None:intergenic 45.0%
! AGTCACTTTGCAACGCATGT+GGG - chr8_2:70505116-70505135 Msa1265900:CDS 45.0%
ACGCATGTGGGATTAGACAA+AGG - chr8_2:70505128-70505147 Msa1265900:CDS 45.0%
! TGTTCAACAAGTTTTCCCCC+AGG - chr8_2:70505396-70505415 Msa1265900:intron 45.0%
GCATCGTTGTAACCAGATGA+AGG - chr8_2:70505687-70505706 Msa1265900:five_prime_UTR 45.0%
!!! TTAATTTGATTTTTTATAAA+GGG + chr8_2:70504836-70504855 None:intergenic 5.0%
!!! ATTAATTTGATTTTTTATAA+AGG + chr8_2:70504837-70504856 None:intergenic 5.0%
!!! TTTTTATTTTCTTTTATAAT+AGG - chr8_2:70505720-70505739 Msa1265900:five_prime_UTR 5.0%
!!! TTAATTTGATTTTTTATAAA+GGG + chr8_2:70504836-70504855 None:intergenic 5.0%
!!! ATTAATTTGATTTTTTATAA+AGG + chr8_2:70504837-70504856 None:intergenic 5.0%
!!! TTTTTATTTTCTTTTATAAT+AGG - chr8_2:70505720-70505739 Msa1265900:five_prime_UTR 5.0%
TGTGGCAACATGTCTACTCC+AGG + chr8_2:70503879-70503898 None:intergenic 50.0%
AGGATGGTACTTCGGTGAAG+TGG - chr8_2:70504557-70504576 Msa1265900:CDS 50.0%
AAGCAACCACTGTCACCACA+AGG - chr8_2:70504682-70504701 Msa1265900:intron 50.0%
TCTGTTCCTTGTGGTGACAG+TGG + chr8_2:70504691-70504710 None:intergenic 50.0%
ACACCACTAAGACCCCTCTA+TGG - chr8_2:70504761-70504780 Msa1265900:intron 50.0%
TTGGTCCACTCCTCCATAGA+GGG + chr8_2:70504777-70504796 None:intergenic 50.0%
! CAGTCACTTTGCAACGCATG+TGG - chr8_2:70505115-70505134 Msa1265900:CDS 50.0%
AAGGAAGGCAAGACGTGCTT+TGG - chr8_2:70505147-70505166 Msa1265900:CDS 50.0%
AGAGGCTGCAATCCTTCTCA+TGG - chr8_2:70505426-70505445 Msa1265900:intron 50.0%
TGTGGCAACATGTCTACTCC+AGG + chr8_2:70503879-70503898 None:intergenic 50.0%
AGGATGGTACTTCGGTGAAG+TGG - chr8_2:70504557-70504576 Msa1265900:CDS 50.0%
AAGCAACCACTGTCACCACA+AGG - chr8_2:70504682-70504701 Msa1265900:intron 50.0%
TCTGTTCCTTGTGGTGACAG+TGG + chr8_2:70504691-70504710 None:intergenic 50.0%
ACACCACTAAGACCCCTCTA+TGG - chr8_2:70504761-70504780 Msa1265900:intron 50.0%
TTGGTCCACTCCTCCATAGA+GGG + chr8_2:70504777-70504796 None:intergenic 50.0%
! CAGTCACTTTGCAACGCATG+TGG - chr8_2:70505115-70505134 Msa1265900:CDS 50.0%
AAGGAAGGCAAGACGTGCTT+TGG - chr8_2:70505147-70505166 Msa1265900:CDS 50.0%
AGAGGCTGCAATCCTTCTCA+TGG - chr8_2:70505426-70505445 Msa1265900:intron 50.0%
CCTCCATAGAGGGGTCTTAG+TGG + chr8_2:70504767-70504786 None:intergenic 55.0%
CCACTAAGACCCCTCTATGG+AGG - chr8_2:70504764-70504783 Msa1265900:intron 55.0%
AAGACCCCTCTATGGAGGAG+TGG - chr8_2:70504769-70504788 Msa1265900:intron 55.0%
TGGTCCACTCCTCCATAGAG+GGG + chr8_2:70504776-70504795 None:intergenic 55.0%
CTTGGTCCACTCCTCCATAG+AGG + chr8_2:70504778-70504797 None:intergenic 55.0%
CTATGGAGGAGTGGACCAAG+AGG - chr8_2:70504778-70504797 Msa1265900:intron 55.0%
TTTGGCTGCTGCTGCAGCAT+CGG - chr8_2:70505165-70505184 Msa1265900:CDS 55.0%
TTTCCCCCAGGATGAGAGAG+AGG - chr8_2:70505408-70505427 Msa1265900:intron 55.0%
TGCAGCCTCTCTCTCATCCT+GGG + chr8_2:70505416-70505435 None:intergenic 55.0%
TTGCAGCCTCTCTCTCATCC+TGG + chr8_2:70505417-70505436 None:intergenic 55.0%
TGTCTACTCCAGGCCTACTC+TGG + chr8_2:70503869-70503888 None:intergenic 55.0%
CCTCCATAGAGGGGTCTTAG+TGG + chr8_2:70504767-70504786 None:intergenic 55.0%
CCACTAAGACCCCTCTATGG+AGG - chr8_2:70504764-70504783 Msa1265900:intron 55.0%
AAGACCCCTCTATGGAGGAG+TGG - chr8_2:70504769-70504788 Msa1265900:intron 55.0%
TGGTCCACTCCTCCATAGAG+GGG + chr8_2:70504776-70504795 None:intergenic 55.0%
CTTGGTCCACTCCTCCATAG+AGG + chr8_2:70504778-70504797 None:intergenic 55.0%
CTATGGAGGAGTGGACCAAG+AGG - chr8_2:70504778-70504797 Msa1265900:intron 55.0%
TTTGGCTGCTGCTGCAGCAT+CGG - chr8_2:70505165-70505184 Msa1265900:CDS 55.0%
TTTCCCCCAGGATGAGAGAG+AGG - chr8_2:70505408-70505427 Msa1265900:intron 55.0%
TGCAGCCTCTCTCTCATCCT+GGG + chr8_2:70505416-70505435 None:intergenic 55.0%
TTGCAGCCTCTCTCTCATCC+TGG + chr8_2:70505417-70505436 None:intergenic 55.0%
GAGTGGACCAAGAGGCCCAA+AGG - chr8_2:70504786-70504805 Msa1265900:intron 60.0%
!! GCTGCTGCAGCATCGGCAAT+TGG - chr8_2:70505172-70505191 Msa1265900:CDS 60.0%
CAGCCTCTCTCTCATCCTGG+GGG + chr8_2:70505414-70505433 None:intergenic 60.0%
GCAGCCTCTCTCTCATCCTG+GGG + chr8_2:70505415-70505434 None:intergenic 60.0%
GAGTGGACCAAGAGGCCCAA+AGG - chr8_2:70504786-70504805 Msa1265900:intron 60.0%
!! GCTGCTGCAGCATCGGCAAT+TGG - chr8_2:70505172-70505191 Msa1265900:CDS 60.0%
CAGCCTCTCTCTCATCCTGG+GGG + chr8_2:70505414-70505433 None:intergenic 60.0%
GCAGCCTCTCTCTCATCCTG+GGG + chr8_2:70505415-70505434 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 70503869 70505888 70503869 ID=Msa1265900;Name=Msa1265900
chr8_2 mRNA 70503869 70505888 70503869 ID=Msa1265900-mRNA-1;Parent=Msa1265900;Name=Msa1265900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=210|1|1|1|1|1|3|411|320
chr8_2 exon 70503869 70504639 70503869 ID=Msa1265900-mRNA-1:exon:23429;Parent=Msa1265900-mRNA-1
chr8_2 exon 70504950 70505351 70504950 ID=Msa1265900-mRNA-1:exon:23428;Parent=Msa1265900-mRNA-1
chr8_2 exon 70505478 70505888 70505478 ID=Msa1265900-mRNA-1:exon:23427;Parent=Msa1265900-mRNA-1
chr8_2 five_prime_UTR 70505679 70505888 70505679 ID=Msa1265900-mRNA-1:five_prime_utr;Parent=Msa1265900-mRNA-1
chr8_2 CDS 70505478 70505678 70505478 ID=Msa1265900-mRNA-1:cds;Parent=Msa1265900-mRNA-1
chr8_2 CDS 70504950 70505351 70504950 ID=Msa1265900-mRNA-1:cds;Parent=Msa1265900-mRNA-1
chr8_2 CDS 70504280 70504639 70504280 ID=Msa1265900-mRNA-1:cds;Parent=Msa1265900-mRNA-1
chr8_2 three_prime_UTR 70503869 70504279 70503869 ID=Msa1265900-mRNA-1:three_prime_utr;Parent=Msa1265900-mRNA-1
Gene Sequence

>Msa1265900

ATGATACCACCACCTTATCTATCTTCGTCCGTCATGCCTATTGATCTTAATCAAGATCAAAACCATGACCTTTCTAGTCCAAATTCTTCTTCTTCATTTTCTTCTCTATCAGCATCATATTCTACCCTCTTAGACTCACAAGATCAAGTTCAACAACCATCTTATTACTGCCAAACAAACAACTTACCACATGATCAAGAGGTTGAGAAGGTTAATATTCACTCAAGTGGATCATGGAATTCTTCAACTGCAGAAAACCATGAAAACTACAAGACTAAACACAAGCTGACAATTCGTTGGAAGAAAGAACAAATCAGTGATGAAATGAATAATAATCAAGAAGCTGATCATGAGGATGGTACTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATAATGAAGAAGATGATGGTTTCTGATCAAACGGGTAGTTCTAACTTAACAAGTAACTCTAAGCTGATTAAGTTTGAAGATCAAAAGCAACCACTGTCACCACAAGGAACAGATAATAGCAGCAGCAATAATTATTCAACTATTAGGGTTTGCTCTGATTGCAACACCACTAAGACCCCTCTATGGAGGAGTGGACCAAGAGGCCCAAAGTCACTTTGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCTTTGGCTGCTGCTGCAGCATCGGCAATTGGTACAACAATTGCTGATCAGACAGCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAATCCAAAATTGAGTTTGATTGTTCAACAGTGCATATGAAAAAGAAGCAGAAACTTGAAGCAAAACCATCTCATCAAACTAGAAAAGAGTTTATCACTTTTGAGGATTTGAAATTAAGCTTGAGTGAGAATTTGGGTGTTCAACAAGTTTTCCCCCAGGATGAGAGAGAGGCTGCAATCCTTCTCATGGCGTTATCTTATGGATTAGTCCATGGTTGA

Protein sequence

>Msa1265900

MIPPPYLSSSVMPIDLNQDQNHDLSSPNSSSSFSSLSASYSTLLDSQDQVQQPSYYCQTNNLPHDQEVEKVNIHSSGSWNSSTAENHENYKTKHKLTIRWKKEQISDEMNNNQEADHEDGTSVKWMSSKMRIMKKMMVSDQTGSSNLTSNSKLIKFEDQKQPLSPQGTDNSSSNNYSTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAASAIGTTIADQTASVKRKKLQKKKENKSKIEFDCSTVHMKKKQKLEAKPSHQTRKEFITFEDLKLSLSENLGVQQVFPQDEREAAILLMALSYGLVHG*