AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0923780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0923780 MtrunA17_Chr6g0482721 98.611 216 3 0 1 216 1 216 5.60e-160 440
Msa0923780 MtrunA17_Chr8g0392931 76.303 211 49 1 5 214 7 217 7.52e-111 316
Msa0923780 MtrunA17_Chr4g0040781 57.820 211 85 2 6 214 7 215 3.19e-88 259
Msa0923780 MtrunA17_Chr2g0283131 57.346 211 86 2 6 214 7 215 1.06e-87 258
Msa0923780 MtrunA17_Chr4g0046261 57.346 211 86 2 6 214 7 215 2.26e-87 257
Msa0923780 MtrunA17_Chr2g0325091 58.095 210 85 3 6 214 5 212 1.05e-86 255
Msa0923780 MtrunA17_Chr2g0315551 57.416 209 89 0 6 214 7 215 6.99e-86 253
Msa0923780 MtrunA17_Chr3g0112681 52.804 214 101 0 1 214 1 214 5.53e-81 241
Msa0923780 MtrunA17_Chr4g0032201 53.953 215 96 3 1 214 1 213 3.28e-80 238
Msa0923780 MtrunA17_Chr2g0319951 55.714 210 92 1 6 214 7 216 1.09e-79 237
Msa0923780 MtrunA17_Chr2g0276941 53.810 210 96 1 6 214 9 218 5.05e-78 233
Msa0923780 MtrunA17_Chr8g0381841 53.488 215 92 4 6 214 11 223 8.54e-76 228
Msa0923780 MtrunA17_Chr3g0123821 51.415 212 100 1 6 214 10 221 2.19e-75 226
Msa0923780 MtrunA17_Chr7g0231131 49.767 215 104 2 5 216 8 221 3.27e-72 218
Msa0923780 MtrunA17_Chr1g0174281 48.372 215 106 2 5 214 8 222 1.38e-70 214
Msa0923780 MtrunA17_Chr8g0346421 49.074 216 100 2 5 214 19 230 2.72e-70 214
Msa0923780 MtrunA17_Chr7g0275991 49.074 216 98 2 7 214 15 226 5.08e-70 213
Msa0923780 MtrunA17_Chr1g0189361 58.960 173 71 0 10 182 12 184 5.74e-69 210
Msa0923780 MtrunA17_Chr8g0351861 50.455 220 93 4 7 214 11 226 1.27e-66 204
Msa0923780 MtrunA17_Chr7g0214241 56.395 172 75 0 11 182 14 185 2.04e-65 201
Msa0923780 MtrunA17_Chr7g0234201 54.974 191 81 1 11 196 12 202 3.39e-65 200
Msa0923780 MtrunA17_Chr6g0458081 54.878 164 74 0 10 173 4 167 5.74e-58 182
Msa0923780 MtrunA17_Chr2g0290891 53.293 167 78 0 11 177 5 171 3.87e-56 177
Msa0923780 MtrunA17_Chr8g0349711 49.206 189 91 2 11 194 5 193 2.17e-55 175
Msa0923780 MtrunA17_Chr2g0276931 44.390 205 105 1 10 214 7 202 7.32e-55 174
Msa0923780 MtrunA17_Chr4g0055651 49.462 186 92 2 5 189 1 185 1.05e-54 173
Msa0923780 MtrunA17_Chr7g0250531 47.120 191 99 1 10 198 6 196 5.85e-54 171
Msa0923780 MtrunA17_Chr8g0335471 49.153 177 90 0 5 181 1 177 1.05e-53 171
Msa0923780 MtrunA17_Chr8g0349681 52.874 174 77 1 11 184 383 551 6.51e-53 179
Msa0923780 MtrunA17_Chr8g0349681 46.739 184 96 1 11 192 174 357 9.50e-50 170
Msa0923780 MtrunA17_Chr8g0349681 50.943 159 78 0 11 169 12 170 2.87e-47 163
Msa0923780 MtrunA17_Chr1g0182321 41.262 206 116 2 10 214 13 214 1.01e-50 164
Msa0923780 MtrunA17_Chr1g0182301 40.777 206 117 2 10 214 13 214 3.10e-50 162
Msa0923780 MtrunA17_Chr8g0384311 49.425 174 85 3 7 178 8 180 7.56e-50 161
Msa0923780 MtrunA17_Chr1g0212521 41.429 210 110 4 10 214 13 214 7.99e-50 161
Msa0923780 MtrunA17_Chr7g0263071 43.316 187 105 1 10 195 13 199 5.03e-49 159
Msa0923780 MtrunA17_Chr4g0030911 47.879 165 85 1 10 173 13 177 9.81e-49 158
Msa0923780 MtrunA17_Chr1g0159481 50.292 171 82 3 10 178 15 184 1.13e-48 158
Msa0923780 MtrunA17_Chr3g0109721 47.500 160 84 0 14 173 12 171 8.39e-48 155
Msa0923780 MtrunA17_Chr5g0433561 46.250 160 86 0 14 173 12 171 3.32e-47 154
Msa0923780 MtrunA17_Chr3g0130271 47.514 181 91 4 1 178 1 180 2.21e-46 152
Msa0923780 MtrunA17_Chr7g0265001 44.444 207 106 4 10 214 14 213 1.50e-44 147
Msa0923780 MtrunA17_Chr2g0327911 44.118 170 93 2 6 173 9 178 3.18e-44 147
Msa0923780 MtrunA17_Chr8g0390561 39.429 175 106 0 14 188 11 185 4.01e-43 144
Msa0923780 MtrunA17_Chr1g0199331 44.099 161 89 1 14 173 33 193 7.81e-43 143
Msa0923780 MtrunA17_Chr1g0197331 47.674 172 87 3 10 178 13 184 7.84e-43 143
Msa0923780 MtrunA17_Chr1g0180291 43.478 207 107 5 10 214 12 210 1.24e-42 142
Msa0923780 MtrunA17_Chr3g0123971 37.931 174 108 0 13 186 10 183 5.10e-42 141
Msa0923780 MtrunA17_Chr8g0382221 37.288 177 109 1 13 187 10 186 6.36e-41 138
Msa0923780 MtrunA17_Chr5g0400131 40.909 154 91 0 13 166 10 163 1.79e-39 134
Msa0923780 MtrunA17_Chr4g0055081 39.610 154 93 0 13 166 10 163 3.78e-39 134
Msa0923780 MtrunA17_Chr2g0331691 38.690 168 95 4 12 172 10 176 8.71e-33 117
Msa0923780 MtrunA17_Chr8g0383261 39.877 163 91 3 12 167 12 174 1.15e-32 117
Msa0923780 MtrunA17_Chr6g0466301 37.576 165 96 3 12 169 8 172 1.18e-32 117
Msa0923780 MtrunA17_Chr6g0465491 37.576 165 96 3 12 169 8 172 1.18e-32 117
Msa0923780 MtrunA17_Chr4g0034871 37.037 162 95 3 12 166 8 169 1.29e-32 117
Msa0923780 MtrunA17_Chr1g0201121 37.423 163 95 3 12 167 8 170 6.96e-31 112
Msa0923780 MtrunA17_Chr4g0004661 37.037 162 95 3 12 166 64 225 1.01e-30 113
Msa0923780 MtrunA17_Chr3g0138121 33.908 174 111 4 1 173 1 171 5.49e-24 95.1
Msa0923780 MtrunA17_Chr3g0138101 33.908 174 111 4 1 173 1 171 5.61e-24 95.1
Msa0923780 MtrunA17_Chr3g0138111 33.908 174 111 4 1 173 1 171 6.57e-24 94.7
Msa0923780 MtrunA17_Chr6g0466161 36.486 148 87 3 27 167 5 152 2.28e-23 93.2
Msa0923780 MtrunA17_Chr6g0465471 36.486 148 87 3 27 167 5 152 2.36e-23 93.2
Msa0923780 MtrunA17_Chr2g0331841 56.897 58 25 0 81 138 2 59 7.17e-17 72.8
Msa0923780 MtrunA17_Chr4g0046211 33.871 124 79 3 12 134 6 127 1.07e-16 73.9
Msa0923780 MtrunA17_Chr2g0325101 34.677 124 78 3 12 134 6 127 1.22e-16 75.1
Msa0923780 MtrunA17_Chr6g0466431 37.624 101 54 1 12 112 8 99 1.37e-16 72.4
Msa0923780 MtrunA17_Chr6g0465611 37.624 101 54 1 12 112 8 99 1.37e-16 72.4
Msa0923780 MtrunA17_Chr4g0037021 32.667 150 91 4 12 160 6 146 1.99e-16 74.3
Msa0923780 MtrunA17_Chr6g0486041 27.461 193 126 5 12 192 6 196 2.84e-16 74.3
Msa0923780 MtrunA17_Chr5g0405791 33.871 124 79 3 12 134 6 127 3.31e-16 73.9
Msa0923780 MtrunA17_Chr8g0371501 30.303 165 102 5 12 172 6 161 6.28e-16 73.2
Msa0923780 MtrunA17_Chr3g0117931 28.977 176 108 6 12 172 8 181 1.98e-15 72.0
Msa0923780 MtrunA17_Chr1g0178291 34.395 157 93 5 17 170 433 582 1.69e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0923780 AT1G73640.1 64.192 229 66 3 3 215 4 232 2.85e-103 298
Msa0923780 AT1G18200.1 64.444 225 68 3 3 215 4 228 4.64e-103 297
Msa0923780 AT5G60860.1 56.872 211 87 2 6 214 7 215 8.29e-88 258
Msa0923780 AT1G16920.1 58.537 205 84 1 10 214 11 214 3.52e-86 254
Msa0923780 AT4G18430.1 57.277 213 87 2 6 216 7 217 1.23e-85 253
Msa0923780 AT5G45750.1 57.895 209 87 1 6 214 7 214 6.82e-85 251
Msa0923780 AT2G33870.1 57.005 207 86 2 10 214 11 216 2.37e-84 249
Msa0923780 AT3G15060.1 55.924 211 89 2 6 214 7 215 4.67e-84 249
Msa0923780 AT1G28550.1 56.039 207 88 2 10 214 11 216 1.02e-83 248
Msa0923780 AT1G06400.1 57.143 210 87 2 6 214 7 214 2.12e-82 244
Msa0923780 AT1G09630.1 52.804 214 101 0 1 214 1 214 4.13e-82 244
Msa0923780 AT4G18800.1 56.459 209 88 1 6 214 7 212 1.63e-81 242
Msa0923780 AT1G07410.1 54.206 214 96 2 1 214 1 212 8.82e-80 238
Msa0923780 AT5G47960.1 52.113 213 99 1 5 214 8 220 1.55e-75 227
Msa0923780 AT5G65270.1 53.738 214 92 3 7 214 12 224 4.18e-75 226
Msa0923780 AT4G39990.1 52.857 210 95 2 8 214 13 221 4.72e-75 226
Msa0923780 AT3G46830.1 52.558 215 101 1 1 214 1 215 2.13e-74 224
Msa0923780 AT3G46830.2 52.558 215 101 1 1 214 1 215 2.13e-74 224
Msa0923780 AT3G12160.1 52.113 213 98 2 5 214 8 219 6.92e-74 223
Msa0923780 AT5G59150.1 51.852 216 101 3 1 214 1 215 2.33e-73 221
Msa0923780 AT5G47520.1 53.774 212 95 2 6 214 8 219 1.27e-70 215
Msa0923780 AT2G31680.1 50.725 207 100 1 10 214 10 216 1.05e-66 205
Msa0923780 AT2G43130.1 49.533 214 106 1 1 214 1 212 8.76e-66 202
Msa0923780 AT1G01200.1 47.032 219 104 4 4 213 20 235 1.30e-65 202
Msa0923780 AT1G05810.1 48.826 213 94 3 10 214 10 215 5.68e-65 200
Msa0923780 AT3G07410.1 50.971 206 100 1 10 214 10 215 6.01e-65 200
Msa0923780 AT1G05810.2 48.826 213 94 3 10 214 56 261 1.70e-64 201
Msa0923780 AT4G35860.1 46.860 207 108 1 10 214 4 210 4.02e-59 185
Msa0923780 AT4G17170.1 45.631 206 110 1 11 214 5 210 2.28e-56 178
Msa0923780 AT4G17160.1 46.602 206 102 3 11 214 5 204 2.03e-55 176
Msa0923780 AT1G02130.1 48.588 177 91 0 5 181 1 177 4.06e-54 172
Msa0923780 AT5G47200.1 44.076 211 106 4 5 214 1 200 1.86e-53 170
Msa0923780 AT3G11730.1 46.073 191 103 0 10 200 6 196 3.33e-53 170
Msa0923780 AT4G17530.1 44.076 211 106 4 5 214 1 200 3.46e-53 170
Msa0923780 AT5G03520.1 42.512 207 114 2 10 215 13 215 1.01e-49 161
Msa0923780 AT3G53610.2 41.429 210 110 3 10 214 13 214 1.46e-49 161
Msa0923780 AT3G53610.3 41.429 210 110 3 10 214 13 214 1.46e-49 161
Msa0923780 AT3G53610.1 41.429 210 110 3 10 214 13 214 1.46e-49 161
Msa0923780 AT5G59840.1 41.748 206 115 2 10 214 13 214 1.79e-49 160
Msa0923780 AT1G43890.3 50.877 171 81 3 10 178 11 180 4.61e-49 159
Msa0923780 AT1G43890.1 50.877 171 81 3 10 178 11 180 4.61e-49 159
Msa0923780 AT1G43890.2 50.877 171 81 3 10 178 11 180 4.61e-49 159
Msa0923780 AT3G46060.2 41.748 206 115 2 10 214 13 214 1.35e-48 158
Msa0923780 AT3G46060.3 41.748 206 115 2 10 214 13 214 1.35e-48 158
Msa0923780 AT3G46060.1 41.748 206 115 2 10 214 13 214 1.35e-48 158
Msa0923780 AT5G45130.1 42.935 184 99 1 14 197 12 189 2.59e-48 157
Msa0923780 AT5G59150.2 49.080 163 80 3 54 214 3 164 6.69e-48 155
Msa0923780 AT3G09900.1 40.777 206 118 2 10 214 13 215 1.30e-47 156
Msa0923780 AT5G45130.2 42.857 182 98 1 16 197 22 197 1.84e-47 155
Msa0923780 AT4G19640.1 41.758 182 100 1 14 195 12 187 8.60e-47 153
Msa0923780 AT5G03530.2 43.961 207 106 5 10 214 11 209 4.69e-44 147
Msa0923780 AT5G03530.1 43.961 207 106 5 10 214 11 209 4.69e-44 147
Msa0923780 AT4G39890.1 39.881 168 100 1 13 179 10 177 6.12e-43 144
Msa0923780 AT3G54840.1 45.860 157 84 1 14 169 35 191 2.82e-42 142
Msa0923780 AT4G35860.2 44.785 163 88 1 54 214 2 164 3.05e-42 140
Msa0923780 AT3G54840.3 45.806 155 83 1 16 169 3 157 3.52e-42 140
Msa0923780 AT3G54840.2 46.104 154 82 1 14 166 35 188 4.75e-42 141
Msa0923780 AT2G22290.1 36.994 173 109 0 13 185 10 182 1.21e-40 138
Msa0923780 AT5G10260.1 40.909 154 91 0 13 166 10 163 1.42e-39 135
Msa0923780 AT3G09910.3 46.784 171 88 3 10 178 11 180 8.88e-39 133
Msa0923780 AT3G09910.1 46.784 171 88 3 10 178 11 180 8.88e-39 133
Msa0923780 AT3G09910.2 46.784 171 88 3 10 178 11 180 8.88e-39 133
Msa0923780 AT5G64990.1 33.990 203 126 2 13 213 8 204 1.82e-38 132
Msa0923780 AT3G09910.5 44.809 183 93 4 10 190 11 187 4.64e-38 131
Msa0923780 AT3G09910.4 44.809 183 93 4 10 190 11 187 4.64e-38 131
Msa0923780 AT2G44610.1 39.610 154 93 0 13 166 10 163 6.09e-38 131
Msa0923780 AT4G19640.3 46.565 131 70 0 14 144 12 142 2.05e-37 129
Msa0923780 AT4G19640.2 46.825 126 67 0 14 139 12 137 6.53e-37 126
Msa0923780 AT5G03520.2 38.824 170 99 2 47 215 40 205 1.03e-36 128
Msa0923780 AT5G64990.2 32.857 210 126 3 13 213 8 211 1.25e-35 125
Msa0923780 AT1G22740.1 39.645 169 94 5 12 173 8 175 9.39e-34 120
Msa0923780 AT1G52280.1 37.500 168 97 4 12 172 8 174 1.38e-32 117
Msa0923780 AT3G18820.1 37.654 162 94 3 12 166 8 169 4.48e-32 115
Msa0923780 AT4G09720.1 36.970 165 97 4 12 169 8 172 1.29e-31 114
Msa0923780 AT1G49300.2 36.527 167 99 3 12 171 8 174 1.50e-31 114
Msa0923780 AT1G49300.1 36.527 167 99 3 12 171 8 174 1.50e-31 114
Msa0923780 AT4G09720.4 36.471 170 96 4 12 169 8 177 5.59e-31 113
Msa0923780 AT2G21880.1 35.152 165 100 3 12 169 9 173 1.88e-30 112
Msa0923780 AT4G09720.3 35.227 176 96 3 12 169 8 183 3.82e-30 111
Msa0923780 AT3G16100.1 36.310 168 99 4 12 172 8 174 4.27e-30 110
Msa0923780 AT5G39620.1 37.126 167 98 3 13 172 6 172 8.05e-30 110
Msa0923780 AT5G46025.1 47.170 106 55 1 74 178 6 111 9.40e-28 102
Msa0923780 AT5G55080.1 31.677 161 107 3 13 173 14 171 1.99e-24 96.7
Msa0923780 AT5G55190.1 33.908 174 111 4 1 173 1 171 7.82e-24 95.1
Msa0923780 AT5G20020.1 33.908 174 111 4 1 173 1 171 8.08e-24 95.1
Msa0923780 AT5G20010.1 33.908 174 111 4 1 173 1 171 8.60e-24 94.7
Msa0923780 AT2G21880.4 29.545 176 109 4 29 197 1 168 2.61e-22 90.1
Msa0923780 AT2G21880.3 29.545 176 109 4 29 197 1 168 2.61e-22 90.1
Msa0923780 AT2G44690.1 32.474 194 113 6 12 193 18 205 3.52e-22 90.5
Msa0923780 AT4G09720.6 37.037 135 78 4 42 169 4 138 4.95e-22 89.0
Msa0923780 AT4G09720.5 37.037 135 78 4 42 169 4 138 4.95e-22 89.0
Msa0923780 AT4G09720.2 37.037 135 78 4 42 169 4 138 4.95e-22 89.0
Msa0923780 AT2G21880.2 30.303 165 100 4 12 169 9 165 1.08e-20 86.3
Msa0923780 AT4G35020.1 32.727 165 98 5 12 172 6 161 1.43e-17 77.8
Msa0923780 AT4G35020.2 32.727 165 98 5 12 172 6 161 1.43e-17 77.8
Msa0923780 AT4G35020.3 32.727 165 98 5 12 172 6 161 1.43e-17 77.8
Msa0923780 AT5G45970.1 33.333 129 83 3 12 139 6 132 9.22e-16 73.2
Msa0923780 AT1G20090.1 34.677 124 78 3 12 134 5 126 1.04e-15 72.8
Msa0923780 AT1G75840.1 33.871 124 79 3 12 134 6 127 1.53e-15 72.4
Msa0923780 AT2G17800.2 29.167 168 106 5 12 175 6 164 2.00e-15 72.0
Msa0923780 AT2G17800.1 29.167 168 106 5 12 175 6 164 2.00e-15 72.0
Msa0923780 AT4G28950.1 33.613 119 76 3 12 129 6 122 2.09e-15 72.4
Msa0923780 AT3G51300.1 33.607 122 78 3 14 134 8 127 2.48e-15 72.0
Msa0923780 AT4G35950.1 33.065 124 80 3 12 134 6 127 2.69e-15 71.6
Msa0923780 AT5G62880.2 28.000 175 113 5 12 182 8 173 1.51e-14 69.7
Msa0923780 AT4G35020.4 36.842 114 69 3 14 126 8 119 1.83e-14 68.6
Msa0923780 AT4G35020.5 36.842 114 69 3 14 126 8 119 1.83e-14 68.6
Msa0923780 AT3G48040.2 32.258 124 81 3 12 134 8 129 1.96e-14 68.9
Msa0923780 AT3G48040.1 32.258 124 81 3 12 134 8 129 2.06e-14 69.7
Msa0923780 AT5G62880.1 29.655 145 92 4 12 155 8 143 4.79e-14 68.9
Msa0923780 AT4G08190.1 43.750 64 33 1 103 166 67 127 5.46e-11 58.5

Find 52 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTTCTTTGGAATTAA+AGG 0.161579 6_2:-64545028 Msa0923780:five_prime_UTR
CCCTATTAGTCTTCTTTCTT+TGG 0.174362 6_2:-64545037 Msa0923780:five_prime_UTR
CTCTTCAAAACCGTTCTAAT+TGG 0.205120 6_2:-64544890 Msa0923780:CDS
ACCGTTCTAATTGGAGATTC+TGG 0.213565 6_2:-64544881 Msa0923780:CDS
AGCTCATCAAAGCACAAATA+TGG 0.246432 6_2:-64544748 Msa0923780:CDS
AAAATGAATGGGACAAAATT+AGG 0.248904 6_2:-64541168 Msa0923780:CDS
TCCAAAGAAAGAAGACTAAT+AGG 0.264491 6_2:+64545036 None:intergenic
GCTTAGAGATAAATTAATTA+AGG 0.288422 6_2:-64544980 Msa0923780:five_prime_UTR
CCAACCATAGGTGTGGAATT+TGG 0.291621 6_2:-64544797 Msa0923780:CDS
TTACATGAGCTTAGAGAATA+TGG 0.310652 6_2:-64541402 Msa0923780:CDS
CTTCTTTCTTTGGAATTAAA+GGG 0.321247 6_2:-64545027 Msa0923780:five_prime_UTR
AAACAAGTCAATTGTTGTTA+TGG 0.321662 6_2:-64541096 Msa0923780:CDS
ACAAAATTAGGTCTTCCTAA+TGG 0.326555 6_2:-64541156 Msa0923780:CDS
CATATATTATATATTATATA+TGG 0.341325 6_2:-64544942 Msa0923780:exon
TATCATAAGCCATAAAAGTT+TGG 0.376145 6_2:-64541196 Msa0923780:CDS
CAAAATTAGGTCTTCCTAAT+GGG 0.382967 6_2:-64541155 Msa0923780:CDS
ATATGAATTTCCTTCCCATT+AGG 0.386629 6_2:+64541141 None:intergenic
TCATACTATAGAGGAGCATT+GGG 0.412063 6_2:-64541483 Msa0923780:CDS
CTAATTGGAGATTCTGGAGT+TGG 0.427347 6_2:-64544875 Msa0923780:CDS
TTGAGAAAGAAGAAGGAAAA+GGG 0.430619 6_2:-64541317 Msa0923780:CDS
TTCCACACCTATGGTTGGCT+TGG 0.432211 6_2:+64544802 None:intergenic
GGAAATCAAACCTTATTTCA+AGG 0.434954 6_2:-64544853 Msa0923780:CDS
GTTGAGAAAGAAGAAGGAAA+AGG 0.437694 6_2:-64541318 Msa0923780:CDS
CCAAAGAAAGAAGACTAATA+GGG 0.455350 6_2:+64545037 None:intergenic
CTCATACTATAGAGGAGCAT+TGG 0.460380 6_2:-64541484 Msa0923780:CDS
TAATTGGAGATTCTGGAGTT+GGG 0.471690 6_2:-64544874 Msa0923780:CDS
GCTCATCAAAGCACAAATAT+GGG 0.473052 6_2:-64544747 Msa0923780:CDS
AGGGAGGTTGAGAAAGAAGA+AGG 0.473377 6_2:-64541324 Msa0923780:CDS
GTAACCAAATTCCACACCTA+TGG 0.475678 6_2:+64544793 None:intergenic
AATCTGATTTGAGTCAATCA+AGG 0.488203 6_2:-64541344 Msa0923780:CDS
AGTTTGGAAGATAAAATGAA+TGG 0.501277 6_2:-64541180 Msa0923780:CDS
ATCACAAGCTCATACTATAG+AGG 0.512214 6_2:-64541492 Msa0923780:CDS
ATTAAAGGGTATTACAAAAG+AGG 0.515732 6_2:-64545013 Msa0923780:five_prime_UTR
AAAGGGTTTGCAGAAAGAGA+AGG 0.525911 6_2:-64541300 Msa0923780:CDS
GTTTGGAAGATAAAATGAAT+GGG 0.531416 6_2:-64541179 Msa0923780:CDS
TATTTGATACATCAAGCTCA+TGG 0.531896 6_2:-64540972 Msa0923780:three_prime_UTR
TTTGCAAAATTTAAATGTTG+AGG 0.537036 6_2:-64541253 Msa0923780:CDS
TGCTAGTTTATGACATAACT+AGG 0.556603 6_2:-64541455 Msa0923780:CDS
CTTGATTCCAAGCCAACCAT+AGG 0.558383 6_2:-64544809 Msa0923780:CDS
CCAAATTCCACACCTATGGT+TGG 0.560911 6_2:+64544797 None:intergenic
ATTTGGTTACAAGAACATCA+AGG 0.563030 6_2:-64544780 Msa0923780:CDS
TCCAGAATCTCCAATTAGAA+CGG 0.576110 6_2:+64544880 None:intergenic
ATCTGATTTGAGTCAATCAA+GGG 0.595502 6_2:-64541343 Msa0923780:CDS
ATTAGGTCTTCCTAATGGGA+AGG 0.598159 6_2:-64541151 Msa0923780:CDS
GCACAAATATGGGACACTGC+CGG 0.604045 6_2:-64544737 Msa0923780:CDS
GGGACACTGCCGGCCAAGAG+AGG 0.610199 6_2:-64544727 Msa0923780:intron
TTCCAAGCCAACCATAGGTG+TGG 0.621032 6_2:-64544804 Msa0923780:CDS
ATACTATAGAGGAGCATTGG+GGG 0.641465 6_2:-64541481 Msa0923780:CDS
TGATTTGAGTCAATCAAGGG+AGG 0.654426 6_2:-64541340 Msa0923780:CDS
AGAATATGGAAATGAAGACA+TGG 0.654561 6_2:-64541388 Msa0923780:CDS
CATACTATAGAGGAGCATTG+GGG 0.659725 6_2:-64541482 Msa0923780:CDS
AAGAAAGAAGACTAATAGGG+AGG 0.671639 6_2:+64545040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAACAAAAATATCATT+TGG - chr6_2:64540972-64540991 Msa0923780:three_prime_UTR 10.0%
!! TAAAAATATTCAAAAGTTTA+AGG - chr6_2:64542955-64542974 Msa0923780:intron 10.0%
!! AATTAGTACATAAATTAAAT+TGG - chr6_2:64543327-64543346 Msa0923780:intron 10.0%
!!! AAAATAAAAATCATTTTGAT+GGG + chr6_2:64544422-64544441 None:intergenic 10.0%
!!! TAAAATAAAAATCATTTTGA+TGG + chr6_2:64544423-64544442 None:intergenic 10.0%
!!! CTTTTGTTAATATAAAAAAA+TGG - chr6_2:64544627-64544646 Msa0923780:intron 10.0%
!!! TTGTATTATTTATTTTACTT+TGG - chr6_2:64545052-64545071 Msa0923780:five_prime_UTR 10.0%
!!! TGTATTATTTATTTTACTTT+GGG - chr6_2:64545053-64545072 Msa0923780:five_prime_UTR 10.0%
!!! ATGTATCCTTTTATTTAAAT+AGG - chr6_2:64541385-64541404 Msa0923780:CDS 15.0%
!!! TGTATCCTTTTATTTAAATA+GGG - chr6_2:64541386-64541405 Msa0923780:CDS 15.0%
!!! CCTTTAGTTTTATTTATTTA+CGG + chr6_2:64542126-64542145 None:intergenic 15.0%
!! TAAATTATAAGCTTGATATT+AGG - chr6_2:64542399-64542418 Msa0923780:intron 15.0%
!!! TAATTTTTCGTCAAAATAAA+AGG - chr6_2:64542430-64542449 Msa0923780:intron 15.0%
!! ACTATTTGCATATAATAAAA+TGG - chr6_2:64542892-64542911 Msa0923780:intron 15.0%
!!! ACAAAAAATAAATGCTTTTT+TGG - chr6_2:64543202-64543221 Msa0923780:intron 15.0%
!! CTAAAAAAAAAAACTTATGA+GGG - chr6_2:64544290-64544309 Msa0923780:intron 15.0%
!!! TAAATATGTGTACAATTTTA+TGG - chr6_2:64544522-64544541 Msa0923780:intron 15.0%
!! GCTTAGAGATAAATTAATTA+AGG - chr6_2:64541072-64541091 Msa0923780:three_prime_UTR 20.0%
!! AATATGATAGATAAAATTGG+AGG + chr6_2:64541557-64541576 None:intergenic 20.0%
!! CTGAATATGATAGATAAAAT+TGG + chr6_2:64541560-64541579 None:intergenic 20.0%
!!! TTTTATCTATCATATTCAGT+CGG - chr6_2:64541561-64541580 Msa0923780:intron 20.0%
!! AAACATATGAAACACATATA+CGG - chr6_2:64541625-64541644 Msa0923780:intron 20.0%
!!! AGATCTTTTCAAATTATTGA+CGG + chr6_2:64541692-64541711 None:intergenic 20.0%
!! CATAAAATGTTTATGAAACA+CGG + chr6_2:64541806-64541825 None:intergenic 20.0%
!! CCGTAAATAAATAAAACTAA+AGG - chr6_2:64542123-64542142 Msa0923780:intron 20.0%
!! CAAAAACTAATTAAAAGTCA+GGG - chr6_2:64542266-64542285 Msa0923780:intron 20.0%
!! TCTATAACTAGAATAATTTC+AGG - chr6_2:64542343-64542362 Msa0923780:intron 20.0%
!! ATTCAGTCAAAAAGAAAATA+TGG - chr6_2:64542514-64542533 Msa0923780:intron 20.0%
!! TTCTTATATCAATATCAACA+CGG - chr6_2:64542541-64542560 Msa0923780:intron 20.0%
!!! TTTTTGCATTGAAAATTGTA+CGG + chr6_2:64542708-64542727 None:intergenic 20.0%
!!! TTTTTTTCTCTTTTTTTACG+TGG - chr6_2:64543389-64543408 Msa0923780:intron 20.0%
!! TTTATTAAATTGAACTCAAG+CGG - chr6_2:64543492-64543511 Msa0923780:intron 20.0%
!! TAAAAAAAACCTAGTACATA+TGG - chr6_2:64543650-64543669 Msa0923780:intron 20.0%
!!! ATTATTGAGTTATTGATTGT+GGG + chr6_2:64544101-64544120 None:intergenic 20.0%
!!! TGTCATTTAATTTCAATGAT+TGG - chr6_2:64544248-64544267 Msa0923780:intron 20.0%
!!! CCTCATAAGTTTTTTTTTTT+AGG + chr6_2:64544292-64544311 None:intergenic 20.0%
!! CCTAAAAAAAAAAACTTATG+AGG - chr6_2:64544289-64544308 Msa0923780:intron 20.0%
!! TAAGTAATGATCATAATTGA+AGG + chr6_2:64544477-64544496 None:intergenic 20.0%
!! TTTGCAAAATTTAAATGTTG+AGG - chr6_2:64544799-64544818 Msa0923780:CDS 20.0%
!!! TTTTATCTTCCAAACTTTTA+TGG + chr6_2:64544868-64544887 None:intergenic 20.0%
!!! TCTTCTTTCTTTGGAATTAA+AGG - chr6_2:64541024-64541043 Msa0923780:three_prime_UTR 25.0%
!!! CTTCTTTCTTTGGAATTAAA+GGG - chr6_2:64541025-64541044 Msa0923780:three_prime_UTR 25.0%
!!! ATTAAAGGGTATTACAAAAG+AGG - chr6_2:64541039-64541058 Msa0923780:three_prime_UTR 25.0%
!! CTTTTGTAAACCTTGAAATA+AGG + chr6_2:64541212-64541231 None:intergenic 25.0%
! AAAAAAAAAGTTACCTCTCT+TGG + chr6_2:64541341-64541360 None:intergenic 25.0%
! AGATGCCCTATTTAAATAAA+AGG + chr6_2:64541394-64541413 None:intergenic 25.0%
!!! GTTTTGTTGTTTTGTTTCAA+TGG - chr6_2:64541475-64541494 Msa0923780:CDS 25.0%
! TAGTGAATATTCAAGAGATA+TGG + chr6_2:64541598-64541617 None:intergenic 25.0%
! ATTTCAAGATATCGTTATCA+AGG + chr6_2:64542223-64542242 None:intergenic 25.0%
! GCAAAAACTAATTAAAAGTC+AGG - chr6_2:64542265-64542284 Msa0923780:intron 25.0%
! TAACCAAACTTATACTCAAT+TGG + chr6_2:64542295-64542314 None:intergenic 25.0%
!!! GTATAAGTTTGGTTATTTTG+TGG - chr6_2:64542300-64542319 Msa0923780:intron 25.0%
! ATAACTAGAATAATTTCAGG+TGG - chr6_2:64542346-64542365 Msa0923780:intron 25.0%
!! TAACTAGAATAATTTCAGGT+GGG - chr6_2:64542347-64542366 Msa0923780:intron 25.0%
!!! TATACCGTGTTGATTTTTTT+GGG + chr6_2:64542579-64542598 None:intergenic 25.0%
!!! ATATACCGTGTTGATTTTTT+TGG + chr6_2:64542580-64542599 None:intergenic 25.0%
! ACGTGTTACATAATCAATAA+TGG + chr6_2:64542783-64542802 None:intergenic 25.0%
! GCAAATAGTGTTTACATATA+GGG + chr6_2:64542881-64542900 None:intergenic 25.0%
! TGCAAATAGTGTTTACATAT+AGG + chr6_2:64542882-64542901 None:intergenic 25.0%
! AAAAGTTTAAGGATTATCCT+TGG - chr6_2:64542966-64542985 Msa0923780:intron 25.0%
! ACCATTAATTAGCTATGTAT+TGG - chr6_2:64543099-64543118 Msa0923780:intron 25.0%
! TGTCAAGATGAAAGAAAATT+TGG + chr6_2:64543236-64543255 None:intergenic 25.0%
! TGATGAACTAAAATATAGTG+AGG + chr6_2:64543366-64543385 None:intergenic 25.0%
!! TAAAAATTAAACTCGGGTTT+TGG + chr6_2:64543547-64543566 None:intergenic 25.0%
! TTCCACTAAAAATTAAACTC+GGG + chr6_2:64543553-64543572 None:intergenic 25.0%
! GTTCCACTAAAAATTAAACT+CGG + chr6_2:64543554-64543573 None:intergenic 25.0%
!! TTAGTGGAACAATTTTTATC+AGG - chr6_2:64543564-64543583 Msa0923780:intron 25.0%
!! CATATTTTTCCATATGTACT+AGG + chr6_2:64543662-64543681 None:intergenic 25.0%
!! TTATTGAGTTATTGATTGTG+GGG + chr6_2:64544100-64544119 None:intergenic 25.0%
!! GATTATTGAGTTATTGATTG+TGG + chr6_2:64544102-64544121 None:intergenic 25.0%
!!! TAATCTATTTTTGTGTGAAC+CGG + chr6_2:64544387-64544406 None:intergenic 25.0%
!! AAGAGAAGGTTTATGTTTTA+TGG - chr6_2:64544766-64544785 Msa0923780:CDS 25.0%
!! TTTTATGGCTTATGATATCA+TGG + chr6_2:64544853-64544872 None:intergenic 25.0%
! TATCATAAGCCATAAAAGTT+TGG - chr6_2:64544856-64544875 Msa0923780:CDS 25.0%
! AGTTTGGAAGATAAAATGAA+TGG - chr6_2:64544872-64544891 Msa0923780:CDS 25.0%
! GTTTGGAAGATAAAATGAAT+GGG - chr6_2:64544873-64544892 Msa0923780:CDS 25.0%
! AAAATGAATGGGACAAAATT+AGG - chr6_2:64544884-64544903 Msa0923780:CDS 25.0%
!! AAACAAGTCAATTGTTGTTA+TGG - chr6_2:64544956-64544975 Msa0923780:five_prime_UTR 25.0%
CCAAAGAAAGAAGACTAATA+GGG + chr6_2:64541018-64541037 None:intergenic 30.0%
TCCAAAGAAAGAAGACTAAT+AGG + chr6_2:64541019-64541038 None:intergenic 30.0%
! GGAAATCAAACCTTATTTCA+AGG - chr6_2:64541199-64541218 Msa0923780:CDS 30.0%
ATTTGGTTACAAGAACATCA+AGG - chr6_2:64541272-64541291 Msa0923780:CDS 30.0%
GATGTTGAAGACAAGAAAAA+GGG + chr6_2:64541446-64541465 None:intergenic 30.0%
AGATGTTGAAGACAAGAAAA+AGG + chr6_2:64541447-64541466 None:intergenic 30.0%
AAACTTGGGTTACGTAAATT+TGG + chr6_2:64541509-64541528 None:intergenic 30.0%
TCCAATAAGGATTCAAACTT+GGG + chr6_2:64541523-64541542 None:intergenic 30.0%
TTCCAATAAGGATTCAAACT+TGG + chr6_2:64541524-64541543 None:intergenic 30.0%
GGAATGAAATTGTTCCAATA+AGG + chr6_2:64541536-64541555 None:intergenic 30.0%
! GTCTTTTTGCTTTCTTTTCT+TGG - chr6_2:64541861-64541880 Msa0923780:intron 30.0%
!!! TTTCTTTTCTTGGCTTTAGT+TGG - chr6_2:64541871-64541890 Msa0923780:intron 30.0%
! GCATATTCAGTTTTCAAAGT+TGG - chr6_2:64541919-64541938 Msa0923780:intron 30.0%
TTTCAAAGTTGGCGTTTATT+TGG - chr6_2:64541930-64541949 Msa0923780:intron 30.0%
AATGCAGCAACAAACAAAAA+GGG + chr6_2:64542062-64542081 None:intergenic 30.0%
AAATGCAGCAACAAACAAAA+AGG + chr6_2:64542063-64542082 None:intergenic 30.0%
GATACAAAAGCAAACAACAA+AGG + chr6_2:64542104-64542123 None:intergenic 30.0%
TTGCCAATTGAGTATAAGTT+TGG - chr6_2:64542289-64542308 Msa0923780:intron 30.0%
ATCAAATGCTCACTATTTGA+AGG - chr6_2:64542487-64542506 Msa0923780:intron 30.0%
!!! ATACCGTGTTGATTTTTTTG+GGG + chr6_2:64542578-64542597 None:intergenic 30.0%
TCAACACGGTATATTATTGA+AGG - chr6_2:64542586-64542605 Msa0923780:intron 30.0%
CAACACGGTATATTATTGAA+GGG - chr6_2:64542587-64542606 Msa0923780:intron 30.0%
ATGCTTAAACAATGCTCTTA+GGG - chr6_2:64542741-64542760 Msa0923780:intron 30.0%
! TTTTCTTTAACATACTCCCT+CGG + chr6_2:64542934-64542953 None:intergenic 30.0%
TGATTGAAAGTCAAAATCCA+AGG + chr6_2:64542986-64543005 None:intergenic 30.0%
TGACTTTCAATCATTTCTTG+AGG - chr6_2:64542993-64543012 Msa0923780:intron 30.0%
GACTTTCAATCATTTCTTGA+GGG - chr6_2:64542994-64543013 Msa0923780:intron 30.0%
AGCAAAATATGGTTAGAAGT+TGG - chr6_2:64543042-64543061 Msa0923780:intron 30.0%
ACATAGCTAATTAATGGTGT+TGG + chr6_2:64543097-64543116 None:intergenic 30.0%
GCCAATACATAGCTAATTAA+TGG + chr6_2:64543103-64543122 None:intergenic 30.0%
! TTAATTAGCTATGTATTGGC+AGG - chr6_2:64543103-64543122 Msa0923780:intron 30.0%
ACTCAAACTATCGAATAGAA+TGG - chr6_2:64543452-64543471 Msa0923780:intron 30.0%
AAACTATCGAATAGAATGGA+AGG - chr6_2:64543456-64543475 Msa0923780:intron 30.0%
AACTATCGAATAGAATGGAA+GGG - chr6_2:64543457-64543476 Msa0923780:intron 30.0%
!! AACCCGAGTTTAATTTTTAG+TGG - chr6_2:64543548-64543567 Msa0923780:intron 30.0%
!! ATCTAGACATTTTAAGTGGT+GGG + chr6_2:64543842-64543861 None:intergenic 30.0%
! ACAGATCTAGACATTTTAAG+TGG + chr6_2:64543846-64543865 None:intergenic 30.0%
AAGTGTAGTAAATTGAAACC+AGG - chr6_2:64543870-64543889 Msa0923780:intron 30.0%
!! GCAAATCTTTGATTTGAGTA+AGG - chr6_2:64543909-64543928 Msa0923780:intron 30.0%
!! ATCTTTGATTTGAGTAAGGT+TGG - chr6_2:64543913-64543932 Msa0923780:intron 30.0%
!! TCTTTGATTTGAGTAAGGTT+GGG - chr6_2:64543914-64543933 Msa0923780:intron 30.0%
CTCTAAGTGAATATCATGTT+TGG + chr6_2:64544146-64544165 None:intergenic 30.0%
!!! AATCTATTTTTGTGTGAACC+GGG + chr6_2:64544386-64544405 None:intergenic 30.0%
! TGTGTACAATTTTATGGTGT+AGG - chr6_2:64544528-64544547 Msa0923780:intron 30.0%
! TGCTAGTTTATGACATAACT+AGG - chr6_2:64544597-64544616 Msa0923780:intron 30.0%
TTACATGAGCTTAGAGAATA+TGG - chr6_2:64544650-64544669 Msa0923780:intron 30.0%
AGAATATGGAAATGAAGACA+TGG - chr6_2:64544664-64544683 Msa0923780:intron 30.0%
! AATCTGATTTGAGTCAATCA+AGG - chr6_2:64544708-64544727 Msa0923780:intron 30.0%
! ATCTGATTTGAGTCAATCAA+GGG - chr6_2:64544709-64544728 Msa0923780:intron 30.0%
TTGAGAAAGAAGAAGGAAAA+GGG - chr6_2:64544735-64544754 Msa0923780:CDS 30.0%
ACAAAATTAGGTCTTCCTAA+TGG - chr6_2:64544896-64544915 Msa0923780:CDS 30.0%
CAAAATTAGGTCTTCCTAAT+GGG - chr6_2:64544897-64544916 Msa0923780:CDS 30.0%
ATATGAATTTCCTTCCCATT+AGG + chr6_2:64544914-64544933 None:intergenic 30.0%
TATTTGATACATCAAGCTCA+TGG - chr6_2:64545080-64545099 Msa0923780:five_prime_UTR 30.0%
AAGAAAGAAGACTAATAGGG+AGG + chr6_2:64541015-64541034 None:intergenic 35.0%
!! CCCTATTAGTCTTCTTTCTT+TGG - chr6_2:64541015-64541034 Msa0923780:three_prime_UTR 35.0%
!!! CAATTAGAACGGTTTTGAAG+AGG + chr6_2:64541164-64541183 None:intergenic 35.0%
CTCTTCAAAACCGTTCTAAT+TGG - chr6_2:64541162-64541181 Msa0923780:CDS 35.0%
TCCAGAATCTCCAATTAGAA+CGG + chr6_2:64541175-64541194 None:intergenic 35.0%
!! TAATTGGAGATTCTGGAGTT+GGG - chr6_2:64541178-64541197 Msa0923780:CDS 35.0%
AGCTCATCAAAGCACAAATA+TGG - chr6_2:64541304-64541323 Msa0923780:CDS 35.0%
GCTCATCAAAGCACAAATAT+GGG - chr6_2:64541305-64541324 Msa0923780:CDS 35.0%
TGTCTTCAACATCTTAGCAA+AGG - chr6_2:64541453-64541472 Msa0923780:CDS 35.0%
ACCCAAGTTTGAATCCTTAT+TGG - chr6_2:64541519-64541538 Msa0923780:intron 35.0%
ATCGAAACACACATAATCCA+AGG - chr6_2:64541775-64541794 Msa0923780:intron 35.0%
TATCTACATCCCACAAACAT+TGG - chr6_2:64542031-64542050 Msa0923780:intron 35.0%
! ACTAAAGGAAAGCACATACA+AGG - chr6_2:64542138-64542157 Msa0923780:intron 35.0%
TGATAATCCCATTACCATCA+AGG + chr6_2:64542374-64542393 None:intergenic 35.0%
TCACCCCAAAAAAATCAACA+CGG - chr6_2:64542572-64542591 Msa0923780:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG + chr6_2:64542628-64542647 None:intergenic 35.0%
GATGCTTAAACAATGCTCTT+AGG - chr6_2:64542740-64542759 Msa0923780:intron 35.0%
TGTTTAGATATAGAGACCGA+GGG - chr6_2:64542915-64542934 Msa0923780:intron 35.0%
GATGAAAGAAAATTTGGACG+AGG + chr6_2:64543230-64543249 None:intergenic 35.0%
TCTTCTTCTATACAAACCAG+AGG - chr6_2:64543625-64543644 Msa0923780:intron 35.0%
CTTCTTCTATACAAACCAGA+GGG - chr6_2:64543626-64543645 Msa0923780:intron 35.0%
TGACAATTGCAATAGCTCAA+AGG - chr6_2:64543722-64543741 Msa0923780:intron 35.0%
GACAATTGCAATAGCTCAAA+GGG - chr6_2:64543723-64543742 Msa0923780:intron 35.0%
!! GATCTAGACATTTTAAGTGG+TGG + chr6_2:64543843-64543862 None:intergenic 35.0%
GCATTGAATTGAAAACAACC+TGG + chr6_2:64543891-64543910 None:intergenic 35.0%
TAACCAAGTCGACTATCAAT+AGG - chr6_2:64544032-64544051 Msa0923780:intron 35.0%
! AAAAGCATGTGACACAAACA+TGG - chr6_2:64544061-64544080 Msa0923780:intron 35.0%
! ATGTGACACAAACATGGTTT+TGG - chr6_2:64544067-64544086 Msa0923780:intron 35.0%
AATTACATGCAGAAGATACC+CGG - chr6_2:64544365-64544384 Msa0923780:intron 35.0%
ATCACAAGCTCATACTATAG+AGG - chr6_2:64544560-64544579 Msa0923780:intron 35.0%
!! TCATACTATAGAGGAGCATT+GGG - chr6_2:64544569-64544588 Msa0923780:intron 35.0%
GTTGAGAAAGAAGAAGGAAA+AGG - chr6_2:64544734-64544753 Msa0923780:CDS 35.0%
ACCGTTCTAATTGGAGATTC+TGG - chr6_2:64541171-64541190 Msa0923780:CDS 40.0%
!! CTAATTGGAGATTCTGGAGT+TGG - chr6_2:64541177-64541196 Msa0923780:CDS 40.0%
GTAACCAAATTCCACACCTA+TGG + chr6_2:64541262-64541281 None:intergenic 40.0%
AAAAAGTTACCTCTCTTGGC+CGG + chr6_2:64541337-64541356 None:intergenic 40.0%
TATGAAACACGGATACTCCT+TGG + chr6_2:64541795-64541814 None:intergenic 40.0%
AGCAACAAACAAAAAGGGTG+GGG + chr6_2:64542057-64542076 None:intergenic 40.0%
CAGCAACAAACAAAAAGGGT+GGG + chr6_2:64542058-64542077 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG + chr6_2:64542629-64542648 None:intergenic 40.0%
GGACAGAGAGAGTAATTTAG+AGG + chr6_2:64542860-64542879 None:intergenic 40.0%
GTGTTTAGATATAGAGACCG+AGG - chr6_2:64542914-64542933 Msa0923780:intron 40.0%
TCAATCATTTCTTGAGGGAG+AGG - chr6_2:64542999-64543018 Msa0923780:intron 40.0%
AGAGGAATAATTGTGCGGAT+TGG - chr6_2:64543017-64543036 Msa0923780:intron 40.0%
!! GCGGATTGGTTAGCAAAATA+TGG - chr6_2:64543031-64543050 Msa0923780:intron 40.0%
TGGATTGTTGCGATGTATCA+TGG - chr6_2:64543062-64543081 Msa0923780:intron 40.0%
GGTGAACAATTTGTCCTTCT+AGG + chr6_2:64543526-64543545 None:intergenic 40.0%
!!! CTAGGTTTTTTTTAGCCCTC+TGG + chr6_2:64543644-64543663 None:intergenic 40.0%
! TTGATTTGAGTAAGGTTGGG+TGG - chr6_2:64543917-64543936 Msa0923780:intron 40.0%
TGATTTGAGTAAGGTTGGGT+GGG - chr6_2:64543918-64543937 Msa0923780:intron 40.0%
! TGAGTTATTGATTGTGGGGT+TGG + chr6_2:64544096-64544115 None:intergenic 40.0%
! CTCATACTATAGAGGAGCAT+TGG - chr6_2:64544568-64544587 Msa0923780:intron 40.0%
!! CATACTATAGAGGAGCATTG+GGG - chr6_2:64544570-64544589 Msa0923780:intron 40.0%
!! ATACTATAGAGGAGCATTGG+GGG - chr6_2:64544571-64544590 Msa0923780:intron 40.0%
TGATTTGAGTCAATCAAGGG+AGG - chr6_2:64544712-64544731 Msa0923780:intron 40.0%
AAAGGGTTTGCAGAAAGAGA+AGG - chr6_2:64544752-64544771 Msa0923780:CDS 40.0%
ATTAGGTCTTCCTAATGGGA+AGG - chr6_2:64544901-64544920 Msa0923780:CDS 40.0%
CTTGATTCCAAGCCAACCAT+AGG - chr6_2:64541243-64541262 Msa0923780:CDS 45.0%
CCAAATTCCACACCTATGGT+TGG + chr6_2:64541258-64541277 None:intergenic 45.0%
CCAACCATAGGTGTGGAATT+TGG - chr6_2:64541255-64541274 Msa0923780:CDS 45.0%
CACGAACACTAGACACGAAA+CGG - chr6_2:64541649-64541668 Msa0923780:intron 45.0%
TATACGTGTCAGTGTCGTGT+AGG - chr6_2:64541728-64541747 Msa0923780:intron 45.0%
GCAGCAACAAACAAAAAGGG+TGG + chr6_2:64542059-64542078 None:intergenic 45.0%
! AATTTCAGGTGGGACCTTGA+TGG - chr6_2:64542357-64542376 Msa0923780:intron 45.0%
TCTTGCTAACAAGTGCCCTA+AGG - chr6_2:64542610-64542629 Msa0923780:intron 45.0%
CTTGCTAACAAGTGCCCTAA+GGG - chr6_2:64542611-64542630 Msa0923780:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG - chr6_2:64542623-64542642 Msa0923780:intron 45.0%
GAGGGAGAGGAATAATTGTG+CGG - chr6_2:64543012-64543031 Msa0923780:intron 45.0%
! CTATGTATTGGCAGGTGTCT+TGG - chr6_2:64543111-64543130 Msa0923780:intron 45.0%
AAGCGGTTAACGATCCTAGA+AGG - chr6_2:64543509-64543528 Msa0923780:intron 45.0%
! GTAATCTAGAGTTCGCTCGA+AGG + chr6_2:64543599-64543618 None:intergenic 45.0%
GATTTGAGTAAGGTTGGGTG+GGG - chr6_2:64543919-64543938 Msa0923780:intron 45.0%
! GTGGGTCTAGGACAAGAATT+GGG - chr6_2:64543941-64543960 Msa0923780:intron 45.0%
! CGACCTATTGATAGTCGACT+TGG + chr6_2:64544038-64544057 None:intergenic 45.0%
AGTCGACTATCAATAGGTCG+AGG - chr6_2:64544038-64544057 Msa0923780:intron 45.0%
TGAAACTAGTCACTCGAGTC+AGG + chr6_2:64544343-64544362 None:intergenic 45.0%
AGGGAGGTTGAGAAAGAAGA+AGG - chr6_2:64544728-64544747 Msa0923780:CDS 45.0%
!! CATATATTATATATTATATA+TGG - chr6_2:64541110-64541129 Msa0923780:CDS 5.0%
!!! ATTTTTAAATTTTACAATAT+TGG - chr6_2:64544447-64544466 Msa0923780:intron 5.0%
TTCCAAGCCAACCATAGGTG+TGG - chr6_2:64541248-64541267 Msa0923780:CDS 50.0%
! TTCCACACCTATGGTTGGCT+TGG + chr6_2:64541253-64541272 None:intergenic 50.0%
GCACAAATATGGGACACTGC+CGG - chr6_2:64541315-64541334 Msa0923780:CDS 50.0%
! AGGTGGGACCTTGATGGTAA+TGG - chr6_2:64542363-64542382 Msa0923780:intron 50.0%
! GGTGGGACCTTGATGGTAAT+GGG - chr6_2:64542364-64542383 Msa0923780:intron 50.0%
! GGTGGGTCTAGGACAAGAAT+TGG - chr6_2:64543940-64543959 Msa0923780:intron 50.0%
AGGGTGGGGCCAATGTTTGT+GGG + chr6_2:64542043-64542062 None:intergenic 55.0%
AAGGGTGGGGCCAATGTTTG+TGG + chr6_2:64542044-64542063 None:intergenic 55.0%
TTGAGTAAGGTTGGGTGGGG+TGG - chr6_2:64543922-64543941 Msa0923780:intron 55.0%
TGAGTAAGGTTGGGTGGGGT+GGG - chr6_2:64543923-64543942 Msa0923780:intron 55.0%
AGGTTGGGTGGGGTGGGTCT+AGG - chr6_2:64543929-64543948 Msa0923780:intron 65.0%
GGGACACTGCCGGCCAAGAG+AGG - chr6_2:64541325-64541344 Msa0923780:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 64540965 64545109 64540965 ID=Msa0923780;Name=Msa0923780
chr6_2 mRNA 64540965 64545109 64540965 ID=Msa0923780-mRNA-1;Parent=Msa0923780;Name=Msa0923780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=164|1|1|1|1|1|2|127|216
chr6_2 exon 64540965 64541524 64540965 ID=Msa0923780-mRNA-1:exon:10158;Parent=Msa0923780-mRNA-1
chr6_2 exon 64544728 64545109 64544728 ID=Msa0923780-mRNA-1:exon:10157;Parent=Msa0923780-mRNA-1
chr6_2 five_prime_UTR 64544946 64545109 64544946 ID=Msa0923780-mRNA-1:five_prime_utr;Parent=Msa0923780-mRNA-1
chr6_2 CDS 64544728 64544945 64544728 ID=Msa0923780-mRNA-1:cds;Parent=Msa0923780-mRNA-1
chr6_2 CDS 64541092 64541524 64541092 ID=Msa0923780-mRNA-1:cds;Parent=Msa0923780-mRNA-1
chr6_2 three_prime_UTR 64540965 64541091 64540965 ID=Msa0923780-mRNA-1:three_prime_utr;Parent=Msa0923780-mRNA-1
Gene Sequence

>Msa0923780

ATGGCTGATACATTTGATGAGCAGTGTGATTACCTCTTCAAAACCGTTCTAATTGGAGATTCTGGAGTTGGGAAATCAAACCTTATTTCAAGGTTTACAAAAGATGAATTTCGACTTGATTCCAAGCCAACCATAGGTGTGGAATTTGGTTACAAGAACATCAAGGTTAGAGACAAGCTCATCAAAGCACAAATATGGGACACTGCCGGCCAAGAGAGGTTTAGAGCTATCACAAGCTCATACTATAGAGGAGCATTGGGGGCAATGCTAGTTTATGACATAACTAGGATAATAACTTTTGTTAATATAAAAAAATGGTTACATGAGCTTAGAGAATATGGAAATGAAGACATGGTGATTATACTAGTAGCAAATAAATCTGATTTGAGTCAATCAAGGGAGGTTGAGAAAGAAGAAGGAAAAGGGTTTGCAGAAAGAGAAGGTTTATGTTTTATGGAAACTTCTGCTTTGCAAAATTTAAATGTTGAGGATGCATTCTTAGAAATGATTACTAAGATCCATGATATCATAAGCCATAAAAGTTTGGAAGATAAAATGAATGGGACAAAATTAGGTCTTCCTAATGGGAAGGAAATTCATATAGCTGATGAAGTGACTGCTACTAAACAAGTCAATTGTTGTTATGGATGA

Protein sequence

>Msa0923780

MADTFDEQCDYLFKTVLIGDSGVGKSNLISRFTKDEFRLDSKPTIGVEFGYKNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRIITFVNIKKWLHELREYGNEDMVIILVANKSDLSQSREVEKEEGKGFAEREGLCFMETSALQNLNVEDAFLEMITKIHDIISHKSLEDKMNGTKLGLPNGKEIHIADEVTATKQVNCCYG*