AlfalfaGEDB | Msa1051330

M. sativa cultivar zhongmu-4 / Msa1051330

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051330	XP_003621609.1	95.853	627	25	1	1	627	1	626	0.0	1162

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051330	sp\|Q8L7E5\|WIT1_ARATH	38.612	663	349	12	10	616	37	697	8.60e-116	364

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051330	G7KS23	95.853	627	25	1	1	627	1	626	0.0	1162

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1051330	0.819163	1.341817e-52	-8.615850e-47
Msa0003220	Msa1051330	0.805574	1.249763e-49	-8.615850e-47
Msa0003700	Msa1051330	0.809122	2.212019e-50	-8.615850e-47
Msa0003720	Msa1051330	0.816646	4.967793e-52	-8.615850e-47
Msa0004540	Msa1051330	0.805671	1.192554e-49	-8.615850e-47
Msa0008090	Msa1051330	0.823005	1.748539e-53	-8.615850e-47
Msa0010770	Msa1051330	0.801587	8.392951e-49	-8.615850e-47
Msa0011930	Msa1051330	0.802226	6.202599e-49	-8.615850e-47
Msa0012940	Msa1051330	0.800076	1.707328e-48	-8.615850e-47
Msa0014570	Msa1051330	0.810644	1.040248e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051330	MtrunA17_Chr7g0220541	95.853	627	25	1	1	627	1	626	0.0	1162
Msa1051330	MtrunA17_Chr3g0123611	50.534	562	224	9	7	523	17	569	4.15e-145	433
Msa1051330	MtrunA17_Chr6g0470981	38.859	561	309	9	9	544	15	566	1.35e-91	296

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051330	AT5G11390.1	38.612	663	349	12	10	616	37	697	8.74e-117	364
Msa1051330	AT1G68910.1	32.958	622	369	12	24	617	26	627	1.95e-79	264
Msa1051330	AT1G68910.2	34.574	564	326	10	24	564	26	569	2.65e-78	259
Msa1051330	AT1G68910.3	34.574	564	326	10	24	564	26	569	2.65e-78	259

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Find 118 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCAAGACACTACTGTT+GGG	0.581737	7_2:+18097832	Msa1051330:three_prime_UTR
AACTAATGAAGAACTCAACA+AGG	0.662178	7_2:+18094523	Msa1051330:CDS
AACTTTGGAAGGTGAATTAG+AGG	0.372115	7_2:+18092969	Msa1051330:CDS
AAGTTTCTTGAGGAGTAGAT+TGG	0.388441	7_2:+18094820	Msa1051330:CDS
AAGTTTGTTCTCGCTTGCTA+AGG	0.523128	7_2:-18095944	None:intergenic
AATACCGGTGATGTTGATGT+TGG	0.597119	7_2:+18092844	Msa1051330:CDS
AATCTCGTAAAACTGCTCCT+CGG	0.624682	7_2:-18093184	None:intergenic
AATGCGCGTGAGATCCTGAA+GGG	0.678003	7_2:+18094113	Msa1051330:CDS
ACAACAGGGAATGTTGAAGA+CGG	0.671738	7_2:+18093837	Msa1051330:intron
ACAAGAAACTGAATGCCAGT+TGG	0.639494	7_2:+18094340	Msa1051330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATTTGGAAACTTTGGA+AGG	+	chr7_2:18092958-18092977	Msa1051330:CDS	30.0%
GACTTTGTCTTCTTATAAGA+AGG	+	chr7_2:18093233-18093252	Msa1051330:CDS	30.0%
TCTTATAAGAAGGAAGAGAA+TGG	+	chr7_2:18093243-18093262	Msa1051330:CDS	30.0%
GAGTTCCATTAATGCAAAAT+AGG	-	chr7_2:18093467-18093486	None:intergenic	30.0%
TATGAAGTCACACATATGAT+TGG	-	chr7_2:18093650-18093669	None:intergenic	30.0%
AGTTAGAACATTAACATTGC+TGG	-	chr7_2:18093699-18093718	None:intergenic	30.0%
TTGAAGAAAAGCTAAATCTG+AGG	+	chr7_2:18094012-18094031	Msa1051330:CDS	30.0%
ATACTGTTGCTGATATTCAT+TGG	-	chr7_2:18094384-18094403	None:intergenic	30.0%
AACTAATGAAGAACTCAACA+AGG	+	chr7_2:18094523-18094542	Msa1051330:CDS	30.0%
GTGTTACACAATTGAAGATA+TGG	+	chr7_2:18094682-18094701	Msa1051330:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	18092761	18098271	18092761	ID=Msa1051330;Name=Msa1051330
chr7_2	mRNA	18092761	18098271	18092761	ID=Msa1051330-mRNA-1;Parent=Msa1051330;Name=Msa1051330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=59\|1\|1\|1\|1\|1\|4\|466\|627
chr7_2	exon	18092761	18093264	18092761	ID=Msa1051330-mRNA-1:exon:4082;Parent=Msa1051330-mRNA-1
chr7_2	exon	18093844	18094976	18093844	ID=Msa1051330-mRNA-1:exon:4083;Parent=Msa1051330-mRNA-1
chr7_2	exon	18095937	18096044	18095937	ID=Msa1051330-mRNA-1:exon:4084;Parent=Msa1051330-mRNA-1
chr7_2	exon	18097608	18098271	18097608	ID=Msa1051330-mRNA-1:exon:4085;Parent=Msa1051330-mRNA-1
chr7_2	five_prime_UTR	18092761	18092819	18092761	ID=Msa1051330-mRNA-1:five_prime_utr;Parent=Msa1051330-mRNA-1
chr7_2	CDS	18092820	18093264	18092820	ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2	CDS	18093844	18094976	18093844	ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2	CDS	18095937	18096044	18095937	ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2	CDS	18097608	18097805	18097608	ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2	three_prime_UTR	18097806	18098271	18097806	ID=Msa1051330-mRNA-1:three_prime_utr;Parent=Msa1051330-mRNA-1

Gene Sequence

>Msa1051330

ATGGAAACTCAAAGTGTTGAAGATAATACCGGTGATGTTGATGTTGGAGGTGTTTCAGATAATGGAGAAGTTATTGTGGATTTTGAAATGAGTGTGGTATATTTCTCTGAGAAAGTTTCAAATTTGAGTATTTTTATGATGAATTTGGAAACTTTGGAAGGTGAATTAGAGGGTTTAGTTTGTGACGAAGAAAACATCGATATGGATTGTGTTTTAAAGGGTTTTGAGTTTGATTTGTTATGTGGGGTGCTGGGTTCTGAGGTTAGAGATTTGGGTTTGTTTTTGGATACACTTCATGCTGAGATTTCTGGTTCTAGAGAGAGAGATTCTTCTTTGAACGATTGGCAAGAGAGGTTGGTTGAATCCGAGGAGCAGTTTTACGAGATTAAGAAACAATCTTTTAGTTTTGAAAGGACTTTGTCTTCTTATAAGAAGGAAGAGAATGGGAATGTTGAAGACGGTGGAAATGTCCAAGAGGATGATCAAACTTCGAATGTAAACAACATGATGAACATGCAAACGACTGAGCAACATAGAAACATTTTGAGGATGCTTGAGAAATCTTTGGCAAATGAAATAGATCTCGAGAAGAATTTCAACGACTCGAAGAAAATTGAAGAAAAGCTAAATCTGAGGATCCTTTCTTTAGAAGACGAGTTAATTCAAACAGAGGAAGAAGCAATCGAAGTTTGGGAAAGATTGTTTGAGGCAGACAATGCGCGTGAGATCCTGAAGGGAATTTCAAATGAAGTGTTGGCTAAACTCAAGCTTTCTCAGTTCAATTTGGTTGGTTTAAGAAAAAGTGAATCCGAGCTTAGAGATAAGCTGGAAACTTCTATAGAGCAATTGAAAAATAGAGACGTTAATTTGGAAAAGATCGAAAGCAGCACAGCTGAAGCAGTTAATTTAGGCGACAAAGTGTGCTCACTTGAGAAGCAGCTACAAGAAACTGAATGCCAGTTGGTGAATGTGAAAGTCTCTGCCAATGAATATCAGCAACAGTATAATGTTGTGTGTTCTCAAGTTAGAGACATGGATAACCTTATCGTAGAATTGAAAGAAAATGCAAAAAATGCAGAAAATCGAGCTAATGCTGCAGAAGTTCAGTGTAAAAAATTGACGGAAACTAATGAAGAACTCAACAAGGAGCTGACTCTTTTAAAAGACTGTGGTATCACATCTGAGAGTGTAGAGTTACTTGAAAGGCAGCTAAAGGAGACTGATTTACAGCTGCAGCAGGCAGTAGCGTCTGCTGGAGCTAGTGAAGAGAAGCAAAAGATGTTGTGTTACACAATTGAAGATATGGAACATGTGATAAAGGATCTTAAGTCAAAGGTTTCTAAAGCCGAGAGTCTAGCTGACAGTGCAGAGGACAAGTGTATCATATTATCTGAATCTAATGCTGATTTAAACGAGGAAGTAAGTTTCTTGAGGAGTAGATTGGAATGCTTGGAGGGATCACTGCAGAAAGCGGAGGAAGCGAAAATGACAACTGCAAAGAATATTGGAAAGCAAACCAAAGTTTTTAAAAGTTTGCTGACACAGTTGGCTTTGGAGAGAGAGCGTCTTAATAAGAAGCTATCCTCCTTAGCAAGCGAGAACAAACTTTTGGCAGTGAAACTGAAGCAAACATATAAGAAGGGTTCTTCTAAAGAAGTTAGTGCGACTTTGTCTTCTGAGCATGAGGGGAACAAGACATGGAAAAATTCATCTGCAAATGATAATGAAGTAAAGTCAGATTCAATACCAGATGTTGGGACTGTGAGAAGAATAGATGCAGGAGTTCTTACTTTTAAGCACTTATTGATATCATTGTTTGTCTTACTCCTTTCAGTTGTGACCTTTCTGTATTTCAAGGACTTGAATGTTGATGTCAGTCTATGA

Protein sequence

>Msa1051330

METQSVEDNTGDVDVGGVSDNGEVIVDFEMSVVYFSEKVSNLSIFMMNLETLEGELEGLVCDEENIDMDCVLKGFEFDLLCGVLGSEVRDLGLFLDTLHAEISGSRERDSSLNDWQERLVESEEQFYEIKKQSFSFERTLSSYKKEENGNVEDGGNVQEDDQTSNVNNMMNMQTTEQHRNILRMLEKSLANEIDLEKNFNDSKKIEEKLNLRILSLEDELIQTEEEAIEVWERLFEADNAREILKGISNEVLAKLKLSQFNLVGLRKSESELRDKLETSIEQLKNRDVNLEKIESSTAEAVNLGDKVCSLEKQLQETECQLVNVKVSANEYQQQYNVVCSQVRDMDNLIVELKENAKNAENRANAAEVQCKKLTETNEELNKELTLLKDCGITSESVELLERQLKETDLQLQQAVASAGASEEKQKMLCYTIEDMEHVIKDLKSKVSKAESLADSAEDKCIILSESNADLNEEVSFLRSRLECLEGSLQKAEEAKMTTAKNIGKQTKVFKSLLTQLALERERLNKKLSSLASENKLLAVKLKQTYKKGSSKEVSATLSSEHEGNKTWKNSSANDNEVKSDSIPDVGTVRRIDAGVLTFKHLLISLFVLLLSVVTFLYFKDLNVDVSL*