AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156060 MtrunA17_Chr7g0249401 98.824 510 5 1 1 510 1 509 0.0 1050
Msa1156060 MtrunA17_Chr7g0249411 98.864 88 1 0 510 597 1018 1105 1.09e-48 182
Msa1156060 MtrunA17_Chr4g0066901 28.363 342 218 8 21 352 63 387 1.97e-27 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156060 AT3G47390.2 74.150 588 146 4 12 594 9 595 0.0 905
Msa1156060 AT3G47390.1 70.519 597 155 6 12 594 9 598 0.0 852
Msa1156060 AT4G20960.1 27.922 308 197 8 32 333 74 362 3.92e-22 99.8

Find 161 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCCCCATGATCTCTTT+TGG 0.115959 7_4:+44266509 Msa1156060:CDS
AACACGGTTGCTTATAATTT+AGG 0.119523 7_4:-44266892 None:intergenic
CCTATTCTAGCAGCTTCTTC+TGG 0.242745 7_4:-44266015 None:intergenic
CTTTAGACGCAAGCAGCTTC+TGG 0.243341 7_4:-44264779 None:intergenic
CCATCTCCTGTGGGTGATCT+TGG 0.250546 7_4:+44265429 Msa1156060:CDS
ATTCAAATGCCTGATGAAAA+TGG 0.287858 7_4:+44265799 Msa1156060:CDS
TGCTGTGTCTGCCCTACTTC+AGG 0.295221 7_4:+44263275 Msa1156060:CDS
ACACGGTTGCTTATAATTTA+GGG 0.308879 7_4:-44266891 None:intergenic
TTTGTTGCTCCTAAAATTAT+TGG 0.320816 7_4:+44265393 Msa1156060:CDS
TACCTCCCCTGCCGAAGTTC+AGG 0.321275 7_4:+44263170 Msa1156060:CDS
TCCCATAGGTTTGCCTCCTC+TGG 0.337323 7_4:-44264702 None:intergenic
GGATTGCAAGTTGATCTTCT+TGG 0.339246 7_4:+44263470 Msa1156060:CDS
TACTACTGCAAAGGATTGTT+TGG 0.342245 7_4:+44265969 Msa1156060:CDS
GGGGTCAAAAGGGTTGTTAT+TGG 0.344452 7_4:+44263389 Msa1156060:CDS
ATTAAATCCGCGGGATGTTA+TGG 0.355275 7_4:+44264827 Msa1156060:CDS
CCATGTCTGGCTGTCAATCT+TGG 0.358207 7_4:-44264630 None:intergenic
TGCTTTGCATTTGCAGATGA+TGG 0.358381 7_4:-44262983 None:intergenic
TAAACTAGGGTGGGGTCAAA+AGG 0.367576 7_4:+44263378 Msa1156060:intron
GGAATTGTCGGTGCCGTATC+TGG 0.388005 7_4:-44265658 None:intergenic
CATCTCCTGTGGGTGATCTT+GGG 0.394148 7_4:+44265430 Msa1156060:CDS
ACCTGCAGATAAGGCCTGAT+TGG 0.404509 7_4:+44266377 Msa1156060:intron
ATCTTCATGTTGTCCCAATC+AGG 0.408250 7_4:-44266391 None:intergenic
GCTGCGTCTGCTATTTCGTC+TGG 0.408450 7_4:+44264906 Msa1156060:CDS
GCTGCTTTCAACTGCCGGTT+CGG 0.409041 7_4:+44266474 Msa1156060:CDS
ACCCCTCTGTGTTACAACTA+TGG 0.410725 7_4:-44264742 None:intergenic
TTCTAGGGATCCTTGTTAAG+AGG 0.412914 7_4:+44266867 Msa1156060:three_prime_UTR
CCAGAAGAAGCTGCTAGAAT+AGG 0.417213 7_4:+44266015 Msa1156060:CDS
GGCTCCACGGCAACGCTCGC+CGG 0.419042 7_4:-44263205 None:intergenic
GGTCCAGACATGCTTGTTAG+TGG 0.427768 7_4:+44265619 Msa1156060:CDS
GAAAGCACAGTAAATTGTTA+AGG 0.433755 7_4:+44266731 Msa1156060:three_prime_UTR
CATATGCCCACCTCCATGTC+TGG 0.434550 7_4:-44264643 None:intergenic
GCGATGACGCAGCCGAAGTT+GGG 0.438649 7_4:-44263099 None:intergenic
AGCATACTTGAGAACAGAAA+AGG 0.439969 7_4:-44264260 None:intergenic
AATCCACTAACAAGCATGTC+TGG 0.442951 7_4:-44265622 None:intergenic
ACAAAGGCAGCGTCCTGATC+TGG 0.443695 7_4:+44266047 Msa1156060:CDS
GGCGATGACGCAGCCGAAGT+TGG 0.446690 7_4:-44263100 None:intergenic
CTCCGCCCCAAAAGAGATCA+TGG 0.450575 7_4:-44266516 None:intergenic
TCCGGCGATGTCGCCGGTGA+AGG 0.456323 7_4:+44263129 Msa1156060:CDS
AGTCACCAGGTTCCATGTTC+AGG 0.469375 7_4:-44263236 None:intergenic
CTGCTAGCACTGGCCATGCA+TGG 0.471816 7_4:+44264427 Msa1156060:CDS
TCCTCTGGTGATGGAATTGT+CGG 0.475073 7_4:-44265670 None:intergenic
CAGAAGCTGCTTGCGTCTAA+AGG 0.475517 7_4:+44264780 Msa1156060:CDS
TTTACTGTGCTTTCACTATG+TGG 0.484139 7_4:-44266722 None:intergenic
AATGAGAAAGTGTTAGCGAT+TGG 0.487967 7_4:-44262955 None:intergenic
CACTAGTAGTAAGATTATAG+AGG 0.488783 7_4:+44263502 Msa1156060:CDS
TCTTCAACCGTTACCAGATA+CGG 0.490264 7_4:+44265645 Msa1156060:CDS
AACAAACGAGAAATGTCTAC+TGG 0.490696 7_4:-44266828 None:intergenic
AGCCTCAACTAGAACCGAAC+CGG 0.490853 7_4:-44266488 None:intergenic
CGCGTAGAGGTAACCTTCAC+CGG 0.491469 7_4:-44263142 None:intergenic
TCCTGTGGGTGATCTTGGGA+TGG 0.493024 7_4:+44265434 Msa1156060:CDS
TTCCTCTAAAATGTTGCAAA+GGG 0.493936 7_4:-44263421 None:intergenic
GTTGCTCCTAAAATTATTGG+TGG 0.494160 7_4:+44265396 Msa1156060:CDS
ACCGGCGACATCGCCGGAGG+GGG 0.494201 7_4:-44263124 None:intergenic
CACAACCACGCGCTCGACGC+CGG 0.496670 7_4:+44263018 Msa1156060:CDS
TCTATGCTGCTTTCAACTGC+CGG 0.499219 7_4:+44266469 Msa1156060:CDS
AATCGATGTTTGCTATCAGC+AGG 0.499777 7_4:+44265482 Msa1156060:CDS
CCTGCAGATAAGGCCTGATT+GGG 0.500182 7_4:+44266378 Msa1156060:intron
TTCCAGAGGAGGCAAACCTA+TGG 0.503763 7_4:+44264700 Msa1156060:CDS
TGCCGGTTCGGTTCTAGTTG+AGG 0.505390 7_4:+44266486 Msa1156060:CDS
ACTTCTCCTCATCCCAACTT+CGG 0.506879 7_4:+44263087 Msa1156060:CDS
GGCGGATTTGTCAGCGATGA+GGG 0.514160 7_4:-44263058 None:intergenic
AATATGATGCTGGATTCATA+TGG 0.519826 7_4:-44265721 None:intergenic
CTGGGAATGTGGAGGAACAT+TGG 0.521107 7_4:+44264884 Msa1156060:CDS
AGTATAGTATTTATAAAGAG+AGG 0.521194 7_4:+44266645 Msa1156060:exon
CAGCGATGAGGGCGGCGCGT+CGG 0.526230 7_4:-44263047 None:intergenic
TCAAAGGAGCGTTAACAAGA+AGG 0.530304 7_4:-44264213 None:intergenic
ATAAAAGTTTCCTCTGGTGA+TGG 0.531804 7_4:-44265679 None:intergenic
ACCTTCACCGGCGACATCGC+CGG 0.537703 7_4:-44263130 None:intergenic
GGGATGAGGAGAAGTGAAAC+CGG 0.538335 7_4:-44263079 None:intergenic
TCCGCCGGCGAGCGTTGCCG+TGG 0.540138 7_4:+44263201 Msa1156060:CDS
GCATACTTGAGAACAGAAAA+GGG 0.542072 7_4:-44264259 None:intergenic
GGAAGTAACGGCCTGAACTT+CGG 0.544526 7_4:-44263181 None:intergenic
GTGTTGGGTCATACCAGATC+AGG 0.544618 7_4:-44266060 None:intergenic
TCCACGGCAACGCTCGCCGG+CGG 0.544849 7_4:-44263202 None:intergenic
TTTCCTCTAAAATGTTGCAA+AGG 0.545620 7_4:-44263422 None:intergenic
GGAGAAGGCTTGAATTATCT+CGG 0.546128 7_4:+44266547 Msa1156060:CDS
GGCGCACAAGTTCGTTGGAG+TGG 0.548370 7_4:+44265942 Msa1156060:intron
GCCTAGGCGCACAAGTTCGT+TGG 0.548390 7_4:+44265937 Msa1156060:intron
GTTCAGGCCGTTACTTCCGC+CGG 0.550199 7_4:+44263186 Msa1156060:CDS
AAACTAGGGTGGGGTCAAAA+GGG 0.550454 7_4:+44263379 Msa1156060:intron
AGAAGCGATGCAATCATTGT+GGG 0.552806 7_4:+44264498 Msa1156060:CDS
GTTTGACATATTAAATCCGC+GGG 0.554131 7_4:+44264818 Msa1156060:CDS
TACCATAGTTGTAACACAGA+GGG 0.554429 7_4:+44264740 Msa1156060:CDS
TGCAGCTTATCCACCATGCA+TGG 0.556200 7_4:-44264440 None:intergenic
AACAAGGCAAAACCTGAAGT+AGG 0.557755 7_4:-44263287 None:intergenic
GATTCATATGGAGAGACAGT+AGG 0.557834 7_4:-44265709 None:intergenic
CACCGGCGACATCGCCGGAG+GGG 0.557977 7_4:-44263125 None:intergenic
TCCAGAGGAGGCAAACCTAT+GGG 0.558460 7_4:+44264701 Msa1156060:CDS
CCAAGATCACCCACAGGAGA+TGG 0.558536 7_4:-44265429 None:intergenic
AACGGCCTGAACTTCGGCAG+GGG 0.559238 7_4:-44263175 None:intergenic
TCAGGCATTTGAATGGGATG+AGG 0.559838 7_4:-44265790 None:intergenic
AATTTAGGGTCCTCTTAACA+AGG 0.564094 7_4:-44266877 None:intergenic
GCAAGTTGATCTTCTTGGAG+AGG 0.566968 7_4:+44263475 Msa1156060:CDS
CCAAGATTGACAGCCAGACA+TGG 0.570075 7_4:+44264630 Msa1156060:CDS
ATTGAGATCAGAGTTTCTTG+AGG 0.571669 7_4:+44266585 Msa1156060:CDS
ACGCAGCCGAAGTTGGGATG+AGG 0.573519 7_4:-44263093 None:intergenic
ATTCATATGGAGAGACAGTA+GGG 0.574668 7_4:-44265708 None:intergenic
TCAGCAATAAAAGTTTCCTC+TGG 0.580534 7_4:-44265685 None:intergenic
TCCGCCCCAAAAGAGATCAT+GGG 0.581278 7_4:-44266515 None:intergenic
AAATACTATACTGCTAAACT+AGG 0.581783 7_4:-44266634 None:intergenic
CTCATCGCTGACAAATCCGC+CGG 0.584944 7_4:+44263060 Msa1156060:CDS
GTCCCTCGATCTTCCAGAGG+AGG 0.585588 7_4:+44264689 Msa1156060:CDS
TGCCTCCTCTGGAAGATCGA+GGG 0.585777 7_4:-44264691 None:intergenic
GTCGGTGCCGTATCTGGTAA+CGG 0.587126 7_4:-44265652 None:intergenic
TTGACAGCCAGACATGGAGG+TGG 0.588804 7_4:+44264636 Msa1156060:CDS
GAAGGTTACCTCTACGCGCA+AGG 0.589031 7_4:+44263147 Msa1156060:CDS
TTGTAACACAGAGGGGTGCA+AGG 0.590044 7_4:+44264748 Msa1156060:CDS
GTGCGTGCACTTAGAAGTCA+AGG 0.591377 7_4:+44263449 Msa1156060:CDS
TAGAAGCGATGCAATCATTG+TGG 0.591803 7_4:+44264497 Msa1156060:CDS
TTGTCACCGTCACAGTCACC+AGG 0.594772 7_4:-44263249 None:intergenic
ACAAGGCAAAACCTGAAGTA+GGG 0.595181 7_4:-44263286 None:intergenic
AGCCACTGCTTACCTGAACA+TGG 0.597294 7_4:+44263224 Msa1156060:CDS
GGCGGAGGTCGAGAAGGAGA+AGG 0.597455 7_4:+44266532 Msa1156060:CDS
TGTTGTACAACAAGTAATGT+TGG 0.597584 7_4:-44266695 None:intergenic
GCTTACCTGAACATGGAACC+TGG 0.598291 7_4:+44263231 Msa1156060:CDS
TCACCGGCGACATCGCCGGA+GGG 0.599252 7_4:-44263126 None:intergenic
GCAGCATAGAACTCAAATGC+GGG 0.604823 7_4:-44266456 None:intergenic
GAAGAAGCTCTACAAATCAA+AGG 0.605213 7_4:-44264229 None:intergenic
AAAATGGCGAAAACGTGACT+TGG 0.606051 7_4:+44265815 Msa1156060:CDS
TGGGAGGAAATACAGTTCGA+AGG 0.607145 7_4:+44264517 Msa1156060:CDS
TCAGGTAAGCAGTGGCTCCA+CGG 0.608613 7_4:-44263218 None:intergenic
AAACCTCAGACATGTCCCAT+AGG 0.614924 7_4:-44264716 None:intergenic
CGGCGGATTTGTCAGCGATG+AGG 0.618167 7_4:-44263059 None:intergenic
TTCACCGGCGACATCGCCGG+AGG 0.620959 7_4:-44263127 None:intergenic
TTCCATGTTCAGGTAAGCAG+TGG 0.622564 7_4:-44263226 None:intergenic
TATAAAACATGGGATCCTCA+TGG 0.624108 7_4:+44265748 Msa1156060:CDS
AGTGGATGATACTACTGCAA+AGG 0.626634 7_4:+44265960 Msa1156060:CDS
AAACGTGACTTGGTTGAGTG+TGG 0.626984 7_4:+44265825 Msa1156060:CDS
GGGAGGAAATACAGTTCGAA+GGG 0.627348 7_4:+44264518 Msa1156060:CDS
AAGAAGCTGCTAGAATAGGA+AGG 0.627823 7_4:+44266019 Msa1156060:CDS
GAAGATCGATGTCATGTACT+CGG 0.628310 7_4:+44266408 Msa1156060:CDS
AAACCTATGGGACATGTCTG+AGG 0.629695 7_4:+44264713 Msa1156060:CDS
TTGCCTCCTCTGGAAGATCG+AGG 0.633064 7_4:-44264692 None:intergenic
GAGTGTGGAGCATTACTACC+AGG 0.633117 7_4:+44265840 Msa1156060:CDS
GAATAGGAAGGTCAATACAA+AGG 0.635333 7_4:+44266031 Msa1156060:CDS
TGACAGCCAGACATGGAGGT+GGG 0.637384 7_4:+44264637 Msa1156060:CDS
TGAGACATTACAATGCGTAT+CGG 0.639633 7_4:-44264666 None:intergenic
CTAGCACTGGCCATGCATGG+TGG 0.640844 7_4:+44264430 Msa1156060:CDS
AGTTTGACATATTAAATCCG+CGG 0.643413 7_4:+44264817 Msa1156060:CDS
TCAGTCCCTCGATCTTCCAG+AGG 0.644283 7_4:+44264686 Msa1156060:CDS
TTCGTCTGGAGTAATTCACA+AGG 0.644402 7_4:+44264920 Msa1156060:CDS
AAAGAATGCACCATCTCCTG+TGG 0.647393 7_4:+44265419 Msa1156060:CDS
CCGCCCCAAAAGAGATCATG+GGG 0.652932 7_4:-44266514 None:intergenic
GGCGGCGCGTCGGATATACC+CGG 0.654145 7_4:-44263037 None:intergenic
AAATACTCCATAACATCCCG+CGG 0.656854 7_4:-44264834 None:intergenic
GGATTTGTCAGCGATGAGGG+CGG 0.660555 7_4:-44263055 None:intergenic
AGCGATGCAATCATTGTGGG+AGG 0.663446 7_4:+44264501 Msa1156060:CDS
GGGAGGTACCTTGCGCGTAG+AGG 0.664030 7_4:-44263155 None:intergenic
ACCATCCCAAGATCACCCAC+AGG 0.664172 7_4:-44265435 None:intergenic
TAACGGCCTGAACTTCGGCA+GGG 0.670902 7_4:-44263176 None:intergenic
AAGTATGCTATGACTCTCGA+TGG 0.677384 7_4:+44264274 Msa1156060:CDS
ACCGACAATTCCATCACCAG+AGG 0.685659 7_4:+44265669 Msa1156060:CDS
AAATTTGACAATGCACCATG+AGG 0.688050 7_4:-44265763 None:intergenic
ATGAGGAGAAGTGAAACCGG+CGG 0.688211 7_4:-44263076 None:intergenic
AGCAGCATAGAACTCAAATG+CGG 0.691668 7_4:-44266457 None:intergenic
ATGGAACCTGGTGACTGTGA+CGG 0.698388 7_4:+44263243 Msa1156060:CDS
AAGAATGCACCATCTCCTGT+GGG 0.705424 7_4:+44265420 Msa1156060:CDS
CTATTGTTGATTAAGCGATG+TGG 0.708754 7_4:+44262923 Msa1156060:exon
AGATTGACAGCCAGACATGG+AGG 0.708948 7_4:+44264633 Msa1156060:CDS
ACCATAGTTGTAACACAGAG+GGG 0.730677 7_4:+44264741 Msa1156060:CDS
CTACCATAGTTGTAACACAG+AGG 0.759254 7_4:+44264739 Msa1156060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAGAAATGTTAT+TGG + chr7_4:44265013-44265032 Msa1156060:intron 10.0%
!!! ATTAGACATATATTTTTAAT+TGG - chr7_4:44265559-44265578 None:intergenic 10.0%
!!! AAAATTTTGAAAGTATTTAT+TGG + chr7_4:44266758-44266777 Msa1156060:three_prime_UTR 10.0%
!!! TATTAATGTGTTTTACTTTT+GGG + chr7_4:44263542-44263561 Msa1156060:intron 15.0%
!!! ATAGAAAATAATGATAATGA+TGG - chr7_4:44264554-44264573 None:intergenic 15.0%
!!! ATTTTACCTTAAAATATGTT+GGG + chr7_4:44265335-44265354 Msa1156060:intron 15.0%
!!! TCATATTTTTCTATAAAACA+TGG + chr7_4:44265737-44265756 Msa1156060:CDS 15.0%
!!! CATATTTTTCTATAAAACAT+GGG + chr7_4:44265738-44265757 Msa1156060:CDS 15.0%
!!! CTATTAATGTGTTTTACTTT+TGG + chr7_4:44263541-44263560 Msa1156060:intron 20.0%
!!! TCTTTTGTTTTAATTCAAGA+AGG + chr7_4:44263567-44263586 Msa1156060:intron 20.0%
!! ATAATATGAAGTTCAATACA+AGG - chr7_4:44263725-44263744 None:intergenic 20.0%
!! TTGTATTGAACTTCATATTA+TGG + chr7_4:44263724-44263743 Msa1156060:intron 20.0%
!!! TTATTTGATAACACTGATTT+TGG + chr7_4:44263778-44263797 Msa1156060:intron 20.0%
!!! AAACTTTTTGTTGTTGAAAA+GGG + chr7_4:44264030-44264049 Msa1156060:intron 20.0%
!! AAATCAACTTTAAACAATCT+CGG - chr7_4:44265162-44265181 None:intergenic 20.0%
!!! GATTTTACCTTAAAATATGT+TGG + chr7_4:44265334-44265353 Msa1156060:intron 20.0%
!! TTTATAGAAAAATATGATGC+TGG - chr7_4:44265734-44265753 None:intergenic 20.0%
!!! ATAAATTTAATTTGATGCCT+AGG + chr7_4:44265921-44265940 Msa1156060:intron 20.0%
!!! ATTGTTTTCATATAAGTAAG+TGG - chr7_4:44266208-44266227 None:intergenic 20.0%
!!! TTTTGATGATTGAAACTTAT+TGG + chr7_4:44266354-44266373 Msa1156060:intron 20.0%
!! AGTATAGTATTTATAAAGAG+AGG + chr7_4:44266645-44266664 Msa1156060:exon 20.0%
!!! ATTTCTTAACAAGTTTTCTA+GGG + chr7_4:44266852-44266871 Msa1156060:three_prime_UTR 20.0%
!!! ACAAAAAGTTTGATTTTGCT+TGG - chr7_4:44264021-44264040 None:intergenic 25.0%
!!! CAAACTTTTTGTTGTTGAAA+AGG + chr7_4:44264029-44264048 Msa1156060:intron 25.0%
!! GAATAAAAAGCTAAAGGTTT+TGG - chr7_4:44264140-44264159 None:intergenic 25.0%
! ATGTGTGAATAAAAAGCTAA+AGG - chr7_4:44264146-44264165 None:intergenic 25.0%
!! TAGCTTTTTATTCACACATA+TGG + chr7_4:44264147-44264166 Msa1156060:intron 25.0%
!!! ATGAATTTTAAAAGGAAGGA+AGG - chr7_4:44264604-44264623 None:intergenic 25.0%
!!! CTGAATGAATTTTAAAAGGA+AGG - chr7_4:44264608-44264627 None:intergenic 25.0%
!! GGATCTGAATGAATTTTAAA+AGG - chr7_4:44264612-44264631 None:intergenic 25.0%
!!! TTATCTTTTTCATTTTCCGT+AGG + chr7_4:44264949-44264968 Msa1156060:intron 25.0%
!!! AATGAAGTTCCATTTGTTAT+TGG + chr7_4:44264981-44265000 Msa1156060:intron 25.0%
! AAAACAATGCCAATAACAAA+TGG - chr7_4:44264993-44265012 None:intergenic 25.0%
! TTCTAACTAATTTACTGCTA+CGG + chr7_4:44265060-44265079 Msa1156060:intron 25.0%
!! AGTTATCCCAACATATTTTA+AGG - chr7_4:44265344-44265363 None:intergenic 25.0%
! TTTGTTGCTCCTAAAATTAT+TGG + chr7_4:44265393-44265412 Msa1156060:CDS 25.0%
!! TTCTTTCCACCAATAATTTT+AGG - chr7_4:44265405-44265424 None:intergenic 25.0%
! AACAGTATCAGTATTTCAAA+GGG - chr7_4:44265531-44265550 None:intergenic 25.0%
! AAACAGTATCAGTATTTCAA+AGG - chr7_4:44265532-44265551 None:intergenic 25.0%
! AAATGTTTGAAAAACGTGTT+GGG - chr7_4:44266078-44266097 None:intergenic 25.0%
! AAATACTATACTGCTAAACT+AGG - chr7_4:44266637-44266656 None:intergenic 25.0%
!! GATTTCTTAACAAGTTTTCT+AGG + chr7_4:44266851-44266870 Msa1156060:three_prime_UTR 25.0%
!! TTCCTCTAAAATGTTGCAAA+GGG - chr7_4:44263424-44263443 None:intergenic 30.0%
!! TTTCCTCTAAAATGTTGCAA+AGG - chr7_4:44263425-44263444 None:intergenic 30.0%
CACTAGTAGTAAGATTATAG+AGG + chr7_4:44263502-44263521 Msa1156060:CDS 30.0%
!!! TTGATAACACTGATTTTGGT+TGG + chr7_4:44263782-44263801 Msa1156060:intron 30.0%
TTATTTAAGCATACCTCACA+GGG + chr7_4:44263979-44263998 Msa1156060:intron 30.0%
! GCTTTTGCTACTATTATTGA+AGG + chr7_4:44264055-44264074 Msa1156060:intron 30.0%
TATCAGTTCTTTATGTACTG+TGG + chr7_4:44264105-44264124 Msa1156060:intron 30.0%
!! ATGTGTTCTGTTTTATTGAC+AGG + chr7_4:44264174-44264193 Msa1156060:intron 30.0%
AGTTTGACATATTAAATCCG+CGG + chr7_4:44264817-44264836 Msa1156060:CDS 30.0%
!! ATGGAGTATTTTTATGATCG+AGG + chr7_4:44264846-44264865 Msa1156060:CDS 30.0%
!! TGGAGTATTTTTATGATCGA+GGG + chr7_4:44264847-44264866 Msa1156060:CDS 30.0%
CTTCATTTCAATTTCTCCTA+CGG - chr7_4:44264968-44264987 None:intergenic 30.0%
! ATTGTTAAGACACTTTTCTG+CGG + chr7_4:44265037-44265056 Msa1156060:intron 30.0%
TAGATTAAGGGCTATTACAT+AGG + chr7_4:44265274-44265293 Msa1156060:intron 30.0%
AATATGATGCTGGATTCATA+TGG - chr7_4:44265724-44265743 None:intergenic 30.0%
! TTTTCATCAGGCATTTGAAT+GGG - chr7_4:44265799-44265818 None:intergenic 30.0%
! ATTTTCATCAGGCATTTGAA+TGG - chr7_4:44265800-44265819 None:intergenic 30.0%
ATTCAAATGCCTGATGAAAA+TGG + chr7_4:44265799-44265818 Msa1156060:CDS 30.0%
GCACACAAAAAAAAATTACC+TGG - chr7_4:44265861-44265880 None:intergenic 30.0%
ACAACACAATAATACTGCAA+AGG - chr7_4:44265899-44265918 None:intergenic 30.0%
GAAATGTTTGAAAAACGTGT+TGG - chr7_4:44266079-44266098 None:intergenic 30.0%
TCAAACATTTCTCAAACTCT+TGG + chr7_4:44266088-44266107 Msa1156060:intron 30.0%
CAAACATTTCTCAAACTCTT+GGG + chr7_4:44266089-44266108 Msa1156060:intron 30.0%
AAACATTTCTCAAACTCTTG+GGG + chr7_4:44266090-44266109 Msa1156060:intron 30.0%
CTTATTTGAGCTTATCTGTT+CGG + chr7_4:44266127-44266146 Msa1156060:intron 30.0%
TTATTTGAGCTTATCTGTTC+GGG + chr7_4:44266128-44266147 Msa1156060:intron 30.0%
! GTGGTTTTCATATACTATCT+AGG - chr7_4:44266189-44266208 None:intergenic 30.0%
! AATACTTCAATGATAACGCT+TGG + chr7_4:44266268-44266287 Msa1156060:intron 30.0%
TGTTGTACAACAAGTAATGT+TGG - chr7_4:44266698-44266717 None:intergenic 30.0%
! GAAAGCACAGTAAATTGTTA+AGG + chr7_4:44266731-44266750 Msa1156060:three_prime_UTR 30.0%
! CTATTGTTGATTAAGCGATG+TGG + chr7_4:44262923-44262942 Msa1156060:exon 35.0%
!! AATGAGAAAGTGTTAGCGAT+TGG - chr7_4:44262958-44262977 None:intergenic 35.0%
! CTAGTTTAGTTTCACACACT+GGG - chr7_4:44263366-44263385 None:intergenic 35.0%
CAGTGTGTGAAACTAAACTA+GGG + chr7_4:44263365-44263384 Msa1156060:intron 35.0%
!! GGTTGATTCGTTTCTAACTA+TGG + chr7_4:44263803-44263822 Msa1156060:intron 35.0%
!! TCAACTCCCTTTGAAATTGA+AGG + chr7_4:44263875-44263894 Msa1156060:intron 35.0%
!! CAACTCCCTTTGAAATTGAA+GGG + chr7_4:44263876-44263895 Msa1156060:intron 35.0%
AACCTCCCTTCAATTTCAAA+GGG - chr7_4:44263884-44263903 None:intergenic 35.0%
! ACATTTTACCCTCATTTGTC+GGG - chr7_4:44263926-44263945 None:intergenic 35.0%
! CACATTTTACCCTCATTTGT+CGG - chr7_4:44263927-44263946 None:intergenic 35.0%
GTTATTTAAGCATACCTCAC+AGG + chr7_4:44263978-44263997 Msa1156060:intron 35.0%
TCTTTATGTACTGTGGTTAG+TGG + chr7_4:44264112-44264131 Msa1156060:intron 35.0%
CTTTATGTACTGTGGTTAGT+GGG + chr7_4:44264113-44264132 Msa1156060:intron 35.0%
GAAGAAGCTCTACAAATCAA+AGG - chr7_4:44264232-44264251 None:intergenic 35.0%
GCATACTTGAGAACAGAAAA+GGG - chr7_4:44264262-44264281 None:intergenic 35.0%
AGCATACTTGAGAACAGAAA+AGG - chr7_4:44264263-44264282 None:intergenic 35.0%
CTCGAAATTGCATAAACTGT+TGG + chr7_4:44264357-44264376 Msa1156060:intron 35.0%
TTCTTGTCTCATTACCTTCT+TGG + chr7_4:44264387-44264406 Msa1156060:intron 35.0%
! TTTTTCCTGTTACACCAAGA+AGG - chr7_4:44264404-44264423 None:intergenic 35.0%
TGAGACATTACAATGCGTAT+CGG - chr7_4:44264669-44264688 None:intergenic 35.0%
TACCATAGTTGTAACACAGA+GGG + chr7_4:44264740-44264759 Msa1156060:CDS 35.0%
GTTTGACATATTAAATCCGC+GGG + chr7_4:44264818-44264837 Msa1156060:CDS 35.0%
!! AGGGTATCTTTCAGTTTTCT+GGG + chr7_4:44264866-44264885 Msa1156060:CDS 35.0%
!! ATTTACTGCTACGGATTAGA+TGG + chr7_4:44265069-44265088 Msa1156060:intron 35.0%
GTACCACACAGTAATAATCT+TGG - chr7_4:44265226-44265245 None:intergenic 35.0%
! TACTTTTACTGCAGGAAATC+CGG + chr7_4:44265243-44265262 Msa1156060:intron 35.0%
CTATTACATAGGCAACAACA+GGG + chr7_4:44265285-44265304 Msa1156060:intron 35.0%
CTGTGATATTTATGTCTGTC+AGG + chr7_4:44265362-44265381 Msa1156060:intron 35.0%
GTTGCTCCTAAAATTATTGG+TGG + chr7_4:44265396-44265415 Msa1156060:CDS 35.0%
TGAATCAATCACTGTAATGC+AGG + chr7_4:44265594-44265613 Msa1156060:intron 35.0%
ATAAAAGTTTCCTCTGGTGA+TGG - chr7_4:44265682-44265701 None:intergenic 35.0%
TCAGCAATAAAAGTTTCCTC+TGG - chr7_4:44265688-44265707 None:intergenic 35.0%
ATTCATATGGAGAGACAGTA+GGG - chr7_4:44265711-44265730 None:intergenic 35.0%
TATAAAACATGGGATCCTCA+TGG + chr7_4:44265748-44265767 Msa1156060:CDS 35.0%
AAATTTGACAATGCACCATG+AGG - chr7_4:44265766-44265785 None:intergenic 35.0%
TACTACTGCAAAGGATTGTT+TGG + chr7_4:44265969-44265988 Msa1156060:CDS 35.0%
GAATAGGAAGGTCAATACAA+AGG + chr7_4:44266031-44266050 Msa1156060:CDS 35.0%
AGAGCCTCAATAAGTTAGAT+CGG + chr7_4:44266310-44266329 Msa1156060:intron 35.0%
AGAACCGATCTAACTTATTG+AGG - chr7_4:44266317-44266336 None:intergenic 35.0%
TCATCAAAACACTCAGCAAA+GGG - chr7_4:44266343-44266362 None:intergenic 35.0%
ATCATCAAAACACTCAGCAA+AGG - chr7_4:44266344-44266363 None:intergenic 35.0%
ATTGAGATCAGAGTTTCTTG+AGG + chr7_4:44266585-44266604 Msa1156060:CDS 35.0%
TTTACTGTGCTTTCACTATG+TGG - chr7_4:44266725-44266744 None:intergenic 35.0%
AACAAACGAGAAATGTCTAC+TGG - chr7_4:44266831-44266850 None:intergenic 35.0%
! AATTTAGGGTCCTCTTAACA+AGG - chr7_4:44266880-44266899 None:intergenic 35.0%
TGCTTTGCATTTGCAGATGA+TGG - chr7_4:44262986-44263005 None:intergenic 40.0%
ACAAGGCAAAACCTGAAGTA+GGG - chr7_4:44263289-44263308 None:intergenic 40.0%
AACAAGGCAAAACCTGAAGT+AGG - chr7_4:44263290-44263309 None:intergenic 40.0%
TGTACTTTGTGTGAGCAACA+AGG - chr7_4:44263306-44263325 None:intergenic 40.0%
! CCTAGTTTAGTTTCACACAC+TGG - chr7_4:44263367-44263386 None:intergenic 40.0%
CCAGTGTGTGAAACTAAACT+AGG + chr7_4:44263364-44263383 Msa1156060:intron 40.0%
TGTGTGAAACTAAACTAGGG+TGG + chr7_4:44263368-44263387 Msa1156060:intron 40.0%
GTGTGAAACTAAACTAGGGT+GGG + chr7_4:44263369-44263388 Msa1156060:intron 40.0%
TGTGAAACTAAACTAGGGTG+GGG + chr7_4:44263370-44263389 Msa1156060:intron 40.0%
! CACCCTTTGCAACATTTTAG+AGG + chr7_4:44263419-44263438 Msa1156060:CDS 40.0%
!! GGATTGCAAGTTGATCTTCT+TGG + chr7_4:44263470-44263489 Msa1156060:CDS 40.0%
AATAGTGGCTATAGCAGCAA+TGG - chr7_4:44263694-44263713 None:intergenic 40.0%
!! TACAAGGTGTCGTCAAATAG+TGG - chr7_4:44263709-44263728 None:intergenic 40.0%
CAACCTCCCTTCAATTTCAA+AGG - chr7_4:44263885-44263904 None:intergenic 40.0%
! TGCAATTTTCCCGACAAATG+AGG + chr7_4:44263914-44263933 Msa1156060:intron 40.0%
! GCAATTTTCCCGACAAATGA+GGG + chr7_4:44263915-44263934 Msa1156060:intron 40.0%
!! TCAAAGGAGCGTTAACAAGA+AGG - chr7_4:44264216-44264235 None:intergenic 40.0%
AAGTATGCTATGACTCTCGA+TGG + chr7_4:44264274-44264293 Msa1156060:CDS 40.0%
ACTGAAAACTCGTGCAAGAA+AGG - chr7_4:44264330-44264349 None:intergenic 40.0%
! CATTACCTTCTTGGTGTAAC+AGG + chr7_4:44264396-44264415 Msa1156060:intron 40.0%
TAGAAGCGATGCAATCATTG+TGG + chr7_4:44264497-44264516 Msa1156060:CDS 40.0%
AGAAGCGATGCAATCATTGT+GGG + chr7_4:44264498-44264517 Msa1156060:CDS 40.0%
CTACCATAGTTGTAACACAG+AGG + chr7_4:44264739-44264758 Msa1156060:CDS 40.0%
ACCATAGTTGTAACACAGAG+GGG + chr7_4:44264741-44264760 Msa1156060:CDS 40.0%
ATTAAATCCGCGGGATGTTA+TGG + chr7_4:44264827-44264846 Msa1156060:CDS 40.0%
AAATACTCCATAACATCCCG+CGG - chr7_4:44264837-44264856 None:intergenic 40.0%
!!! GAGGGTATCTTTCAGTTTTC+TGG + chr7_4:44264865-44264884 Msa1156060:CDS 40.0%
!! CTTTCAGTTTTCTGGGAATG+TGG + chr7_4:44264873-44264892 Msa1156060:CDS 40.0%
! TTCGTCTGGAGTAATTCACA+AGG + chr7_4:44264920-44264939 Msa1156060:CDS 40.0%
TGGGTGATCGAGATATGTAA+AGG - chr7_4:44265125-44265144 None:intergenic 40.0%
CTCGGTCAGTGATTTAGATT+GGG - chr7_4:44265144-44265163 None:intergenic 40.0%
TCTCGGTCAGTGATTTAGAT+TGG - chr7_4:44265145-44265164 None:intergenic 40.0%
ATCGTCTCACCTCAAATCAA+CGG + chr7_4:44265200-44265219 Msa1156060:intron 40.0%
!! TAATCTTGGCCGTTGATTTG+AGG - chr7_4:44265212-44265231 None:intergenic 40.0%
! ACTTTTACTGCAGGAAATCC+GGG + chr7_4:44265244-44265263 Msa1156060:intron 40.0%
GCTATTACATAGGCAACAAC+AGG + chr7_4:44265284-44265303 Msa1156060:intron 40.0%
!! AATCGATGTTTGCTATCAGC+AGG + chr7_4:44265482-44265501 Msa1156060:CDS 40.0%
TCAATCACTGTAATGCAGGT+TGG + chr7_4:44265598-44265617 Msa1156060:intron 40.0%
AATCCACTAACAAGCATGTC+TGG - chr7_4:44265625-44265644 None:intergenic 40.0%
TCTTCAACCGTTACCAGATA+CGG + chr7_4:44265645-44265664 Msa1156060:CDS 40.0%
GATTCATATGGAGAGACAGT+AGG - chr7_4:44265712-44265731 None:intergenic 40.0%
!! ACGTTTTCGCCATTTTCATC+AGG - chr7_4:44265811-44265830 None:intergenic 40.0%
AAAATGGCGAAAACGTGACT+TGG + chr7_4:44265815-44265834 Msa1156060:CDS 40.0%
AGTGGATGATACTACTGCAA+AGG + chr7_4:44265960-44265979 Msa1156060:CDS 40.0%
AAGAAGCTGCTAGAATAGGA+AGG + chr7_4:44266019-44266038 Msa1156060:CDS 40.0%
ACTTATTGGACCTGCAGATA+AGG + chr7_4:44266368-44266387 Msa1156060:intron 40.0%
ATCTTCATGTTGTCCCAATC+AGG - chr7_4:44266394-44266413 None:intergenic 40.0%
GAAGATCGATGTCATGTACT+CGG + chr7_4:44266408-44266427 Msa1156060:CDS 40.0%
AGCAGCATAGAACTCAAATG+CGG - chr7_4:44266460-44266479 None:intergenic 40.0%
! TTCTCCCCATGATCTCTTTT+GGG + chr7_4:44266510-44266529 Msa1156060:CDS 40.0%
GGAGAAGGCTTGAATTATCT+CGG + chr7_4:44266547-44266566 Msa1156060:CDS 40.0%
! TTCTAGGGATCCTTGTTAAG+AGG + chr7_4:44266867-44266886 Msa1156060:three_prime_UTR 40.0%
ACTTCTCCTCATCCCAACTT+CGG + chr7_4:44263087-44263106 Msa1156060:CDS 45.0%
TTCCATGTTCAGGTAAGCAG+TGG - chr7_4:44263229-44263248 None:intergenic 45.0%
TAAACTAGGGTGGGGTCAAA+AGG + chr7_4:44263378-44263397 Msa1156060:intron 45.0%
AAACTAGGGTGGGGTCAAAA+GGG + chr7_4:44263379-44263398 Msa1156060:intron 45.0%
GGGGTCAAAAGGGTTGTTAT+TGG + chr7_4:44263389-44263408 Msa1156060:CDS 45.0%
!! GCAAGTTGATCTTCTTGGAG+AGG + chr7_4:44263475-44263494 Msa1156060:CDS 45.0%
GTGTACTGTACAGTGACTTG+TGG + chr7_4:44263601-44263620 Msa1156060:intron 45.0%
TAATGCTAGTAAGTCCCGTG+AGG + chr7_4:44263827-44263846 Msa1156060:intron 45.0%
AATGCTAGTAAGTCCCGTGA+GGG + chr7_4:44263828-44263847 Msa1156060:intron 45.0%
TCATTCTGATTGACCCTCAC+GGG - chr7_4:44263844-44263863 None:intergenic 45.0%
CTCATTCTGATTGACCCTCA+CGG - chr7_4:44263845-44263864 None:intergenic 45.0%
!! CTCCCTTTGAAATTGAAGGG+AGG + chr7_4:44263879-44263898 Msa1156060:intron 45.0%
GGAAAAATTGCTGCTAGCAC+TGG + chr7_4:44264417-44264436 Msa1156060:intron 45.0%
TAGCTCGCAGCTCAAAAACT+AGG - chr7_4:44264479-44264498 None:intergenic 45.0%
TGGGAGGAAATACAGTTCGA+AGG + chr7_4:44264517-44264536 Msa1156060:CDS 45.0%
GGGAGGAAATACAGTTCGAA+GGG + chr7_4:44264518-44264537 Msa1156060:CDS 45.0%
AAACCTATGGGACATGTCTG+AGG + chr7_4:44264713-44264732 Msa1156060:CDS 45.0%
AAACCTCAGACATGTCCCAT+AGG - chr7_4:44264719-44264738 None:intergenic 45.0%
ACCCCTCTGTGTTACAACTA+TGG - chr7_4:44264745-44264764 None:intergenic 45.0%
!! TCAGTTTTCTGGGAATGTGG+AGG + chr7_4:44264876-44264895 Msa1156060:CDS 45.0%
CGGCCAAGATTATTACTGTG+TGG + chr7_4:44265220-44265239 Msa1156060:intron 45.0%
! CTGTGTGGTACTTTTACTGC+AGG + chr7_4:44265235-44265254 Msa1156060:intron 45.0%
! TCCGGGTCTGCTTTAGATTA+AGG + chr7_4:44265261-44265280 Msa1156060:intron 45.0%
! CCCTTAATCTAAAGCAGACC+CGG - chr7_4:44265265-44265284 None:intergenic 45.0%
! CCGGGTCTGCTTTAGATTAA+GGG + chr7_4:44265262-44265281 Msa1156060:intron 45.0%
CAACAACAGGGTCACATAGT+TGG + chr7_4:44265297-44265316 Msa1156060:intron 45.0%
AAAGAATGCACCATCTCCTG+TGG + chr7_4:44265419-44265438 Msa1156060:CDS 45.0%
AAGAATGCACCATCTCCTGT+GGG + chr7_4:44265420-44265439 Msa1156060:CDS 45.0%
!! TCCTCTGGTGATGGAATTGT+CGG - chr7_4:44265673-44265692 None:intergenic 45.0%
TCAGGCATTTGAATGGGATG+AGG - chr7_4:44265793-44265812 None:intergenic 45.0%
!! AAACGTGACTTGGTTGAGTG+TGG + chr7_4:44265825-44265844 Msa1156060:CDS 45.0%
CCTATTCTAGCAGCTTCTTC+TGG - chr7_4:44266018-44266037 None:intergenic 45.0%
CCAGAAGAAGCTGCTAGAAT+AGG + chr7_4:44266015-44266034 Msa1156060:CDS 45.0%
TCAAACTCTTGGGGTCTGTT+TGG + chr7_4:44266099-44266118 Msa1156060:intron 45.0%
GCAGCATAGAACTCAAATGC+GGG - chr7_4:44266459-44266478 None:intergenic 45.0%
!! TCTATGCTGCTTTCAACTGC+CGG + chr7_4:44266469-44266488 Msa1156060:CDS 45.0%
! CTTCTCCCCATGATCTCTTT+TGG + chr7_4:44266509-44266528 Msa1156060:CDS 45.0%
! TCTCCCCATGATCTCTTTTG+GGG + chr7_4:44266511-44266530 Msa1156060:CDS 45.0%
ATGAGGAGAAGTGAAACCGG+CGG - chr7_4:44263079-44263098 None:intergenic 50.0%
GGGATGAGGAGAAGTGAAAC+CGG - chr7_4:44263082-44263101 None:intergenic 50.0%
GGAAGTAACGGCCTGAACTT+CGG - chr7_4:44263184-44263203 None:intergenic 50.0%
AGCCACTGCTTACCTGAACA+TGG + chr7_4:44263224-44263243 Msa1156060:CDS 50.0%
GCTTACCTGAACATGGAACC+TGG + chr7_4:44263231-44263250 Msa1156060:CDS 50.0%
AGTCACCAGGTTCCATGTTC+AGG - chr7_4:44263239-44263258 None:intergenic 50.0%
ATGGAACCTGGTGACTGTGA+CGG + chr7_4:44263243-44263262 Msa1156060:CDS 50.0%
GTGCGTGCACTTAGAAGTCA+AGG + chr7_4:44263449-44263468 Msa1156060:CDS 50.0%
CGTGAGGGTCAATCAGAATG+AGG + chr7_4:44263843-44263862 Msa1156060:intron 50.0%
GAAATTGAAGGGAGGTTGCC+AGG + chr7_4:44263887-44263906 Msa1156060:intron 50.0%
TCGGGAAAATTGCACCAACC+TGG - chr7_4:44263908-44263927 None:intergenic 50.0%
AGTTGCACTCATACCCTGTG+AGG - chr7_4:44263995-44264014 None:intergenic 50.0%
TGCTATGACTCTCGATGGTG+AGG + chr7_4:44264279-44264298 Msa1156060:intron 50.0%
GCTATGACTCTCGATGGTGA+GGG + chr7_4:44264280-44264299 Msa1156060:intron 50.0%
TGCAGCTTATCCACCATGCA+TGG - chr7_4:44264443-44264462 None:intergenic 50.0%
AGCGATGCAATCATTGTGGG+AGG + chr7_4:44264501-44264520 Msa1156060:CDS 50.0%
CCATGTCTGGCTGTCAATCT+TGG - chr7_4:44264633-44264652 None:intergenic 50.0%
CCAAGATTGACAGCCAGACA+TGG + chr7_4:44264630-44264649 Msa1156060:CDS 50.0%
AGATTGACAGCCAGACATGG+AGG + chr7_4:44264633-44264652 Msa1156060:CDS 50.0%
TTCCAGAGGAGGCAAACCTA+TGG + chr7_4:44264700-44264719 Msa1156060:CDS 50.0%
TCCAGAGGAGGCAAACCTAT+GGG + chr7_4:44264701-44264720 Msa1156060:CDS 50.0%
! TTGTAACACAGAGGGGTGCA+AGG + chr7_4:44264748-44264767 Msa1156060:CDS 50.0%
CTTTAGACGCAAGCAGCTTC+TGG - chr7_4:44264782-44264801 None:intergenic 50.0%
CAGAAGCTGCTTGCGTCTAA+AGG + chr7_4:44264780-44264799 Msa1156060:CDS 50.0%
CTGGGAATGTGGAGGAACAT+TGG + chr7_4:44264884-44264903 Msa1156060:CDS 50.0%
CATCTCCTGTGGGTGATCTT+GGG + chr7_4:44265430-44265449 Msa1156060:CDS 50.0%
! GGTCCAGACATGCTTGTTAG+TGG + chr7_4:44265619-44265638 Msa1156060:CDS 50.0%
ACCGACAATTCCATCACCAG+AGG + chr7_4:44265669-44265688 Msa1156060:CDS 50.0%
! GAGTGTGGAGCATTACTACC+AGG + chr7_4:44265840-44265859 Msa1156060:CDS 50.0%
GTGTTGGGTCATACCAGATC+AGG - chr7_4:44266063-44266082 None:intergenic 50.0%
ACCTGCAGATAAGGCCTGAT+TGG + chr7_4:44266377-44266396 Msa1156060:intron 50.0%
CCTGCAGATAAGGCCTGATT+GGG + chr7_4:44266378-44266397 Msa1156060:intron 50.0%
AGCCTCAACTAGAACCGAAC+CGG - chr7_4:44266491-44266510 None:intergenic 50.0%
TCCGCCCCAAAAGAGATCAT+GGG - chr7_4:44266518-44266537 None:intergenic 50.0%
GGATTTGTCAGCGATGAGGG+CGG - chr7_4:44263058-44263077 None:intergenic 55.0%
! GGCGGATTTGTCAGCGATGA+GGG - chr7_4:44263061-44263080 None:intergenic 55.0%
CTCATCGCTGACAAATCCGC+CGG + chr7_4:44263060-44263079 Msa1156060:CDS 55.0%
CGCGTAGAGGTAACCTTCAC+CGG - chr7_4:44263145-44263164 None:intergenic 55.0%
GAAGGTTACCTCTACGCGCA+AGG + chr7_4:44263147-44263166 Msa1156060:CDS 55.0%
TAACGGCCTGAACTTCGGCA+GGG - chr7_4:44263179-44263198 None:intergenic 55.0%
TCAGGTAAGCAGTGGCTCCA+CGG - chr7_4:44263221-44263240 None:intergenic 55.0%
TTGTCACCGTCACAGTCACC+AGG - chr7_4:44263252-44263271 None:intergenic 55.0%
TGCTGTGTCTGCCCTACTTC+AGG + chr7_4:44263275-44263294 Msa1156060:CDS 55.0%
TTGAAGGGAGGTTGCCAGGT+TGG + chr7_4:44263891-44263910 Msa1156060:intron 55.0%
TTGACAGCCAGACATGGAGG+TGG + chr7_4:44264636-44264655 Msa1156060:CDS 55.0%
TGACAGCCAGACATGGAGGT+GGG + chr7_4:44264637-44264656 Msa1156060:CDS 55.0%
CATATGCCCACCTCCATGTC+TGG - chr7_4:44264646-44264665 None:intergenic 55.0%
TCAGTCCCTCGATCTTCCAG+AGG + chr7_4:44264686-44264705 Msa1156060:CDS 55.0%
! TGCCTCCTCTGGAAGATCGA+GGG - chr7_4:44264694-44264713 None:intergenic 55.0%
! TTGCCTCCTCTGGAAGATCG+AGG - chr7_4:44264695-44264714 None:intergenic 55.0%
TCCCATAGGTTTGCCTCCTC+TGG - chr7_4:44264705-44264724 None:intergenic 55.0%
!! GCTGCGTCTGCTATTTCGTC+TGG + chr7_4:44264906-44264925 Msa1156060:CDS 55.0%
CCAAGATCACCCACAGGAGA+TGG - chr7_4:44265432-44265451 None:intergenic 55.0%
CCATCTCCTGTGGGTGATCT+TGG + chr7_4:44265429-44265448 Msa1156060:CDS 55.0%
TCCTGTGGGTGATCTTGGGA+TGG + chr7_4:44265434-44265453 Msa1156060:CDS 55.0%
ACCATCCCAAGATCACCCAC+AGG - chr7_4:44265438-44265457 None:intergenic 55.0%
!! GTCGGTGCCGTATCTGGTAA+CGG - chr7_4:44265655-44265674 None:intergenic 55.0%
!! GGAATTGTCGGTGCCGTATC+TGG - chr7_4:44265661-44265680 None:intergenic 55.0%
TCCAACGAACTTGTGCGCCT+AGG - chr7_4:44265941-44265960 None:intergenic 55.0%
ACAAAGGCAGCGTCCTGATC+TGG + chr7_4:44266047-44266066 Msa1156060:CDS 55.0%
! CCCAATCAGGCCTTATCTGC+AGG - chr7_4:44266381-44266400 None:intergenic 55.0%
! GCTGCTTTCAACTGCCGGTT+CGG + chr7_4:44266474-44266493 Msa1156060:CDS 55.0%
!! TGCCGGTTCGGTTCTAGTTG+AGG + chr7_4:44266486-44266505 Msa1156060:CDS 55.0%
CCGCCCCAAAAGAGATCATG+GGG - chr7_4:44266517-44266536 None:intergenic 55.0%
!! CCCCATGATCTCTTTTGGGG+CGG + chr7_4:44266514-44266533 Msa1156060:CDS 55.0%
CTCCGCCCCAAAAGAGATCA+TGG - chr7_4:44266519-44266538 None:intergenic 55.0%
!!! CATGATCTCTTTTGGGGCGG+AGG + chr7_4:44266517-44266536 Msa1156060:CDS 55.0%
! CGGCGGATTTGTCAGCGATG+AGG - chr7_4:44263062-44263081 None:intergenic 60.0%
ACGCAGCCGAAGTTGGGATG+AGG - chr7_4:44263096-44263115 None:intergenic 60.0%
GCGATGACGCAGCCGAAGTT+GGG - chr7_4:44263102-44263121 None:intergenic 60.0%
TACCTCCCCTGCCGAAGTTC+AGG + chr7_4:44263170-44263189 Msa1156060:CDS 60.0%
AACGGCCTGAACTTCGGCAG+GGG - chr7_4:44263178-44263197 None:intergenic 60.0%
GTAACGGCCTGAACTTCGGC+AGG - chr7_4:44263180-44263199 None:intergenic 60.0%
GTTCAGGCCGTTACTTCCGC+CGG + chr7_4:44263186-44263205 Msa1156060:CDS 60.0%
!! CTGCTAGCACTGGCCATGCA+TGG + chr7_4:44264427-44264446 Msa1156060:CDS 60.0%
!! CTAGCACTGGCCATGCATGG+TGG + chr7_4:44264430-44264449 Msa1156060:CDS 60.0%
GTCCCTCGATCTTCCAGAGG+AGG + chr7_4:44264689-44264708 Msa1156060:CDS 60.0%
GCCTAGGCGCACAAGTTCGT+TGG + chr7_4:44265937-44265956 Msa1156060:intron 60.0%
GGCGCACAAGTTCGTTGGAG+TGG + chr7_4:44265942-44265961 Msa1156060:intron 60.0%
!!! TTTTGGGGCGGAGGTCGAGA+AGG + chr7_4:44266526-44266545 Msa1156060:CDS 60.0%
GGCGATGACGCAGCCGAAGT+TGG - chr7_4:44263103-44263122 None:intergenic 65.0%
ACCTTCACCGGCGACATCGC+CGG - chr7_4:44263133-44263152 None:intergenic 65.0%
!! GGGAGGTACCTTGCGCGTAG+AGG - chr7_4:44263158-44263177 None:intergenic 65.0%
ACGCTCGCCGGCGGAAGTAA+CGG - chr7_4:44263196-44263215 None:intergenic 65.0%
GGCGGAGGTCGAGAAGGAGA+AGG + chr7_4:44266532-44266551 Msa1156060:CDS 65.0%
CACAACCACGCGCTCGACGC+CGG + chr7_4:44263018-44263037 Msa1156060:CDS 70.0%
ACAACCACGCGCTCGACGCC+GGG + chr7_4:44263019-44263038 Msa1156060:CDS 70.0%
! TATACCCGGCGTCGAGCGCG+TGG - chr7_4:44263026-44263045 None:intergenic 70.0%
GGCGGCGCGTCGGATATACC+CGG - chr7_4:44263040-44263059 None:intergenic 70.0%
TGCGTCATCGCCACCCCCTC+CGG + chr7_4:44263111-44263130 Msa1156060:CDS 70.0%
TCACCGGCGACATCGCCGGA+GGG - chr7_4:44263129-44263148 None:intergenic 70.0%
TTCACCGGCGACATCGCCGG+AGG - chr7_4:44263130-44263149 None:intergenic 70.0%
TCCGGCGATGTCGCCGGTGA+AGG + chr7_4:44263129-44263148 Msa1156060:CDS 70.0%
GGCCTGAACTTCGGCAGGGG+AGG - chr7_4:44263175-44263194 None:intergenic 70.0%
CAGCGATGAGGGCGGCGCGT+CGG - chr7_4:44263050-44263069 None:intergenic 75.0%
ACCCCCTCCGGCGATGTCGC+CGG + chr7_4:44263123-44263142 Msa1156060:CDS 75.0%
ACCGGCGACATCGCCGGAGG+GGG - chr7_4:44263127-44263146 None:intergenic 75.0%
CACCGGCGACATCGCCGGAG+GGG - chr7_4:44263128-44263147 None:intergenic 75.0%
TCCACGGCAACGCTCGCCGG+CGG - chr7_4:44263205-44263224 None:intergenic 75.0%
GGCTCCACGGCAACGCTCGC+CGG - chr7_4:44263208-44263227 None:intergenic 75.0%
! GGCGACATCGCCGGAGGGGG+TGG - chr7_4:44263124-44263143 None:intergenic 80.0%
!! TCCGCCGGCGAGCGTTGCCG+TGG + chr7_4:44263201-44263220 Msa1156060:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44262886 44266902 44262886 ID=Msa1156060;Name=Msa1156060
chr7_4 mRNA 44262886 44266902 44262886 ID=Msa1156060-mRNA-1;Parent=Msa1156060;Name=Msa1156060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=54|1|1|1|1|1|9|251|597
chr7_4 exon 44262886 44263296 44262886 ID=Msa1156060-mRNA-1:exon:11230;Parent=Msa1156060-mRNA-1
chr7_4 exon 44263386 44263523 44263386 ID=Msa1156060-mRNA-1:exon:11231;Parent=Msa1156060-mRNA-1
chr7_4 exon 44264196 44264295 44264196 ID=Msa1156060-mRNA-1:exon:11232;Parent=Msa1156060-mRNA-1
chr7_4 exon 44264418 44264543 44264418 ID=Msa1156060-mRNA-1:exon:11233;Parent=Msa1156060-mRNA-1
chr7_4 exon 44264628 44264941 44264628 ID=Msa1156060-mRNA-1:exon:11234;Parent=Msa1156060-mRNA-1
chr7_4 exon 44265384 44265503 44265384 ID=Msa1156060-mRNA-1:exon:11235;Parent=Msa1156060-mRNA-1
chr7_4 exon 44265616 44265861 44265616 ID=Msa1156060-mRNA-1:exon:11236;Parent=Msa1156060-mRNA-1
chr7_4 exon 44265943 44266068 44265943 ID=Msa1156060-mRNA-1:exon:11237;Parent=Msa1156060-mRNA-1
chr7_4 exon 44266385 44266902 44266385 ID=Msa1156060-mRNA-1:exon:11238;Parent=Msa1156060-mRNA-1
chr7_4 five_prime_UTR 44262886 44262939 44262886 ID=Msa1156060-mRNA-1:five_prime_utr;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44262940 44263296 44262940 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44263386 44263523 44263386 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44264196 44264295 44264196 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44264418 44264543 44264418 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44264628 44264941 44264628 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44265384 44265503 44265384 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44265616 44265861 44265616 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44265943 44266068 44265943 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 CDS 44266385 44266651 44266385 ID=Msa1156060-mRNA-1:cds;Parent=Msa1156060-mRNA-1
chr7_4 three_prime_UTR 44266652 44266902 44266652 ID=Msa1156060-mRNA-1:three_prime_utr;Parent=Msa1156060-mRNA-1
Gene Sequence

>Msa1156060

ATGTGGTGTCTCACTCCAATCGCTAACACTTTCTCATTCTCATCCATCATCTGCAAATGCAAAGCATCTAATGACTCTCACAACCACGCGCTCGACGCCGGGTATATCCGACGCGCCGCCCTCATCGCTGACAAATCCGCCGGTTTCACTTCTCCTCATCCCAACTTCGGCTGCGTCATCGCCACCCCCTCCGGCGATGTCGCCGGTGAAGGTTACCTCTACGCGCAAGGTACCTCCCCTGCCGAAGTTCAGGCCGTTACTTCCGCCGGCGAGCGTTGCCGTGGAGCCACTGCTTACCTGAACATGGAACCTGGTGACTGTGACGGTGACAATACTGCTGTGTCTGCCCTACTTCAGGGTGGGGTCAAAAGGGTTGTTATTGGAATGAGACACCCTTTGCAACATTTTAGAGGAAATGCTGTGCGTGCACTTAGAAGTCAAGGATTGCAAGTTGATCTTCTTGGAGAGGAACTCACTAGTAGTAAGATTATAGAGGATGCTCAAAAAGAATGCCTTCTTGTTAACGCTCCTTTGATTTGTAGAGCTTCTTCGCGTGTACCCTTTTCTGTTCTCAAGTATGCTATGACTCTCGATGGAAAAATTGCTGCTAGCACTGGCCATGCATGGTGGATAAGCTGCAAGCAATCTAGAAACCTAGTTTTTGAGCTGCGAGCTAGAAGCGATGCAATCATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGATTGACAGCCAGACATGGAGGTGGGCATATGCCGATACGCATTGTAATGTCTCAGTCCCTCGATCTTCCAGAGGAGGCAAACCTATGGGACATGTCTGAGGTTTCTACCATAGTTGTAACACAGAGGGGTGCAAGGAGAAGTCTCCAGAAGCTGCTTGCGTCTAAAGGAGTTGAAGTTGTAGAGTTTGACATATTAAATCCGCGGGATGTTATGGAGTATTTTTATGATCGAGGGTATCTTTCAGTTTTCTGGGAATGTGGAGGAACATTGGCTGCGTCTGCTATTTCGTCTGGAGTAATTCACAAGGTTTATGCATTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAAGCTATAAATCTAATCGATGTTTGCTATCAGCAGGTTGGTCCAGACATGCTTGTTAGTGGATTTCTTCAACCGTTACCAGATACGGCACCGACAATTCCATCACCAGAGGAAACTTTTATTGCTGACCCTACTGTCTCTCCATATGAATCCAGCATCATATTTTTCTATAAAACATGGGATCCTCATGGTGCATTGTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGCGAAAACGTGACTTGGTTGAGTGTGGAGCATTACTACCAGGCGCACAAGTTCGTTGGAGTGGATGATACTACTGCAAAGGATTGTTTGGAAAAGATCAAATCTGTAAAAAGTCCAGAAGAAGCTGCTAGAATAGGAAGGTCAATACAAAGGCAGCGTCCTGATCTGATAAGGCCTGATTGGGACAACATGAAGATCGATGTCATGTACTCGGCACTGAAATGCAAGTTCTCAACATACCCGCATTTGAGTTCTATGCTGCTTTCAACTGCCGGTTCGGTTCTAGTTGAGGCTTCTCCCCATGATCTCTTTTGGGGCGGAGGTCGAGAAGGAGAAGGCTTGAATTATCTCGGACGACTGTTGATGAAATTGAGATCAGAGTTTCTTGAGGAATCATCTTCGTCGTCAAACGAGTCTCCTAGTTTAGCAGTATAG

Protein sequence

>Msa1156060

MWCLTPIANTFSFSSIICKCKASNDSHNHALDAGYIRRAALIADKSAGFTSPHPNFGCVIATPSGDVAGEGYLYAQGTSPAEVQAVTSAGERCRGATAYLNMEPGDCDGDNTAVSALLQGGVKRVVIGMRHPLQHFRGNAVRALRSQGLQVDLLGEELTSSKIIEDAQKECLLVNAPLICRASSRVPFSVLKYAMTLDGKIAASTGHAWWISCKQSRNLVFELRARSDAIIVGGNTVRRDNPRLTARHGGGHMPIRIVMSQSLDLPEEANLWDMSEVSTIVVTQRGARRSLQKLLASKGVEVVEFDILNPRDVMEYFYDRGYLSVFWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQAINLIDVCYQQVGPDMLVSGFLQPLPDTAPTIPSPEETFIADPTVSPYESSIIFFYKTWDPHGALSNFSPHPIQMPDENGENVTWLSVEHYYQAHKFVGVDDTTAKDCLEKIKSVKSPEEAARIGRSIQRQRPDLIRPDWDNMKIDVMYSALKCKFSTYPHLSSMLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMKLRSEFLEESSSSSNESPSLAV*