AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394500 MtrunA17_Chr4g0040761 99.394 165 1 0 7 171 623 787 4.82e-109 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394500 AT1G77030.1 63.889 144 43 2 7 150 631 765 3.70e-50 172

Find 54 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCCAAGATATCTCTTAA+AGG 0.249480 tig0021860:+1013 Msa1394500:CDS
ATACAGATGCACCAGAATTT+TGG 0.268223 tig0021860:-1847 None:intergenic
AATGATTTCTACCAAAATTC+TGG 0.270804 tig0021860:+1836 Msa1394500:three_prime_UTR
TAATAGGAAAACGCAAATTT+TGG 0.271020 tig0021860:+1911 Msa1394500:three_prime_UTR
TGTCCCTTTAAGAGATATCT+TGG 0.318198 tig0021860:-1017 None:intergenic
AAGTATGAAACCCAAGTAAT+AGG 0.338310 tig0021860:+1895 Msa1394500:three_prime_UTR
TTTATATATACCAGTCTTGT+TGG 0.345904 tig0021860:-972 None:intergenic
TGTACGTATTACATATCATT+AGG 0.406603 tig0021860:-554 None:intergenic
TTATTTCCTCCCTTTCTGCC+AGG 0.408523 tig0021860:-1752 None:intergenic
CCGTTCAGAAATCAAAGATA+TGG 0.414166 tig0021860:+1643 Msa1394500:CDS
CATCATCTGCACCTAGATCT+AGG 0.420776 tig0021860:-593 None:intergenic
AGACGAATATTAATTAATCA+AGG 0.439009 tig0021860:-2071 None:intergenic
TTCTGAACGGACATGAGCAT+TGG 0.451510 tig0021860:-1630 None:intergenic
TAATAATGAACAAAAGTTGT+TGG 0.459707 tig0021860:-1954 None:intergenic
ACTCCAAGATATCTCTTAAA+GGG 0.465300 tig0021860:+1014 Msa1394500:CDS
GGTGACCGTGTTGCTGCAAA+TGG 0.474783 tig0021860:+800 Msa1394500:CDS
TCGGGCAAACCTGGCAGAAA+GGG 0.481527 tig0021860:+1743 Msa1394500:CDS
AAAACAAAGGCCAACAAGAC+TGG 0.481592 tig0021860:+962 Msa1394500:CDS
GATGATGCTGTCCTAGATCT+AGG 0.482099 tig0021860:+582 Msa1394500:CDS
ATCTGTATATCACTGGGATA+AGG 0.482868 tig0021860:+638 Msa1394500:CDS
TTTGAACATACAAAATTCGT+TGG 0.493891 tig0021860:-1988 None:intergenic
TGTAATTCCTACCACCTCCT+TGG 0.494025 tig0021860:-1580 None:intergenic
CTTCAGAAGTTAATTAGTCA+TGG 0.499748 tig0021860:+1803 Msa1394500:three_prime_UTR
GATATGTAATACGTACAGAT+TGG 0.499946 tig0021860:+560 Msa1394500:CDS
TCTGAACGGACATGAGCATT+GGG 0.504949 tig0021860:-1629 None:intergenic
ATCGGGCAAACCTGGCAGAA+AGG 0.506439 tig0021860:+1742 Msa1394500:CDS
AAGTGCTGATGGTGATGCTC+AGG 0.527916 tig0021860:+1039 Msa1394500:CDS
ATGAAGAGCAAGTCGCCAAA+GGG 0.541237 tig0021860:+1713 Msa1394500:CDS
GAAGTTAATTAGTCATGGAA+AGG 0.542560 tig0021860:+1808 Msa1394500:three_prime_UTR
GACGAATATTAATTAATCAA+GGG 0.542887 tig0021860:-2070 None:intergenic
CTTAAAGGGACAAGTGCTGA+TGG 0.546544 tig0021860:+1028 Msa1394500:CDS
TCTGTATCTTCAAAAGAATG+AGG 0.551612 tig0021860:+1863 Msa1394500:three_prime_UTR
CCATATCTTTGATTTCTGAA+CGG 0.567360 tig0021860:-1643 None:intergenic
ACGAATATTAATTAATCAAG+GGG 0.567848 tig0021860:-2069 None:intergenic
TCAAGGGGCTGCTATGTACA+AGG 0.573356 tig0021860:-2054 None:intergenic
TATGAAGAGCAAGTCGCCAA+AGG 0.586947 tig0021860:+1712 Msa1394500:CDS
CTGTATCTTCAAAAGAATGA+GGG 0.597833 tig0021860:+1864 Msa1394500:three_prime_UTR
GCAGGATCTTACCAAGGAGG+TGG 0.601477 tig0021860:+1569 Msa1394500:intron
CCTTTCCATTTGCAGCAACA+CGG 0.606680 tig0021860:-805 None:intergenic
CTAGGTGCAGATGATGGTGC+TGG 0.610267 tig0021860:+600 Msa1394500:CDS
GGCAAACCTGGCAGAAAGGG+AGG 0.611042 tig0021860:+1746 Msa1394500:CDS
CAGGAATCAAGAAGTTCAAG+AGG 0.613056 tig0021860:+1058 Msa1394500:CDS
CTAGATCTAGGTGCAGATGA+TGG 0.616568 tig0021860:+594 Msa1394500:CDS
AGATATGGATCAAATTCGAA+AGG 0.621726 tig0021860:+1658 Msa1394500:CDS
GATCTTACCAAGGAGGTGGT+AGG 0.625386 tig0021860:+1573 Msa1394500:CDS
TGGATCAAATTCGAAAGGAG+AGG 0.630192 tig0021860:+1663 Msa1394500:CDS
TGTAATGCAGGATCTTACCA+AGG 0.633767 tig0021860:+1563 Msa1394500:intron
TGTATCTTCAAAAGAATGAG+GGG 0.641007 tig0021860:+1865 Msa1394500:three_prime_UTR
CCGTGTTGCTGCAAATGGAA+AGG 0.656199 tig0021860:+805 Msa1394500:CDS
GTACAGATAAAGACAGAGAG+TGG 0.661316 tig0021860:+935 Msa1394500:intron
GGAGGTGGTAGGAATTACAA+AGG 0.689823 tig0021860:+1584 Msa1394500:CDS
AAGTACATCAAGTTAAACAA+CGG 0.702694 tig0021860:+779 Msa1394500:CDS
GGTGGTAGGAATTACAAAGG+CGG 0.725568 tig0021860:+1587 Msa1394500:CDS
AATGCAGGATCTTACCAAGG+AGG 0.746430 tig0021860:+1566 Msa1394500:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGTTTATAAGAAATAAA+TGG - tig0021860:741-760 None:intergenic 15.0%
!! AATAAAAATGTTATGTTCTA+CGG - tig0021860:905-924 None:intergenic 15.0%
!!! ATAACATTTTTATTTCTACT+TGG + tig0021860:911-930 Msa1394500:intron 15.0%
!!! TTCATTACTTACTTTAATTT+AGG + tig0021860:1093-1112 Msa1394500:intron 15.0%
!!! TCATTACTTACTTTAATTTA+GGG + tig0021860:1094-1113 Msa1394500:intron 15.0%
!!! TTTGTTTCTTGAATATTTTT+TGG - tig0021860:1256-1275 None:intergenic 15.0%
!!! TTTTTTTTGTTGGTTATTAA+TGG + tig0021860:1516-1535 Msa1394500:intron 15.0%
!! AAAGGTTTATAAGAAATAAA+TGG - tig0021860:741-760 None:intergenic 15.0%
!! AATAAAAATGTTATGTTCTA+CGG - tig0021860:905-924 None:intergenic 15.0%
!!! ATAACATTTTTATTTCTACT+TGG + tig0021860:911-930 Msa1394500:intron 15.0%
!!! TTCATTACTTACTTTAATTT+AGG + tig0021860:1093-1112 Msa1394500:intron 15.0%
!!! TCATTACTTACTTTAATTTA+GGG + tig0021860:1094-1113 Msa1394500:intron 15.0%
!!! TTTGTTTCTTGAATATTTTT+TGG - tig0021860:1256-1275 None:intergenic 15.0%
!!! TTTTTTTTGTTGGTTATTAA+TGG + tig0021860:1516-1535 Msa1394500:intron 15.0%
!! ATAAAAATGTTATGTTCTAC+GGG - tig0021860:904-923 None:intergenic 20.0%
!!! TTTAATTTAGGGATGATAAT+GGG + tig0021860:1105-1124 Msa1394500:intron 20.0%
!! TATTCAAGAAACAAAAACAT+AGG + tig0021860:1261-1280 Msa1394500:intron 20.0%
!! TAATAATGAACAAAAGTTGT+TGG - tig0021860:1957-1976 None:intergenic 20.0%
!! ATAAAAATGTTATGTTCTAC+GGG - tig0021860:904-923 None:intergenic 20.0%
!!! TTTAATTTAGGGATGATAAT+GGG + tig0021860:1105-1124 Msa1394500:intron 20.0%
!! TATTCAAGAAACAAAAACAT+AGG + tig0021860:1261-1280 Msa1394500:intron 20.0%
!! TAATAATGAACAAAAGTTGT+TGG - tig0021860:1957-1976 None:intergenic 20.0%
! AACAAAAATCTGTATATCAC+TGG + tig0021860:631-650 Msa1394500:CDS 25.0%
! ACAAAAATCTGTATATCACT+GGG + tig0021860:632-651 Msa1394500:CDS 25.0%
! GGTTTAATTGTAAAAAAGAC+AGG + tig0021860:678-697 Msa1394500:intron 25.0%
! AAGTACATCAAGTTAAACAA+CGG + tig0021860:779-798 Msa1394500:CDS 25.0%
!! TTTATATATACCAGTCTTGT+TGG - tig0021860:975-994 None:intergenic 25.0%
! AGACTGGTATATATAAAAAG+TGG + tig0021860:978-997 Msa1394500:CDS 25.0%
! TGGTATATATAAAAAGTGGA+AGG + tig0021860:982-1001 Msa1394500:CDS 25.0%
!! CTTTAATTTAGGGATGATAA+TGG + tig0021860:1104-1123 Msa1394500:intron 25.0%
!! TTAATTTAGGGATGATAATG+GGG + tig0021860:1106-1125 Msa1394500:intron 25.0%
!! ATATGCTACTTAGATAAGAA+TGG - tig0021860:1327-1346 None:intergenic 25.0%
! TCTAAGTAGCATATGAAATT+TGG + tig0021860:1333-1352 Msa1394500:intron 25.0%
!!! CGATTTTAAAAATGAGATCA+AGG - tig0021860:1392-1411 None:intergenic 25.0%
! AATATCAAAAGAATGATGCA+TGG + tig0021860:1485-1504 Msa1394500:intron 25.0%
!!! GGTTGTAAGATTTTTTTTGT+TGG + tig0021860:1506-1525 Msa1394500:intron 25.0%
!! CTTCATATAAGAAATTTTGC+TGG - tig0021860:1699-1718 None:intergenic 25.0%
!!! AATCCAAGTAGATGTTTTTT+CGG + tig0021860:1780-1799 Msa1394500:exon 25.0%
! AATGATTTCTACCAAAATTC+TGG + tig0021860:1836-1855 Msa1394500:three_prime_UTR 25.0%
!! TAATAGGAAAACGCAAATTT+TGG + tig0021860:1911-1930 Msa1394500:three_prime_UTR 25.0%
! TTTGAACATACAAAATTCGT+TGG - tig0021860:1991-2010 None:intergenic 25.0%
! AACAAAAATCTGTATATCAC+TGG + tig0021860:631-650 Msa1394500:CDS 25.0%
! ACAAAAATCTGTATATCACT+GGG + tig0021860:632-651 Msa1394500:CDS 25.0%
! GGTTTAATTGTAAAAAAGAC+AGG + tig0021860:678-697 Msa1394500:intron 25.0%
! AAGTACATCAAGTTAAACAA+CGG + tig0021860:779-798 Msa1394500:CDS 25.0%
!! TTTATATATACCAGTCTTGT+TGG - tig0021860:975-994 None:intergenic 25.0%
! AGACTGGTATATATAAAAAG+TGG + tig0021860:978-997 Msa1394500:CDS 25.0%
! TGGTATATATAAAAAGTGGA+AGG + tig0021860:982-1001 Msa1394500:CDS 25.0%
!! CTTTAATTTAGGGATGATAA+TGG + tig0021860:1104-1123 Msa1394500:intron 25.0%
!! TTAATTTAGGGATGATAATG+GGG + tig0021860:1106-1125 Msa1394500:intron 25.0%
!! ATATGCTACTTAGATAAGAA+TGG - tig0021860:1327-1346 None:intergenic 25.0%
! TCTAAGTAGCATATGAAATT+TGG + tig0021860:1333-1352 Msa1394500:intron 25.0%
!!! CGATTTTAAAAATGAGATCA+AGG - tig0021860:1392-1411 None:intergenic 25.0%
! AATATCAAAAGAATGATGCA+TGG + tig0021860:1485-1504 Msa1394500:intron 25.0%
!!! GGTTGTAAGATTTTTTTTGT+TGG + tig0021860:1506-1525 Msa1394500:intron 25.0%
!! CTTCATATAAGAAATTTTGC+TGG - tig0021860:1699-1718 None:intergenic 25.0%
!!! AATCCAAGTAGATGTTTTTT+CGG + tig0021860:1780-1799 Msa1394500:exon 25.0%
! AATGATTTCTACCAAAATTC+TGG + tig0021860:1836-1855 Msa1394500:three_prime_UTR 25.0%
!! TAATAGGAAAACGCAAATTT+TGG + tig0021860:1911-1930 Msa1394500:three_prime_UTR 25.0%
! TTTGAACATACAAAATTCGT+TGG - tig0021860:1991-2010 None:intergenic 25.0%
GATATGTAATACGTACAGAT+TGG + tig0021860:560-579 Msa1394500:CDS 30.0%
ACTCCAAGATATCTCTTAAA+GGG + tig0021860:1014-1033 Msa1394500:CDS 30.0%
TTTGCATCTATGAATATCGT+GGG + tig0021860:1175-1194 Msa1394500:intron 30.0%
AAGAAACAAAAACATAGGCA+TGG + tig0021860:1266-1285 Msa1394500:intron 30.0%
!!! CTTACTGATTTTTGTAATGC+AGG + tig0021860:1551-1570 Msa1394500:intron 30.0%
! CCATATCTTTGATTTCTGAA+CGG - tig0021860:1646-1665 None:intergenic 30.0%
AGATATGGATCAAATTCGAA+AGG + tig0021860:1658-1677 Msa1394500:CDS 30.0%
CTTCAGAAGTTAATTAGTCA+TGG + tig0021860:1803-1822 Msa1394500:three_prime_UTR 30.0%
GAAGTTAATTAGTCATGGAA+AGG + tig0021860:1808-1827 Msa1394500:three_prime_UTR 30.0%
TCTGTATCTTCAAAAGAATG+AGG + tig0021860:1863-1882 Msa1394500:three_prime_UTR 30.0%
CTGTATCTTCAAAAGAATGA+GGG + tig0021860:1864-1883 Msa1394500:three_prime_UTR 30.0%
TGTATCTTCAAAAGAATGAG+GGG + tig0021860:1865-1884 Msa1394500:three_prime_UTR 30.0%
AAGTATGAAACCCAAGTAAT+AGG + tig0021860:1895-1914 Msa1394500:three_prime_UTR 30.0%
! TTTGCGTTTTCCTATTACTT+GGG - tig0021860:1908-1927 None:intergenic 30.0%
! ATTTGCGTTTTCCTATTACT+TGG - tig0021860:1909-1928 None:intergenic 30.0%
GATATGTAATACGTACAGAT+TGG + tig0021860:560-579 Msa1394500:CDS 30.0%
ACTCCAAGATATCTCTTAAA+GGG + tig0021860:1014-1033 Msa1394500:CDS 30.0%
TTTGCATCTATGAATATCGT+GGG + tig0021860:1175-1194 Msa1394500:intron 30.0%
AAGAAACAAAAACATAGGCA+TGG + tig0021860:1266-1285 Msa1394500:intron 30.0%
!!! CTTACTGATTTTTGTAATGC+AGG + tig0021860:1551-1570 Msa1394500:intron 30.0%
! CCATATCTTTGATTTCTGAA+CGG - tig0021860:1646-1665 None:intergenic 30.0%
AGATATGGATCAAATTCGAA+AGG + tig0021860:1658-1677 Msa1394500:CDS 30.0%
CTTCAGAAGTTAATTAGTCA+TGG + tig0021860:1803-1822 Msa1394500:three_prime_UTR 30.0%
GAAGTTAATTAGTCATGGAA+AGG + tig0021860:1808-1827 Msa1394500:three_prime_UTR 30.0%
TCTGTATCTTCAAAAGAATG+AGG + tig0021860:1863-1882 Msa1394500:three_prime_UTR 30.0%
CTGTATCTTCAAAAGAATGA+GGG + tig0021860:1864-1883 Msa1394500:three_prime_UTR 30.0%
TGTATCTTCAAAAGAATGAG+GGG + tig0021860:1865-1884 Msa1394500:three_prime_UTR 30.0%
AAGTATGAAACCCAAGTAAT+AGG + tig0021860:1895-1914 Msa1394500:three_prime_UTR 30.0%
! TTTGCGTTTTCCTATTACTT+GGG - tig0021860:1908-1927 None:intergenic 30.0%
! ATTTGCGTTTTCCTATTACT+TGG - tig0021860:1909-1928 None:intergenic 30.0%
ATCTGTATATCACTGGGATA+AGG + tig0021860:638-657 Msa1394500:CDS 35.0%
!! TATAAACCTTTTGCTGTCAG+AGG + tig0021860:750-769 Msa1394500:intron 35.0%
! GGAAAGGTATAGTATTCATG+AGG + tig0021860:821-840 Msa1394500:intron 35.0%
ATGTTATGTTCTACGGGTTT+AGG - tig0021860:898-917 None:intergenic 35.0%
CACTCCAAGATATCTCTTAA+AGG + tig0021860:1013-1032 Msa1394500:CDS 35.0%
! TGTCCCTTTAAGAGATATCT+TGG - tig0021860:1020-1039 None:intergenic 35.0%
AACATCCATGGATATAGATG+TGG - tig0021860:1157-1176 None:intergenic 35.0%
TTCATAGATGCAAACATCCA+TGG - tig0021860:1169-1188 None:intergenic 35.0%
GTTTGCATCTATGAATATCG+TGG + tig0021860:1174-1193 Msa1394500:intron 35.0%
CTATGAATATCGTGGGATTT+AGG + tig0021860:1182-1201 Msa1394500:intron 35.0%
GAAACATGACAAAGCAAATG+AGG - tig0021860:1415-1434 None:intergenic 35.0%
TTACATGCAAAACTAGTTCC+TGG - tig0021860:1446-1465 None:intergenic 35.0%
! GTTTTGCATGTAATATCTGC+TGG + tig0021860:1453-1472 Msa1394500:intron 35.0%
CCGTTCAGAAATCAAAGATA+TGG + tig0021860:1643-1662 Msa1394500:CDS 35.0%
AAGCCGAAAAAACATCTACT+TGG - tig0021860:1786-1805 None:intergenic 35.0%
! ATACAGATGCACCAGAATTT+TGG - tig0021860:1850-1869 None:intergenic 35.0%
ATCTGTATATCACTGGGATA+AGG + tig0021860:638-657 Msa1394500:CDS 35.0%
!! TATAAACCTTTTGCTGTCAG+AGG + tig0021860:750-769 Msa1394500:intron 35.0%
! GGAAAGGTATAGTATTCATG+AGG + tig0021860:821-840 Msa1394500:intron 35.0%
ATGTTATGTTCTACGGGTTT+AGG - tig0021860:898-917 None:intergenic 35.0%
CACTCCAAGATATCTCTTAA+AGG + tig0021860:1013-1032 Msa1394500:CDS 35.0%
! TGTCCCTTTAAGAGATATCT+TGG - tig0021860:1020-1039 None:intergenic 35.0%
AACATCCATGGATATAGATG+TGG - tig0021860:1157-1176 None:intergenic 35.0%
TTCATAGATGCAAACATCCA+TGG - tig0021860:1169-1188 None:intergenic 35.0%
GTTTGCATCTATGAATATCG+TGG + tig0021860:1174-1193 Msa1394500:intron 35.0%
CTATGAATATCGTGGGATTT+AGG + tig0021860:1182-1201 Msa1394500:intron 35.0%
GAAACATGACAAAGCAAATG+AGG - tig0021860:1415-1434 None:intergenic 35.0%
TTACATGCAAAACTAGTTCC+TGG - tig0021860:1446-1465 None:intergenic 35.0%
! GTTTTGCATGTAATATCTGC+TGG + tig0021860:1453-1472 Msa1394500:intron 35.0%
CCGTTCAGAAATCAAAGATA+TGG + tig0021860:1643-1662 Msa1394500:CDS 35.0%
AAGCCGAAAAAACATCTACT+TGG - tig0021860:1786-1805 None:intergenic 35.0%
! ATACAGATGCACCAGAATTT+TGG - tig0021860:1850-1869 None:intergenic 35.0%
TTTACTCCTCTGACAGCAAA+AGG - tig0021860:759-778 None:intergenic 40.0%
GTACAGATAAAGACAGAGAG+TGG + tig0021860:935-954 Msa1394500:intron 40.0%
AGAGAGTGGTGCAAAAACAA+AGG + tig0021860:949-968 Msa1394500:CDS 40.0%
AAAACAAAGGCCAACAAGAC+TGG + tig0021860:962-981 Msa1394500:CDS 40.0%
CAGGAATCAAGAAGTTCAAG+AGG + tig0021860:1058-1077 Msa1394500:CDS 40.0%
!! ATTTAGGGATGATAATGGGG+TGG + tig0021860:1109-1128 Msa1394500:intron 40.0%
!! TTTAGGGATGATAATGGGGT+GGG + tig0021860:1110-1129 Msa1394500:intron 40.0%
ATATAGATGTGGATGGATGC+GGG - tig0021860:1146-1165 None:intergenic 40.0%
GATATAGATGTGGATGGATG+CGG - tig0021860:1147-1166 None:intergenic 40.0%
TCCATCCACATCTATATCCA+TGG + tig0021860:1149-1168 Msa1394500:intron 40.0%
TCCATGGATATAGATGTGGA+TGG - tig0021860:1153-1172 None:intergenic 40.0%
AGAATGGTTGCTAAACAGAG+CGG - tig0021860:1311-1330 None:intergenic 40.0%
ATGCAAAACTAGTTCCTGGA+TGG - tig0021860:1442-1461 None:intergenic 40.0%
TGCATGTAATATCTGCTGGT+TGG + tig0021860:1457-1476 Msa1394500:intron 40.0%
! TGTAATATCTGCTGGTTGGT+TGG + tig0021860:1461-1480 Msa1394500:intron 40.0%
TGTAATGCAGGATCTTACCA+AGG + tig0021860:1563-1582 Msa1394500:intron 40.0%
TGGATCAAATTCGAAAGGAG+AGG + tig0021860:1663-1682 Msa1394500:CDS 40.0%
GTCGCCAAAGGGTAAAAAAT+CGG + tig0021860:1724-1743 Msa1394500:CDS 40.0%
TCGCCAAAGGGTAAAAAATC+GGG + tig0021860:1725-1744 Msa1394500:CDS 40.0%
!!! TTGCCCGATTTTTTACCCTT+TGG - tig0021860:1731-1750 None:intergenic 40.0%
TTTACTCCTCTGACAGCAAA+AGG - tig0021860:759-778 None:intergenic 40.0%
GTACAGATAAAGACAGAGAG+TGG + tig0021860:935-954 Msa1394500:intron 40.0%
AGAGAGTGGTGCAAAAACAA+AGG + tig0021860:949-968 Msa1394500:CDS 40.0%
AAAACAAAGGCCAACAAGAC+TGG + tig0021860:962-981 Msa1394500:CDS 40.0%
CAGGAATCAAGAAGTTCAAG+AGG + tig0021860:1058-1077 Msa1394500:CDS 40.0%
!! ATTTAGGGATGATAATGGGG+TGG + tig0021860:1109-1128 Msa1394500:intron 40.0%
!! TTTAGGGATGATAATGGGGT+GGG + tig0021860:1110-1129 Msa1394500:intron 40.0%
ATATAGATGTGGATGGATGC+GGG - tig0021860:1146-1165 None:intergenic 40.0%
GATATAGATGTGGATGGATG+CGG - tig0021860:1147-1166 None:intergenic 40.0%
TCCATCCACATCTATATCCA+TGG + tig0021860:1149-1168 Msa1394500:intron 40.0%
TCCATGGATATAGATGTGGA+TGG - tig0021860:1153-1172 None:intergenic 40.0%
AGAATGGTTGCTAAACAGAG+CGG - tig0021860:1311-1330 None:intergenic 40.0%
ATGCAAAACTAGTTCCTGGA+TGG - tig0021860:1442-1461 None:intergenic 40.0%
TGCATGTAATATCTGCTGGT+TGG + tig0021860:1457-1476 Msa1394500:intron 40.0%
! TGTAATATCTGCTGGTTGGT+TGG + tig0021860:1461-1480 Msa1394500:intron 40.0%
TGTAATGCAGGATCTTACCA+AGG + tig0021860:1563-1582 Msa1394500:intron 40.0%
TGGATCAAATTCGAAAGGAG+AGG + tig0021860:1663-1682 Msa1394500:CDS 40.0%
GTCGCCAAAGGGTAAAAAAT+CGG + tig0021860:1724-1743 Msa1394500:CDS 40.0%
TCGCCAAAGGGTAAAAAATC+GGG + tig0021860:1725-1744 Msa1394500:CDS 40.0%
!!! TTGCCCGATTTTTTACCCTT+TGG - tig0021860:1731-1750 None:intergenic 40.0%
GATGATGCTGTCCTAGATCT+AGG + tig0021860:582-601 Msa1394500:CDS 45.0%
CATCATCTGCACCTAGATCT+AGG - tig0021860:596-615 None:intergenic 45.0%
CTAGATCTAGGTGCAGATGA+TGG + tig0021860:594-613 Msa1394500:CDS 45.0%
AAGGTAATGCTGAACAGTCG+TGG + tig0021860:657-676 Msa1394500:intron 45.0%
CCTTTCCATTTGCAGCAACA+CGG - tig0021860:808-827 None:intergenic 45.0%
!! CTTAAAGGGACAAGTGCTGA+TGG + tig0021860:1028-1047 Msa1394500:CDS 45.0%
TATAGATGTGGATGGATGCG+GGG - tig0021860:1145-1164 None:intergenic 45.0%
TATCGTGGGATTTAGGCTCT+AGG + tig0021860:1189-1208 Msa1394500:intron 45.0%
CAAAACTAGTTCCTGGATGG+CGG - tig0021860:1439-1458 None:intergenic 45.0%
AATGCAGGATCTTACCAAGG+AGG + tig0021860:1566-1585 Msa1394500:intron 45.0%
TGTAATTCCTACCACCTCCT+TGG - tig0021860:1583-1602 None:intergenic 45.0%
GGAGGTGGTAGGAATTACAA+AGG + tig0021860:1584-1603 Msa1394500:CDS 45.0%
GGTGGTAGGAATTACAAAGG+CGG + tig0021860:1587-1606 Msa1394500:CDS 45.0%
TCTGAACGGACATGAGCATT+GGG - tig0021860:1632-1651 None:intergenic 45.0%
TTCTGAACGGACATGAGCAT+TGG - tig0021860:1633-1652 None:intergenic 45.0%
TATGAAGAGCAAGTCGCCAA+AGG + tig0021860:1712-1731 Msa1394500:CDS 45.0%
ATGAAGAGCAAGTCGCCAAA+GGG + tig0021860:1713-1732 Msa1394500:CDS 45.0%
GGTAAAAAATCGGGCAAACC+TGG + tig0021860:1734-1753 Msa1394500:CDS 45.0%
TTATTTCCTCCCTTTCTGCC+AGG - tig0021860:1755-1774 None:intergenic 45.0%
GATGATGCTGTCCTAGATCT+AGG + tig0021860:582-601 Msa1394500:CDS 45.0%
CATCATCTGCACCTAGATCT+AGG - tig0021860:596-615 None:intergenic 45.0%
CTAGATCTAGGTGCAGATGA+TGG + tig0021860:594-613 Msa1394500:CDS 45.0%
AAGGTAATGCTGAACAGTCG+TGG + tig0021860:657-676 Msa1394500:intron 45.0%
CCTTTCCATTTGCAGCAACA+CGG - tig0021860:808-827 None:intergenic 45.0%
!! CTTAAAGGGACAAGTGCTGA+TGG + tig0021860:1028-1047 Msa1394500:CDS 45.0%
TATAGATGTGGATGGATGCG+GGG - tig0021860:1145-1164 None:intergenic 45.0%
TATCGTGGGATTTAGGCTCT+AGG + tig0021860:1189-1208 Msa1394500:intron 45.0%
CAAAACTAGTTCCTGGATGG+CGG - tig0021860:1439-1458 None:intergenic 45.0%
AATGCAGGATCTTACCAAGG+AGG + tig0021860:1566-1585 Msa1394500:intron 45.0%
TGTAATTCCTACCACCTCCT+TGG - tig0021860:1583-1602 None:intergenic 45.0%
GGAGGTGGTAGGAATTACAA+AGG + tig0021860:1584-1603 Msa1394500:CDS 45.0%
GGTGGTAGGAATTACAAAGG+CGG + tig0021860:1587-1606 Msa1394500:CDS 45.0%
TCTGAACGGACATGAGCATT+GGG - tig0021860:1632-1651 None:intergenic 45.0%
TTCTGAACGGACATGAGCAT+TGG - tig0021860:1633-1652 None:intergenic 45.0%
TATGAAGAGCAAGTCGCCAA+AGG + tig0021860:1712-1731 Msa1394500:CDS 45.0%
ATGAAGAGCAAGTCGCCAAA+GGG + tig0021860:1713-1732 Msa1394500:CDS 45.0%
GGTAAAAAATCGGGCAAACC+TGG + tig0021860:1734-1753 Msa1394500:CDS 45.0%
TTATTTCCTCCCTTTCTGCC+AGG - tig0021860:1755-1774 None:intergenic 45.0%
! CCGTGTTGCTGCAAATGGAA+AGG + tig0021860:805-824 Msa1394500:CDS 50.0%
!! AAGTGCTGATGGTGATGCTC+AGG + tig0021860:1039-1058 Msa1394500:CDS 50.0%
ATAGATGTGGATGGATGCGG+GGG - tig0021860:1144-1163 None:intergenic 50.0%
GATCTTACCAAGGAGGTGGT+AGG + tig0021860:1573-1592 Msa1394500:CDS 50.0%
TCAAGGGGCTGCTATGTACA+AGG - tig0021860:2057-2076 None:intergenic 50.0%
! CCGTGTTGCTGCAAATGGAA+AGG + tig0021860:805-824 Msa1394500:CDS 50.0%
!! AAGTGCTGATGGTGATGCTC+AGG + tig0021860:1039-1058 Msa1394500:CDS 50.0%
ATAGATGTGGATGGATGCGG+GGG - tig0021860:1144-1163 None:intergenic 50.0%
GATCTTACCAAGGAGGTGGT+AGG + tig0021860:1573-1592 Msa1394500:CDS 50.0%
TCAAGGGGCTGCTATGTACA+AGG - tig0021860:2057-2076 None:intergenic 50.0%
! CTAGGTGCAGATGATGGTGC+TGG + tig0021860:600-619 Msa1394500:CDS 55.0%
! GGTGACCGTGTTGCTGCAAA+TGG + tig0021860:800-819 Msa1394500:CDS 55.0%
GTCATGTTTCTCCGCCATCC+AGG + tig0021860:1425-1444 Msa1394500:intron 55.0%
GCAGGATCTTACCAAGGAGG+TGG + tig0021860:1569-1588 Msa1394500:intron 55.0%
ATCGGGCAAACCTGGCAGAA+AGG + tig0021860:1742-1761 Msa1394500:CDS 55.0%
TCGGGCAAACCTGGCAGAAA+GGG + tig0021860:1743-1762 Msa1394500:CDS 55.0%
! CTAGGTGCAGATGATGGTGC+TGG + tig0021860:600-619 Msa1394500:CDS 55.0%
! GGTGACCGTGTTGCTGCAAA+TGG + tig0021860:800-819 Msa1394500:CDS 55.0%
GTCATGTTTCTCCGCCATCC+AGG + tig0021860:1425-1444 Msa1394500:intron 55.0%
GCAGGATCTTACCAAGGAGG+TGG + tig0021860:1569-1588 Msa1394500:intron 55.0%
ATCGGGCAAACCTGGCAGAA+AGG + tig0021860:1742-1761 Msa1394500:CDS 55.0%
TCGGGCAAACCTGGCAGAAA+GGG + tig0021860:1743-1762 Msa1394500:CDS 55.0%
GGCAAACCTGGCAGAAAGGG+AGG + tig0021860:1746-1765 Msa1394500:CDS 60.0%
GGCAAACCTGGCAGAAAGGG+AGG + tig0021860:1746-1765 Msa1394500:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0021860 gene 555 2090 555 ID=Msa1394500;Name=Msa1394500
tig0021860 mRNA 555 2090 555 ID=Msa1394500-mRNA-1;Parent=Msa1394500;Name=Msa1394500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=3|1|1|1|1|1|4|300|171
tig0021860 exon 555 659 555 ID=Msa1394500-mRNA-1:exon:14382;Parent=Msa1394500-mRNA-1
tig0021860 exon 770 826 770 ID=Msa1394500-mRNA-1:exon:14383;Parent=Msa1394500-mRNA-1
tig0021860 exon 941 1079 941 ID=Msa1394500-mRNA-1:exon:14384;Parent=Msa1394500-mRNA-1
tig0021860 exon 1573 2090 1573 ID=Msa1394500-mRNA-1:exon:14385;Parent=Msa1394500-mRNA-1
tig0021860 five_prime_UTR 555 557 555 ID=Msa1394500-mRNA-1:five_prime_utr;Parent=Msa1394500-mRNA-1
tig0021860 CDS 558 659 558 ID=Msa1394500-mRNA-1:cds;Parent=Msa1394500-mRNA-1
tig0021860 CDS 770 826 770 ID=Msa1394500-mRNA-1:cds;Parent=Msa1394500-mRNA-1
tig0021860 CDS 941 1079 941 ID=Msa1394500-mRNA-1:cds;Parent=Msa1394500-mRNA-1
tig0021860 CDS 1573 1790 1573 ID=Msa1394500-mRNA-1:cds;Parent=Msa1394500-mRNA-1
tig0021860 three_prime_UTR 1791 2090 1791 ID=Msa1394500-mRNA-1:three_prime_utr;Parent=Msa1394500-mRNA-1
Gene Sequence

>Msa1394500

ATGATATGTAATACGTACAGATTGGATGATGCTGTCCTAGATCTAGGTGCAGATGATGGTGCTGGCATTAAGAAACAAAAATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAACGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCAACAAGACTGGTATATATAAAAAGTGGAAGGAACGCTCGCACTCCAAGATATCTCTTAAAGGGACAAGTGCTGATGGTGATGCTCAGGAATCAAGAAGTTCAAGAGGATCTTACCAAGGAGGTGGTAGGAATTACAAAGGCGGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTCCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAGAAAGCCAGCAAAATTTCTTATATGAAGAGCAAGTCGCCAAAGGGTAAAAAATCGGGCAAACCTGGCAGAAAGGGAGGAAATAAAAGAAAATCCAAGTAG

Protein sequence

>Msa1394500

MICNTYRLDDAVLDLGADDGAGIKKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKERSHSKISLKGTSADGDAQESRSSRGSYQGGGRNYKGGKKQHSMPNAHVRSEIKDMDQIRKERQKKASKISYMKSKSPKGKKSGKPGRKGGNKRKSK*