AlfalfaGEDB | Msa0104120

M. sativa cultivar zhongmu-4 / Msa0104120

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104120	XP_013467149.1	98.246	57	1	0	1	57	710	766	2.27e-31	124

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104120	sp\|Q9LIQ9\|BLI_ARATH	75.926	54	11	1	6	57	661	714	1.47e-21	88.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104120	A0A072VST2	98.246	57	1	0	1	57	710	766	1.08e-31	124

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017390	Msa0104120	0.849550	3.008527e-60	-8.615850e-47
Msa0033110	Msa0104120	0.801170	1.021533e-48	-8.615850e-47
Msa0048180	Msa0104120	0.801903	7.227439e-49	-8.615850e-47
Msa0065550	Msa0104120	0.822828	1.921919e-53	-8.615850e-47
Msa0084380	Msa0104120	0.802983	4.329359e-49	-8.615850e-47
Msa0090520	Msa0104120	0.817768	2.778459e-52	-8.615850e-47
Msa0104120	Msa0124450	0.809843	1.548349e-50	-8.615850e-47
Msa0104120	Msa0136120	0.800923	1.147744e-48	-8.615850e-47
Msa0104120	Msa0137990	0.815956	7.086360e-52	-8.615850e-47
Msa0104120	Msa0148080	0.829336	5.448839e-55	-8.615850e-47
Msa0104120	Msa0183900	0.810378	1.187708e-50	-8.615850e-47
Msa0104120	Msa0204960	0.823745	1.174148e-53	-8.615850e-47
Msa0104120	Msa0206690	0.800591	1.341455e-48	-8.615850e-47
Msa0104120	Msa0207670	0.808873	2.500665e-50	-8.615850e-47
Msa0104120	Msa0209350	0.804039	2.615787e-49	-8.615850e-47
Msa0104120	Msa0209500	0.811474	6.876864e-51	-8.615850e-47
Msa0104120	Msa0214550	0.824838	6.496658e-54	-8.615850e-47
Msa0104120	Msa0249580	0.815057	1.123253e-51	-8.615850e-47
Msa0104120	Msa0257490	0.817036	4.059997e-52	-8.615850e-47
Msa0104120	Msa0259210	0.810051	1.397212e-50	-8.615850e-47
Msa0104120	Msa0259430	0.808486	3.024266e-50	-8.615850e-47
Msa0104120	Msa0281530	0.829273	5.646033e-55	-8.615850e-47
Msa0104120	Msa0296790	0.804206	2.414065e-49	-8.615850e-47
Msa0104120	Msa0304510	0.801831	7.478124e-49	-8.615850e-47
Msa0104120	Msa0305610	0.804409	2.190347e-49	-8.615850e-47
Msa0104120	Msa0320590	0.813771	2.162083e-51	-8.615850e-47
Msa0104120	Msa0322240	0.804161	2.467098e-49	-8.615850e-47
Msa0104120	Msa0326480	0.822767	1.986576e-53	-8.615850e-47
Msa0104120	Msa0336320	0.808078	3.694891e-50	-8.615850e-47
Msa0104120	Msa0385500	0.800270	1.559099e-48	-8.615850e-47
Msa0104120	Msa0419720	0.820764	5.773200e-53	-8.615850e-47
Msa0104120	Msa0450480	0.805174	1.516450e-49	-8.615850e-47
Msa0104120	Msa0453350	0.805264	1.452017e-49	-8.615850e-47
Msa0104120	Msa0466250	0.806590	7.640529e-50	-8.615850e-47
Msa0104120	Msa0479170	0.800346	1.504395e-48	-8.615850e-47
Msa0104120	Msa0481970	0.812865	3.418332e-51	-8.615850e-47
Msa0104120	Msa0510930	0.812761	3.603806e-51	-8.615850e-47
Msa0104120	Msa0517640	0.805820	1.109783e-49	-8.615850e-47
Msa0104120	Msa0527020	0.813137	2.980448e-51	-8.615850e-47
Msa0104120	Msa0547160	0.826065	3.328615e-54	-8.615850e-47
Msa0104120	Msa0548240	0.801162	1.025479e-48	-8.615850e-47
Msa0104120	Msa0556060	0.810934	9.004198e-51	-8.615850e-47
Msa0104120	Msa0608500	0.814375	1.590755e-51	-8.615850e-47
Msa0104120	Msa0682680	0.811175	7.983236e-51	-8.615850e-47
Msa0104120	Msa0690360	0.806356	8.561134e-50	-8.615850e-47
Msa0104120	Msa0721280	0.800721	1.262190e-48	-8.615850e-47
Msa0104120	Msa0741440	0.809852	1.541601e-50	-8.615850e-47
Msa0104120	Msa0780930	0.801814	7.539626e-49	-8.615850e-47
Msa0104120	Msa0800370	0.800024	1.749654e-48	-8.615850e-47
Msa0104120	Msa0822500	0.806753	7.057989e-50	-8.615850e-47
Msa0104120	Msa0831100	0.801130	1.041109e-48	-8.615850e-47
Msa0104120	Msa0842790	0.813778	2.154063e-51	-8.615850e-47
Msa0104120	Msa0876190	0.802679	5.002985e-49	-8.615850e-47
Msa0104120	Msa0898750	0.812153	4.891929e-51	-8.615850e-47
Msa0104120	Msa0906780	0.809841	1.550282e-50	-8.615850e-47
Msa0104120	Msa0923780	0.804577	2.020503e-49	-8.615850e-47
Msa0104120	Msa0928130	0.811045	8.518329e-51	-8.615850e-47
Msa0104120	Msa0964310	0.802014	6.856949e-49	-8.615850e-47
Msa0104120	Msa0969810	0.801756	7.750343e-49	-8.615850e-47
Msa0104120	Msa1006840	0.803232	3.845726e-49	-8.615850e-47
Msa0104120	Msa1051330	0.805286	1.436435e-49	-8.615850e-47
Msa0104120	Msa1079230	0.813328	2.706433e-51	-8.615850e-47
Msa0104120	Msa1080640	0.830020	3.715700e-55	-8.615850e-47
Msa0104120	Msa1093840	0.818479	1.918435e-52	-8.615850e-47
Msa0104120	Msa1209440	0.801468	8.876566e-49	-8.615850e-47
Msa0104120	Msa1275590	0.808982	2.369492e-50	-8.615850e-47
Msa0104120	Msa1353980	0.831710	1.430688e-55	-8.615850e-47
Msa0104120	Msa1357890	0.800157	1.643717e-48	-8.615850e-47
Msa0104120	Msa1360980	0.819472	1.141019e-52	-8.615850e-47
Msa0104120	Msa1390700	0.802506	5.430877e-49	-8.615850e-47
Msa0104120	Msa1394500	0.817310	3.523196e-52	-8.615850e-47
Msa0104120	Msa1398090	0.808328	3.269298e-50	-8.615850e-47
Msa0104120	Msa1416370	0.812306	4.530992e-51	-8.615850e-47
Msa0104120	Msa1437270	0.805924	1.055228e-49	-8.615850e-47
Msa0104120	Msa1451160	0.812746	3.630425e-51	-8.615850e-47
Msa0104120	Msa1454680	0.803515	3.360473e-49	-8.615850e-47
Msa0104120	Msa1466540	0.800712	1.267438e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104120	MtrunA17_Chr1g0169181	98.246	57	1	0	1	57	710	766	2.08e-35	124

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104120	AT3G23980.1	75.926	54	11	1	6	57	661	714	1.49e-22	88.6

Find 60 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCCATATATGCAATTATTT+TGG	0.155948	1_3:+11643947	Msa0104120:three_prime_UTR
ACTACTCAAAACATGGTTAA+TGG	0.192030	1_3:+11643183	Msa0104120:exon
GGGTCTGGACCTCAAGTTTC+CGG	0.192845	1_3:-11643143	None:intergenic
TTCCAAAATAATTGCATATA+TGG	0.228349	1_3:-11643949	None:intergenic
AGTATTTCCTTTCAAATAAC+TGG	0.248186	1_3:-11644222	None:intergenic
ACGAAAATGTATAAAGCTAT+TGG	0.248791	1_3:+11643703	Msa0104120:three_prime_UTR
GCAAAATTCTTCAAAAGAAA+TGG	0.265858	1_3:+11643892	Msa0104120:three_prime_UTR
CCCGTTCCCACAAAGCTTCT+TGG	0.279682	1_3:-11644055	None:intergenic
CTTTGCCTTGGTTGGCATAC+TGG	0.297755	1_3:-11643747	None:intergenic
TAGTCAAAAGCTCTAATCTT+TGG	0.309700	1_3:-11643164	None:intergenic
TTAATGAGACGTGGAACTTT+TGG	0.316337	1_3:+11644088	Msa0104120:three_prime_UTR
CGCTGGTTCTTTGCCTTGGT+TGG	0.335802	1_3:-11643755	None:intergenic
AACTACTATTGCACAAAACT+TGG	0.341490	1_3:-11644015	None:intergenic
TTTGAAAGCTGTTTATTGAT+TGG	0.344259	1_3:+11643921	Msa0104120:three_prime_UTR
TGACCCGTTACTCATGGATC+TGG	0.350602	1_3:-11643787	None:intergenic
TATTATAGTTTCATTATACT+TGG	0.354225	1_3:-11644197	None:intergenic
GGTCTGGACCTCAAGTTTCC+GGG	0.375907	1_3:-11643142	None:intergenic
CCAAGAAGCTTTGTGGGAAC+GGG	0.381558	1_3:+11644055	Msa0104120:three_prime_UTR
CAAAATTCTTCAAAAGAAAT+GGG	0.386735	1_3:+11643893	Msa0104120:three_prime_UTR
CGAAAATGTATAAAGCTATT+GGG	0.393453	1_3:+11643704	Msa0104120:three_prime_UTR
AGTCAAAAGCTCTAATCTTT+GGG	0.418246	1_3:-11643163	None:intergenic
TGGATTATGAAGCTATTTCC+TGG	0.428453	1_3:+11643612	Msa0104120:CDS
AATGCGCTGGTTCTTTGCCT+TGG	0.438881	1_3:-11643759	None:intergenic
TGCATGCGTTACAGTCAATC+AGG	0.445988	1_3:-11644327	None:intergenic
TCATACGTAACACGAGAATC+TGG	0.451777	1_3:-11643234	None:intergenic
AGGCTACCAAGAAGCTTTGT+GGG	0.452765	1_3:+11644049	Msa0104120:three_prime_UTR
TAGGTGGTGGAAAGAGTGTT+GGG	0.470807	1_3:+11643588	Msa0104120:intron
AACCCAGATCCATGAGTAAC+GGG	0.470970	1_3:+11643784	Msa0104120:three_prime_UTR
ACCAAGAAGCTTTGTGGGAA+CGG	0.475945	1_3:+11644054	Msa0104120:three_prime_UTR
AAAGCTCTAATCTTTGGGTC+TGG	0.476751	1_3:-11643158	None:intergenic
GAGGCTACCAAGAAGCTTTG+TGG	0.481237	1_3:+11644048	Msa0104120:three_prime_UTR
CTTTGCTGACCCGTTACTCA+TGG	0.485656	1_3:-11643793	None:intergenic
ACATCTAACTTTATTGCTTG+CGG	0.514316	1_3:-11644298	None:intergenic
TGTTCGTTGCCTCAGTACAC+TGG	0.520756	1_3:+11643833	Msa0104120:three_prime_UTR
AACTAGCAAGCTTCTCTGAT+CGG	0.521333	1_3:+11643653	Msa0104120:exon
TTAGGTGGTGGAAAGAGTGT+TGG	0.530644	1_3:+11643587	Msa0104120:intron
ATTATAGTTTCATTATACTT+GGG	0.538337	1_3:-11644196	None:intergenic
TGGTGGAAAGAGTGTTGGGA+TGG	0.554103	1_3:+11643592	Msa0104120:CDS
GACCCGTTACTCATGGATCT+GGG	0.556398	1_3:-11643786	None:intergenic
AACCTCTCGCAGCATGAGCA+AGG	0.558469	1_3:-11644266	None:intergenic
ATAGTAGTTGGATATGAAAG+AGG	0.558602	1_3:+11644029	Msa0104120:three_prime_UTR
AGATAAACAAGGAGTTGTCC+CGG	0.563321	1_3:+11643124	Msa0104120:five_prime_UTR
GAACATTCCGTATGCAGATG+AGG	0.566725	1_3:+11643257	Msa0104120:CDS
TAATATACCAGTTATTTGAA+AGG	0.568653	1_3:+11644215	Msa0104120:three_prime_UTR
AATGTATAAAGCTATTGGGA+TGG	0.572003	1_3:+11643708	Msa0104120:three_prime_UTR
GGATCTGGGTTGAAATGCGC+TGG	0.574512	1_3:-11643772	None:intergenic
TCATCACCCTCATCTGCATA+CGG	0.574776	1_3:-11643264	None:intergenic
TCGTTGCCTCAGTACACTGG+AGG	0.583111	1_3:+11643836	Msa0104120:three_prime_UTR
CAACCCAGATCCATGAGTAA+CGG	0.583336	1_3:+11643783	Msa0104120:three_prime_UTR
TTATGAAGCTATTTCCTGGT+GGG	0.585082	1_3:+11643616	Msa0104120:CDS
AACATTCCGTATGCAGATGA+GGG	0.604691	1_3:+11643258	Msa0104120:CDS
AACCTTGCTCATGCTGCGAG+AGG	0.608215	1_3:+11644264	Msa0104120:three_prime_UTR
CAAGAAGCTTTGTGGGAACG+GGG	0.608805	1_3:+11644056	Msa0104120:three_prime_UTR
CGTTGCCTCAGTACACTGGA+GGG	0.631781	1_3:+11643837	Msa0104120:three_prime_UTR
ATTATTGAAGGAGATAAACA+AGG	0.637691	1_3:+11643113	None:intergenic
GTATGCAGATGAGGGTGATG+AGG	0.658889	1_3:+11643266	Msa0104120:CDS
GGAGTTGTCCCGGAAACTTG+AGG	0.672278	1_3:+11643134	Msa0104120:five_prime_UTR
ATTATGAAGCTATTTCCTGG+TGG	0.680779	1_3:+11643615	Msa0104120:CDS
ATGGCAATAAATCTGTTCTG+CGG	0.681705	1_3:+11643973	Msa0104120:three_prime_UTR
TCACGCCCTCCAGTGTACTG+AGG	0.701339	1_3:-11643842	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CAAGTATATAAGAAAAAAAA+TGG	+	chr1_3:11643424-11643443	Msa0104120:intron	15.0%
!!	ATTATAGTTTCATTATACTT+GGG	-	chr1_3:11644199-11644218	None:intergenic	15.0%
!!	TATTATAGTTTCATTATACT+TGG	-	chr1_3:11644200-11644219	None:intergenic	15.0%
!!	CAAGTATATAAGAAAAAAAA+TGG	+	chr1_3:11643424-11643443	Msa0104120:intron	15.0%
!!	ATTATAGTTTCATTATACTT+GGG	-	chr1_3:11644199-11644218	None:intergenic	15.0%
!!	TATTATAGTTTCATTATACT+TGG	-	chr1_3:11644200-11644219	None:intergenic	15.0%
!!	TTGTAATCATTAAGAATACT+AGG	+	chr1_3:11643519-11643538	Msa0104120:intron	20.0%
!!	TGTAATCATTAAGAATACTA+GGG	+	chr1_3:11643520-11643539	Msa0104120:intron	20.0%
!!	TAGAAACTTGAATTAAAAGA+AGG	+	chr1_3:11643544-11643563	Msa0104120:intron	20.0%
!!	CAAAATTCTTCAAAAGAAAT+GGG	+	chr1_3:11643893-11643912	Msa0104120:three_prime_UTR	20.0%
!!!	TTCCATATATGCAATTATTT+TGG	+	chr1_3:11643947-11643966	Msa0104120:three_prime_UTR	20.0%
!!	TTCCAAAATAATTGCATATA+TGG	-	chr1_3:11643952-11643971	None:intergenic	20.0%
!!	TAATATACCAGTTATTTGAA+AGG	+	chr1_3:11644215-11644234	Msa0104120:three_prime_UTR	20.0%
!!	TTGTAATCATTAAGAATACT+AGG	+	chr1_3:11643519-11643538	Msa0104120:intron	20.0%
!!	TGTAATCATTAAGAATACTA+GGG	+	chr1_3:11643520-11643539	Msa0104120:intron	20.0%
!!	TAGAAACTTGAATTAAAAGA+AGG	+	chr1_3:11643544-11643563	Msa0104120:intron	20.0%
!!	CAAAATTCTTCAAAAGAAAT+GGG	+	chr1_3:11643893-11643912	Msa0104120:three_prime_UTR	20.0%
!!!	TTCCATATATGCAATTATTT+TGG	+	chr1_3:11643947-11643966	Msa0104120:three_prime_UTR	20.0%
!!	TTCCAAAATAATTGCATATA+TGG	-	chr1_3:11643952-11643971	None:intergenic	20.0%
!!	TAATATACCAGTTATTTGAA+AGG	+	chr1_3:11644215-11644234	Msa0104120:three_prime_UTR	20.0%
!	TTTCAGTTGCATAATATAAC+TGG	-	chr1_3:11643382-11643401	None:intergenic	25.0%
!!!	TTGACATCTCTTTTTGTTTT+AGG	+	chr1_3:11643569-11643588	Msa0104120:intron	25.0%
!	ACGAAAATGTATAAAGCTAT+TGG	+	chr1_3:11643703-11643722	Msa0104120:three_prime_UTR	25.0%
!	CGAAAATGTATAAAGCTATT+GGG	+	chr1_3:11643704-11643723	Msa0104120:three_prime_UTR	25.0%
!	GCAAAATTCTTCAAAAGAAA+TGG	+	chr1_3:11643892-11643911	Msa0104120:three_prime_UTR	25.0%
!	TTTGAAAGCTGTTTATTGAT+TGG	+	chr1_3:11643921-11643940	Msa0104120:three_prime_UTR	25.0%
!!!	TATGCAATTATTTTGGAAGA+TGG	+	chr1_3:11643954-11643973	Msa0104120:three_prime_UTR	25.0%
!	AGTATTTCCTTTCAAATAAC+TGG	-	chr1_3:11644225-11644244	None:intergenic	25.0%
!	TTTCAGTTGCATAATATAAC+TGG	-	chr1_3:11643382-11643401	None:intergenic	25.0%
!!!	TTGACATCTCTTTTTGTTTT+AGG	+	chr1_3:11643569-11643588	Msa0104120:intron	25.0%
!	ACGAAAATGTATAAAGCTAT+TGG	+	chr1_3:11643703-11643722	Msa0104120:three_prime_UTR	25.0%
!	CGAAAATGTATAAAGCTATT+GGG	+	chr1_3:11643704-11643723	Msa0104120:three_prime_UTR	25.0%
!	GCAAAATTCTTCAAAAGAAA+TGG	+	chr1_3:11643892-11643911	Msa0104120:three_prime_UTR	25.0%
!	TTTGAAAGCTGTTTATTGAT+TGG	+	chr1_3:11643921-11643940	Msa0104120:three_prime_UTR	25.0%
!!!	TATGCAATTATTTTGGAAGA+TGG	+	chr1_3:11643954-11643973	Msa0104120:three_prime_UTR	25.0%
!	AGTATTTCCTTTCAAATAAC+TGG	-	chr1_3:11644225-11644244	None:intergenic	25.0%
!	AGTCAAAAGCTCTAATCTTT+GGG	-	chr1_3:11643166-11643185	None:intergenic	30.0%
!	TAGTCAAAAGCTCTAATCTT+TGG	-	chr1_3:11643167-11643186	None:intergenic	30.0%
	ACTACTCAAAACATGGTTAA+TGG	+	chr1_3:11643183-11643202	Msa0104120:exon	30.0%
	GAATTTACTGACAATAGATG+AGG	-	chr1_3:11643360-11643379	None:intergenic	30.0%
!!	AAACATCGATTTCATTGTCA+AGG	+	chr1_3:11643448-11643467	Msa0104120:intron	30.0%
!!	AACATCGATTTCATTGTCAA+GGG	+	chr1_3:11643449-11643468	Msa0104120:intron	30.0%
!!!	ACATCTCTTTTTGTTTTAGG+TGG	+	chr1_3:11643572-11643591	Msa0104120:intron	30.0%
	AATGTATAAAGCTATTGGGA+TGG	+	chr1_3:11643708-11643727	Msa0104120:three_prime_UTR	30.0%
	AACTACTATTGCACAAAACT+TGG	-	chr1_3:11644018-11644037	None:intergenic	30.0%
!!	AAGTTTTGTGCAATAGTAGT+TGG	+	chr1_3:11644017-11644036	Msa0104120:three_prime_UTR	30.0%
	ATAGTAGTTGGATATGAAAG+AGG	+	chr1_3:11644029-11644048	Msa0104120:three_prime_UTR	30.0%
!	CAATTTTCTTTAATGAGACG+TGG	+	chr1_3:11644079-11644098	Msa0104120:three_prime_UTR	30.0%
	ACATCTAACTTTATTGCTTG+CGG	-	chr1_3:11644301-11644320	None:intergenic	30.0%
!	AGTCAAAAGCTCTAATCTTT+GGG	-	chr1_3:11643166-11643185	None:intergenic	30.0%
!	TAGTCAAAAGCTCTAATCTT+TGG	-	chr1_3:11643167-11643186	None:intergenic	30.0%
	ACTACTCAAAACATGGTTAA+TGG	+	chr1_3:11643183-11643202	Msa0104120:exon	30.0%
	GAATTTACTGACAATAGATG+AGG	-	chr1_3:11643360-11643379	None:intergenic	30.0%
!!	AAACATCGATTTCATTGTCA+AGG	+	chr1_3:11643448-11643467	Msa0104120:intron	30.0%
!!	AACATCGATTTCATTGTCAA+GGG	+	chr1_3:11643449-11643468	Msa0104120:intron	30.0%
!!!	ACATCTCTTTTTGTTTTAGG+TGG	+	chr1_3:11643572-11643591	Msa0104120:intron	30.0%
	AATGTATAAAGCTATTGGGA+TGG	+	chr1_3:11643708-11643727	Msa0104120:three_prime_UTR	30.0%
	AACTACTATTGCACAAAACT+TGG	-	chr1_3:11644018-11644037	None:intergenic	30.0%
!!	AAGTTTTGTGCAATAGTAGT+TGG	+	chr1_3:11644017-11644036	Msa0104120:three_prime_UTR	30.0%
	ATAGTAGTTGGATATGAAAG+AGG	+	chr1_3:11644029-11644048	Msa0104120:three_prime_UTR	30.0%
!	CAATTTTCTTTAATGAGACG+TGG	+	chr1_3:11644079-11644098	Msa0104120:three_prime_UTR	30.0%
	ACATCTAACTTTATTGCTTG+CGG	-	chr1_3:11644301-11644320	None:intergenic	30.0%
!!	GCTTTTGACTACTCAAAACA+TGG	+	chr1_3:11643176-11643195	Msa0104120:exon	35.0%
	GACAGTTGTGCAATTTATGT+TGG	+	chr1_3:11643292-11643311	Msa0104120:intron	35.0%
	TATGCAACTGAAACGTTTAC+TGG	+	chr1_3:11643389-11643408	Msa0104120:intron	35.0%
!!!	TCTCTTTTTGTTTTAGGTGG+TGG	+	chr1_3:11643575-11643594	Msa0104120:intron	35.0%
!	TGGATTATGAAGCTATTTCC+TGG	+	chr1_3:11643612-11643631	Msa0104120:CDS	35.0%
!	ATTATGAAGCTATTTCCTGG+TGG	+	chr1_3:11643615-11643634	Msa0104120:CDS	35.0%
!	TTATGAAGCTATTTCCTGGT+GGG	+	chr1_3:11643616-11643635	Msa0104120:CDS	35.0%
!!	TTGCTAGTTCTTCGTTTTGA+TGG	-	chr1_3:11643642-11643661	None:intergenic	35.0%
	ATGGCAATAAATCTGTTCTG+CGG	+	chr1_3:11643973-11643992	Msa0104120:three_prime_UTR	35.0%
!	TTAATGAGACGTGGAACTTT+TGG	+	chr1_3:11644088-11644107	Msa0104120:three_prime_UTR	35.0%
!!	TTTTGGTGACTGTATATGCA+AGG	+	chr1_3:11644105-11644124	Msa0104120:three_prime_UTR	35.0%
!!	GCTTTTGACTACTCAAAACA+TGG	+	chr1_3:11643176-11643195	Msa0104120:exon	35.0%
	GACAGTTGTGCAATTTATGT+TGG	+	chr1_3:11643292-11643311	Msa0104120:intron	35.0%
	TATGCAACTGAAACGTTTAC+TGG	+	chr1_3:11643389-11643408	Msa0104120:intron	35.0%
!!!	TCTCTTTTTGTTTTAGGTGG+TGG	+	chr1_3:11643575-11643594	Msa0104120:intron	35.0%
!	TGGATTATGAAGCTATTTCC+TGG	+	chr1_3:11643612-11643631	Msa0104120:CDS	35.0%
!	ATTATGAAGCTATTTCCTGG+TGG	+	chr1_3:11643615-11643634	Msa0104120:CDS	35.0%
!	TTATGAAGCTATTTCCTGGT+GGG	+	chr1_3:11643616-11643635	Msa0104120:CDS	35.0%
!!	TTGCTAGTTCTTCGTTTTGA+TGG	-	chr1_3:11643642-11643661	None:intergenic	35.0%
	ATGGCAATAAATCTGTTCTG+CGG	+	chr1_3:11643973-11643992	Msa0104120:three_prime_UTR	35.0%
!	TTAATGAGACGTGGAACTTT+TGG	+	chr1_3:11644088-11644107	Msa0104120:three_prime_UTR	35.0%
!!	TTTTGGTGACTGTATATGCA+AGG	+	chr1_3:11644105-11644124	Msa0104120:three_prime_UTR	35.0%
	AGATAAACAAGGAGTTGTCC+CGG	+	chr1_3:11643124-11643143	Msa0104120:five_prime_UTR	40.0%
!	AAAGCTCTAATCTTTGGGTC+TGG	-	chr1_3:11643161-11643180	None:intergenic	40.0%
	TCATACGTAACACGAGAATC+TGG	-	chr1_3:11643237-11643256	None:intergenic	40.0%
	AACATTCCGTATGCAGATGA+GGG	+	chr1_3:11643258-11643277	Msa0104120:CDS	40.0%
!	ATCGATTTCATTGTCAAGGG+TGG	+	chr1_3:11643452-11643471	Msa0104120:intron	40.0%
	TTGTCAAGGGTGGAAATAGT+TGG	+	chr1_3:11643462-11643481	Msa0104120:intron	40.0%
!	TGGAAATAGTTGGTCTATGC+AGG	+	chr1_3:11643472-11643491	Msa0104120:intron	40.0%
	AACTAGCAAGCTTCTCTGAT+CGG	+	chr1_3:11643653-11643672	Msa0104120:exon	40.0%
	AGATAAACAAGGAGTTGTCC+CGG	+	chr1_3:11643124-11643143	Msa0104120:five_prime_UTR	40.0%
!	AAAGCTCTAATCTTTGGGTC+TGG	-	chr1_3:11643161-11643180	None:intergenic	40.0%
	TCATACGTAACACGAGAATC+TGG	-	chr1_3:11643237-11643256	None:intergenic	40.0%
	AACATTCCGTATGCAGATGA+GGG	+	chr1_3:11643258-11643277	Msa0104120:CDS	40.0%
!	ATCGATTTCATTGTCAAGGG+TGG	+	chr1_3:11643452-11643471	Msa0104120:intron	40.0%
	TTGTCAAGGGTGGAAATAGT+TGG	+	chr1_3:11643462-11643481	Msa0104120:intron	40.0%
!	TGGAAATAGTTGGTCTATGC+AGG	+	chr1_3:11643472-11643491	Msa0104120:intron	40.0%
	AACTAGCAAGCTTCTCTGAT+CGG	+	chr1_3:11643653-11643672	Msa0104120:exon	40.0%
	GAACATTCCGTATGCAGATG+AGG	+	chr1_3:11643257-11643276	Msa0104120:CDS	45.0%
	TCATCACCCTCATCTGCATA+CGG	-	chr1_3:11643267-11643286	None:intergenic	45.0%
!!	TTAGGTGGTGGAAAGAGTGT+TGG	+	chr1_3:11643587-11643606	Msa0104120:intron	45.0%
!!	TAGGTGGTGGAAAGAGTGTT+GGG	+	chr1_3:11643588-11643607	Msa0104120:intron	45.0%
!	GTTTTCCAGTATGCCAACCA+AGG	+	chr1_3:11643742-11643761	Msa0104120:three_prime_UTR	45.0%
	CAACCCAGATCCATGAGTAA+CGG	+	chr1_3:11643783-11643802	Msa0104120:three_prime_UTR	45.0%
	AACCCAGATCCATGAGTAAC+GGG	+	chr1_3:11643784-11643803	Msa0104120:three_prime_UTR	45.0%
!	AGGCTACCAAGAAGCTTTGT+GGG	+	chr1_3:11644049-11644068	Msa0104120:three_prime_UTR	45.0%
!	ACCAAGAAGCTTTGTGGGAA+CGG	+	chr1_3:11644054-11644073	Msa0104120:three_prime_UTR	45.0%
	TGCATGCGTTACAGTCAATC+AGG	-	chr1_3:11644330-11644349	None:intergenic	45.0%
	GAACATTCCGTATGCAGATG+AGG	+	chr1_3:11643257-11643276	Msa0104120:CDS	45.0%
	TCATCACCCTCATCTGCATA+CGG	-	chr1_3:11643267-11643286	None:intergenic	45.0%
!!	TTAGGTGGTGGAAAGAGTGT+TGG	+	chr1_3:11643587-11643606	Msa0104120:intron	45.0%
!!	TAGGTGGTGGAAAGAGTGTT+GGG	+	chr1_3:11643588-11643607	Msa0104120:intron	45.0%
!	GTTTTCCAGTATGCCAACCA+AGG	+	chr1_3:11643742-11643761	Msa0104120:three_prime_UTR	45.0%
	CAACCCAGATCCATGAGTAA+CGG	+	chr1_3:11643783-11643802	Msa0104120:three_prime_UTR	45.0%
	AACCCAGATCCATGAGTAAC+GGG	+	chr1_3:11643784-11643803	Msa0104120:three_prime_UTR	45.0%
!	AGGCTACCAAGAAGCTTTGT+GGG	+	chr1_3:11644049-11644068	Msa0104120:three_prime_UTR	45.0%
!	ACCAAGAAGCTTTGTGGGAA+CGG	+	chr1_3:11644054-11644073	Msa0104120:three_prime_UTR	45.0%
	TGCATGCGTTACAGTCAATC+AGG	-	chr1_3:11644330-11644349	None:intergenic	45.0%
	GTATGCAGATGAGGGTGATG+AGG	+	chr1_3:11643266-11643285	Msa0104120:CDS	50.0%
!!	TGGTGGAAAGAGTGTTGGGA+TGG	+	chr1_3:11643592-11643611	Msa0104120:CDS	50.0%
	CTTTGCCTTGGTTGGCATAC+TGG	-	chr1_3:11643750-11643769	None:intergenic	50.0%
!!	AATGCGCTGGTTCTTTGCCT+TGG	-	chr1_3:11643762-11643781	None:intergenic	50.0%
	GACCCGTTACTCATGGATCT+GGG	-	chr1_3:11643789-11643808	None:intergenic	50.0%
	TGACCCGTTACTCATGGATC+TGG	-	chr1_3:11643790-11643809	None:intergenic	50.0%
	CTTTGCTGACCCGTTACTCA+TGG	-	chr1_3:11643796-11643815	None:intergenic	50.0%
	TGTTCGTTGCCTCAGTACAC+TGG	+	chr1_3:11643833-11643852	Msa0104120:three_prime_UTR	50.0%
	GAGGCTACCAAGAAGCTTTG+TGG	+	chr1_3:11644048-11644067	Msa0104120:three_prime_UTR	50.0%
!	CCAAGAAGCTTTGTGGGAAC+GGG	+	chr1_3:11644055-11644074	Msa0104120:three_prime_UTR	50.0%
!	CAAGAAGCTTTGTGGGAACG+GGG	+	chr1_3:11644056-11644075	Msa0104120:three_prime_UTR	50.0%
	GTATGCAGATGAGGGTGATG+AGG	+	chr1_3:11643266-11643285	Msa0104120:CDS	50.0%
!!	TGGTGGAAAGAGTGTTGGGA+TGG	+	chr1_3:11643592-11643611	Msa0104120:CDS	50.0%
	CTTTGCCTTGGTTGGCATAC+TGG	-	chr1_3:11643750-11643769	None:intergenic	50.0%
!!	AATGCGCTGGTTCTTTGCCT+TGG	-	chr1_3:11643762-11643781	None:intergenic	50.0%
	GACCCGTTACTCATGGATCT+GGG	-	chr1_3:11643789-11643808	None:intergenic	50.0%
	TGACCCGTTACTCATGGATC+TGG	-	chr1_3:11643790-11643809	None:intergenic	50.0%
	CTTTGCTGACCCGTTACTCA+TGG	-	chr1_3:11643796-11643815	None:intergenic	50.0%
	TGTTCGTTGCCTCAGTACAC+TGG	+	chr1_3:11643833-11643852	Msa0104120:three_prime_UTR	50.0%
	GAGGCTACCAAGAAGCTTTG+TGG	+	chr1_3:11644048-11644067	Msa0104120:three_prime_UTR	50.0%
!	CCAAGAAGCTTTGTGGGAAC+GGG	+	chr1_3:11644055-11644074	Msa0104120:three_prime_UTR	50.0%
!	CAAGAAGCTTTGTGGGAACG+GGG	+	chr1_3:11644056-11644075	Msa0104120:three_prime_UTR	50.0%
	GGAGTTGTCCCGGAAACTTG+AGG	+	chr1_3:11643134-11643153	Msa0104120:five_prime_UTR	55.0%
	GGTCTGGACCTCAAGTTTCC+GGG	-	chr1_3:11643145-11643164	None:intergenic	55.0%
	GGGTCTGGACCTCAAGTTTC+CGG	-	chr1_3:11643146-11643165	None:intergenic	55.0%
!!	CTTCGTTTTGATGGCCCACC+AGG	-	chr1_3:11643633-11643652	None:intergenic	55.0%
!!	CGCTGGTTCTTTGCCTTGGT+TGG	-	chr1_3:11643758-11643777	None:intergenic	55.0%
!	GGATCTGGGTTGAAATGCGC+TGG	-	chr1_3:11643775-11643794	None:intergenic	55.0%
	TCGTTGCCTCAGTACACTGG+AGG	+	chr1_3:11643836-11643855	Msa0104120:three_prime_UTR	55.0%
	CGTTGCCTCAGTACACTGGA+GGG	+	chr1_3:11643837-11643856	Msa0104120:three_prime_UTR	55.0%
	CCCGTTCCCACAAAGCTTCT+TGG	-	chr1_3:11644058-11644077	None:intergenic	55.0%
	AACCTTGCTCATGCTGCGAG+AGG	+	chr1_3:11644264-11644283	Msa0104120:three_prime_UTR	55.0%
	AACCTCTCGCAGCATGAGCA+AGG	-	chr1_3:11644269-11644288	None:intergenic	55.0%
	GGAGTTGTCCCGGAAACTTG+AGG	+	chr1_3:11643134-11643153	Msa0104120:five_prime_UTR	55.0%
	GGTCTGGACCTCAAGTTTCC+GGG	-	chr1_3:11643145-11643164	None:intergenic	55.0%
	GGGTCTGGACCTCAAGTTTC+CGG	-	chr1_3:11643146-11643165	None:intergenic	55.0%
!!	CTTCGTTTTGATGGCCCACC+AGG	-	chr1_3:11643633-11643652	None:intergenic	55.0%
!!	CGCTGGTTCTTTGCCTTGGT+TGG	-	chr1_3:11643758-11643777	None:intergenic	55.0%
!	GGATCTGGGTTGAAATGCGC+TGG	-	chr1_3:11643775-11643794	None:intergenic	55.0%
	TCGTTGCCTCAGTACACTGG+AGG	+	chr1_3:11643836-11643855	Msa0104120:three_prime_UTR	55.0%
	CGTTGCCTCAGTACACTGGA+GGG	+	chr1_3:11643837-11643856	Msa0104120:three_prime_UTR	55.0%
	CCCGTTCCCACAAAGCTTCT+TGG	-	chr1_3:11644058-11644077	None:intergenic	55.0%
	AACCTTGCTCATGCTGCGAG+AGG	+	chr1_3:11644264-11644283	Msa0104120:three_prime_UTR	55.0%
	AACCTCTCGCAGCATGAGCA+AGG	-	chr1_3:11644269-11644288	None:intergenic	55.0%
	TCACGCCCTCCAGTGTACTG+AGG	-	chr1_3:11643845-11643864	None:intergenic	60.0%
	TCACGCCCTCCAGTGTACTG+AGG	-	chr1_3:11643845-11643864	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	11643124	11644351	11643124	ID=Msa0104120;Name=Msa0104120
chr1_3	mRNA	11643124	11644351	11643124	ID=Msa0104120-mRNA-1;Parent=Msa0104120;Name=Msa0104120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=71\|1\|1\|1\|1\|1\|2\|680\|57
chr1_3	exon	11643124	11643287	11643124	ID=Msa0104120-mRNA-1:exon:4714;Parent=Msa0104120-mRNA-1
chr1_3	exon	11643591	11644351	11643591	ID=Msa0104120-mRNA-1:exon:4715;Parent=Msa0104120-mRNA-1
chr1_3	five_prime_UTR	11643124	11643194	11643124	ID=Msa0104120-mRNA-1:five_prime_utr;Parent=Msa0104120-mRNA-1
chr1_3	CDS	11643195	11643287	11643195	ID=Msa0104120-mRNA-1:cds;Parent=Msa0104120-mRNA-1
chr1_3	CDS	11643591	11643671	11643591	ID=Msa0104120-mRNA-1:cds;Parent=Msa0104120-mRNA-1
chr1_3	three_prime_UTR	11643672	11644351	11643672	ID=Msa0104120-mRNA-1:three_prime_utr;Parent=Msa0104120-mRNA-1

Gene Sequence	>Msa0104120 ATGGTTAATGGAAATATTGATAATATTTCGACAAAACAACCAGATTCTCGTGTTACGTATGAGAACATTCCGTATGCAGATGAGGGTGATGAGGTGGTGGAAAGAGTGTTGGGATGGATTATGAAGCTATTTCCTGGTGGGCCATCAAAACGAAGAACTAGCAAGCTTCTCTGA
Protein sequence	>Msa0104120 MVNGNIDNISTKQPDSRVTYENIPYADEGDEVVERVLGWIMKLFPGGPSKRRTSKLL*