Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118970 | XP_013467775.1 | 96.379 | 580 | 21 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118970 | sp|Q8S4R4|CRTSO_SOLLC | 81.317 | 562 | 102 | 1 | 38 | 596 | 54 | 615 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118970 | A0A072VJ38 | 96.379 | 580 | 21 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007570 | Msa0118970 | 0.831952 | 1.246837e-55 | -8.615850e-47 |
| Msa0021240 | Msa0118970 | 0.810487 | 1.124913e-50 | -8.615850e-47 |
| Msa0022960 | Msa0118970 | 0.806853 | 6.722245e-50 | -8.615850e-47 |
| Msa0037040 | Msa0118970 | 0.827347 | 1.644732e-54 | -8.615850e-47 |
| Msa0038750 | Msa0118970 | 0.828145 | 1.058083e-54 | -8.615850e-47 |
| Msa0042500 | Msa0118970 | 0.827010 | 1.981109e-54 | -8.615850e-47 |
| Msa0076990 | Msa0118970 | 0.808976 | 2.377148e-50 | -8.615850e-47 |
| Msa0079570 | Msa0118970 | 0.821707 | 3.498225e-53 | -8.615850e-47 |
| Msa0088670 | Msa0118970 | 0.818609 | 1.792520e-52 | -8.615850e-47 |
| Msa0113910 | Msa0118970 | 0.804057 | 2.592492e-49 | -8.615850e-47 |
| Msa0118700 | Msa0118970 | 0.821497 | 3.912508e-53 | -8.615850e-47 |
| Msa0118970 | Msa0127240 | 0.834109 | 3.623626e-56 | -8.615850e-47 |
| Msa0118970 | Msa0128840 | 0.837040 | 6.570906e-57 | -8.615850e-47 |
| Msa0118970 | Msa0131230 | 0.837917 | 3.917200e-57 | -8.615850e-47 |
| Msa0118970 | Msa0138340 | 0.818297 | 2.109841e-52 | -8.615850e-47 |
| Msa0118970 | Msa0139920 | 0.804983 | 1.662159e-49 | -8.615850e-47 |
| Msa0118970 | Msa0147960 | 0.819297 | 1.250661e-52 | -8.615850e-47 |
| Msa0118970 | Msa0160080 | 0.808988 | 2.362437e-50 | -8.615850e-47 |
| Msa0118970 | Msa0172290 | 0.833788 | 4.361259e-56 | -8.615850e-47 |
| Msa0118970 | Msa0186380 | 0.818054 | 2.394654e-52 | -8.615850e-47 |
| Msa0118970 | Msa0195670 | 0.802751 | 4.835020e-49 | -8.615850e-47 |
| Msa0118970 | Msa0208710 | 0.809444 | 1.886411e-50 | -8.615850e-47 |
| Msa0118970 | Msa0269430 | 0.822525 | 2.261198e-53 | -8.615850e-47 |
| Msa0118970 | Msa0270230 | 0.804576 | 2.021318e-49 | -8.615850e-47 |
| Msa0118970 | Msa0350300 | 0.803450 | 3.465400e-49 | -8.615850e-47 |
| Msa0118970 | Msa0378530 | 0.805398 | 1.361213e-49 | -8.615850e-47 |
| Msa0118970 | Msa0384570 | 0.820602 | 6.290535e-53 | -8.615850e-47 |
| Msa0118970 | Msa0385850 | 0.800172 | 1.632541e-48 | -8.615850e-47 |
| Msa0118970 | Msa0385870 | 0.802035 | 6.791388e-49 | -8.615850e-47 |
| Msa0118970 | Msa0389890 | 0.819451 | 1.153770e-52 | -8.615850e-47 |
| Msa0118970 | Msa0433890 | 0.806580 | 7.676964e-50 | -8.615850e-47 |
| Msa0118970 | Msa0522510 | 0.820709 | 5.944196e-53 | -8.615850e-47 |
| Msa0118970 | Msa0523400 | 0.816869 | 4.427889e-52 | -8.615850e-47 |
| Msa0118970 | Msa0527210 | 0.816759 | 4.685761e-52 | -8.615850e-47 |
| Msa0118970 | Msa0528830 | 0.806236 | 9.071574e-50 | -8.615850e-47 |
| Msa0118970 | Msa0550820 | 0.808625 | 2.825656e-50 | -8.615850e-47 |
| Msa0118970 | Msa0569540 | 0.807196 | 5.688198e-50 | -8.615850e-47 |
| Msa0118970 | Msa0585720 | 0.800908 | 1.155959e-48 | -8.615850e-47 |
| Msa0118970 | Msa0625900 | 0.807293 | 5.425350e-50 | -8.615850e-47 |
| Msa0118970 | Msa0662670 | 0.810468 | 1.135530e-50 | -8.615850e-47 |
| Msa0118970 | Msa0663580 | 0.802104 | 6.572270e-49 | -8.615850e-47 |
| Msa0118970 | Msa0663690 | 0.803119 | 4.058246e-49 | -8.615850e-47 |
| Msa0118970 | Msa0689980 | 0.814128 | 1.803608e-51 | -8.615850e-47 |
| Msa0118970 | Msa0706130 | 0.800676 | 1.288979e-48 | -8.615850e-47 |
| Msa0118970 | Msa0708870 | 0.812503 | 4.102296e-51 | -8.615850e-47 |
| Msa0118970 | Msa0712100 | 0.801471 | 8.866768e-49 | -8.615850e-47 |
| Msa0118970 | Msa0712580 | 0.838070 | 3.576510e-57 | -8.615850e-47 |
| Msa0118970 | Msa0720130 | 0.819986 | 8.706839e-53 | -8.615850e-47 |
| Msa0118970 | Msa0733460 | 0.814257 | 1.689079e-51 | -8.615850e-47 |
| Msa0118970 | Msa0755480 | 0.805353 | 1.390478e-49 | -8.615850e-47 |
| Msa0118970 | Msa0762480 | 0.840626 | 7.764876e-58 | -8.615850e-47 |
| Msa0118970 | Msa0790380 | 0.808527 | 2.964130e-50 | -8.615850e-47 |
| Msa0118970 | Msa0805030 | 0.806880 | 6.635468e-50 | -8.615850e-47 |
| Msa0118970 | Msa0812020 | 0.815440 | 9.233007e-52 | -8.615850e-47 |
| Msa0118970 | Msa0842370 | 0.832486 | 9.197879e-56 | -8.615850e-47 |
| Msa0118970 | Msa0911710 | 0.805329 | 1.406900e-49 | -8.615850e-47 |
| Msa0118970 | Msa0975260 | 0.800829 | 1.199191e-48 | -8.615850e-47 |
| Msa0118970 | Msa1028720 | 0.818011 | 2.448624e-52 | -8.615850e-47 |
| Msa0118970 | Msa1028960 | 0.803026 | 4.242409e-49 | -8.615850e-47 |
| Msa0118970 | Msa1032560 | 0.807867 | 4.097391e-50 | -8.615850e-47 |
| Msa0118970 | Msa1033460 | 0.813643 | 2.306940e-51 | -8.615850e-47 |
| Msa0118970 | Msa1039860 | 0.811167 | 8.015742e-51 | -8.615850e-47 |
| Msa0118970 | Msa1072430 | 0.802409 | 5.688246e-49 | -8.615850e-47 |
| Msa0118970 | Msa1083620 | 0.803186 | 3.931222e-49 | -8.615850e-47 |
| Msa0118970 | Msa1084210 | 0.822938 | 1.812138e-53 | -8.615850e-47 |
| Msa0118970 | Msa1113780 | 0.824123 | 9.571060e-54 | -8.615850e-47 |
| Msa0118970 | Msa1126980 | 0.803216 | 3.875002e-49 | -8.615850e-47 |
| Msa0118970 | Msa1128230 | 0.809146 | 2.185977e-50 | -8.615850e-47 |
| Msa0118970 | Msa1156060 | 0.804142 | 2.489791e-49 | -8.615850e-47 |
| Msa0118970 | Msa1159420 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
| Msa0118970 | Msa1160470 | 0.824881 | 6.346127e-54 | -8.615850e-47 |
| Msa0118970 | Msa1198830 | 0.809420 | 1.908851e-50 | -8.615850e-47 |
| Msa0118970 | Msa1207660 | 0.813194 | 2.896383e-51 | -8.615850e-47 |
| Msa0118970 | Msa1207770 | 0.814180 | 1.756976e-51 | -8.615850e-47 |
| Msa0118970 | Msa1225240 | 0.801071 | 1.070247e-48 | -8.615850e-47 |
| Msa0118970 | Msa1250490 | 0.814772 | 1.299673e-51 | -8.615850e-47 |
| Msa0118970 | Msa1257860 | 0.800040 | 1.736812e-48 | -8.615850e-47 |
| Msa0118970 | Msa1269370 | 0.809798 | 1.583422e-50 | -8.615850e-47 |
| Msa0118970 | Msa1277890 | 0.814394 | 1.575657e-51 | -8.615850e-47 |
| Msa0118970 | Msa1288380 | 0.816099 | 6.584912e-52 | -8.615850e-47 |
| Msa0118970 | Msa1295220 | 0.802979 | 4.338807e-49 | -8.615850e-47 |
| Msa0118970 | Msa1331530 | 0.805193 | 1.501987e-49 | -8.615850e-47 |
| Msa0118970 | Msa1349490 | 0.816930 | 4.288877e-52 | -8.615850e-47 |
| Msa0118970 | Msa1360070 | 0.823773 | 1.156322e-53 | -8.615850e-47 |
| Msa0118970 | Msa1371540 | 0.806851 | 6.729695e-50 | -8.615850e-47 |
| Msa0118970 | Msa1429180 | 0.802401 | 5.708673e-49 | -8.615850e-47 |
| Msa0118970 | Msa1443280 | 0.805418 | 1.348037e-49 | -8.615850e-47 |
| Msa0118970 | Msa1462210 | 0.815044 | 1.131107e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118970 | MtrunA17_Chr1g0176461 | 96.379 | 580 | 21 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1157 |
| Msa0118970 | MtrunA17_Chr0c12g0493641 | 31.952 | 579 | 324 | 23 | 42 | 584 | 38 | 582 | 1.54e-63 | 219 |
| Msa0118970 | MtrunA17_Chr4g0077041 | 36.667 | 210 | 122 | 7 | 354 | 557 | 26 | 230 | 4.47e-34 | 129 |
| Msa0118970 | MtrunA17_Chr1g0162681 | 23.006 | 539 | 339 | 18 | 79 | 555 | 23 | 547 | 5.87e-13 | 71.6 |
| Msa0118970 | MtrunA17_Chr8g0373291 | 23.971 | 559 | 344 | 18 | 79 | 572 | 22 | 564 | 5.98e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118970 | AT1G06820.1 | 87.649 | 502 | 62 | 0 | 79 | 580 | 78 | 579 | 0.0 | 922 |
| Msa0118970 | AT1G06820.3 | 86.391 | 507 | 67 | 1 | 79 | 585 | 78 | 582 | 0.0 | 912 |
| Msa0118970 | AT1G06820.4 | 87.104 | 442 | 57 | 0 | 139 | 580 | 19 | 460 | 0.0 | 814 |
| Msa0118970 | AT1G06820.2 | 86.967 | 422 | 55 | 0 | 79 | 500 | 78 | 499 | 0.0 | 765 |
| Msa0118970 | AT1G57770.1 | 31.343 | 536 | 324 | 18 | 80 | 586 | 54 | 574 | 6.48e-60 | 209 |
| Msa0118970 | AT5G49555.1 | 22.540 | 559 | 349 | 18 | 79 | 572 | 14 | 553 | 2.89e-15 | 79.3 |
Find 167 sgRNAs with CRISPR-Local
Find 482 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTGGTGGGTTGGTTGC+TGG | 0.141035 | 1_3:+42259219 | Msa0118970:CDS |
| GTTATACCTGGTGGAAGTTC+TGG | 0.145592 | 1_3:+42259291 | Msa0118970:CDS |
| AGCTGCATAGAATCCGATTT+TGG | 0.213653 | 1_3:+42264961 | Msa0118970:three_prime_UTR |
| TGAAAGTTCTCTTCCTCTTT+TGG | 0.238566 | 1_3:-42263034 | None:intergenic |
| AGCATTTGATATTACGGTTT+TGG | 0.254832 | 1_3:-42262846 | None:intergenic |
| GGGTTTGATGCAATTGTTAT+TGG | 0.272864 | 1_3:+42259192 | Msa0118970:CDS |
| ATTGTAGGAAAGTTAGTAAA+AGG | 0.297392 | 1_3:+42263001 | Msa0118970:intron |
| TGGGTCTGGGATTGGTGGGT+TGG | 0.303657 | 1_3:+42259212 | Msa0118970:CDS |
| GTGGGATTAACTACCCTCTT+GGG | 0.310382 | 1_3:+42262591 | Msa0118970:CDS |
| TATATTCACAACTTCTTCAA+TGG | 0.321714 | 1_3:+42263349 | Msa0118970:CDS |
| CAAATGGTGGTAGAAGAAAA+AGG | 0.322612 | 1_3:+42259091 | Msa0118970:CDS |
| GGATTGGTGGGTTGGTTGCT+GGG | 0.332135 | 1_3:+42259220 | Msa0118970:CDS |
| TACAAGTATAACTCTTTGTT+TGG | 0.332488 | 1_3:-42265043 | None:intergenic |
| GATGCAATTGTTATTGGGTC+TGG | 0.348955 | 1_3:+42259198 | Msa0118970:CDS |
| GCCCGTGACGAGGGTACTTA+TGG | 0.350068 | 1_3:+42263931 | Msa0118970:CDS |
| TCTGGTAGCATTTGATATTA+CGG | 0.350827 | 1_3:-42262852 | None:intergenic |
| GGTTTGATGCAATTGTTATT+GGG | 0.352695 | 1_3:+42259193 | Msa0118970:CDS |
| GGCATGCTGCTTGGGTTGCT+TGG | 0.354118 | 1_3:+42264649 | Msa0118970:CDS |
| CAACTACCTCAAGCACAAAA+TGG | 0.357692 | 1_3:-42263141 | None:intergenic |
| TTGTTTGGATAAAAGAAAAC+TGG | 0.361173 | 1_3:-42265028 | None:intergenic |
| CCAGTTGAATGCTTGACATT+AGG | 0.362918 | 1_3:+42260967 | Msa0118970:CDS |
| CTAGAACAATTGGACCAGTT+TGG | 0.364549 | 1_3:+42263244 | Msa0118970:intron |
| TGCTGCTTGGGTTGCTTGGT+TGG | 0.365552 | 1_3:+42264653 | Msa0118970:CDS |
| GTTGGCTCTTCTGTTATGTT+TGG | 0.367913 | 1_3:+42259345 | Msa0118970:CDS |
| CATCGAGTAGCTGCAGATAT+TGG | 0.371399 | 1_3:+42264205 | Msa0118970:CDS |
| GGCAAAAGGTCTAGTTGATC+AGG | 0.375101 | 1_3:+42262640 | Msa0118970:CDS |
| GGGTGTGATGGTAGATGATG+GGG | 0.379033 | 1_3:-42258999 | None:intergenic |
| TTATACCTGGTGGAAGTTCT+GGG | 0.379439 | 1_3:+42259292 | Msa0118970:CDS |
| GAAGGTAAAGATTGAAACTT+TGG | 0.388568 | 1_3:-42259027 | None:intergenic |
| AGCATTCCAAAGGGGTTGTT+AGG | 0.391726 | 1_3:+42263967 | Msa0118970:CDS |
| ATTGTTATTGGGTCTGGGAT+TGG | 0.392967 | 1_3:+42259204 | Msa0118970:CDS |
| TTAGAGAAGAAATTGTTTCC+AGG | 0.395116 | 1_3:+42263617 | Msa0118970:CDS |
| TCTTTACCTTCATGTAGCTT+TGG | 0.398304 | 1_3:+42259039 | Msa0118970:CDS |
| AGCATTCACCATAAAATTTG+AGG | 0.398663 | 1_3:-42260760 | None:intergenic |
| TGAAGGATATGACGACCTTC+AGG | 0.399654 | 1_3:-42263326 | None:intergenic |
| GCTGTTCCATCGCAATTTGA+TGG | 0.400308 | 1_3:+42264900 | Msa0118970:three_prime_UTR |
| TGTGAAAGGTGCAAAAGTTT+TGG | 0.400396 | 1_3:+42259254 | Msa0118970:CDS |
| TTATTGGGTCTGGGATTGGT+GGG | 0.401354 | 1_3:+42259208 | Msa0118970:CDS |
| GTTGGAGACAGTTGCTTCCC+TGG | 0.408956 | 1_3:+42264139 | Msa0118970:CDS |
| GTTATTGCGGTAGCTTTCTC+AGG | 0.411866 | 1_3:+42264169 | Msa0118970:CDS |
| ATGCAATTGTTATTGGGTCT+GGG | 0.415335 | 1_3:+42259199 | Msa0118970:CDS |
| GGCATTCCTAACAACCCCTT+TGG | 0.415481 | 1_3:-42263973 | None:intergenic |
| AAACTTACAGTTGTGTTAAA+CGG | 0.418925 | 1_3:-42263994 | None:intergenic |
| TCCATATGGTTCCTCCAAAC+TGG | 0.419387 | 1_3:-42263258 | None:intergenic |
| TATTATTTGCCTCAAAATGC+TGG | 0.423282 | 1_3:+42261722 | Msa0118970:CDS |
| TTTGGAATGCTGCGTGGCAT+TGG | 0.424414 | 1_3:-42263955 | None:intergenic |
| TATGTTTGGTTTCAGTGATA+AGG | 0.426067 | 1_3:+42259359 | Msa0118970:CDS |
| CATAGCCAGGAAGTATATTC+AGG | 0.427849 | 1_3:+42261748 | Msa0118970:CDS |
| GCTACCAGATGGGACACATT+TGG | 0.431536 | 1_3:+42262866 | Msa0118970:CDS |
| AGCAGCATGCCGTCCAAAAC+AGG | 0.432079 | 1_3:-42264637 | None:intergenic |
| TGGATCCTGAATATACTTCC+TGG | 0.432364 | 1_3:-42261753 | None:intergenic |
| GTTATTGGGTCTGGGATTGG+TGG | 0.434710 | 1_3:+42259207 | Msa0118970:CDS |
| TAATGCCATGAAAATGATAA+TGG | 0.437425 | 1_3:-42258863 | None:intergenic |
| AAATGAACGGTTGTCGGATC+AGG | 0.442725 | 1_3:-42260641 | None:intergenic |
| ACTTGCTTTCAGAGCATAGA+TGG | 0.443465 | 1_3:+42264106 | Msa0118970:intron |
| TGGTACTTATCTAGAACAAT+TGG | 0.444078 | 1_3:+42263234 | Msa0118970:intron |
| CTAACCAAATGTGTCCCATC+TGG | 0.445008 | 1_3:-42262870 | None:intergenic |
| GGGGTGTGATGGTAGATGAT+GGG | 0.445186 | 1_3:-42259000 | None:intergenic |
| GGTGGGATTAACTACCCTCT+TGG | 0.447475 | 1_3:+42262590 | Msa0118970:CDS |
| AAATGGTGACAATCTGTATC+TGG | 0.449846 | 1_3:-42263124 | None:intergenic |
| GAAAGTGATGATGTACTGTT+TGG | 0.456103 | 1_3:-42258757 | None:intergenic |
| TTCTTCAATGGACGATTGGC+AGG | 0.456294 | 1_3:+42263361 | Msa0118970:CDS |
| ACCAGTTTGGAGGAACCATA+TGG | 0.456800 | 1_3:+42263257 | Msa0118970:CDS |
| GCTTAGCTGCGTGCCAATGC+GGG | 0.457813 | 1_3:+42264931 | Msa0118970:three_prime_UTR |
| TCATCTGGGTCACGCTCAAA+TGG | 0.458244 | 1_3:+42259075 | Msa0118970:CDS |
| AGTGAAAGGGATGGTGAAGT+TGG | 0.461843 | 1_3:+42259125 | Msa0118970:CDS |
| TTATGGAAAGTGGGAAGAGA+GGG | 0.469075 | 1_3:+42259157 | Msa0118970:CDS |
| AAAATGCTGGAGCCATAGCC+AGG | 0.471308 | 1_3:+42261735 | Msa0118970:CDS |
| TGATTAGAAACAGAGAGTAT+AGG | 0.472135 | 1_3:-42258973 | None:intergenic |
| TGGAGTCTGCAAAGCGTTGA+CGG | 0.473220 | 1_3:-42262013 | None:intergenic |
| TGGGGTGTGATGGTAGATGA+TGG | 0.478215 | 1_3:-42259001 | None:intergenic |
| ACCATGCTAGCATTAATCAT+TGG | 0.478809 | 1_3:-42262033 | None:intergenic |
| TGGGATTAACTACCCTCTTG+GGG | 0.481634 | 1_3:+42262592 | Msa0118970:CDS |
| CCTAATGTCAAGCATTCAAC+TGG | 0.484755 | 1_3:-42260967 | None:intergenic |
| ATTTACACAGTTATAGAACT+AGG | 0.485783 | 1_3:+42264808 | Msa0118970:three_prime_UTR |
| CAACTTGATAACACAAGCAT+TGG | 0.487277 | 1_3:+42260589 | Msa0118970:CDS |
| ACTTTGGAGGTGGGGTGTGA+TGG | 0.488320 | 1_3:-42259011 | None:intergenic |
| TTTCAATGCTCTGAATTCGT+TGG | 0.490246 | 1_3:+42260891 | Msa0118970:CDS |
| AAAGATTGAAACTTTGGAGG+TGG | 0.490762 | 1_3:-42259021 | None:intergenic |
| AAGATTGAAACTTTGGAGGT+GGG | 0.491835 | 1_3:-42259020 | None:intergenic |
| CACGAGTATTATCACCGAGC+AGG | 0.494330 | 1_3:+42262691 | Msa0118970:CDS |
| CAACTTCTTCAATGGACGAT+TGG | 0.495431 | 1_3:+42263357 | Msa0118970:CDS |
| AGGAGAATCACTGCCAAAAG+AGG | 0.498346 | 1_3:+42263021 | Msa0118970:CDS |
| TTATTTGTCGTCGTTCCACT+AGG | 0.499517 | 1_3:+42258810 | Msa0118970:five_prime_UTR |
| ATGTGTATTGAAAGAAAAGA+TGG | 0.502132 | 1_3:-42263076 | None:intergenic |
| GGGACTCAGTTGGCTGTGAA+AGG | 0.502136 | 1_3:+42259240 | Msa0118970:CDS |
| TCGATGGATGCTCGAAGACC+TGG | 0.502515 | 1_3:-42263635 | None:intergenic |
| AGTTACAGAAAGGAATATCT+TGG | 0.502589 | 1_3:-42265066 | None:intergenic |
| ATTGCAAAGTCCTTGGCAAA+AGG | 0.507882 | 1_3:+42262626 | Msa0118970:CDS |
| CTGAATATACTTCCTGGCTA+TGG | 0.509894 | 1_3:-42261747 | None:intergenic |
| TCGCAATTTGATGGACAAGA+TGG | 0.513624 | 1_3:+42264909 | Msa0118970:three_prime_UTR |
| GTTATGGAAAGTGGGAAGAG+AGG | 0.516588 | 1_3:+42259156 | Msa0118970:CDS |
| AGATTGAAACTTTGGAGGTG+GGG | 0.517468 | 1_3:-42259019 | None:intergenic |
| AGATGAAAATGAACGGTTGT+CGG | 0.517921 | 1_3:-42260647 | None:intergenic |
| GTTGGTTGCTGGGACTCAGT+TGG | 0.518251 | 1_3:+42259230 | Msa0118970:CDS |
| CTTTACCTCTATAAAATCGA+TGG | 0.518459 | 1_3:-42263651 | None:intergenic |
| ACTCGAACAGAGAGGTGGTT+TGG | 0.522462 | 1_3:-42260671 | None:intergenic |
| ACCGCAATAACACCTTGTCC+AGG | 0.522476 | 1_3:-42264157 | None:intergenic |
| TGAATATGAGGCAAAGAAGC+AGG | 0.524416 | 1_3:+42263568 | Msa0118970:CDS |
| GAACAATTGGACCAGTTTGG+AGG | 0.525975 | 1_3:+42263247 | Msa0118970:intron |
| TTGTTGGGGAGGGAGGAGAG+AGG | 0.528973 | 1_3:+42264776 | Msa0118970:three_prime_UTR |
| GAAAGGGATGGTGAAGTTGG+AGG | 0.529091 | 1_3:+42259128 | Msa0118970:CDS |
| ATGCCACGCAGCATTCCAAA+GGG | 0.532817 | 1_3:+42263958 | Msa0118970:CDS |
| ATAGATGGTCTTTACTGTGT+TGG | 0.534434 | 1_3:+42264121 | Msa0118970:CDS |
| ACTTACGGCTTTGCCCTGCT+CGG | 0.535017 | 1_3:-42262705 | None:intergenic |
| GACAGTTGCTTCCCTGGACA+AGG | 0.535454 | 1_3:+42264145 | Msa0118970:CDS |
| AGGGTATTGATGAAAGTGAA+AGG | 0.535518 | 1_3:+42259111 | Msa0118970:CDS |
| CTCATAAAATTGATTCCTAG+TGG | 0.536568 | 1_3:-42258825 | None:intergenic |
| TGTGTGACAGACACTTTGGT+GGG | 0.539652 | 1_3:+42262573 | Msa0118970:CDS |
| AAGAAGTTGTGAATATATGA+AGG | 0.541078 | 1_3:-42263343 | None:intergenic |
| GTCCATAAGTACCCTCGTCA+CGG | 0.543450 | 1_3:-42263933 | None:intergenic |
| GCTTGGTTGGTTAAGAACAT+TGG | 0.543596 | 1_3:+42264666 | Msa0118970:CDS |
| GGTAAAGATTGAAACTTTGG+AGG | 0.544715 | 1_3:-42259024 | None:intergenic |
| TTGGAGAAGTATGTTATACC+TGG | 0.544910 | 1_3:+42259279 | Msa0118970:CDS |
| AAAATGTAAAATAGAGAGGG+TGG | 0.545296 | 1_3:+42258641 | Msa0118970:five_prime_UTR |
| TCTCTCAAGAACTGAATATG+AGG | 0.547144 | 1_3:+42263556 | Msa0118970:CDS |
| GGCTTAGCTGCGTGCCAATG+CGG | 0.553372 | 1_3:+42264930 | Msa0118970:three_prime_UTR |
| TCCAATGATTAATGCTAGCA+TGG | 0.556512 | 1_3:+42262032 | Msa0118970:CDS |
| TAATATCAAATGCTACCAGA+TGG | 0.557408 | 1_3:+42262855 | Msa0118970:CDS |
| GGGTATTGATGAAAGTGAAA+GGG | 0.560886 | 1_3:+42259112 | Msa0118970:CDS |
| ACACAAGCATTGGAAGCAGT+TGG | 0.564007 | 1_3:+42260599 | Msa0118970:CDS |
| GGAAGCAGTTGGTTGTCAGA+TGG | 0.564032 | 1_3:+42260610 | Msa0118970:CDS |
| TTTACACAGTTATAGAACTA+GGG | 0.564228 | 1_3:+42264809 | Msa0118970:three_prime_UTR |
| TAAAATGCATAGTTACAGAA+AGG | 0.565180 | 1_3:-42265076 | None:intergenic |
| ATAGAACTAGGGCGTTCGAT+CGG | 0.570562 | 1_3:+42264820 | Msa0118970:three_prime_UTR |
| TGGTGGGATTGCAAAGTCCT+TGG | 0.575419 | 1_3:+42262619 | Msa0118970:CDS |
| AACTATAAATAATGTTACAC+AGG | 0.578612 | 1_3:-42264734 | None:intergenic |
| TCCATAAGTACCCTCGTCAC+GGG | 0.581708 | 1_3:-42263932 | None:intergenic |
| TATGGAAAGTGGGAAGAGAG+GGG | 0.584235 | 1_3:+42259158 | Msa0118970:CDS |
| GCTCTTCCAAAGCTACATGA+AGG | 0.584743 | 1_3:-42259045 | None:intergenic |
| GTTCTGTGTGACAGACACTT+TGG | 0.585250 | 1_3:+42262569 | Msa0118970:CDS |
| TAGAAAATGTAAAATAGAGA+GGG | 0.586335 | 1_3:+42258638 | None:intergenic |
| AATGATGAATCAAGTATAGT+CGG | 0.590388 | 1_3:-42263299 | None:intergenic |
| AATATCAAATGCTACCAGAT+GGG | 0.590986 | 1_3:+42262856 | Msa0118970:CDS |
| AATGCCACGCAGCATTCCAA+AGG | 0.592149 | 1_3:+42263957 | Msa0118970:CDS |
| GATTCATCATTAGCTCCTGA+AGG | 0.593456 | 1_3:+42263311 | Msa0118970:CDS |
| CTGTGTGACAGACACTTTGG+TGG | 0.593994 | 1_3:+42262572 | Msa0118970:CDS |
| CTAGAAAATGTAAAATAGAG+AGG | 0.594212 | 1_3:+42258637 | None:intergenic |
| ACGAGTATTATCACCGAGCA+GGG | 0.595181 | 1_3:+42262692 | Msa0118970:CDS |
| TCTTGTCCATCAAATTGCGA+TGG | 0.607687 | 1_3:-42264906 | None:intergenic |
| GTAGGAGTGAGGCTTTCAGA+TGG | 0.611899 | 1_3:+42262809 | Msa0118970:CDS |
| GGTGTGATGGTAGATGATGG+GGG | 0.615243 | 1_3:-42258998 | None:intergenic |
| GTTGGAGCTAAAATCGCTTG+AGG | 0.617285 | 1_3:+42260909 | Msa0118970:CDS |
| GGGATTAACTACCCTCTTGG+GGG | 0.619406 | 1_3:+42262593 | Msa0118970:CDS |
| AGCAGTTGGTTGTCAGATGG+AGG | 0.621877 | 1_3:+42260613 | Msa0118970:CDS |
| GGGTAGTCAGATACTTTACA+AGG | 0.622656 | 1_3:+42262661 | Msa0118970:CDS |
| GCAAAAGGTCTAGTTGATCA+GGG | 0.623548 | 1_3:+42262641 | Msa0118970:CDS |
| GAGAAGTATGTTATACCTGG+TGG | 0.624831 | 1_3:+42259282 | Msa0118970:CDS |
| CCCTGGACAAGGTGTTATTG+CGG | 0.630921 | 1_3:+42264156 | Msa0118970:CDS |
| TCTATAACTGTGTAAATGCG+AGG | 0.632971 | 1_3:-42264802 | None:intergenic |
| CCGCAATAACACCTTGTCCA+GGG | 0.633374 | 1_3:-42264156 | None:intergenic |
| TCTGGGTCACGCTCAAATGG+TGG | 0.644373 | 1_3:+42259078 | Msa0118970:CDS |
| TAAAACCCAGAACTTCCACC+AGG | 0.645610 | 1_3:-42259297 | None:intergenic |
| GCAGCTATAGAATCCCGCAT+TGG | 0.651693 | 1_3:-42264944 | None:intergenic |
| ACGATACTTAGCCCGTGACG+AGG | 0.654000 | 1_3:+42263921 | Msa0118970:CDS |
| GTTGTCTTTCATAGATGCCG+AGG | 0.659599 | 1_3:+42261781 | Msa0118970:CDS |
| GAGTATAGGAGAATTGAGCA+TGG | 0.660806 | 1_3:-42258959 | None:intergenic |
| TGTGCACTCGAACAGAGAGG+TGG | 0.665428 | 1_3:-42260676 | None:intergenic |
| CGATACTTAGCCCGTGACGA+GGG | 0.667190 | 1_3:+42263922 | Msa0118970:CDS |
| GTTTGGTAGATGAAAATGAA+CGG | 0.671466 | 1_3:-42260654 | None:intergenic |
| AACCCCTTTGGAATGCTGCG+TGG | 0.680893 | 1_3:-42263961 | None:intergenic |
| TCTATGAAAGACAACAACTG+TGG | 0.688384 | 1_3:-42261773 | None:intergenic |
| CTCTGTGCACTCGAACAGAG+AGG | 0.688933 | 1_3:-42260679 | None:intergenic |
| ATATGAGGCAAAGAAGCAGG+TGG | 0.703400 | 1_3:+42263571 | Msa0118970:CDS |
| ATTGATGAAAGTGAAAGGGA+TGG | 0.714978 | 1_3:+42259116 | Msa0118970:CDS |
| TGGTGACAATCTGTATCTGG+TGG | 0.718339 | 1_3:-42263121 | None:intergenic |
| TGCCACGCAGCATTCCAAAG+GGG | 0.750458 | 1_3:+42263959 | Msa0118970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATTTTTAA+TGG | - | chr1_3:42258782-42258801 | None:intergenic | 0.0% |
| !! | AAAAAAATTAATTACAAAAG+CGG | - | chr1_3:42260840-42260859 | None:intergenic | 10.0% |
| !!! | ATTGTATTTTTATTTTTTGT+TGG | + | chr1_3:42264760-42264779 | Msa0118970:three_prime_UTR | 10.0% |
| !!! | TTGTATTTTTATTTTTTGTT+GGG | + | chr1_3:42264761-42264780 | Msa0118970:three_prime_UTR | 10.0% |
| !! | GTTTATATAAGAAATTCATA+GGG | + | chr1_3:42259808-42259827 | Msa0118970:intron | 15.0% |
| !!! | AATTATTTTTGTATTTGTCT+AGG | + | chr1_3:42260191-42260210 | Msa0118970:intron | 15.0% |
| !!! | AATGTATTTTATCTTTTTCA+TGG | + | chr1_3:42260365-42260384 | Msa0118970:intron | 15.0% |
| !! | TAATTATTGTTTATGTTGAA+TGG | + | chr1_3:42260506-42260525 | Msa0118970:intron | 15.0% |
| !! | ACTTATAATTCAAATAATTG+AGG | + | chr1_3:42261153-42261172 | Msa0118970:intron | 15.0% |
| !! | CTTATAATTCAAATAATTGA+GGG | + | chr1_3:42261154-42261173 | Msa0118970:intron | 15.0% |
| !! | TTATAATTCAAATAATTGAG+GGG | + | chr1_3:42261155-42261174 | Msa0118970:intron | 15.0% |
| !! | AAAAAGATGTAACATTATTA+CGG | + | chr1_3:42261512-42261531 | Msa0118970:intron | 15.0% |
| !!! | ATCAATATTTTCATATGATT+TGG | + | chr1_3:42261658-42261677 | Msa0118970:intron | 15.0% |
| !! | CATTTATTATGAAAATAATG+TGG | - | chr1_3:42261881-42261900 | None:intergenic | 15.0% |
| !! | AAAATTAATCAAATAAGAAG+CGG | - | chr1_3:42262541-42262560 | None:intergenic | 15.0% |
| !!! | AGATTTCAACTTTATTTTAT+TGG | - | chr1_3:42263410-42263429 | None:intergenic | 15.0% |
| !! | TAATATATTAAATGAGTGTT+TGG | - | chr1_3:42264481-42264500 | None:intergenic | 15.0% |
| !! | TTATTATTAAAAAATAGGGT+TGG | + | chr1_3:42264603-42264622 | Msa0118970:intron | 15.0% |
| !!! | TGTATTTTTATTTTTTGTTG+GGG | + | chr1_3:42264762-42264781 | Msa0118970:three_prime_UTR | 15.0% |
| !!! | GTTATTTTTTGGTAAGAAAA+TGG | - | chr1_3:42258933-42258952 | None:intergenic | 20.0% |
| !! | AAAATTTGCAACACATTTAT+AGG | + | chr1_3:42259721-42259740 | Msa0118970:intron | 20.0% |
| !! | AAATTTGCAACACATTTATA+GGG | + | chr1_3:42259722-42259741 | Msa0118970:intron | 20.0% |
| !! | AAAGAAATTGCTCAATTTAT+AGG | + | chr1_3:42259784-42259803 | Msa0118970:intron | 20.0% |
| !! | AAGAAATTGCTCAATTTATA+GGG | + | chr1_3:42259785-42259804 | Msa0118970:intron | 20.0% |
| !! | GGTTTATATAAGAAATTCAT+AGG | + | chr1_3:42259807-42259826 | Msa0118970:intron | 20.0% |
| !!! | ACAAGAAATTGCAAAAATTT+TGG | + | chr1_3:42259837-42259856 | Msa0118970:intron | 20.0% |
| !!! | CAAGAAATTGCAAAAATTTT+GGG | + | chr1_3:42259838-42259857 | Msa0118970:intron | 20.0% |
| !!! | ACTGTTTTCATATAAGTTAT+AGG | - | chr1_3:42260028-42260047 | None:intergenic | 20.0% |
| !! | TATTGTGCTTATATATTAGT+AGG | - | chr1_3:42260217-42260236 | None:intergenic | 20.0% |
| !! | TTTCTTAAATTACTTCTCAT+AGG | - | chr1_3:42260328-42260347 | None:intergenic | 20.0% |
| !! | TTAAAAGTCTATATTTGTGA+TGG | + | chr1_3:42260862-42260881 | Msa0118970:intron | 20.0% |
| !!! | ATTTGTTTGTTTTGAATATG+AGG | + | chr1_3:42261004-42261023 | Msa0118970:intron | 20.0% |
| !!! | ACTAATACTACCTTTAAAAT+TGG | - | chr1_3:42261053-42261072 | None:intergenic | 20.0% |
| !! | AAAAGATGTAACATTATTAC+GGG | + | chr1_3:42261513-42261532 | Msa0118970:intron | 20.0% |
| !! | AATGCAATTGAAAATTTGAA+AGG | + | chr1_3:42261557-42261576 | Msa0118970:intron | 20.0% |
| !! | ATGCAATTGAAAATTTGAAA+GGG | + | chr1_3:42261558-42261577 | Msa0118970:intron | 20.0% |
| !!! | ATTTTCATTCATAAAATCTC+TGG | + | chr1_3:42261966-42261985 | Msa0118970:intron | 20.0% |
| !!! | TCTTTTCATCATTTTAGAAT+CGG | - | chr1_3:42262381-42262400 | None:intergenic | 20.0% |
| !! | AAATTAATCAAATAAGAAGC+GGG | - | chr1_3:42262540-42262559 | None:intergenic | 20.0% |
| !!! | ATTTTGAGATTTACATGTAT+CGG | - | chr1_3:42263505-42263524 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTAACAATGTA+CGG | - | chr1_3:42263748-42263767 | None:intergenic | 20.0% |
| !! | ACACATAAATAATCAAGATT+TGG | - | chr1_3:42263856-42263875 | None:intergenic | 20.0% |
| !! | TAAAATAATGATTCAATGAC+AGG | + | chr1_3:42264021-42264040 | Msa0118970:intron | 20.0% |
| !! | AACTATAAATAATGTTACAC+AGG | - | chr1_3:42264737-42264756 | None:intergenic | 20.0% |
| !!! | AAAAGAAAATTTTGTAAAGC+TGG | + | chr1_3:42264869-42264888 | Msa0118970:three_prime_UTR | 20.0% |
| !! | TTAATTGTTATGAGTTTAAC+TGG | + | chr1_3:42265166-42265185 | Msa0118970:intron | 20.0% |
| !! | TAAAATGTAGTTACAAAAGT+AGG | + | chr1_3:42265268-42265287 | Msa0118970:intron | 20.0% |
| !! | AAAATGTAGTTACAAAAGTA+GGG | + | chr1_3:42265269-42265288 | Msa0118970:intron | 20.0% |
| !!! | ACAAAACAATATATTTTCAG+TGG | + | chr1_3:42265299-42265318 | Msa0118970:intron | 20.0% |
| !!! | AATTCCGAGTTTTAAAATAG+AGG | + | chr1_3:42258664-42258683 | Msa0118970:five_prime_UTR | 25.0% |
| !!! | ATTCCGAGTTTTAAAATAGA+GGG | + | chr1_3:42258665-42258684 | Msa0118970:five_prime_UTR | 25.0% |
| !!! | TTCAGTTTTAGTCAAAATAG+AGG | + | chr1_3:42258695-42258714 | Msa0118970:five_prime_UTR | 25.0% |
| !!! | TCAGTTTTAGTCAAAATAGA+GGG | + | chr1_3:42258696-42258715 | Msa0118970:five_prime_UTR | 25.0% |
| ! | TGGAAGACTTAAAAAAAACA+AGG | - | chr1_3:42258740-42258759 | None:intergenic | 25.0% |
| !! | GAATCAATTTTATGAGTAAG+TGG | + | chr1_3:42258832-42258851 | Msa0118970:five_prime_UTR | 25.0% |
| ! | TAATGCCATGAAAATGATAA+TGG | - | chr1_3:42258866-42258885 | None:intergenic | 25.0% |
| !!! | CATGGTTGTTAGTTATTTTT+TGG | - | chr1_3:42258944-42258963 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr1_3:42259608-42259627 | Msa0118970:intron | 25.0% |
| ! | AATTTGCAACACATTTATAG+GGG | + | chr1_3:42259723-42259742 | Msa0118970:intron | 25.0% |
| ! | AGAAATTGCTCAATTTATAG+GGG | + | chr1_3:42259786-42259805 | Msa0118970:intron | 25.0% |
| ! | GATTCTTTCAAAATCTATCA+CGG | - | chr1_3:42260006-42260025 | None:intergenic | 25.0% |
| ! | AATATTCTATGTTAGCATCA+AGG | + | chr1_3:42260233-42260252 | Msa0118970:intron | 25.0% |
| !!! | AGGACTTTCCTTTTTAATTA+GGG | - | chr1_3:42260308-42260327 | None:intergenic | 25.0% |
| !!! | TAGGACTTTCCTTTTTAATT+AGG | - | chr1_3:42260309-42260328 | None:intergenic | 25.0% |
| ! | ATTTAAGAAACCAAGAACAA+AGG | + | chr1_3:42260338-42260357 | Msa0118970:intron | 25.0% |
| ! | CAGAAATCAATATTTACCTA+AGG | - | chr1_3:42260413-42260432 | None:intergenic | 25.0% |
| ! | ATGTACCTTAAATTTGTGTA+GGG | + | chr1_3:42260560-42260579 | Msa0118970:intron | 25.0% |
| ! | AAAATTAATTACAAAAGCGG+AGG | - | chr1_3:42260837-42260856 | None:intergenic | 25.0% |
| !!! | TACCTTTAAAATTGGAGTTT+GGG | - | chr1_3:42261045-42261064 | None:intergenic | 25.0% |
| !! | TTCTTTGCATTTTCATTGAT+AGG | + | chr1_3:42261095-42261114 | Msa0118970:intron | 25.0% |
| !! | TCTTTGCATTTTCATTGATA+GGG | + | chr1_3:42261096-42261115 | Msa0118970:intron | 25.0% |
| ! | TCAATTTGGTCCTATATTTA+GGG | - | chr1_3:42261361-42261380 | None:intergenic | 25.0% |
| ! | TGCAATTGAAAATTTGAAAG+GGG | + | chr1_3:42261559-42261578 | Msa0118970:intron | 25.0% |
| ! | TATTAAAAGGAGGTAGTATA+TGG | + | chr1_3:42261585-42261604 | Msa0118970:intron | 25.0% |
| ! | TATTGATACAATGCTCAATT+AGG | - | chr1_3:42261645-42261664 | None:intergenic | 25.0% |
| !! | TGATGATGTACGTTATTATA+TGG | + | chr1_3:42261694-42261713 | Msa0118970:intron | 25.0% |
| ! | TGACTCTTTCTATGAAAAAT+AGG | - | chr1_3:42261845-42261864 | None:intergenic | 25.0% |
| ! | GAATGATTAATGAATGAGTA+GGG | - | chr1_3:42261923-42261942 | None:intergenic | 25.0% |
| ! | TGAATGATTAATGAATGAGT+AGG | - | chr1_3:42261924-42261943 | None:intergenic | 25.0% |
| ! | GAATGAAAATTACTAATCAC+AGG | - | chr1_3:42261956-42261975 | None:intergenic | 25.0% |
| !! | ATTTGATTAATTTTGTGTCC+AGG | + | chr1_3:42262547-42262566 | Msa0118970:intron | 25.0% |
| ! | ATTGTAGGAAAGTTAGTAAA+AGG | + | chr1_3:42263001-42263020 | Msa0118970:intron | 25.0% |
| ! | ATGTGTATTGAAAGAAAAGA+TGG | - | chr1_3:42263079-42263098 | None:intergenic | 25.0% |
| !! | ATCTTTTCTTTCAATACACA+TGG | + | chr1_3:42263078-42263097 | Msa0118970:CDS | 25.0% |
| !! | TCTTTTCTTTCAATACACAT+GGG | + | chr1_3:42263079-42263098 | Msa0118970:CDS | 25.0% |
| ! | GCTATATAGATTTATAGTTG+AGG | - | chr1_3:42263174-42263193 | None:intergenic | 25.0% |
| ! | TCATTCATTCAAAGTTATCA+AGG | - | chr1_3:42263196-42263215 | None:intergenic | 25.0% |
| !! | GATAACTTTTTGTATTTCAC+TGG | + | chr1_3:42263214-42263233 | Msa0118970:intron | 25.0% |
| ! | AATGATGAATCAAGTATAGT+CGG | - | chr1_3:42263302-42263321 | None:intergenic | 25.0% |
| ! | AAGAAGTTGTGAATATATGA+AGG | - | chr1_3:42263346-42263365 | None:intergenic | 25.0% |
| ! | TATATTCACAACTTCTTCAA+TGG | + | chr1_3:42263349-42263368 | Msa0118970:CDS | 25.0% |
| ! | TATGACAAATATGTCTTCTA+GGG | - | chr1_3:42263793-42263812 | None:intergenic | 25.0% |
| ! | ATATGACAAATATGTCTTCT+AGG | - | chr1_3:42263794-42263813 | None:intergenic | 25.0% |
| ! | AAACTTACAGTTGTGTTAAA+CGG | - | chr1_3:42263997-42264016 | None:intergenic | 25.0% |
| ! | TGACATATTTATATCGTGTT+TGG | + | chr1_3:42264356-42264375 | Msa0118970:intron | 25.0% |
| !! | ACTCATTTGAATGTAGTTTT+AGG | - | chr1_3:42264388-42264407 | None:intergenic | 25.0% |
| ! | CATTGAAATAAACAAAAGCA+CGG | - | chr1_3:42264453-42264472 | None:intergenic | 25.0% |
| !!! | TGCTTTTGTTTATTTCAATG+CGG | + | chr1_3:42264453-42264472 | Msa0118970:intron | 25.0% |
| !!! | ATTTTTATTTTTTGTTGGGG+AGG | + | chr1_3:42264765-42264784 | Msa0118970:three_prime_UTR | 25.0% |
| !!! | TTTTTATTTTTTGTTGGGGA+GGG | + | chr1_3:42264766-42264785 | Msa0118970:three_prime_UTR | 25.0% |
| ! | ATTTACACAGTTATAGAACT+AGG | + | chr1_3:42264808-42264827 | Msa0118970:three_prime_UTR | 25.0% |
| ! | TTTACACAGTTATAGAACTA+GGG | + | chr1_3:42264809-42264828 | Msa0118970:three_prime_UTR | 25.0% |
| ! | TTGTTTGGATAAAAGAAAAC+TGG | - | chr1_3:42265031-42265050 | None:intergenic | 25.0% |
| ! | TACAAGTATAACTCTTTGTT+TGG | - | chr1_3:42265046-42265065 | None:intergenic | 25.0% |
| ! | TAAAATGCATAGTTACAGAA+AGG | - | chr1_3:42265079-42265098 | None:intergenic | 25.0% |
| ! | TTAAAATAGATGTTGTGACA+TGG | - | chr1_3:42265251-42265270 | None:intergenic | 25.0% |
| AAAATGTAAAATAGAGAGGG+TGG | + | chr1_3:42258641-42258660 | Msa0118970:five_prime_UTR | 30.0% | |
| !!! | TTCCGAGTTTTAAAATAGAG+GGG | + | chr1_3:42258666-42258685 | Msa0118970:five_prime_UTR | 30.0% |
| !! | CAGTTTTAGTCAAAATAGAG+GGG | + | chr1_3:42258697-42258716 | Msa0118970:five_prime_UTR | 30.0% |
| !! | AGTTTTAGTCAAAATAGAGG+GGG | + | chr1_3:42258698-42258717 | Msa0118970:five_prime_UTR | 30.0% |
| ! | CTCATAAAATTGATTCCTAG+TGG | - | chr1_3:42258828-42258847 | None:intergenic | 30.0% |
| ! | CTTCACCATTATCATTTTCA+TGG | + | chr1_3:42258858-42258877 | Msa0118970:five_prime_UTR | 30.0% |
| ! | TTTTGGTAAGAAAATGGAAG+TGG | - | chr1_3:42258927-42258946 | None:intergenic | 30.0% |
| ! | TGATTAGAAACAGAGAGTAT+AGG | - | chr1_3:42258976-42258995 | None:intergenic | 30.0% |
| GAAGGTAAAGATTGAAACTT+TGG | - | chr1_3:42259030-42259049 | None:intergenic | 30.0% | |
| AAATGGTGGTAGAAGAAAAA+GGG | + | chr1_3:42259092-42259111 | Msa0118970:CDS | 30.0% | |
| AGGAAAAAGTTATGGAAAGT+GGG | + | chr1_3:42259148-42259167 | Msa0118970:CDS | 30.0% | |
| ! | GGTTTGATGCAATTGTTATT+GGG | + | chr1_3:42259193-42259212 | Msa0118970:CDS | 30.0% |
| !!! | AAGTTCTGGGTTTTATCATA+GGG | + | chr1_3:42259305-42259324 | Msa0118970:CDS | 30.0% |
| ! | TATGTTTGGTTTCAGTGATA+AGG | + | chr1_3:42259359-42259378 | Msa0118970:CDS | 30.0% |
| AGAGTTCAATGTTATAGTGA+AGG | + | chr1_3:42259423-42259442 | Msa0118970:intron | 30.0% | |
| ! | TTTATCCAAACATGGCTTTA+AGG | + | chr1_3:42259616-42259635 | Msa0118970:intron | 30.0% |
| !! | GCTTTAAGGTTTGTTTAGAT+TGG | + | chr1_3:42259630-42259649 | Msa0118970:intron | 30.0% |
| !!! | GTTGCAAATTTTTTTTGCCA+GGG | - | chr1_3:42259713-42259732 | None:intergenic | 30.0% |
| !!! | TGTTGCAAATTTTTTTTGCC+AGG | - | chr1_3:42259714-42259733 | None:intergenic | 30.0% |
| GGTTTACATAAGAAATTGCA+AGG | + | chr1_3:42259744-42259763 | Msa0118970:intron | 30.0% | |
| ! | AAATTGCAAAAATTTTGGGC+CGG | + | chr1_3:42259842-42259861 | Msa0118970:intron | 30.0% |
| TAAACACTTGTGATCTTGTT+AGG | + | chr1_3:42259914-42259933 | Msa0118970:intron | 30.0% | |
| AAACACTTGTGATCTTGTTA+GGG | + | chr1_3:42259915-42259934 | Msa0118970:intron | 30.0% | |
| ATAAGCTAGAAAACAACTGA+TGG | - | chr1_3:42259970-42259989 | None:intergenic | 30.0% | |
| CTACTTCTCCCTAATTAAAA+AGG | + | chr1_3:42260297-42260316 | Msa0118970:intron | 30.0% | |
| TACATTTACACCTTTGTTCT+TGG | - | chr1_3:42260351-42260370 | None:intergenic | 30.0% | |
| ! | CTACACAAATTTAAGGTACA+TGG | - | chr1_3:42260561-42260580 | None:intergenic | 30.0% |
| CATGTACCTTAAATTTGTGT+AGG | + | chr1_3:42260559-42260578 | Msa0118970:intron | 30.0% | |
| GATTACCCTACACAAATTTA+AGG | - | chr1_3:42260568-42260587 | None:intergenic | 30.0% | |
| GTTTGGTAGATGAAAATGAA+CGG | - | chr1_3:42260657-42260676 | None:intergenic | 30.0% | |
| !! | AAGTTATTTTCCCCATGAAA+AGG | + | chr1_3:42260730-42260749 | Msa0118970:CDS | 30.0% |
| AGCATTCACCATAAAATTTG+AGG | - | chr1_3:42260763-42260782 | None:intergenic | 30.0% | |
| ! | TCAAATTTTATGGTGAATGC+TGG | + | chr1_3:42260762-42260781 | Msa0118970:CDS | 30.0% |
| TCTGAAAAAACTGTCCAAAA+AGG | - | chr1_3:42260945-42260964 | None:intergenic | 30.0% | |
| !! | CTACCTTTAAAATTGGAGTT+TGG | - | chr1_3:42261046-42261065 | None:intergenic | 30.0% |
| ! | ATTTTCATTGATAGGGACTA+GGG | + | chr1_3:42261103-42261122 | Msa0118970:intron | 30.0% |
| TTGAGGGGAAACTAAATAAA+CGG | + | chr1_3:42261170-42261189 | Msa0118970:intron | 30.0% | |
| GTCAATTTGGTCCTATATTT+AGG | - | chr1_3:42261362-42261381 | None:intergenic | 30.0% | |
| AAATATAGGACCAAATTGAC+CGG | + | chr1_3:42261362-42261381 | Msa0118970:intron | 30.0% | |
| !! | TTGAAAGGGGTCTTATTAAA+AGG | + | chr1_3:42261572-42261591 | Msa0118970:intron | 30.0% |
| TACATCATCAGAAAAGCAAA+TGG | - | chr1_3:42261684-42261703 | None:intergenic | 30.0% | |
| !!! | AGCATTTTGAGGCAAATAAT+AGG | - | chr1_3:42261723-42261742 | None:intergenic | 30.0% |
| TATTATTTGCCTCAAAATGC+TGG | + | chr1_3:42261722-42261741 | Msa0118970:CDS | 30.0% | |
| ATGAAAGAAAGCAAAAAGCT+AGG | - | chr1_3:42262069-42262088 | None:intergenic | 30.0% | |
| AGTACAATAAGAACATTGCA+TGG | - | chr1_3:42262093-42262112 | None:intergenic | 30.0% | |
| TGCAACTAAAAGCAATGAAA+GGG | - | chr1_3:42262146-42262165 | None:intergenic | 30.0% | |
| ATGCAACTAAAAGCAATGAA+AGG | - | chr1_3:42262147-42262166 | None:intergenic | 30.0% | |
| !! | TTCATTGCTTTTAGTTGCAT+TGG | + | chr1_3:42262147-42262166 | Msa0118970:intron | 30.0% |
| ! | GACAAAAAAGCATACAATGT+TGG | - | chr1_3:42262234-42262253 | None:intergenic | 30.0% |
| !!! | CATTGTATGCTTTTTTGTCT+TGG | + | chr1_3:42262235-42262254 | Msa0118970:intron | 30.0% |
| ! | TGTCTTGGTAACTATACAAA+TGG | + | chr1_3:42262250-42262269 | Msa0118970:intron | 30.0% |
| ! | GTAATCTGATATGTCACTTA+CGG | - | chr1_3:42262723-42262742 | None:intergenic | 30.0% |
| ! | GATTTGTACTATACTTTTGC+AGG | + | chr1_3:42262787-42262806 | Msa0118970:intron | 30.0% |
| ! | AGCATTTGATATTACGGTTT+TGG | - | chr1_3:42262849-42262868 | None:intergenic | 30.0% |
| TCTGGTAGCATTTGATATTA+CGG | - | chr1_3:42262855-42262874 | None:intergenic | 30.0% | |
| TAATATCAAATGCTACCAGA+TGG | + | chr1_3:42262855-42262874 | Msa0118970:CDS | 30.0% | |
| AATATCAAATGCTACCAGAT+GGG | + | chr1_3:42262856-42262875 | Msa0118970:CDS | 30.0% | |
| AATGAAGGTAGACAAAAAAC+AGG | - | chr1_3:42262950-42262969 | None:intergenic | 30.0% | |
| CGGGATTAACTAATTAATGA+AGG | - | chr1_3:42262965-42262984 | None:intergenic | 30.0% | |
| AATGTAACATTATGCAGTTC+GGG | - | chr1_3:42262984-42263003 | None:intergenic | 30.0% | |
| CAATGTAACATTATGCAGTT+CGG | - | chr1_3:42262985-42263004 | None:intergenic | 30.0% | |
| ACTGCATAATGTTACATTGT+AGG | + | chr1_3:42262986-42263005 | Msa0118970:intron | 30.0% | |
| ! | CTTTTCTTTCAATACACATG+GGG | + | chr1_3:42263080-42263099 | Msa0118970:CDS | 30.0% |
| ! | TTTTCTTTCAATACACATGG+GGG | + | chr1_3:42263081-42263100 | Msa0118970:CDS | 30.0% |
| ! | TGGTACTTATCTAGAACAAT+TGG | + | chr1_3:42263234-42263253 | Msa0118970:intron | 30.0% |
| CTCAAAAAGATACTTCCATA+TGG | - | chr1_3:42263275-42263294 | None:intergenic | 30.0% | |
| TAGAACAGAAAACAAGAACA+TGG | - | chr1_3:42263533-42263552 | None:intergenic | 30.0% | |
| !!! | ATGTTCTTGTTTTCTGTTCT+AGG | + | chr1_3:42263532-42263551 | Msa0118970:intron | 30.0% |
| !!! | TGTTCTTGTTTTCTGTTCTA+GGG | + | chr1_3:42263533-42263552 | Msa0118970:intron | 30.0% |
| TTAGAGAAGAAATTGTTTCC+AGG | + | chr1_3:42263617-42263636 | Msa0118970:CDS | 30.0% | |
| CTTTACCTCTATAAAATCGA+TGG | - | chr1_3:42263654-42263673 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCCCTGAACCTTT+AGG | + | chr1_3:42263876-42263895 | Msa0118970:intron | 30.0% |
| ATTCAAATGAGTTTCAACGT+GGG | + | chr1_3:42264396-42264415 | Msa0118970:intron | 30.0% | |
| AGTTACAGAAAGGAATATCT+TGG | - | chr1_3:42265069-42265088 | None:intergenic | 30.0% | |
| ACACACAATATCAATGTAGA+TGG | + | chr1_3:42265113-42265132 | Msa0118970:intron | 30.0% | |
| GAAAAACATCCAAAGATCAA+AGG | - | chr1_3:42265145-42265164 | None:intergenic | 30.0% | |
| !!! | TCCGAGTTTTAAAATAGAGG+GGG | + | chr1_3:42258667-42258686 | Msa0118970:five_prime_UTR | 35.0% |
| !!! | ACCCCCTCTATTTTAAAACT+CGG | - | chr1_3:42258671-42258690 | None:intergenic | 35.0% |
| ! | GAAAGTGATGATGTACTGTT+TGG | - | chr1_3:42258760-42258779 | None:intergenic | 35.0% |
| ! | AAGATTGAAACTTTGGAGGT+GGG | - | chr1_3:42259023-42259042 | None:intergenic | 35.0% |
| ! | AAAGATTGAAACTTTGGAGG+TGG | - | chr1_3:42259024-42259043 | None:intergenic | 35.0% |
| GGTAAAGATTGAAACTTTGG+AGG | - | chr1_3:42259027-42259046 | None:intergenic | 35.0% | |
| TCTTTACCTTCATGTAGCTT+TGG | + | chr1_3:42259039-42259058 | Msa0118970:CDS | 35.0% | |
| ! | GAAGAGCTGAATTTTCATCT+GGG | + | chr1_3:42259061-42259080 | Msa0118970:CDS | 35.0% |
| CAAATGGTGGTAGAAGAAAA+AGG | + | chr1_3:42259091-42259110 | Msa0118970:CDS | 35.0% | |
| !! | AGGGTATTGATGAAAGTGAA+AGG | + | chr1_3:42259111-42259130 | Msa0118970:CDS | 35.0% |
| !! | GGGTATTGATGAAAGTGAAA+GGG | + | chr1_3:42259112-42259131 | Msa0118970:CDS | 35.0% |
| ATTGATGAAAGTGAAAGGGA+TGG | + | chr1_3:42259116-42259135 | Msa0118970:CDS | 35.0% | |
| GAAGTTGGAGGAAAAAGTTA+TGG | + | chr1_3:42259140-42259159 | Msa0118970:CDS | 35.0% | |
| GAGGAAAAAGTTATGGAAAG+TGG | + | chr1_3:42259147-42259166 | Msa0118970:CDS | 35.0% | |
| GGGTTTGATGCAATTGTTAT+TGG | + | chr1_3:42259192-42259211 | Msa0118970:CDS | 35.0% | |
| ! | ATGCAATTGTTATTGGGTCT+GGG | + | chr1_3:42259199-42259218 | Msa0118970:CDS | 35.0% |
| !! | TGTGAAAGGTGCAAAAGTTT+TGG | + | chr1_3:42259254-42259273 | Msa0118970:CDS | 35.0% |
| !!! | AGGTGCAAAAGTTTTGGTTT+TGG | + | chr1_3:42259260-42259279 | Msa0118970:CDS | 35.0% |
| ! | TTGGAGAAGTATGTTATACC+TGG | + | chr1_3:42259279-42259298 | Msa0118970:CDS | 35.0% |
| !!! | GAAGTTCTGGGTTTTATCAT+AGG | + | chr1_3:42259304-42259323 | Msa0118970:CDS | 35.0% |
| ! | TTTGGTTTCAGTGATAAGGT+TGG | + | chr1_3:42259363-42259382 | Msa0118970:intron | 35.0% |
| ACAAACCTTAAAGCCATGTT+TGG | - | chr1_3:42259624-42259643 | None:intergenic | 35.0% | |
| TACCTAATAGCATAAACCAG+TGG | + | chr1_3:42259665-42259684 | Msa0118970:intron | 35.0% | |
| ATCACAAGTGTTTATGCCAT+GGG | - | chr1_3:42259908-42259927 | None:intergenic | 35.0% | |
| AATCTATCACGGAGAACTTA+TGG | - | chr1_3:42259995-42260014 | None:intergenic | 35.0% | |
| ! | AGGGACTAATTGTTTCTTTC+TGG | + | chr1_3:42260134-42260153 | Msa0118970:intron | 35.0% |
| !! | GCTATGCTTTAGAAATGGAA+TGG | + | chr1_3:42260159-42260178 | Msa0118970:intron | 35.0% |
| ! | AGGCCATTGTTATTAGTTAG+TGG | + | chr1_3:42260253-42260272 | Msa0118970:intron | 35.0% |
| ! | GTGCCACTAACTAATAACAA+TGG | - | chr1_3:42260259-42260278 | None:intergenic | 35.0% |
| TATTTACCTAAGGCAACTCA+TGG | - | chr1_3:42260403-42260422 | None:intergenic | 35.0% | |
| ! | CCTCAAGCTATTATTGACTA+AGG | - | chr1_3:42260476-42260495 | None:intergenic | 35.0% |
| CCTTAGTCAATAATAGCTTG+AGG | + | chr1_3:42260473-42260492 | Msa0118970:intron | 35.0% | |
| ! | CAACTTGATAACACAAGCAT+TGG | + | chr1_3:42260589-42260608 | Msa0118970:CDS | 35.0% |
| AGATGAAAATGAACGGTTGT+CGG | - | chr1_3:42260650-42260669 | None:intergenic | 35.0% | |
| ! | TATTTTCCCCATGAAAAGGA+CGG | + | chr1_3:42260734-42260753 | Msa0118970:CDS | 35.0% |
| ! | ATTTTATGGTGAATGCTGGA+AGG | + | chr1_3:42260766-42260785 | Msa0118970:CDS | 35.0% |
| TGGAAGGTTTGTCTTAATTG+AGG | + | chr1_3:42260782-42260801 | Msa0118970:intron | 35.0% | |
| ! | TTTCAATGCTCTGAATTCGT+TGG | + | chr1_3:42260891-42260910 | Msa0118970:CDS | 35.0% |
| ! | CTCCCAAACTCCAATTTTAA+AGG | + | chr1_3:42261040-42261059 | Msa0118970:intron | 35.0% |
| ! | TATTAGTTTCTATTGCCACC+TGG | + | chr1_3:42261066-42261085 | Msa0118970:intron | 35.0% |
| AAATGCAAAGAAGATATGCC+AGG | - | chr1_3:42261087-42261106 | None:intergenic | 35.0% | |
| ! | CATTTTCATTGATAGGGACT+AGG | + | chr1_3:42261102-42261121 | Msa0118970:intron | 35.0% |
| AAGTGAAGCAGTATTACTCT+TGG | + | chr1_3:42261239-42261258 | Msa0118970:intron | 35.0% | |
| TTTGTGTACCCGAATTCATA+TGG | + | chr1_3:42261267-42261286 | Msa0118970:intron | 35.0% | |
| GTTGTCTACCATATGAATTC+GGG | - | chr1_3:42261278-42261297 | None:intergenic | 35.0% | |
| GGTTGTCTACCATATGAATT+CGG | - | chr1_3:42261279-42261298 | None:intergenic | 35.0% | |
| AACTCATTCTCTCTCTTGAA+GGG | - | chr1_3:42261457-42261476 | None:intergenic | 35.0% | |
| AAACTCATTCTCTCTCTTGA+AGG | - | chr1_3:42261458-42261477 | None:intergenic | 35.0% | |
| TAACATTATTACGGGTTTGC+TGG | + | chr1_3:42261521-42261540 | Msa0118970:intron | 35.0% | |
| !! | AAAGGGGTCTTATTAAAAGG+AGG | + | chr1_3:42261575-42261594 | Msa0118970:intron | 35.0% |
| TCTATGAAAGACAACAACTG+TGG | - | chr1_3:42261776-42261795 | None:intergenic | 35.0% | |
| ATAACTAGTTGCATCTACCT+CGG | - | chr1_3:42261801-42261820 | None:intergenic | 35.0% | |
| AGTTATTCGATTCTGTCAGA+AGG | + | chr1_3:42261815-42261834 | Msa0118970:intron | 35.0% | |
| TCCAATGATTAATGCTAGCA+TGG | + | chr1_3:42262032-42262051 | Msa0118970:CDS | 35.0% | |
| ACCATGCTAGCATTAATCAT+TGG | - | chr1_3:42262036-42262055 | None:intergenic | 35.0% | |
| AAAGCATACAATGTTGGACT+TGG | - | chr1_3:42262228-42262247 | None:intergenic | 35.0% | |
| CAAAACATCGTACACAACAA+TGG | - | chr1_3:42262329-42262348 | None:intergenic | 35.0% | |
| ! | CATTGTTGTGTACGATGTTT+TGG | + | chr1_3:42262327-42262346 | Msa0118970:intron | 35.0% |
| ! | TGTACTATACTTTTGCAGGT+AGG | + | chr1_3:42262791-42262810 | Msa0118970:intron | 35.0% |
| ! | TGAAAGTTCTCTTCCTCTTT+TGG | - | chr1_3:42263037-42263056 | None:intergenic | 35.0% |
| AAATGGTGACAATCTGTATC+TGG | - | chr1_3:42263127-42263146 | None:intergenic | 35.0% | |
| !! | TTTTATTGGTTACCACTGCT+CGG | - | chr1_3:42263396-42263415 | None:intergenic | 35.0% |
| ! | AGTCATAGAAGCACACAAAA+GGG | - | chr1_3:42263436-42263455 | None:intergenic | 35.0% |
| ! | AAGTCATAGAAGCACACAAA+AGG | - | chr1_3:42263437-42263456 | None:intergenic | 35.0% |
| TCTCTCAAGAACTGAATATG+AGG | + | chr1_3:42263556-42263575 | Msa0118970:CDS | 35.0% | |
| !!! | AGCATCCATCGATTTTATAG+AGG | + | chr1_3:42263646-42263665 | Msa0118970:CDS | 35.0% |
| ACGGATTTGCAAAAAGAATG+AGG | - | chr1_3:42263690-42263709 | None:intergenic | 35.0% | |
| !! | AGGTCAGAGGTTTTAATGTA+CGG | - | chr1_3:42263709-42263728 | None:intergenic | 35.0% |
| ACGGATTTGCAAAAAGAATG+AGG | - | chr1_3:42263690-42263709 | None:intergenic | 35.0% | |
| !! | AAGTATCGTCGATGTGTTTT+TGG | - | chr1_3:42263910-42263929 | None:intergenic | 35.0% |
| !! | CTCTGAAAGCAAGTTTTATC+GGG | - | chr1_3:42264100-42264119 | None:intergenic | 35.0% |
| !!! | GCTCTGAAAGCAAGTTTTAT+CGG | - | chr1_3:42264101-42264120 | None:intergenic | 35.0% |
| ATAGATGGTCTTTACTGTGT+TGG | + | chr1_3:42264121-42264140 | Msa0118970:CDS | 35.0% | |
| TTGCAAACAGTTTACAGCTA+TGG | - | chr1_3:42264251-42264270 | None:intergenic | 35.0% | |
| CATTCAAATGAGTTTCAACG+TGG | + | chr1_3:42264395-42264414 | Msa0118970:intron | 35.0% | |
| !! | AAAAAGTCACCTGTTTTGGA+CGG | + | chr1_3:42264628-42264647 | Msa0118970:CDS | 35.0% |
| TCTATAACTGTGTAAATGCG+AGG | - | chr1_3:42264805-42264824 | None:intergenic | 35.0% | |
| GTTGTGACATGGAAAAATAG+CGG | - | chr1_3:42265240-42265259 | None:intergenic | 35.0% | |
| TTATTTGTCGTCGTTCCACT+AGG | + | chr1_3:42258810-42258829 | Msa0118970:five_prime_UTR | 40.0% | |
| GAGTATAGGAGAATTGAGCA+TGG | - | chr1_3:42258962-42258981 | None:intergenic | 40.0% | |
| ! | AGATTGAAACTTTGGAGGTG+GGG | - | chr1_3:42259022-42259041 | None:intergenic | 40.0% |
| ! | GGAAGAGCTGAATTTTCATC+TGG | + | chr1_3:42259060-42259079 | Msa0118970:CDS | 40.0% |
| TTATGGAAAGTGGGAAGAGA+GGG | + | chr1_3:42259157-42259176 | Msa0118970:CDS | 40.0% | |
| !! | AAGAGAGGGGATTTTAGTGA+AGG | + | chr1_3:42259171-42259190 | Msa0118970:CDS | 40.0% |
| !! | AGAGAGGGGATTTTAGTGAA+GGG | + | chr1_3:42259172-42259191 | Msa0118970:CDS | 40.0% |
| ! | GATGCAATTGTTATTGGGTC+TGG | + | chr1_3:42259198-42259217 | Msa0118970:CDS | 40.0% |
| ! | ATTGTTATTGGGTCTGGGAT+TGG | + | chr1_3:42259204-42259223 | Msa0118970:CDS | 40.0% |
| ! | GAGAAGTATGTTATACCTGG+TGG | + | chr1_3:42259282-42259301 | Msa0118970:CDS | 40.0% |
| TTATACCTGGTGGAAGTTCT+GGG | + | chr1_3:42259292-42259311 | Msa0118970:CDS | 40.0% | |
| !! | TTCTGGGTTTTATCATAGGG+AGG | + | chr1_3:42259308-42259327 | Msa0118970:CDS | 40.0% |
| !! | TCTGGGTTTTATCATAGGGA+GGG | + | chr1_3:42259309-42259328 | Msa0118970:CDS | 40.0% |
| !! | GAGGGGTATACTTTTGATGT+TGG | + | chr1_3:42259327-42259346 | Msa0118970:CDS | 40.0% |
| ! | GTTGGCTCTTCTGTTATGTT+TGG | + | chr1_3:42259345-42259364 | Msa0118970:CDS | 40.0% |
| CTAATAGCATAAACCAGTGG+CGG | + | chr1_3:42259668-42259687 | Msa0118970:intron | 40.0% | |
| GATCACAAGTGTTTATGCCA+TGG | - | chr1_3:42259909-42259928 | None:intergenic | 40.0% | |
| AGAAACAATTAGTCCCTGCT+GGG | - | chr1_3:42260131-42260150 | None:intergenic | 40.0% | |
| AAGAAACAATTAGTCCCTGC+TGG | - | chr1_3:42260132-42260151 | None:intergenic | 40.0% | |
| !! | TGGCTGCTATGCTTTAGAAA+TGG | + | chr1_3:42260154-42260173 | Msa0118970:intron | 40.0% |
| ! | GACGGCATCCTCAAATTTTA+TGG | + | chr1_3:42260752-42260771 | Msa0118970:CDS | 40.0% |
| AACTGTCCAAAAAGGTAGAG+TGG | - | chr1_3:42260937-42260956 | None:intergenic | 40.0% | |
| CCTAATGTCAAGCATTCAAC+TGG | - | chr1_3:42260970-42260989 | None:intergenic | 40.0% | |
| CCAGTTGAATGCTTGACATT+AGG | + | chr1_3:42260967-42260986 | Msa0118970:CDS | 40.0% | |
| !! | ACAACCTGTGTCGACTTATA+TGG | + | chr1_3:42261293-42261312 | Msa0118970:intron | 40.0% |
| TCATCCATATAAGTCGACAC+AGG | - | chr1_3:42261300-42261319 | None:intergenic | 40.0% | |
| CCTATATTTAGGGATAGAGG+TGG | - | chr1_3:42261351-42261370 | None:intergenic | 40.0% | |
| CCACCTCTATCCCTAAATAT+AGG | + | chr1_3:42261348-42261367 | Msa0118970:intron | 40.0% | |
| GGTCCTATATTTAGGGATAG+AGG | - | chr1_3:42261354-42261373 | None:intergenic | 40.0% | |
| GGAATTCAGAATGTTGCTAC+TGG | + | chr1_3:42261391-42261410 | Msa0118970:intron | 40.0% | |
| CTGAATATACTTCCTGGCTA+TGG | - | chr1_3:42261750-42261769 | None:intergenic | 40.0% | |
| ! | CATAGCCAGGAAGTATATTC+AGG | + | chr1_3:42261748-42261767 | Msa0118970:CDS | 40.0% |
| TGGATCCTGAATATACTTCC+TGG | - | chr1_3:42261756-42261775 | None:intergenic | 40.0% | |
| ! | TCACTGTCATTCTAGCTATC+TGG | - | chr1_3:42262193-42262212 | None:intergenic | 40.0% |
| CGTACACAACAATGGAAGAA+TGG | - | chr1_3:42262321-42262340 | None:intergenic | 40.0% | |
| !! | AGAAGCACCTTTGGAAATGT+AGG | + | chr1_3:42262407-42262426 | Msa0118970:intron | 40.0% |
| ! | GAAGCACCTTTGGAAATGTA+GGG | + | chr1_3:42262408-42262427 | Msa0118970:intron | 40.0% |
| TGTCATCCCTACATTTCCAA+AGG | - | chr1_3:42262417-42262436 | None:intergenic | 40.0% | |
| GCAAAAGGTCTAGTTGATCA+GGG | + | chr1_3:42262641-42262660 | Msa0118970:CDS | 40.0% | |
| GGGTAGTCAGATACTTTACA+AGG | + | chr1_3:42262661-42262680 | Msa0118970:CDS | 40.0% | |
| ! | TTGTCACCATTTTGTGCTTG+AGG | + | chr1_3:42263135-42263154 | Msa0118970:CDS | 40.0% |
| CAACTACCTCAAGCACAAAA+TGG | - | chr1_3:42263144-42263163 | None:intergenic | 40.0% | |
| ! | CATTTTGTGCTTGAGGTAGT+TGG | + | chr1_3:42263142-42263161 | Msa0118970:intron | 40.0% |
| CTAGAACAATTGGACCAGTT+TGG | + | chr1_3:42263244-42263263 | Msa0118970:intron | 40.0% | |
| GATTCATCATTAGCTCCTGA+AGG | + | chr1_3:42263311-42263330 | Msa0118970:CDS | 40.0% | |
| CAACTTCTTCAATGGACGAT+TGG | + | chr1_3:42263357-42263376 | Msa0118970:CDS | 40.0% | |
| ! | GTCATAGAAGCACACAAAAG+GGG | - | chr1_3:42263435-42263454 | None:intergenic | 40.0% |
| TGAATATGAGGCAAAGAAGC+AGG | + | chr1_3:42263568-42263587 | Msa0118970:CDS | 40.0% | |
| TGCAAAAAGAATGAGGTCAG+CGG | - | chr1_3:42263683-42263702 | None:intergenic | 40.0% | |
| TGCAAAAAGAATGAGGTCAG+AGG | - | chr1_3:42263683-42263702 | None:intergenic | 40.0% | |
| ! | TTTTCCCTGAACCTTTAGGT+AGG | + | chr1_3:42263880-42263899 | Msa0118970:intron | 40.0% |
| TTTCCCTGAACCTTTAGGTA+GGG | + | chr1_3:42263881-42263900 | Msa0118970:intron | 40.0% | |
| !!! | TTTTTGGTGTCCCTACCTAA+AGG | - | chr1_3:42263894-42263913 | None:intergenic | 40.0% |
| ACTTGCTTTCAGAGCATAGA+TGG | + | chr1_3:42264106-42264125 | Msa0118970:intron | 40.0% | |
| ! | CAAAAGCACGGCAATAATGA+AGG | - | chr1_3:42264441-42264460 | None:intergenic | 40.0% |
| ! | GGAGAAAAAGTCACCTGTTT+TGG | + | chr1_3:42264624-42264643 | Msa0118970:CDS | 40.0% |
| ! | GCTTGGTTGGTTAAGAACAT+TGG | + | chr1_3:42264666-42264685 | Msa0118970:CDS | 40.0% |
| !!! | TTATTTTTTGTTGGGGAGGG+AGG | + | chr1_3:42264769-42264788 | Msa0118970:three_prime_UTR | 40.0% |
| TCTTGTCCATCAAATTGCGA+TGG | - | chr1_3:42264909-42264928 | None:intergenic | 40.0% | |
| ! | TCGCAATTTGATGGACAAGA+TGG | + | chr1_3:42264909-42264928 | Msa0118970:three_prime_UTR | 40.0% |
| ! | AGCTGCATAGAATCCGATTT+TGG | + | chr1_3:42264961-42264980 | Msa0118970:three_prime_UTR | 40.0% |
| ! | GCTGCATAGAATCCGATTTT+GGG | + | chr1_3:42264962-42264981 | Msa0118970:three_prime_UTR | 40.0% |
| !! | ATAGAATCCGATTTTGGGAG+TGG | + | chr1_3:42264967-42264986 | Msa0118970:three_prime_UTR | 40.0% |
| !! | TAGAATCCGATTTTGGGAGT+GGG | + | chr1_3:42264968-42264987 | Msa0118970:three_prime_UTR | 40.0% |
| !! | GAAAAATAGCGGACTCTTGT+TGG | - | chr1_3:42265229-42265248 | None:intergenic | 40.0% |
| GCTCTTCCAAAGCTACATGA+AGG | - | chr1_3:42259048-42259067 | None:intergenic | 45.0% | |
| AGTGAAAGGGATGGTGAAGT+TGG | + | chr1_3:42259125-42259144 | Msa0118970:CDS | 45.0% | |
| GTTATGGAAAGTGGGAAGAG+AGG | + | chr1_3:42259156-42259175 | Msa0118970:CDS | 45.0% | |
| TATGGAAAGTGGGAAGAGAG+GGG | + | chr1_3:42259158-42259177 | Msa0118970:CDS | 45.0% | |
| ! | TTATTGGGTCTGGGATTGGT+GGG | + | chr1_3:42259208-42259227 | Msa0118970:CDS | 45.0% |
| GTTATACCTGGTGGAAGTTC+TGG | + | chr1_3:42259291-42259310 | Msa0118970:CDS | 45.0% | |
| TAAAACCCAGAACTTCCACC+AGG | - | chr1_3:42259300-42259319 | None:intergenic | 45.0% | |
| !! | CTGGGTTTTATCATAGGGAG+GGG | + | chr1_3:42259310-42259329 | Msa0118970:CDS | 45.0% |
| !! | CGCCACTGGTTTATGCTATT+AGG | - | chr1_3:42259670-42259689 | None:intergenic | 45.0% |
| CCAGGGCTTTACAATAATCC+TGG | - | chr1_3:42259696-42259715 | None:intergenic | 45.0% | |
| CCAGGATTATTGTAAAGCCC+TGG | + | chr1_3:42259693-42259712 | Msa0118970:intron | 45.0% | |
| ACAAGTGTTTATGCCATGGG+CGG | - | chr1_3:42259905-42259924 | None:intergenic | 45.0% | |
| ATTATGCTGTGTATCCCAGC+AGG | + | chr1_3:42260114-42260133 | Msa0118970:intron | 45.0% | |
| TTATGCTGTGTATCCCAGCA+GGG | + | chr1_3:42260115-42260134 | Msa0118970:intron | 45.0% | |
| TCATGACCATGAGTTGCCTT+AGG | + | chr1_3:42260394-42260413 | Msa0118970:intron | 45.0% | |
| !! | ACACAAGCATTGGAAGCAGT+TGG | + | chr1_3:42260599-42260618 | Msa0118970:CDS | 45.0% |
| AAATGAACGGTTGTCGGATC+AGG | - | chr1_3:42260644-42260663 | None:intergenic | 45.0% | |
| AGGCAAAACGCCTTATAAGG+GGG | - | chr1_3:42260817-42260836 | None:intergenic | 45.0% | |
| GAGGCAAAACGCCTTATAAG+GGG | - | chr1_3:42260818-42260837 | None:intergenic | 45.0% | |
| GGAGGCAAAACGCCTTATAA+GGG | - | chr1_3:42260819-42260838 | None:intergenic | 45.0% | |
| GTTGGAGCTAAAATCGCTTG+AGG | + | chr1_3:42260909-42260928 | Msa0118970:CDS | 45.0% | |
| TGCAAAGAAGATATGCCAGG+TGG | - | chr1_3:42261084-42261103 | None:intergenic | 45.0% | |
| TTCATTGATAGGGACTAGGG+AGG | + | chr1_3:42261106-42261125 | Msa0118970:intron | 45.0% | |
| !!! | AGGGAGGCGTTATCTTTTAG+CGG | + | chr1_3:42261122-42261141 | Msa0118970:intron | 45.0% |
| TGCTTCACTTCAGCAGCTAA+TGG | - | chr1_3:42261229-42261248 | None:intergenic | 45.0% | |
| CATTCTGAATTCCCGTGATC+CGG | - | chr1_3:42261384-42261403 | None:intergenic | 45.0% | |
| GTTGTCTTTCATAGATGCCG+AGG | + | chr1_3:42261781-42261800 | Msa0118970:CDS | 45.0% | |
| AAGCAAAAAGCTAGGTGAGC+AGG | - | chr1_3:42262061-42262080 | None:intergenic | 45.0% | |
| !! | AGATGATGCAGAAGCACCTT+TGG | + | chr1_3:42262398-42262417 | Msa0118970:intron | 45.0% |
| AGAGAGAGCAAGAGAGAAAG+AGG | - | chr1_3:42262515-42262534 | None:intergenic | 45.0% | |
| GTTCTGTGTGACAGACACTT+TGG | + | chr1_3:42262569-42262588 | Msa0118970:CDS | 45.0% | |
| TGTGTGACAGACACTTTGGT+GGG | + | chr1_3:42262573-42262592 | Msa0118970:CDS | 45.0% | |
| GTGGGATTAACTACCCTCTT+GGG | + | chr1_3:42262591-42262610 | Msa0118970:CDS | 45.0% | |
| TGGGATTAACTACCCTCTTG+GGG | + | chr1_3:42262592-42262611 | Msa0118970:CDS | 45.0% | |
| GGCAAAAGGTCTAGTTGATC+AGG | + | chr1_3:42262640-42262659 | Msa0118970:CDS | 45.0% | |
| ACGAGTATTATCACCGAGCA+GGG | + | chr1_3:42262692-42262711 | Msa0118970:CDS | 45.0% | |
| ! | TACTTTTGCAGGTAGGAGTG+AGG | + | chr1_3:42262798-42262817 | Msa0118970:intron | 45.0% |
| CTAACCAAATGTGTCCCATC+TGG | - | chr1_3:42262873-42262892 | None:intergenic | 45.0% | |
| AGGAGAATCACTGCCAAAAG+AGG | + | chr1_3:42263021-42263040 | Msa0118970:CDS | 45.0% | |
| TGGTGACAATCTGTATCTGG+TGG | - | chr1_3:42263124-42263143 | None:intergenic | 45.0% | |
| GAACAATTGGACCAGTTTGG+AGG | + | chr1_3:42263247-42263266 | Msa0118970:intron | 45.0% | |
| ACCAGTTTGGAGGAACCATA+TGG | + | chr1_3:42263257-42263276 | Msa0118970:CDS | 45.0% | |
| TCCATATGGTTCCTCCAAAC+TGG | - | chr1_3:42263261-42263280 | None:intergenic | 45.0% | |
| TGAAGGATATGACGACCTTC+AGG | - | chr1_3:42263329-42263348 | None:intergenic | 45.0% | |
| TTCTTCAATGGACGATTGGC+AGG | + | chr1_3:42263361-42263380 | Msa0118970:CDS | 45.0% | |
| ATATGAGGCAAAGAAGCAGG+TGG | + | chr1_3:42263571-42263590 | Msa0118970:CDS | 45.0% | |
| TGTCCCTACCTAAAGGTTCA+GGG | - | chr1_3:42263887-42263906 | None:intergenic | 45.0% | |
| AGCATTCCAAAGGGGTTGTT+AGG | + | chr1_3:42263967-42263986 | Msa0118970:CDS | 45.0% | |
| GTTATTGCGGTAGCTTTCTC+AGG | + | chr1_3:42264169-42264188 | Msa0118970:CDS | 45.0% | |
| CATCGAGTAGCTGCAGATAT+TGG | + | chr1_3:42264205-42264224 | Msa0118970:CDS | 45.0% | |
| GCAATAATGAAGGACGGTAC+AGG | - | chr1_3:42264431-42264450 | None:intergenic | 45.0% | |
| AGCACGGCAATAATGAAGGA+CGG | - | chr1_3:42264437-42264456 | None:intergenic | 45.0% | |
| ! | ATAGAACTAGGGCGTTCGAT+CGG | + | chr1_3:42264820-42264839 | Msa0118970:three_prime_UTR | 45.0% |
| GCTGTTCCATCGCAATTTGA+TGG | + | chr1_3:42264900-42264919 | Msa0118970:three_prime_UTR | 45.0% | |
| !! | AGAATCCGATTTTGGGAGTG+GGG | + | chr1_3:42264969-42264988 | Msa0118970:three_prime_UTR | 45.0% |
| TGGTGTGCTCCTTTGATCTT+TGG | + | chr1_3:42265133-42265152 | Msa0118970:intron | 45.0% | |
| !! | AATAAAAATAAAAATGTAAA+CGG | + | chr1_3:42258787-42258806 | Msa0118970:five_prime_UTR | 5.0% |
| !!! | ACTTTTTATTATTAAAAAAT+AGG | + | chr1_3:42264598-42264617 | Msa0118970:intron | 5.0% |
| !!! | CTTTTTATTATTAAAAAATA+GGG | + | chr1_3:42264599-42264618 | Msa0118970:intron | 5.0% |
| ! | GGTGTGATGGTAGATGATGG+GGG | - | chr1_3:42259001-42259020 | None:intergenic | 50.0% |
| GGGTGTGATGGTAGATGATG+GGG | - | chr1_3:42259002-42259021 | None:intergenic | 50.0% | |
| GGGGTGTGATGGTAGATGAT+GGG | - | chr1_3:42259003-42259022 | None:intergenic | 50.0% | |
| TGGGGTGTGATGGTAGATGA+TGG | - | chr1_3:42259004-42259023 | None:intergenic | 50.0% | |
| TCATCTGGGTCACGCTCAAA+TGG | + | chr1_3:42259075-42259094 | Msa0118970:CDS | 50.0% | |
| GAAAGGGATGGTGAAGTTGG+AGG | + | chr1_3:42259128-42259147 | Msa0118970:CDS | 50.0% | |
| ! | GTTATTGGGTCTGGGATTGG+TGG | + | chr1_3:42259207-42259226 | Msa0118970:CDS | 50.0% |
| ! | AAAAATTTTGGGCCGGAGCC+CGG | + | chr1_3:42259849-42259868 | Msa0118970:intron | 50.0% |
| TTATGCCATGGGCGGTTCTA+TGG | - | chr1_3:42259897-42259916 | None:intergenic | 50.0% | |
| GGAAGCAGTTGGTTGTCAGA+TGG | + | chr1_3:42260610-42260629 | Msa0118970:CDS | 50.0% | |
| AGCAGTTGGTTGTCAGATGG+AGG | + | chr1_3:42260613-42260632 | Msa0118970:CDS | 50.0% | |
| ACTCGAACAGAGAGGTGGTT+TGG | - | chr1_3:42260674-42260693 | None:intergenic | 50.0% | |
| ! | AGGATGCCGTCCTTTTCATG+GGG | - | chr1_3:42260743-42260762 | None:intergenic | 50.0% |
| ! | GAGGATGCCGTCCTTTTCAT+GGG | - | chr1_3:42260744-42260763 | None:intergenic | 50.0% |
| ! | TGAGGATGCCGTCCTTTTCA+TGG | - | chr1_3:42260745-42260764 | None:intergenic | 50.0% |
| CGGAGGCAAAACGCCTTATA+AGG | - | chr1_3:42260820-42260839 | None:intergenic | 50.0% | |
| ! | GAGGAGCCACTCTACCTTTT+TGG | + | chr1_3:42260928-42260947 | Msa0118970:CDS | 50.0% |
| ! | GGCGTTATCTTTTAGCGGTG+AGG | + | chr1_3:42261127-42261146 | Msa0118970:intron | 50.0% |
| GGACCAAATTGACCGGATCA+CGG | + | chr1_3:42261369-42261388 | Msa0118970:intron | 50.0% | |
| GACCAAATTGACCGGATCAC+GGG | + | chr1_3:42261370-42261389 | Msa0118970:intron | 50.0% | |
| TTCCCGTGATCCGGTCAATT+TGG | - | chr1_3:42261375-42261394 | None:intergenic | 50.0% | |
| ! | GCTATGGCTCCAGCATTTTG+AGG | - | chr1_3:42261734-42261753 | None:intergenic | 50.0% |
| AAAATGCTGGAGCCATAGCC+AGG | + | chr1_3:42261735-42261754 | Msa0118970:CDS | 50.0% | |
| !! | TGGAGTCTGCAAAGCGTTGA+CGG | - | chr1_3:42262016-42262035 | None:intergenic | 50.0% |
| AGTGTCTGTCACACAGAACC+TGG | - | chr1_3:42262568-42262587 | None:intergenic | 50.0% | |
| CTGTGTGACAGACACTTTGG+TGG | + | chr1_3:42262572-42262591 | Msa0118970:CDS | 50.0% | |
| GGTGGGATTAACTACCCTCT+TGG | + | chr1_3:42262590-42262609 | Msa0118970:CDS | 50.0% | |
| GGGATTAACTACCCTCTTGG+GGG | + | chr1_3:42262593-42262612 | Msa0118970:CDS | 50.0% | |
| CACGAGTATTATCACCGAGC+AGG | + | chr1_3:42262691-42262710 | Msa0118970:CDS | 50.0% | |
| GTAGGAGTGAGGCTTTCAGA+TGG | + | chr1_3:42262809-42262828 | Msa0118970:CDS | 50.0% | |
| GCTACCAGATGGGACACATT+TGG | + | chr1_3:42262866-42262885 | Msa0118970:CDS | 50.0% | |
| ACACATGGGGGTTAAAGCAG+AGG | + | chr1_3:42263093-42263112 | Msa0118970:CDS | 50.0% | |
| TCAATGGACGATTGGCAGGT+AGG | + | chr1_3:42263365-42263384 | Msa0118970:intron | 50.0% | |
| GTGTCCCTACCTAAAGGTTC+AGG | - | chr1_3:42263888-42263907 | None:intergenic | 50.0% | |
| TCCATAAGTACCCTCGTCAC+GGG | - | chr1_3:42263935-42263954 | None:intergenic | 50.0% | |
| GTCCATAAGTACCCTCGTCA+CGG | - | chr1_3:42263936-42263955 | None:intergenic | 50.0% | |
| ! | TTTGGAATGCTGCGTGGCAT+TGG | - | chr1_3:42263958-42263977 | None:intergenic | 50.0% |
| AATGCCACGCAGCATTCCAA+AGG | + | chr1_3:42263957-42263976 | Msa0118970:CDS | 50.0% | |
| ATGCCACGCAGCATTCCAAA+GGG | + | chr1_3:42263958-42263977 | Msa0118970:CDS | 50.0% | |
| GGCATTCCTAACAACCCCTT+TGG | - | chr1_3:42263976-42263995 | None:intergenic | 50.0% | |
| CCGCAATAACACCTTGTCCA+GGG | - | chr1_3:42264159-42264178 | None:intergenic | 50.0% | |
| !! | CCCTGGACAAGGTGTTATTG+CGG | + | chr1_3:42264156-42264175 | Msa0118970:CDS | 50.0% |
| ACCGCAATAACACCTTGTCC+AGG | - | chr1_3:42264160-42264179 | None:intergenic | 50.0% | |
| !! | TTTTGGACGGCATGCTGCTT+GGG | + | chr1_3:42264641-42264660 | Msa0118970:CDS | 50.0% |
| GCAGCTATAGAATCCCGCAT+TGG | - | chr1_3:42264947-42264966 | None:intergenic | 50.0% | |
| !! | GAATCCGATTTTGGGAGTGG+GGG | + | chr1_3:42264970-42264989 | Msa0118970:three_prime_UTR | 50.0% |
| !! | AATCCGATTTTGGGAGTGGG+GGG | + | chr1_3:42264971-42264990 | Msa0118970:three_prime_UTR | 50.0% |
| ! | ACTTTGGAGGTGGGGTGTGA+TGG | - | chr1_3:42259014-42259033 | None:intergenic | 55.0% |
| TCTGGGTCACGCTCAAATGG+TGG | + | chr1_3:42259078-42259097 | Msa0118970:CDS | 55.0% | |
| !! | GGATTGGTGGGTTGGTTGCT+GGG | + | chr1_3:42259220-42259239 | Msa0118970:CDS | 55.0% |
| GTTGGTTGCTGGGACTCAGT+TGG | + | chr1_3:42259230-42259249 | Msa0118970:CDS | 55.0% | |
| GGGACTCAGTTGGCTGTGAA+AGG | + | chr1_3:42259240-42259259 | Msa0118970:CDS | 55.0% | |
| AATAATCCTGGCTCCGCCAC+TGG | - | chr1_3:42259684-42259703 | None:intergenic | 55.0% | |
| ! | AAAATTTTGGGCCGGAGCCC+GGG | + | chr1_3:42259850-42259869 | Msa0118970:intron | 55.0% |
| TGTGCACTCGAACAGAGAGG+TGG | - | chr1_3:42260679-42260698 | None:intergenic | 55.0% | |
| CTCTGTGCACTCGAACAGAG+AGG | - | chr1_3:42260682-42260701 | None:intergenic | 55.0% | |
| GTGACTGCAGCCCCCTTATA+AGG | + | chr1_3:42260804-42260823 | Msa0118970:intron | 55.0% | |
| TGACGACCCTCTACACACAC+AGG | + | chr1_3:42261615-42261634 | Msa0118970:intron | 55.0% | |
| GGTGTGCCTGTGTGTGTAGA+GGG | - | chr1_3:42261624-42261643 | None:intergenic | 55.0% | |
| AGGTGTGCCTGTGTGTGTAG+AGG | - | chr1_3:42261625-42261644 | None:intergenic | 55.0% | |
| ! | AACTACCCTCTTGGGGGTGT+TGG | + | chr1_3:42262599-42262618 | Msa0118970:CDS | 55.0% |
| ACTTACGGCTTTGCCCTGCT+CGG | - | chr1_3:42262708-42262727 | None:intergenic | 55.0% | |
| AGGTAGGCAATACCGAGCAG+TGG | + | chr1_3:42263381-42263400 | Msa0118970:intron | 55.0% | |
| TCGATGGATGCTCGAAGACC+TGG | - | chr1_3:42263638-42263657 | None:intergenic | 55.0% | |
| ACGATACTTAGCCCGTGACG+AGG | + | chr1_3:42263921-42263940 | Msa0118970:CDS | 55.0% | |
| CGATACTTAGCCCGTGACGA+GGG | + | chr1_3:42263922-42263941 | Msa0118970:CDS | 55.0% | |
| TGCCACGCAGCATTCCAAAG+GGG | + | chr1_3:42263959-42263978 | Msa0118970:CDS | 55.0% | |
| !! | AACCCCTTTGGAATGCTGCG+TGG | - | chr1_3:42263964-42263983 | None:intergenic | 55.0% |
| GTTGGAGACAGTTGCTTCCC+TGG | + | chr1_3:42264139-42264158 | Msa0118970:CDS | 55.0% | |
| GACAGTTGCTTCCCTGGACA+AGG | + | chr1_3:42264145-42264164 | Msa0118970:CDS | 55.0% | |
| AGCAGCATGCCGTCCAAAAC+AGG | - | chr1_3:42264640-42264659 | None:intergenic | 55.0% | |
| !! | GTTTTGGACGGCATGCTGCT+TGG | + | chr1_3:42264640-42264659 | Msa0118970:CDS | 55.0% |
| ! | TGCTGCTTGGGTTGCTTGGT+TGG | + | chr1_3:42264653-42264672 | Msa0118970:CDS | 55.0% |
| ! | TGGGTCTGGGATTGGTGGGT+TGG | + | chr1_3:42259212-42259231 | Msa0118970:CDS | 60.0% |
| !! | GGGATTGGTGGGTTGGTTGC+TGG | + | chr1_3:42259219-42259238 | Msa0118970:CDS | 60.0% |
| ! | CATAAACCAGTGGCGGAGCC+AGG | + | chr1_3:42259675-42259694 | Msa0118970:intron | 60.0% |
| !! | TACCCTCTTGGGGGTGTTGG+TGG | + | chr1_3:42262602-42262621 | Msa0118970:CDS | 60.0% |
| !! | ACCCTCTTGGGGGTGTTGGT+GGG | + | chr1_3:42262603-42262622 | Msa0118970:CDS | 60.0% |
| TCCCACCAACACCCCCAAGA+GGG | - | chr1_3:42262607-42262626 | None:intergenic | 60.0% | |
| ATCCCACCAACACCCCCAAG+AGG | - | chr1_3:42262608-42262627 | None:intergenic | 60.0% | |
| !! | GCCCGTGACGAGGGTACTTA+TGG | + | chr1_3:42263931-42263950 | Msa0118970:CDS | 60.0% |
| ! | GGCATGCTGCTTGGGTTGCT+TGG | + | chr1_3:42264649-42264668 | Msa0118970:CDS | 60.0% |
| TTGTTGGGGAGGGAGGAGAG+AGG | + | chr1_3:42264776-42264795 | Msa0118970:three_prime_UTR | 60.0% | |
| GGCTTAGCTGCGTGCCAATG+CGG | + | chr1_3:42264930-42264949 | Msa0118970:three_prime_UTR | 60.0% | |
| GCTTAGCTGCGTGCCAATGC+GGG | + | chr1_3:42264931-42264950 | Msa0118970:three_prime_UTR | 60.0% | |
| CAGCCCCCCACTCCCAAAAT+CGG | - | chr1_3:42264977-42264996 | None:intergenic | 60.0% | |
| CCATGGGCGGTTCTATGGCC+CGG | - | chr1_3:42259892-42259911 | None:intergenic | 65.0% | |
| TTCTATGGCCCGGCGACCCC+GGG | - | chr1_3:42259882-42259901 | None:intergenic | 70.0% | |
| GTTCTATGGCCCGGCGACCC+CGG | - | chr1_3:42259883-42259902 | None:intergenic | 70.0% | |
| CCGGGCCATAGAACCGCCCA+TGG | + | chr1_3:42259889-42259908 | Msa0118970:intron | 70.0% | |
| ! | CCGGGCACTCGCCCGGGCTC+CGG | - | chr1_3:42259864-42259883 | None:intergenic | 85.0% |
| ! | CCGGAGCCCGGGCGAGTGCC+CGG | + | chr1_3:42259861-42259880 | Msa0118970:intron | 85.0% |
| ! | CGGAGCCCGGGCGAGTGCCC+GGG | + | chr1_3:42259862-42259881 | Msa0118970:intron | 85.0% |
| ! | GGAGCCCGGGCGAGTGCCCG+GGG | + | chr1_3:42259863-42259882 | Msa0118970:intron | 85.0% |
| ! | GCGACCCCGGGCACTCGCCC+GGG | - | chr1_3:42259870-42259889 | None:intergenic | 85.0% |
| ! | GGCGACCCCGGGCACTCGCC+CGG | - | chr1_3:42259871-42259890 | None:intergenic | 85.0% |
| ! | GGGCGAGTGCCCGGGGTCGC+CGG | + | chr1_3:42259870-42259889 | Msa0118970:intron | 85.0% |
| ! | GGCGAGTGCCCGGGGTCGCC+GGG | + | chr1_3:42259871-42259890 | Msa0118970:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 42258640 | 42265356 | 42258640 | ID=Msa0118970;Name=Msa0118970 |
| chr1_3 | mRNA | 42258640 | 42265356 | 42258640 | ID=Msa0118970-mRNA-1;Parent=Msa0118970;Name=Msa0118970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=321|1|1|1|0.92|0.85|14|435|596 |
| chr1_3 | exon | 42258640 | 42259380 | 42258640 | ID=Msa0118970-mRNA-1:exon:12756;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42260581 | 42260787 | 42260581 | ID=Msa0118970-mRNA-1:exon:12757;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42260889 | 42260988 | 42260889 | ID=Msa0118970-mRNA-1:exon:12758;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42261720 | 42261802 | 42261720 | ID=Msa0118970-mRNA-1:exon:12759;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42261997 | 42262053 | 42261997 | ID=Msa0118970-mRNA-1:exon:12760;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42262569 | 42262721 | 42262569 | ID=Msa0118970-mRNA-1:exon:12761;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42262809 | 42262887 | 42262809 | ID=Msa0118970-mRNA-1:exon:12762;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42263008 | 42263156 | 42263008 | ID=Msa0118970-mRNA-1:exon:12763;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42263248 | 42263382 | 42263248 | ID=Msa0118970-mRNA-1:exon:12764;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42263554 | 42263667 | 42263554 | ID=Msa0118970-mRNA-1:exon:12765;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42263898 | 42264008 | 42263898 | ID=Msa0118970-mRNA-1:exon:12766;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42264118 | 42264226 | 42264118 | ID=Msa0118970-mRNA-1:exon:12767;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42264620 | 42265116 | 42264620 | ID=Msa0118970-mRNA-1:exon:12768;Parent=Msa0118970-mRNA-1 |
| chr1_3 | exon | 42265345 | 42265356 | 42265345 | ID=Msa0118970-mRNA-1:exon:12769;Parent=Msa0118970-mRNA-1 |
| chr1_3 | five_prime_UTR | 42258640 | 42258960 | 42258640 | ID=Msa0118970-mRNA-1:five_prime_utr;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42258961 | 42259380 | 42258961 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42260581 | 42260787 | 42260581 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42260889 | 42260988 | 42260889 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42261720 | 42261802 | 42261720 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42261997 | 42262053 | 42261997 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42262569 | 42262721 | 42262569 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42262809 | 42262887 | 42262809 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42263008 | 42263156 | 42263008 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42263248 | 42263382 | 42263248 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42263554 | 42263667 | 42263554 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42263898 | 42264008 | 42263898 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42264118 | 42264226 | 42264118 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | CDS | 42264620 | 42264693 | 42264620 | ID=Msa0118970-mRNA-1:cds;Parent=Msa0118970-mRNA-1 |
| chr1_3 | three_prime_UTR | 42264694 | 42265116 | 42264694 | ID=Msa0118970-mRNA-1:three_prime_utr;Parent=Msa0118970-mRNA-1 |
| chr1_3 | three_prime_UTR | 42265345 | 42265356 | 42265345 | ID=Msa0118970-mRNA-1:three_prime_utr;Parent=Msa0118970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
