AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1051330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051330 MtrunA17_Chr7g0220541 95.853 627 25 1 1 627 1 626 0.0 1162
Msa1051330 MtrunA17_Chr3g0123611 50.534 562 224 9 7 523 17 569 4.15e-145 433
Msa1051330 MtrunA17_Chr6g0470981 38.859 561 309 9 9 544 15 566 1.35e-91 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051330 AT5G11390.1 38.612 663 349 12 10 616 37 697 8.74e-117 364
Msa1051330 AT1G68910.1 32.958 622 369 12 24 617 26 627 1.95e-79 264
Msa1051330 AT1G68910.2 34.574 564 326 10 24 564 26 569 2.65e-78 259
Msa1051330 AT1G68910.3 34.574 564 326 10 24 564 26 569 2.65e-78 259

Find 118 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTTCATGCTGAGATTTC+TGG 0.165736 7_2:+18093108 Msa1051330:CDS
CAAGCTTTCTCAGTTCAATT+TGG 0.215388 7_2:+18094163 Msa1051330:CDS
GGTTCTGAGGTTAGAGATTT+GGG 0.265934 7_2:+18093072 Msa1051330:CDS
GGGTTCTGAGGTTAGAGATT+TGG 0.291296 7_2:+18093071 Msa1051330:CDS
AGGAAGAAGCAATCGAAGTT+TGG 0.300071 7_2:+18094069 Msa1051330:CDS
TGATTTGTTATGTGGGGTGC+TGG 0.301024 7_2:+18093050 Msa1051330:CDS
ATGACAACTGCAAAGAATAT+TGG 0.308994 7_2:+18094884 Msa1051330:CDS
ACAGCTGAAGCAGTTAATTT+AGG 0.314252 7_2:+18094287 Msa1051330:CDS
TGACGAAGAAAACATCGATA+TGG 0.328251 7_2:+18093002 Msa1051330:CDS
TATGATGAATTTGGAAACTT+TGG 0.334665 7_2:+18092954 Msa1051330:CDS
GAGGATGCTTGAGAAATCTT+TGG 0.339008 7_2:+18093944 Msa1051330:CDS
GTTGGAGGTGTTTCAGATAA+TGG 0.340110 7_2:+18092862 Msa1051330:CDS
CTTCATTTGAAATTCCCTTC+AGG 0.351204 7_2:-18094127 None:intergenic
CAGCAGGCAGTAGCGTCTGC+TGG 0.352082 7_2:+18094632 Msa1051330:CDS
TTTGAGTTTGATTTGTTATG+TGG 0.355398 7_2:+18093042 Msa1051330:CDS
TTTGCTGACACAGTTGGCTT+TGG 0.366680 7_2:+18094931 Msa1051330:CDS
TGTGACCTTTCTGTATTTCA+AGG 0.370375 7_2:+18097757 Msa1051330:CDS
AACTTTGGAAGGTGAATTAG+AGG 0.372115 7_2:+18092969 Msa1051330:CDS
AGCAAGCGAGAACAAACTTT+TGG 0.375212 7_2:+18095948 Msa1051330:CDS
GTGTTACACAATTGAAGATA+TGG 0.376803 7_2:+18094682 Msa1051330:CDS
TTGAGTTTGATTTGTTATGT+GGG 0.386095 7_2:+18093043 Msa1051330:CDS
AAGTTTCTTGAGGAGTAGAT+TGG 0.388441 7_2:+18094820 Msa1051330:CDS
AGACACTACTGTTGGGATCT+TGG 0.388665 7_2:+18097839 Msa1051330:three_prime_UTR
TTTCTTTCAATTCTACGATA+AGG 0.399271 7_2:-18094439 None:intergenic
TGAATCTTACAATTGCAGTA+TGG 0.399302 7_2:+18098109 Msa1051330:three_prime_UTR
GAGATTCTTCTTTGAACGAT+TGG 0.400387 7_2:+18093142 Msa1051330:CDS
GGAAGAAGCAATCGAAGTTT+GGG 0.409580 7_2:+18094070 Msa1051330:CDS
CTGTAGAGGATCCCAGGTTC+GGG 0.413179 7_2:+18098140 Msa1051330:three_prime_UTR
ATACTGTTGCTGATATTCAT+TGG 0.419288 7_2:-18094381 None:intergenic
AGATATGGAACATGTGATAA+AGG 0.420057 7_2:+18094697 Msa1051330:CDS
TCGAAGTTTGATCATCCTCT+TGG 0.428130 7_2:-18093869 None:intergenic
CTTTCTCAGTTCAATTTGGT+TGG 0.429559 7_2:+18094167 Msa1051330:CDS
GCTGTAGAGGATCCCAGGTT+CGG 0.433892 7_2:+18098139 Msa1051330:three_prime_UTR
GACTTTGTCTTCTTATAAGA+AGG 0.441599 7_2:+18093233 Msa1051330:CDS
TTGTAAGATTCAAGTAATCA+TGG 0.444218 7_2:-18098098 None:intergenic
CTTCTCACAGTCCCAACATC+TGG 0.449927 7_2:-18097668 None:intergenic
TATCATCTATCTCCCGAACC+TGG 0.450196 7_2:-18098152 None:intergenic
CTGTAGAGGATCCCAGGTCT+TGG 0.460024 7_2:+18097961 Msa1051330:three_prime_UTR
GGGAATTTCAAATGAAGTGT+TGG 0.466188 7_2:+18094133 Msa1051330:CDS
TTCCAGCTTATCTCTAAGCT+CGG 0.467512 7_2:-18094207 None:intergenic
TTGGCAGGGACTTGCAGAAT+GGG 0.469681 7_2:+18097858 Msa1051330:three_prime_UTR
AGACTTTCACATTCACCAAC+TGG 0.472930 7_2:-18094355 None:intergenic
ACTGAAGCAAACATATAAGA+AGG 0.478500 7_2:+18095978 Msa1051330:CDS
TCTTGGAGATAGATTGTACT+AGG 0.479701 7_2:+18097978 Msa1051330:three_prime_UTR
ATCACCATACTGCACTTGTA+AGG 0.488815 7_2:-18097934 None:intergenic
ATCCGAGCTTAGAGATAAGC+TGG 0.490624 7_2:+18094205 Msa1051330:CDS
TACAAGGACAATGACATTGT+AGG 0.493849 7_2:+18098181 Msa1051330:three_prime_UTR
TTAACTCGTCTTCTAAAGAA+AGG 0.496891 7_2:-18094037 None:intergenic
GGGACTTGCAGAATGGGAAA+TGG 0.497912 7_2:+18097864 Msa1051330:three_prime_UTR
GATTTGTTATGTGGGGTGCT+GGG 0.499035 7_2:+18093051 Msa1051330:CDS
CAGATTCAATACCAGATGTT+GGG 0.500850 7_2:+18097657 Msa1051330:CDS
ACTACTGTTGGGATCTTGGC+AGG 0.504147 7_2:+18097843 Msa1051330:three_prime_UTR
GACTGATTTACAGCTGCAGC+AGG 0.504375 7_2:+18094616 Msa1051330:CDS
ATGTGGGGTGCTGGGTTCTG+AGG 0.507959 7_2:+18093059 Msa1051330:CDS
CTGCAGCTGTAGAGGATCCC+AGG 0.510548 7_2:+18098134 Msa1051330:three_prime_UTR
GAACGATTGGCAAGAGAGGT+TGG 0.512420 7_2:+18093155 Msa1051330:CDS
GTTACTTGAAAGGCAGCTAA+AGG 0.514392 7_2:+18094592 Msa1051330:CDS
CTTGGCAGGGACTTGCAGAA+TGG 0.514670 7_2:+18097857 Msa1051330:three_prime_UTR
GAGAGAGCGTCTTAATAAGA+AGG 0.518789 7_2:+18094955 Msa1051330:CDS
GAGTAGATTGGAATGCTTGG+AGG 0.519165 7_2:+18094832 Msa1051330:CDS
TCAGATTCAATACCAGATGT+TGG 0.521726 7_2:+18097656 Msa1051330:CDS
AAGTTTGTTCTCGCTTGCTA+AGG 0.523128 7_2:-18095944 None:intergenic
TTTGTTCTCGCTTGCTAAGG+AGG 0.527329 7_2:-18095941 None:intergenic
GATAAAGGATCTTAAGTCAA+AGG 0.527438 7_2:+18094712 Msa1051330:CDS
TAAAAGTTTGCTGACACAGT+TGG 0.530211 7_2:+18094925 Msa1051330:CDS
CTTTGAACGATTGGCAAGAG+AGG 0.530964 7_2:+18093151 Msa1051330:CDS
CAAAGTGTTGAAGATAATAC+CGG 0.537217 7_2:+18092829 Msa1051330:CDS
GAGGAGTAGATTGGAATGCT+TGG 0.538497 7_2:+18094829 Msa1051330:CDS
AGATAATGGAGAAGTTATTG+TGG 0.538820 7_2:+18092876 Msa1051330:CDS
GAATCCTTACAAGTGCAGTA+TGG 0.542027 7_2:+18097930 Msa1051330:three_prime_UTR
ATGCAGCTGTAGAGGATCCC+AGG 0.542350 7_2:+18097955 Msa1051330:three_prime_UTR
GAAAGGCAAGACACTACTGT+TGG 0.543333 7_2:+18097831 Msa1051330:three_prime_UTR
ACGAGGAAGTAAGTTTCTTG+AGG 0.550455 7_2:+18094810 Msa1051330:CDS
TACAATCTATCTCCAAGACC+TGG 0.552241 7_2:-18097973 None:intergenic
CAAGTCCTTGAAATACAGAA+AGG 0.560321 7_2:-18097762 None:intergenic
AGTTTGGGAAAGATTGTTTG+AGG 0.560777 7_2:+18094085 Msa1051330:CDS
GACTTTGTCTTCTGAGCATG+AGG 0.562788 7_2:+18096023 Msa1051330:CDS
GGGAAATGGCATCATATGAA+AGG 0.567277 7_2:+18097878 Msa1051330:three_prime_UTR
ATGAATTTGGAAACTTTGGA+AGG 0.568364 7_2:+18092958 Msa1051330:CDS
TGAGTTTGATTTGTTATGTG+GGG 0.573199 7_2:+18093044 Msa1051330:CDS
TCTTATAAGAAGGAAGAGAA+TGG 0.577851 7_2:+18093243 Msa1051330:CDS
TTCGGGAGATAGATGATACT+AGG 0.580059 7_2:+18098157 Msa1051330:three_prime_UTR
AAAGGCAAGACACTACTGTT+GGG 0.581737 7_2:+18097832 Msa1051330:three_prime_UTR
ACCTCCAACATCAACATCAC+CGG 0.581822 7_2:-18092848 None:intergenic
ACTGTGAGAAGAATAGATGC+AGG 0.582050 7_2:+18097680 Msa1051330:CDS
ACCGGTGATGTTGATGTTGG+AGG 0.584105 7_2:+18092847 Msa1051330:CDS
GTATGGTGCTGCAGCTGTAG+AGG 0.585760 7_2:+18098126 Msa1051330:three_prime_UTR
ATCATCTATCTCCCGAACCT+GGG 0.587318 7_2:-18098151 None:intergenic
AGTAGATTGGAATGCTTGGA+GGG 0.587529 7_2:+18094833 Msa1051330:CDS
TGCACTGTCAGCTAGACTCT+CGG 0.590430 7_2:-18094744 None:intergenic
ATGTTGATGTCAGTCTATGA+AGG 0.594573 7_2:+18097786 Msa1051330:CDS
AATACCGGTGATGTTGATGT+TGG 0.597119 7_2:+18092844 Msa1051330:CDS
ATAGATGATACTAGGTTACA+AGG 0.597406 7_2:+18098165 Msa1051330:three_prime_UTR
AGAGAGGTTGGTTGAATCCG+AGG 0.600549 7_2:+18093167 Msa1051330:CDS
ACAGAAAGGTCACAACTGAA+AGG 0.606504 7_2:-18097748 None:intergenic
GGAGGGATCACTGCAGAAAG+CGG 0.612584 7_2:+18094850 Msa1051330:CDS
AGAGTGTAGAGTTACTTGAA+AGG 0.618606 7_2:+18094582 Msa1051330:CDS
CTGAAGCAAACATATAAGAA+GGG 0.621626 7_2:+18095979 Msa1051330:CDS
GTGTTCTCAAGTTAGAGACA+TGG 0.624574 7_2:+18094412 Msa1051330:CDS
GAGTCTAGCTGACAGTGCAG+AGG 0.624641 7_2:+18094748 Msa1051330:CDS
AATCTCGTAAAACTGCTCCT+CGG 0.624682 7_2:-18093184 None:intergenic
TTGAAGAAAAGCTAAATCTG+AGG 0.628560 7_2:+18094012 Msa1051330:CDS
CTACTGTTGGGATCTTGGCA+GGG 0.631141 7_2:+18097844 Msa1051330:three_prime_UTR
AGACGAGTTAATTCAAACAG+AGG 0.633790 7_2:+18094049 Msa1051330:CDS
GTATGGTGATGCAGCTGTAG+AGG 0.637203 7_2:+18097947 Msa1051330:three_prime_UTR
ACTAGGTTACAAGACACTGT+AGG 0.637631 7_2:+18097995 Msa1051330:three_prime_UTR
ACAAGAAACTGAATGCCAGT+TGG 0.639494 7_2:+18094340 Msa1051330:CDS
ACAATCTATCTCCAAGACCT+GGG 0.641442 7_2:-18097972 None:intergenic
ACTTTGGAAGGTGAATTAGA+GGG 0.646483 7_2:+18092970 Msa1051330:CDS
CAATGCGCGTGAGATCCTGA+AGG 0.651405 7_2:+18094112 Msa1051330:CDS
AACTAATGAAGAACTCAACA+AGG 0.662178 7_2:+18094523 Msa1051330:CDS
GGGATCACTGCAGAAAGCGG+AGG 0.666512 7_2:+18094853 Msa1051330:CDS
TGTTGATGTCAGTCTATGAA+GGG 0.670683 7_2:+18097787 Msa1051330:exon
ACAACAGGGAATGTTGAAGA+CGG 0.671738 7_2:+18093837 Msa1051330:intron
AATGCGCGTGAGATCCTGAA+GGG 0.678003 7_2:+18094113 Msa1051330:CDS
ATCTAATGCTGATTTAAACG+AGG 0.690867 7_2:+18094793 Msa1051330:CDS
ACAGGGAATGTTGAAGACGG+TGG 0.694865 7_2:+18093840 Msa1051330:intron
AGACGGTGGAAATGTCCAAG+AGG 0.721239 7_2:+18093854 Msa1051330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTAAAAAATAAGAAA+AGG + chr7_2:18093494-18093513 Msa1051330:intron 10.0%
!! TTATTAGAAATGAAAATTTA+GGG - chr7_2:18093779-18093798 None:intergenic 10.0%
!! TTTATTAGAAATGAAAATTT+AGG - chr7_2:18093780-18093799 None:intergenic 10.0%
!! TTTACCATTATTATTATATA+AGG + chr7_2:18095290-18095309 Msa1051330:intron 10.0%
!! AAAACCTTATATAATAATAA+TGG - chr7_2:18095297-18095316 None:intergenic 10.0%
!!! GTTAAATATTTTTCTTTTTA+TGG + chr7_2:18096659-18096678 Msa1051330:intron 10.0%
!! ATTCAAATACTGAAATATAT+AGG - chr7_2:18095616-18095635 None:intergenic 15.0%
!!! CATAAATGTTTAAAACAAAT+GGG - chr7_2:18095840-18095859 None:intergenic 15.0%
!!! ACATAAATGTTTAAAACAAA+TGG - chr7_2:18095841-18095860 None:intergenic 15.0%
!!! ATATTTTGAAACAATTGTTA+AGG - chr7_2:18096549-18096568 None:intergenic 15.0%
!!! TACTATTTCTATTAAATTGT+TGG + chr7_2:18096887-18096906 Msa1051330:intron 15.0%
!! AATAAATAAAGAACAATATC+AGG - chr7_2:18097436-18097455 None:intergenic 15.0%
!!! AAATTTTGTTTCAATAGTAT+TGG + chr7_2:18098238-18098257 Msa1051330:three_prime_UTR 15.0%
!!! ATTTTTTACGATTAGAACAA+TGG + chr7_2:18092801-18092820 Msa1051330:exon 20.0%
!!! GAGTATTTTTATGATGAATT+TGG + chr7_2:18092945-18092964 Msa1051330:CDS 20.0%
!!! AACAATCTTTTAGTTTTGAA+AGG + chr7_2:18093211-18093230 Msa1051330:CDS 20.0%
!! TTTCATTTAGTTGTTAGAAA+AGG + chr7_2:18093365-18093384 Msa1051330:intron 20.0%
!! TTCATTTAGTTGTTAGAAAA+GGG + chr7_2:18093366-18093385 Msa1051330:intron 20.0%
!! ATATCACATGAAAATTAATG+TGG - chr7_2:18093407-18093426 None:intergenic 20.0%
!! ATAAAAATATTCTCATTGGT+CGG - chr7_2:18093556-18093575 None:intergenic 20.0%
!! TCAGATAAAAATATTCTCAT+TGG - chr7_2:18093560-18093579 None:intergenic 20.0%
!! TAATTCATATACACAATCAA+TGG - chr7_2:18093754-18093773 None:intergenic 20.0%
!! ATTAATCAACATAAATAACC+AGG + chr7_2:18095088-18095107 Msa1051330:intron 20.0%
!! TTAATCAACATAAATAACCA+GGG + chr7_2:18095089-18095108 Msa1051330:intron 20.0%
!!! GTATGTTTAAGTTACATAAA+AGG - chr7_2:18095350-18095369 None:intergenic 20.0%
!! AAATGTATTTGTTTCATCTT+AGG + chr7_2:18096123-18096142 Msa1051330:intron 20.0%
!! AATGTATTTGTTTCATCTTA+GGG + chr7_2:18096124-18096143 Msa1051330:intron 20.0%
!! CAAAAATATGTCTCTAAATA+TGG - chr7_2:18096168-18096187 None:intergenic 20.0%
!! GAAAAATATTTAACTAAGCT+AGG - chr7_2:18096653-18096672 None:intergenic 20.0%
!!! TAAAGTGTTATTTGTTAGTT+AGG + chr7_2:18096764-18096783 Msa1051330:intron 20.0%
!! AATAAATGTAAAACAGTACT+TGG + chr7_2:18096799-18096818 Msa1051330:intron 20.0%
!! AATAGCATTAAATACAATGA+AGG - chr7_2:18097070-18097089 None:intergenic 20.0%
! TATGATGAATTTGGAAACTT+TGG + chr7_2:18092954-18092973 Msa1051330:CDS 25.0%
!!! GATATGGATTGTGTTTTAAA+GGG + chr7_2:18093018-18093037 Msa1051330:CDS 25.0%
!!! TTTGAGTTTGATTTGTTATG+TGG + chr7_2:18093042-18093061 Msa1051330:CDS 25.0%
!!! TTGAGTTTGATTTGTTATGT+GGG + chr7_2:18093043-18093062 Msa1051330:CDS 25.0%
! TAACAACTAAATGAAAAGAC+AGG - chr7_2:18093361-18093380 None:intergenic 25.0%
! GAAAATCCAACACATAAAAA+AGG - chr7_2:18093813-18093832 None:intergenic 25.0%
! GAAAAATAGAGACGTTAATT+TGG + chr7_2:18094247-18094266 Msa1051330:CDS 25.0%
! TTTCTTTCAATTCTACGATA+AGG - chr7_2:18094442-18094461 None:intergenic 25.0%
! AGTTCAGTGTAAAAAATTGA+CGG + chr7_2:18094499-18094518 Msa1051330:CDS 25.0%
!!! CAGCAAACTTTTAAAAACTT+TGG - chr7_2:18094918-18094937 None:intergenic 25.0%
! TATTCAAGAGAGATATTATC+AGG - chr7_2:18095038-18095057 None:intergenic 25.0%
!! AGAAAATAAAAAGCATAGTC+TGG - chr7_2:18095210-18095229 None:intergenic 25.0%
!! ATTTGATTCTAAAAAAGTGC+TGG - chr7_2:18095253-18095272 None:intergenic 25.0%
!! GTTTAAGTTACATAAAAGGT+TGG - chr7_2:18095346-18095365 None:intergenic 25.0%
!!! TGTTATAGGTCCATTTTTTA+AGG - chr7_2:18095503-18095522 None:intergenic 25.0%
! TTAAAAAATGGACCTATAAC+AGG + chr7_2:18095502-18095521 Msa1051330:intron 25.0%
! AATACTGAAATATATAGGTG+AGG - chr7_2:18095611-18095630 None:intergenic 25.0%
! AAATCAAAGAGGAGAAAAAA+AGG - chr7_2:18095658-18095677 None:intergenic 25.0%
! TTAACAACTGTAGTTATGTA+TGG + chr7_2:18095698-18095717 Msa1051330:intron 25.0%
!!! CTTCAATCAAGTTGATTTAT+AGG - chr7_2:18095756-18095775 None:intergenic 25.0%
! TAAAATCTCATACTATAGTC+AGG - chr7_2:18095872-18095891 None:intergenic 25.0%
! AAGGACAAAAATTTCAACTA+AGG - chr7_2:18095908-18095927 None:intergenic 25.0%
!! TTTTACGACAAAGTTATCTT+TGG + chr7_2:18096223-18096242 Msa1051330:intron 25.0%
! GTAAAACATTGTCTTGTATT+AGG + chr7_2:18096424-18096443 Msa1051330:intron 25.0%
!! TGTTTGATCTATAGTGTTTT+TGG + chr7_2:18096485-18096504 Msa1051330:intron 25.0%
!!! TTTTGAAACAATTGTTAAGG+AGG - chr7_2:18096546-18096565 None:intergenic 25.0%
! TTTGAATGTACTAACATTCA+TGG + chr7_2:18096613-18096632 Msa1051330:intron 25.0%
!!! AAAAGTTGATACGACATATA+AGG - chr7_2:18096734-18096753 None:intergenic 25.0%
!!! CATGAAACATTCATGTTTTT+TGG + chr7_2:18097019-18097038 Msa1051330:intron 25.0%
! AGCATTATTGAAGTGTATTA+TGG - chr7_2:18097097-18097116 None:intergenic 25.0%
! ATAATACACTTCAATAATGC+TGG + chr7_2:18097096-18097115 Msa1051330:intron 25.0%
! ATTATGGTATTATCTTCTGT+TGG + chr7_2:18097292-18097311 Msa1051330:intron 25.0%
! AAAAAAAAAAGGGGACAATT+TGG - chr7_2:18097407-18097426 None:intergenic 25.0%
! AGGAAAGGAAAAAAAAAAAG+GGG - chr7_2:18097416-18097435 None:intergenic 25.0%
! CAGGAAAGGAAAAAAAAAAA+GGG - chr7_2:18097417-18097436 None:intergenic 25.0%
! TCAGGAAAGGAAAAAAAAAA+AGG - chr7_2:18097418-18097437 None:intergenic 25.0%
! ATAAAGAACAATATCAGGAA+AGG - chr7_2:18097431-18097450 None:intergenic 25.0%
! GTAATAACAGAAGAGAAATA+TGG + chr7_2:18097542-18097561 Msa1051330:intron 25.0%
!! CAAGTAATCATGGTTTTTAA+GGG - chr7_2:18098091-18098110 None:intergenic 25.0%
!! TCAAGTAATCATGGTTTTTA+AGG - chr7_2:18098092-18098111 None:intergenic 25.0%
! TTGTAAGATTCAAGTAATCA+TGG - chr7_2:18098101-18098120 None:intergenic 25.0%
!! CAAAGTGTTGAAGATAATAC+CGG + chr7_2:18092829-18092848 Msa1051330:CDS 30.0%
!! AGATAATGGAGAAGTTATTG+TGG + chr7_2:18092876-18092895 Msa1051330:CDS 30.0%
ATGAATTTGGAAACTTTGGA+AGG + chr7_2:18092958-18092977 Msa1051330:CDS 30.0%
!! CGATATGGATTGTGTTTTAA+AGG + chr7_2:18093017-18093036 Msa1051330:CDS 30.0%
!! TGAGTTTGATTTGTTATGTG+GGG + chr7_2:18093044-18093063 Msa1051330:CDS 30.0%
!! TAGAGATTTGGGTTTGTTTT+TGG + chr7_2:18093083-18093102 Msa1051330:CDS 30.0%
GACTTTGTCTTCTTATAAGA+AGG + chr7_2:18093233-18093252 Msa1051330:CDS 30.0%
TCTTATAAGAAGGAAGAGAA+TGG + chr7_2:18093243-18093262 Msa1051330:CDS 30.0%
! AAACGCCTATTTTGCATTAA+TGG + chr7_2:18093459-18093478 Msa1051330:intron 30.0%
GAGTTCCATTAATGCAAAAT+AGG - chr7_2:18093467-18093486 None:intergenic 30.0%
TATGAAGTCACACATATGAT+TGG - chr7_2:18093650-18093669 None:intergenic 30.0%
AGTTAGAACATTAACATTGC+TGG - chr7_2:18093699-18093718 None:intergenic 30.0%
! TTGGATTTTCAATGACAACA+GGG + chr7_2:18093823-18093842 Msa1051330:intron 30.0%
! AGCAACATAGAAACATTTTG+AGG + chr7_2:18093925-18093944 Msa1051330:CDS 30.0%
TTGAAGAAAAGCTAAATCTG+AGG + chr7_2:18094012-18094031 Msa1051330:CDS 30.0%
! TTAACTCGTCTTCTAAAGAA+AGG - chr7_2:18094040-18094059 None:intergenic 30.0%
ATACTGTTGCTGATATTCAT+TGG - chr7_2:18094384-18094403 None:intergenic 30.0%
AACTAATGAAGAACTCAACA+AGG + chr7_2:18094523-18094542 Msa1051330:CDS 30.0%
GTGTTACACAATTGAAGATA+TGG + chr7_2:18094682-18094701 Msa1051330:CDS 30.0%
AGATATGGAACATGTGATAA+AGG + chr7_2:18094697-18094716 Msa1051330:CDS 30.0%
GATAAAGGATCTTAAGTCAA+AGG + chr7_2:18094712-18094731 Msa1051330:CDS 30.0%
!! ATCTAATGCTGATTTAAACG+AGG + chr7_2:18094793-18094812 Msa1051330:CDS 30.0%
ATGACAACTGCAAAGAATAT+TGG + chr7_2:18094884-18094903 Msa1051330:CDS 30.0%
GAAACAAGATTTCAAAAGCT+TGG - chr7_2:18094987-18095006 None:intergenic 30.0%
! TGATAATTTGTGTCAACAAG+AGG + chr7_2:18095133-18095152 Msa1051330:intron 30.0%
! GATAATTTGTGTCAACAAGA+GGG + chr7_2:18095134-18095153 Msa1051330:intron 30.0%
! ATAATTTGTGTCAACAAGAG+GGG + chr7_2:18095135-18095154 Msa1051330:intron 30.0%
AAAAAGACTAACAAGCTCAT+AGG - chr7_2:18095387-18095406 None:intergenic 30.0%
TAAACAACTTTCAAAATGCC+AGG + chr7_2:18095473-18095492 Msa1051330:intron 30.0%
! ATGACTACTTTGAGAATGTT+AGG - chr7_2:18095546-18095565 None:intergenic 30.0%
TGAAAGTGGAAAAATCAAAG+AGG - chr7_2:18095669-18095688 None:intergenic 30.0%
AACTACAGTTGTTAAACTCA+AGG - chr7_2:18095693-18095712 None:intergenic 30.0%
CAACTTGATTGAAGATTCAT+AGG + chr7_2:18095762-18095781 Msa1051330:intron 30.0%
AATTTCAACTAAGGATGAAC+AGG - chr7_2:18095899-18095918 None:intergenic 30.0%
ACTGAAGCAAACATATAAGA+AGG + chr7_2:18095978-18095997 Msa1051330:CDS 30.0%
CTGAAGCAAACATATAAGAA+GGG + chr7_2:18095979-18095998 Msa1051330:CDS 30.0%
! AAAATGACTTGCATAAGTAG+TGG + chr7_2:18096194-18096213 Msa1051330:intron 30.0%
GAACTAGTGGGAAAAAAAAA+AGG - chr7_2:18096388-18096407 None:intergenic 30.0%
!!! TTTTTTTTCCCACTAGTTCA+TGG + chr7_2:18096389-18096408 Msa1051330:intron 30.0%
AAACAATTTGAACACACTAG+TGG - chr7_2:18096470-18096489 None:intergenic 30.0%
!!! TTTTGGTTCTCTCTAACTAT+TGG + chr7_2:18096502-18096521 Msa1051330:intron 30.0%
!!! ATAGGATGTTTTAACATGAG+TGG - chr7_2:18096577-18096596 None:intergenic 30.0%
CTCATGTTAAAACATCCTAT+TGG + chr7_2:18096577-18096596 Msa1051330:intron 30.0%
AACAGAAATATACTGCCAAT+AGG - chr7_2:18096595-18096614 None:intergenic 30.0%
! ATATGCACATATTTCTAACC+AGG - chr7_2:18096842-18096861 None:intergenic 30.0%
!!! TAAATTGTTGGCTCTGATTT+TGG + chr7_2:18096899-18096918 Msa1051330:intron 30.0%
! GGACTGCATAATTACTATTT+TGG + chr7_2:18096920-18096939 Msa1051330:intron 30.0%
ACAATTAAAACGAGAAGAGT+CGG + chr7_2:18097122-18097141 Msa1051330:intron 30.0%
TCGGCAATAAATCTCATAAA+AGG + chr7_2:18097141-18097160 Msa1051330:intron 30.0%
CGGCAATAAATCTCATAAAA+GGG + chr7_2:18097142-18097161 Msa1051330:intron 30.0%
!!! GATTGACCTACCTTTATTTT+TGG + chr7_2:18097809-18097828 Msa1051330:three_prime_UTR 30.0%
!!! ACCTACCTTTATTTTTGGAA+AGG + chr7_2:18097814-18097833 Msa1051330:three_prime_UTR 30.0%
TCTTGCCTTTCCAAAAATAA+AGG - chr7_2:18097822-18097841 None:intergenic 30.0%
!!! CAACAAATCGTCGTTTTTAA+GGG - chr7_2:18097911-18097930 None:intergenic 30.0%
!!! TCAACAAATCGTCGTTTTTA+AGG - chr7_2:18097912-18097931 None:intergenic 30.0%
! ATAGCACGTATTTTCTTTTG+CGG + chr7_2:18098059-18098078 Msa1051330:three_prime_UTR 30.0%
TGAATCTTACAATTGCAGTA+TGG + chr7_2:18098109-18098128 Msa1051330:three_prime_UTR 30.0%
ATAGATGATACTAGGTTACA+AGG + chr7_2:18098165-18098184 Msa1051330:three_prime_UTR 30.0%
!!! TGTGGATTTTGAAATGAGTG+TGG + chr7_2:18092894-18092913 Msa1051330:CDS 35.0%
! AACTTTGGAAGGTGAATTAG+AGG + chr7_2:18092969-18092988 Msa1051330:CDS 35.0%
! ACTTTGGAAGGTGAATTAGA+GGG + chr7_2:18092970-18092989 Msa1051330:CDS 35.0%
TGACGAAGAAAACATCGATA+TGG + chr7_2:18093002-18093021 Msa1051330:CDS 35.0%
GAGATTCTTCTTTGAACGAT+TGG + chr7_2:18093142-18093161 Msa1051330:CDS 35.0%
!! TTAGAAAAGGGTATCGTATG+TGG + chr7_2:18093378-18093397 Msa1051330:intron 35.0%
!! TAGAAAAGGGTATCGTATGT+GGG + chr7_2:18093379-18093398 Msa1051330:intron 35.0%
! AGAGTCTAGATTTTTCACAC+TGG - chr7_2:18093614-18093633 None:intergenic 35.0%
CATATGTGTGACTTCATAAG+TGG + chr7_2:18093652-18093671 Msa1051330:intron 35.0%
!!! TGCTGTCCTTTTTTATGTGT+TGG + chr7_2:18093804-18093823 Msa1051330:intron 35.0%
! GTTGGATTTTCAATGACAAC+AGG + chr7_2:18093822-18093841 Msa1051330:intron 35.0%
AGACGAGTTAATTCAAACAG+AGG + chr7_2:18094049-18094068 Msa1051330:CDS 35.0%
AGTTTGGGAAAGATTGTTTG+AGG + chr7_2:18094085-18094104 Msa1051330:CDS 35.0%
! CTTCATTTGAAATTCCCTTC+AGG - chr7_2:18094130-18094149 None:intergenic 35.0%
GGGAATTTCAAATGAAGTGT+TGG + chr7_2:18094133-18094152 Msa1051330:CDS 35.0%
CAAGCTTTCTCAGTTCAATT+TGG + chr7_2:18094163-18094182 Msa1051330:CDS 35.0%
CTTTCTCAGTTCAATTTGGT+TGG + chr7_2:18094167-18094186 Msa1051330:CDS 35.0%
ACAGCTGAAGCAGTTAATTT+AGG + chr7_2:18094287-18094306 Msa1051330:CDS 35.0%
!! CTGACTCTTTTAAAAGACTG+TGG + chr7_2:18094548-18094567 Msa1051330:CDS 35.0%
AGAGTGTAGAGTTACTTGAA+AGG + chr7_2:18094582-18094601 Msa1051330:CDS 35.0%
AAGTTTCTTGAGGAGTAGAT+TGG + chr7_2:18094820-18094839 Msa1051330:CDS 35.0%
!! TAAAAGTTTGCTGACACAGT+TGG + chr7_2:18094925-18094944 Msa1051330:CDS 35.0%
TCTATGGCAGTATAATGTAG+TGG - chr7_2:18095013-18095032 None:intergenic 35.0%
GAGATATTATCAGGTCTCTA+TGG - chr7_2:18095029-18095048 None:intergenic 35.0%
! TAAAAAGCATAGTCTGGCTT+GGG - chr7_2:18095204-18095223 None:intergenic 35.0%
! ATAAAAAGCATAGTCTGGCT+TGG - chr7_2:18095205-18095224 None:intergenic 35.0%
ATGGACCTATAACAGGTAAT+AGG + chr7_2:18095509-18095528 Msa1051330:intron 35.0%
CTGAAATATATAGGTGAGGT+GGG - chr7_2:18095607-18095626 None:intergenic 35.0%
ACTGAAATATATAGGTGAGG+TGG - chr7_2:18095608-18095627 None:intergenic 35.0%
GTTAAACTCAAGGTTGAAAG+TGG - chr7_2:18095683-18095702 None:intergenic 35.0%
ATAGGATGAACATTTAGCAG+TGG + chr7_2:18095780-18095799 Msa1051330:intron 35.0%
!! CTATTGTATGGCTTTGGATA+TGG + chr7_2:18096304-18096323 Msa1051330:intron 35.0%
!!! AACTTTTGCCTGTTTTTGTC+TGG + chr7_2:18096340-18096359 Msa1051330:intron 35.0%
!! TCTTTTTATGGTAGTCTTGC+TGG + chr7_2:18096671-18096690 Msa1051330:intron 35.0%
GTAAACACAATTACTTCCTC+CGG + chr7_2:18096976-18096995 Msa1051330:intron 35.0%
! TTTTTGCTTACAATCGAGAC+CGG - chr7_2:18096998-18097017 None:intergenic 35.0%
ACCATAATACTTACTCCCTT+CGG - chr7_2:18097280-18097299 None:intergenic 35.0%
AAAAAAGGGGACAATTTGGA+AGG - chr7_2:18097403-18097422 None:intergenic 35.0%
!! TGCTCCTATTTTTCTTTTCC+AGG + chr7_2:18097586-18097605 Msa1051330:intron 35.0%
!! GCTCCTATTTTTCTTTTCCA+GGG + chr7_2:18097587-18097606 Msa1051330:intron 35.0%
!! CTCCTATTTTTCTTTTCCAG+GGG + chr7_2:18097588-18097607 Msa1051330:intron 35.0%
TTCCCCTGGAAAAGAAAAAT+AGG - chr7_2:18097593-18097612 None:intergenic 35.0%
TCAGATTCAATACCAGATGT+TGG + chr7_2:18097656-18097675 Msa1051330:CDS 35.0%
CAGATTCAATACCAGATGTT+GGG + chr7_2:18097657-18097676 Msa1051330:CDS 35.0%
CAAGTCCTTGAAATACAGAA+AGG - chr7_2:18097765-18097784 None:intergenic 35.0%
ATGTTGATGTCAGTCTATGA+AGG + chr7_2:18097786-18097805 Msa1051330:CDS 35.0%
TGTTGATGTCAGTCTATGAA+GGG + chr7_2:18097787-18097806 Msa1051330:exon 35.0%
GCCTTTCCAAAAATAAAGGT+AGG - chr7_2:18097818-18097837 None:intergenic 35.0%
TCTTGGAGATAGATTGTACT+AGG + chr7_2:18097978-18097997 Msa1051330:three_prime_UTR 35.0%
!! ACACTGTAGGTTTTAATGCA+AGG + chr7_2:18098008-18098027 Msa1051330:three_prime_UTR 35.0%
TACAAGGACAATGACATTGT+AGG + chr7_2:18098181-18098200 Msa1051330:three_prime_UTR 35.0%
AATACCGGTGATGTTGATGT+TGG + chr7_2:18092844-18092863 Msa1051330:CDS 40.0%
!! GTTGGAGGTGTTTCAGATAA+TGG + chr7_2:18092862-18092881 Msa1051330:CDS 40.0%
!! GGTTCTGAGGTTAGAGATTT+GGG + chr7_2:18093072-18093091 Msa1051330:CDS 40.0%
ACACTTCATGCTGAGATTTC+TGG + chr7_2:18093108-18093127 Msa1051330:CDS 40.0%
AATCTCGTAAAACTGCTCCT+CGG - chr7_2:18093187-18093206 None:intergenic 40.0%
!! AGAAAAGGGTATCGTATGTG+GGG + chr7_2:18093380-18093399 Msa1051330:intron 40.0%
ACAACAGGGAATGTTGAAGA+CGG + chr7_2:18093837-18093856 Msa1051330:intron 40.0%
TCGAAGTTTGATCATCCTCT+TGG - chr7_2:18093872-18093891 None:intergenic 40.0%
GAGGATGCTTGAGAAATCTT+TGG + chr7_2:18093944-18093963 Msa1051330:CDS 40.0%
AGGAAGAAGCAATCGAAGTT+TGG + chr7_2:18094069-18094088 Msa1051330:CDS 40.0%
GGAAGAAGCAATCGAAGTTT+GGG + chr7_2:18094070-18094089 Msa1051330:CDS 40.0%
TTCCAGCTTATCTCTAAGCT+CGG - chr7_2:18094210-18094229 None:intergenic 40.0%
ACAAGAAACTGAATGCCAGT+TGG + chr7_2:18094340-18094359 Msa1051330:CDS 40.0%
AGACTTTCACATTCACCAAC+TGG - chr7_2:18094358-18094377 None:intergenic 40.0%
GTGTTCTCAAGTTAGAGACA+TGG + chr7_2:18094412-18094431 Msa1051330:CDS 40.0%
GTTACTTGAAAGGCAGCTAA+AGG + chr7_2:18094592-18094611 Msa1051330:CDS 40.0%
ACGAGGAAGTAAGTTTCTTG+AGG + chr7_2:18094810-18094829 Msa1051330:CDS 40.0%
AGTAGATTGGAATGCTTGGA+GGG + chr7_2:18094833-18094852 Msa1051330:CDS 40.0%
!! GAGAGAGCGTCTTAATAAGA+AGG + chr7_2:18094955-18094974 Msa1051330:CDS 40.0%
ATGCAGATCAATTGATACCC+TGG - chr7_2:18095109-18095128 None:intergenic 40.0%
! AGGGTATCAATTGATCTGCA+TGG + chr7_2:18095108-18095127 Msa1051330:intron 40.0%
ACAACTTTCAAAATGCCAGG+CGG + chr7_2:18095476-18095495 Msa1051330:intron 40.0%
TCTGGCCTATTACCTGTTAT+AGG - chr7_2:18095517-18095536 None:intergenic 40.0%
TTCTCAAAGTAGTCATGCTC+AGG + chr7_2:18095550-18095569 Msa1051330:intron 40.0%
TATATAGGTGAGGTGGGAAT+CGG - chr7_2:18095601-18095620 None:intergenic 40.0%
!! ACATTTAGCAGTGGTTTGCT+TGG + chr7_2:18095789-18095808 Msa1051330:intron 40.0%
! AAGTTTGTTCTCGCTTGCTA+AGG - chr7_2:18095947-18095966 None:intergenic 40.0%
! AGCAAGCGAGAACAAACTTT+TGG + chr7_2:18095948-18095967 Msa1051330:CDS 40.0%
! GCTTTGGATATGGTTTCTGT+TGG + chr7_2:18096314-18096333 Msa1051330:intron 40.0%
AGCTACTACCAGACAAAAAC+AGG - chr7_2:18096351-18096370 None:intergenic 40.0%
TTTCCCACTAGTTCATGGAT+TGG + chr7_2:18096394-18096413 Msa1051330:intron 40.0%
TCACCAATCCATGAACTAGT+GGG - chr7_2:18096400-18096419 None:intergenic 40.0%
ATCACCAATCCATGAACTAG+TGG - chr7_2:18096401-18096420 None:intergenic 40.0%
AACATTCATGGCATGCTTCT+AGG + chr7_2:18096625-18096644 Msa1051330:intron 40.0%
!! CGTATCAACTTTTTCTTCGC+TGG + chr7_2:18096741-18096760 Msa1051330:intron 40.0%
TGTGCATATAGCATGCTATG+TGG + chr7_2:18096853-18096872 Msa1051330:intron 40.0%
ACTATCTGTCTGCATTGTAC+AGG - chr7_2:18096958-18096977 None:intergenic 40.0%
AATACTTACTCCCTTCGGTT+CGG - chr7_2:18097275-18097294 None:intergenic 40.0%
ACCGAAGGGAGTAAGTATTA+TGG + chr7_2:18097276-18097295 Msa1051330:intron 40.0%
ACTCTCCTATGATTCAGTTC+AGG - chr7_2:18097320-18097339 None:intergenic 40.0%
ACTGTGAGAAGAATAGATGC+AGG + chr7_2:18097680-18097699 Msa1051330:CDS 40.0%
AAAGGCAAGACACTACTGTT+GGG + chr7_2:18097832-18097851 Msa1051330:three_prime_UTR 40.0%
GGGAAATGGCATCATATGAA+AGG + chr7_2:18097878-18097897 Msa1051330:three_prime_UTR 40.0%
GAATCCTTACAAGTGCAGTA+TGG + chr7_2:18097930-18097949 Msa1051330:three_prime_UTR 40.0%
ATCACCATACTGCACTTGTA+AGG - chr7_2:18097937-18097956 None:intergenic 40.0%
ACAATCTATCTCCAAGACCT+GGG - chr7_2:18097975-18097994 None:intergenic 40.0%
TACAATCTATCTCCAAGACC+TGG - chr7_2:18097976-18097995 None:intergenic 40.0%
ACTAGGTTACAAGACACTGT+AGG + chr7_2:18097995-18098014 Msa1051330:three_prime_UTR 40.0%
TTCGGGAGATAGATGATACT+AGG + chr7_2:18098157-18098176 Msa1051330:three_prime_UTR 40.0%
ACCTCCAACATCAACATCAC+CGG - chr7_2:18092851-18092870 None:intergenic 45.0%
!! TGATTTGTTATGTGGGGTGC+TGG + chr7_2:18093050-18093069 Msa1051330:CDS 45.0%
!! GATTTGTTATGTGGGGTGCT+GGG + chr7_2:18093051-18093070 Msa1051330:CDS 45.0%
!! GGGTTCTGAGGTTAGAGATT+TGG + chr7_2:18093071-18093090 Msa1051330:CDS 45.0%
CTTTGAACGATTGGCAAGAG+AGG + chr7_2:18093151-18093170 Msa1051330:CDS 45.0%
ATCCGAGCTTAGAGATAAGC+TGG + chr7_2:18094205-18094224 Msa1051330:CDS 45.0%
GAGGAGTAGATTGGAATGCT+TGG + chr7_2:18094829-18094848 Msa1051330:CDS 45.0%
GAGTAGATTGGAATGCTTGG+AGG + chr7_2:18094832-18094851 Msa1051330:CDS 45.0%
! TTTGCTGACACAGTTGGCTT+TGG + chr7_2:18094931-18094950 Msa1051330:CDS 45.0%
TGTGTCAACAAGAGGGGAAT+AGG + chr7_2:18095141-18095160 Msa1051330:intron 45.0%
AGGGGAATAGGAAGATTGTC+AGG + chr7_2:18095153-18095172 Msa1051330:intron 45.0%
!!! TCCATTTTTTAAGGACCGCC+TGG - chr7_2:18095494-18095513 None:intergenic 45.0%
GAGAATGTTAGGCTCGAATC+TGG - chr7_2:18095535-18095554 None:intergenic 45.0%
!! TGGTTTGCTTGGCTGATGAT+GGG + chr7_2:18095800-18095819 Msa1051330:intron 45.0%
!! TTGGCTGATGATGGGATGTA+TGG + chr7_2:18095808-18095827 Msa1051330:intron 45.0%
AGGAGGATAGCTGCAAGTAA+AGG - chr7_2:18095927-18095946 None:intergenic 45.0%
! TTTGTTCTCGCTTGCTAAGG+AGG - chr7_2:18095944-18095963 None:intergenic 45.0%
GACTTTGTCTTCTGAGCATG+AGG + chr7_2:18096023-18096042 Msa1051330:CDS 45.0%
GCAATGCTGCTGCTATTGTA+TGG + chr7_2:18096292-18096311 Msa1051330:intron 45.0%
CTGCTGCTATTGTATGGCTT+TGG + chr7_2:18096298-18096317 Msa1051330:intron 45.0%
AGTACTTGGCATAGAGTGCA+TGG + chr7_2:18096813-18096832 Msa1051330:intron 45.0%
TATAACAGAGACCGAACCGA+AGG + chr7_2:18097261-18097280 Msa1051330:intron 45.0%
ATAACAGAGACCGAACCGAA+GGG + chr7_2:18097262-18097281 Msa1051330:intron 45.0%
TGGCACCTGAACTGAATCAT+AGG + chr7_2:18097312-18097331 Msa1051330:intron 45.0%
! TTTTCCAGGGGAACAAGACA+TGG + chr7_2:18097600-18097619 Msa1051330:intron 45.0%
!! TTTTCCATGTCTTGTTCCCC+TGG - chr7_2:18097607-18097626 None:intergenic 45.0%
GAAAGGCAAGACACTACTGT+TGG + chr7_2:18097831-18097850 Msa1051330:three_prime_UTR 45.0%
AGACACTACTGTTGGGATCT+TGG + chr7_2:18097839-18097858 Msa1051330:three_prime_UTR 45.0%
ATCATCTATCTCCCGAACCT+GGG - chr7_2:18098154-18098173 None:intergenic 45.0%
TATCATCTATCTCCCGAACC+TGG - chr7_2:18098155-18098174 None:intergenic 45.0%
ACCGGTGATGTTGATGTTGG+AGG + chr7_2:18092847-18092866 Msa1051330:CDS 50.0%
GAACGATTGGCAAGAGAGGT+TGG + chr7_2:18093155-18093174 Msa1051330:CDS 50.0%
! AGAGAGGTTGGTTGAATCCG+AGG + chr7_2:18093167-18093186 Msa1051330:CDS 50.0%
ACAGGGAATGTTGAAGACGG+TGG + chr7_2:18093840-18093859 Msa1051330:intron 50.0%
AGACGGTGGAAATGTCCAAG+AGG + chr7_2:18093854-18093873 Msa1051330:CDS 50.0%
AATGCGCGTGAGATCCTGAA+GGG + chr7_2:18094113-18094132 Msa1051330:CDS 50.0%
! GACTGATTTACAGCTGCAGC+AGG + chr7_2:18094616-18094635 Msa1051330:CDS 50.0%
TGCACTGTCAGCTAGACTCT+CGG - chr7_2:18094747-18094766 None:intergenic 50.0%
GGAAGATTGTCAGGAGCCTA+TGG + chr7_2:18095162-18095181 Msa1051330:intron 50.0%
TTGTCAGGAGCCTATGGTCT+AGG + chr7_2:18095168-18095187 Msa1051330:intron 50.0%
CACTCAAGTGGTCAGTAGTG+TGG - chr7_2:18095417-18095436 None:intergenic 50.0%
CACACTACTGACCACTTGAG+TGG + chr7_2:18095415-18095434 Msa1051330:intron 50.0%
ACTGACCACTTGAGTGGTGT+AGG + chr7_2:18095421-18095440 Msa1051330:intron 50.0%
GAAAGCCTACACCACTCAAG+TGG - chr7_2:18095429-18095448 None:intergenic 50.0%
GCCAGGCGGTCCTTAAAAAA+TGG + chr7_2:18095490-18095509 Msa1051330:intron 50.0%
AGTCATGCTCAGGTCTTGCA+AGG + chr7_2:18095560-18095579 Msa1051330:intron 50.0%
!! GTGGTTTGCTTGGCTGATGA+TGG + chr7_2:18095799-18095818 Msa1051330:intron 50.0%
!! GCTGATGATGGGATGTATGG+AGG + chr7_2:18095811-18095830 Msa1051330:intron 50.0%
GCATAGAGTGCATGGTTTCC+TGG + chr7_2:18096821-18096840 Msa1051330:intron 50.0%
CTGCATTGTACAGGTGAGGA+GGG - chr7_2:18096949-18096968 None:intergenic 50.0%
TCTGCATTGTACAGGTGAGG+AGG - chr7_2:18096950-18096969 None:intergenic 50.0%
CTGTCTGCATTGTACAGGTG+AGG - chr7_2:18096953-18096972 None:intergenic 50.0%
TTGCTTACAATCGAGACCGG+AGG - chr7_2:18096995-18097014 None:intergenic 50.0%
! CAGTGTCGAGTAGTGCTCTA+TGG - chr7_2:18097349-18097368 None:intergenic 50.0%
CTTCTCACAGTCCCAACATC+TGG - chr7_2:18097671-18097690 None:intergenic 50.0%
ACTACTGTTGGGATCTTGGC+AGG + chr7_2:18097843-18097862 Msa1051330:three_prime_UTR 50.0%
CTACTGTTGGGATCTTGGCA+GGG + chr7_2:18097844-18097863 Msa1051330:three_prime_UTR 50.0%
TTGGCAGGGACTTGCAGAAT+GGG + chr7_2:18097858-18097877 Msa1051330:three_prime_UTR 50.0%
GGGACTTGCAGAATGGGAAA+TGG + chr7_2:18097864-18097883 Msa1051330:three_prime_UTR 50.0%
! GTATGGTGATGCAGCTGTAG+AGG + chr7_2:18097947-18097966 Msa1051330:three_prime_UTR 50.0%
CAATGCGCGTGAGATCCTGA+AGG + chr7_2:18094112-18094131 Msa1051330:CDS 55.0%
GAGTCTAGCTGACAGTGCAG+AGG + chr7_2:18094748-18094767 Msa1051330:CDS 55.0%
GGAGGGATCACTGCAGAAAG+CGG + chr7_2:18094850-18094869 Msa1051330:CDS 55.0%
CCTGACGTTGCCTAGACCAT+AGG - chr7_2:18095181-18095200 None:intergenic 55.0%
CCTATGGTCTAGGCAACGTC+AGG + chr7_2:18095178-18095197 Msa1051330:intron 55.0%
TAGGTGAGGTGGGAATCGGT+AGG - chr7_2:18095597-18095616 None:intergenic 55.0%
CTTGGCAGGGACTTGCAGAA+TGG + chr7_2:18097857-18097876 Msa1051330:three_prime_UTR 55.0%
ATGCAGCTGTAGAGGATCCC+AGG + chr7_2:18097955-18097974 Msa1051330:three_prime_UTR 55.0%
CTGTAGAGGATCCCAGGTCT+TGG + chr7_2:18097961-18097980 Msa1051330:three_prime_UTR 55.0%
!! GTATGGTGCTGCAGCTGTAG+AGG + chr7_2:18098126-18098145 Msa1051330:three_prime_UTR 55.0%
GCTGTAGAGGATCCCAGGTT+CGG + chr7_2:18098139-18098158 Msa1051330:three_prime_UTR 55.0%
CTGTAGAGGATCCCAGGTTC+GGG + chr7_2:18098140-18098159 Msa1051330:three_prime_UTR 55.0%
!! ATGTGGGGTGCTGGGTTCTG+AGG + chr7_2:18093059-18093078 Msa1051330:CDS 60.0%
GGGATCACTGCAGAAAGCGG+AGG + chr7_2:18094853-18094872 Msa1051330:CDS 60.0%
GGAATCGGTAGGCTAGGCTC+GGG - chr7_2:18095586-18095605 None:intergenic 60.0%
GGGAATCGGTAGGCTAGGCT+CGG - chr7_2:18095587-18095606 None:intergenic 60.0%
GAGGTGGGAATCGGTAGGCT+AGG - chr7_2:18095592-18095611 None:intergenic 60.0%
CTGCAGCTGTAGAGGATCCC+AGG + chr7_2:18098134-18098153 Msa1051330:three_prime_UTR 60.0%
CAGCAGGCAGTAGCGTCTGC+TGG + chr7_2:18094632-18094651 Msa1051330:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 18092761 18098271 18092761 ID=Msa1051330;Name=Msa1051330
chr7_2 mRNA 18092761 18098271 18092761 ID=Msa1051330-mRNA-1;Parent=Msa1051330;Name=Msa1051330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=59|1|1|1|1|1|4|466|627
chr7_2 exon 18092761 18093264 18092761 ID=Msa1051330-mRNA-1:exon:4082;Parent=Msa1051330-mRNA-1
chr7_2 exon 18093844 18094976 18093844 ID=Msa1051330-mRNA-1:exon:4083;Parent=Msa1051330-mRNA-1
chr7_2 exon 18095937 18096044 18095937 ID=Msa1051330-mRNA-1:exon:4084;Parent=Msa1051330-mRNA-1
chr7_2 exon 18097608 18098271 18097608 ID=Msa1051330-mRNA-1:exon:4085;Parent=Msa1051330-mRNA-1
chr7_2 five_prime_UTR 18092761 18092819 18092761 ID=Msa1051330-mRNA-1:five_prime_utr;Parent=Msa1051330-mRNA-1
chr7_2 CDS 18092820 18093264 18092820 ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2 CDS 18093844 18094976 18093844 ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2 CDS 18095937 18096044 18095937 ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2 CDS 18097608 18097805 18097608 ID=Msa1051330-mRNA-1:cds;Parent=Msa1051330-mRNA-1
chr7_2 three_prime_UTR 18097806 18098271 18097806 ID=Msa1051330-mRNA-1:three_prime_utr;Parent=Msa1051330-mRNA-1
Gene Sequence

>Msa1051330

ATGGAAACTCAAAGTGTTGAAGATAATACCGGTGATGTTGATGTTGGAGGTGTTTCAGATAATGGAGAAGTTATTGTGGATTTTGAAATGAGTGTGGTATATTTCTCTGAGAAAGTTTCAAATTTGAGTATTTTTATGATGAATTTGGAAACTTTGGAAGGTGAATTAGAGGGTTTAGTTTGTGACGAAGAAAACATCGATATGGATTGTGTTTTAAAGGGTTTTGAGTTTGATTTGTTATGTGGGGTGCTGGGTTCTGAGGTTAGAGATTTGGGTTTGTTTTTGGATACACTTCATGCTGAGATTTCTGGTTCTAGAGAGAGAGATTCTTCTTTGAACGATTGGCAAGAGAGGTTGGTTGAATCCGAGGAGCAGTTTTACGAGATTAAGAAACAATCTTTTAGTTTTGAAAGGACTTTGTCTTCTTATAAGAAGGAAGAGAATGGGAATGTTGAAGACGGTGGAAATGTCCAAGAGGATGATCAAACTTCGAATGTAAACAACATGATGAACATGCAAACGACTGAGCAACATAGAAACATTTTGAGGATGCTTGAGAAATCTTTGGCAAATGAAATAGATCTCGAGAAGAATTTCAACGACTCGAAGAAAATTGAAGAAAAGCTAAATCTGAGGATCCTTTCTTTAGAAGACGAGTTAATTCAAACAGAGGAAGAAGCAATCGAAGTTTGGGAAAGATTGTTTGAGGCAGACAATGCGCGTGAGATCCTGAAGGGAATTTCAAATGAAGTGTTGGCTAAACTCAAGCTTTCTCAGTTCAATTTGGTTGGTTTAAGAAAAAGTGAATCCGAGCTTAGAGATAAGCTGGAAACTTCTATAGAGCAATTGAAAAATAGAGACGTTAATTTGGAAAAGATCGAAAGCAGCACAGCTGAAGCAGTTAATTTAGGCGACAAAGTGTGCTCACTTGAGAAGCAGCTACAAGAAACTGAATGCCAGTTGGTGAATGTGAAAGTCTCTGCCAATGAATATCAGCAACAGTATAATGTTGTGTGTTCTCAAGTTAGAGACATGGATAACCTTATCGTAGAATTGAAAGAAAATGCAAAAAATGCAGAAAATCGAGCTAATGCTGCAGAAGTTCAGTGTAAAAAATTGACGGAAACTAATGAAGAACTCAACAAGGAGCTGACTCTTTTAAAAGACTGTGGTATCACATCTGAGAGTGTAGAGTTACTTGAAAGGCAGCTAAAGGAGACTGATTTACAGCTGCAGCAGGCAGTAGCGTCTGCTGGAGCTAGTGAAGAGAAGCAAAAGATGTTGTGTTACACAATTGAAGATATGGAACATGTGATAAAGGATCTTAAGTCAAAGGTTTCTAAAGCCGAGAGTCTAGCTGACAGTGCAGAGGACAAGTGTATCATATTATCTGAATCTAATGCTGATTTAAACGAGGAAGTAAGTTTCTTGAGGAGTAGATTGGAATGCTTGGAGGGATCACTGCAGAAAGCGGAGGAAGCGAAAATGACAACTGCAAAGAATATTGGAAAGCAAACCAAAGTTTTTAAAAGTTTGCTGACACAGTTGGCTTTGGAGAGAGAGCGTCTTAATAAGAAGCTATCCTCCTTAGCAAGCGAGAACAAACTTTTGGCAGTGAAACTGAAGCAAACATATAAGAAGGGTTCTTCTAAAGAAGTTAGTGCGACTTTGTCTTCTGAGCATGAGGGGAACAAGACATGGAAAAATTCATCTGCAAATGATAATGAAGTAAAGTCAGATTCAATACCAGATGTTGGGACTGTGAGAAGAATAGATGCAGGAGTTCTTACTTTTAAGCACTTATTGATATCATTGTTTGTCTTACTCCTTTCAGTTGTGACCTTTCTGTATTTCAAGGACTTGAATGTTGATGTCAGTCTATGA

Protein sequence

>Msa1051330

METQSVEDNTGDVDVGGVSDNGEVIVDFEMSVVYFSEKVSNLSIFMMNLETLEGELEGLVCDEENIDMDCVLKGFEFDLLCGVLGSEVRDLGLFLDTLHAEISGSRERDSSLNDWQERLVESEEQFYEIKKQSFSFERTLSSYKKEENGNVEDGGNVQEDDQTSNVNNMMNMQTTEQHRNILRMLEKSLANEIDLEKNFNDSKKIEEKLNLRILSLEDELIQTEEEAIEVWERLFEADNAREILKGISNEVLAKLKLSQFNLVGLRKSESELRDKLETSIEQLKNRDVNLEKIESSTAEAVNLGDKVCSLEKQLQETECQLVNVKVSANEYQQQYNVVCSQVRDMDNLIVELKENAKNAENRANAAEVQCKKLTETNEELNKELTLLKDCGITSESVELLERQLKETDLQLQQAVASAGASEEKQKMLCYTIEDMEHVIKDLKSKVSKAESLADSAEDKCIILSESNADLNEEVSFLRSRLECLEGSLQKAEEAKMTTAKNIGKQTKVFKSLLTQLALERERLNKKLSSLASENKLLAVKLKQTYKKGSSKEVSATLSSEHEGNKTWKNSSANDNEVKSDSIPDVGTVRRIDAGVLTFKHLLISLFVLLLSVVTFLYFKDLNVDVSL*