AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429180 MtrunA17_Chr3g0146001 94.514 401 6 3 1 393 1 393 0.0 764
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429180 AT4G35250.1 93.051 331 23 0 63 393 65 395 0.0 650

Find 128 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATAAATTTAAGATTAT+TGG 0.101403 tig0026448:+55658 Msa1429180:five_prime_UTR
ATTCCAATGCAGGGTCTTAT+TGG 0.228861 tig0026448:+56596 Msa1429180:intron
CTCTAATGTAATTATATCTT+TGG 0.230175 tig0026448:-57586 None:intergenic
GAGAACTTCCTCCGTGATTC+TGG 0.246351 tig0026448:+56455 Msa1429180:CDS
AGCTGACTTCCTTCGTGATT+GGG 0.252587 tig0026448:+56184 Msa1429180:CDS
CAGCTGACTTCCTTCGTGAT+TGG 0.278974 tig0026448:+56183 Msa1429180:CDS
AGTATCCATGTAAGCGATTC+TGG 0.290196 tig0026448:-56675 None:intergenic
AGTATACTTGTTGGCCTAAC+AGG 0.305613 tig0026448:-56062 None:intergenic
GGTAAACTTCTTACATTTGC+TGG 0.307705 tig0026448:+56840 Msa1429180:CDS
CTGACGAGTGAGTCTTAAAA+TGG 0.323717 tig0026448:-56949 None:intergenic
TGGCTGTTGGTAACCTCATC+AGG 0.328407 tig0026448:-55857 None:intergenic
TATAAATTAACCAATGTGTT+TGG 0.334141 tig0026448:-57830 None:intergenic
GTTGGAGCCACGGGGACTTT+GGG 0.335711 tig0026448:+56089 Msa1429180:CDS
CACTTCTCACTATGTACATT+TGG 0.339648 tig0026448:-57894 None:intergenic
TTATTCTTAAATACGCTTGC+CGG 0.343333 tig0026448:+57745 Msa1429180:three_prime_UTR
CTTTGGGAAGGCAGATTGTT+CGG 0.350602 tig0026448:+56105 Msa1429180:CDS
CAGGATGTTTGTCGCAGTTA+TGG 0.353588 tig0026448:-56400 None:intergenic
TACATTAGAGAAGTATTTGC+AGG 0.361917 tig0026448:+57599 Msa1429180:CDS
TATTGGATTGGAAGGAGTAT+TGG 0.362278 tig0026448:+55758 Msa1429180:five_prime_UTR
ACTATTCCTGCTACATTAGT+TGG 0.362432 tig0026448:+56245 Msa1429180:CDS
TGGAAGAAGGATTATTAGAG+TGG 0.364586 tig0026448:+55962 Msa1429180:CDS
TTCTTACGTGGGCTTACAAT+TGG 0.375224 tig0026448:+57786 Msa1429180:three_prime_UTR
GGTTGGAGCCACGGGGACTT+TGG 0.381360 tig0026448:+56088 Msa1429180:CDS
GCCTATCAAAACAGTTGATT+GGG 0.393639 tig0026448:+56310 Msa1429180:CDS
ACATTGTGTGAGAGGCTTGC+GGG 0.395591 tig0026448:+56894 Msa1429180:CDS
TCAGAGAGGGCGGTGAATCT+TGG 0.400193 tig0026448:+56029 Msa1429180:CDS
AGCCTATCAAAACAGTTGAT+TGG 0.402139 tig0026448:+56309 Msa1429180:CDS
CACACAATGTAATCACCTCT+TGG 0.411787 tig0026448:-56881 None:intergenic
AGGATACGACGTCCGGTGTC+TGG 0.418347 tig0026448:+56142 Msa1429180:CDS
ATCTCCATGAGTGGGACCTC+AGG 0.428640 tig0026448:-56419 None:intergenic
ATACTTGTGGTTGGAGCCAC+GGG 0.432518 tig0026448:+56080 Msa1429180:CDS
CACATTGTCATCCGTTTATG+TGG 0.441513 tig0026448:+56485 Msa1429180:CDS
AAATATCTGATTGTTTCGAC+TGG 0.443973 tig0026448:-57665 None:intergenic
CGAGAATAGGAACAGCATAC+TGG 0.446584 tig0026448:-56619 None:intergenic
ACTGTTATTGACTGCGCCAC+TGG 0.449162 tig0026448:+56275 Msa1429180:CDS
CTTGCATGAAACCACATAAA+CGG 0.459989 tig0026448:-56496 None:intergenic
ATCCGTTGATGAAAGATAAG+AGG 0.462994 tig0026448:+55682 Msa1429180:five_prime_UTR
CTGTAGTTACATTAGCATCT+TGG 0.467915 tig0026448:-56917 None:intergenic
TTGGACCAGGGACACCTGTT+AGG 0.469779 tig0026448:+56048 Msa1429180:CDS
TGCATACGAGGTAATGTTGT+GGG 0.476275 tig0026448:+57711 Msa1429180:three_prime_UTR
TATTTATGAATTGTGTCAGT+TGG 0.477239 tig0026448:+58044 Msa1429180:three_prime_UTR
GTTGGCCTAACAGGTGTCCC+TGG 0.478236 tig0026448:-56053 None:intergenic
CATGTAAGCGATTCTGGTGG+GGG 0.487749 tig0026448:-56669 None:intergenic
ATTCAATGTGCTAAAGCAAT+GGG 0.487829 tig0026448:+56350 Msa1429180:CDS
AAGTCAGCTGGAGCAGGCCT+CGG 0.491663 tig0026448:-56170 None:intergenic
ATAATGATCAGGAGGAGTAT+TGG 0.492930 tig0026448:+55741 Msa1429180:five_prime_UTR
GATCAGGAGGAGTATTGGAT+TGG 0.494164 tig0026448:+55746 Msa1429180:five_prime_UTR
GACGTGGCAAAATAATGATC+AGG 0.496951 tig0026448:+55730 Msa1429180:five_prime_UTR
AGGAGGAGTATTGGATTGGA+AGG 0.498034 tig0026448:+55750 Msa1429180:five_prime_UTR
GAACATATTGAAGAAGTTGA+AGG 0.506295 tig0026448:+57632 Msa1429180:CDS
CGAAGGAAGTCAGCTGGAGC+AGG 0.509309 tig0026448:-56176 None:intergenic
TATTCAATGTGCTAAAGCAA+TGG 0.515599 tig0026448:+56349 Msa1429180:CDS
CCCCACCAGAATCGCTTACA+TGG 0.515621 tig0026448:+56670 Msa1429180:CDS
ACGACGTCCGGTGTCTGGTA+AGG 0.516950 tig0026448:+56147 Msa1429180:CDS
CCATGTAAGCGATTCTGGTG+GGG 0.516968 tig0026448:-56670 None:intergenic
GCAGATTGTTCGGAGGGCAC+TGG 0.517013 tig0026448:+56115 Msa1429180:CDS
TCCGGTGTCTGGTAAGGCCG+AGG 0.517171 tig0026448:+56153 Msa1429180:CDS
TGAACTCCAACTAATGTAGC+AGG 0.522361 tig0026448:-56251 None:intergenic
AACTCAACAAAATGAGTACT+AGG 0.522968 tig0026448:-55930 None:intergenic
CCAACCACAAGTATACTTGT+TGG 0.527488 tig0026448:-56071 None:intergenic
AAATGATGTTGCTGACAGAT+TGG 0.529217 tig0026448:+56995 Msa1429180:CDS
GCTGACTTCCTTCGTGATTG+GGG 0.529696 tig0026448:+56185 Msa1429180:CDS
GAGCCACGGGGACTTTGGGA+AGG 0.531810 tig0026448:+56093 Msa1429180:CDS
TGAGTACTAGGATAAAGAAC+AGG 0.532816 tig0026448:-55918 None:intergenic
GGAAGAAGGATTATTAGAGT+GGG 0.533884 tig0026448:+55963 Msa1429180:CDS
ACACAATGTAATCACCTCTT+GGG 0.536741 tig0026448:-56880 None:intergenic
ATGTTTGTCGCAGTTATGGA+TGG 0.537280 tig0026448:-56396 None:intergenic
ACATCCTGAGGTCCCACTCA+TGG 0.537298 tig0026448:+56415 Msa1429180:CDS
CAATCACGAAGGAAGTCAGC+TGG 0.537462 tig0026448:-56182 None:intergenic
TATACTTGTGGTTGGAGCCA+CGG 0.537842 tig0026448:+56079 Msa1429180:CDS
AGGTTGTATGTCTCCGCCAT+TGG 0.538477 tig0026448:-57549 None:intergenic
AATGTAGCAGGAATAGTCTC+AGG 0.539300 tig0026448:-56239 None:intergenic
GTGAGTCTTAAAATGGAGAC+AGG 0.552942 tig0026448:-56942 None:intergenic
GTCCTCCTCACCACTCTACC+AGG 0.555073 tig0026448:-55882 None:intergenic
TCCATGTAAGCGATTCTGGT+GGG 0.555397 tig0026448:-56671 None:intergenic
GACACAATTCATAAATACTT+AGG 0.556487 tig0026448:-58038 None:intergenic
CCCCTCTTATCTTTCATCAA+CGG 0.558108 tig0026448:-55684 None:intergenic
AGGCTCTTCAGGACGGCCAG+TGG 0.567494 tig0026448:-56291 None:intergenic
TCCGTTGATGAAAGATAAGA+GGG 0.567847 tig0026448:+55683 Msa1429180:five_prime_UTR
GCGGAGACATACAACCTACT+TGG 0.567860 tig0026448:+57555 Msa1429180:CDS
AATATCTGATTGTTTCGACT+GGG 0.571429 tig0026448:-57664 None:intergenic
TACATTGTGTGAGAGGCTTG+CGG 0.572162 tig0026448:+56893 Msa1429180:CDS
AATCGCTTACATGGATACTC+AGG 0.576431 tig0026448:+56679 Msa1429180:CDS
CATTTGCTGGTCCTCGTGCG+TGG 0.576997 tig0026448:+56853 Msa1429180:CDS
GGGAAGGCAGATTGTTCGGA+GGG 0.578906 tig0026448:+56109 Msa1429180:CDS
AGGGCGGTGAATCTTGGACC+AGG 0.579063 tig0026448:+56035 Msa1429180:CDS
AGGTGATTACATTGTGTGAG+AGG 0.579608 tig0026448:+56886 Msa1429180:CDS
ACTCTACCAGGTGTGGCTGT+TGG 0.582170 tig0026448:-55870 None:intergenic
CTTTGGTATCGACACCAAGT+AGG 0.582966 tig0026448:-57569 None:intergenic
TGGACGAAGGATACGACGTC+CGG 0.585255 tig0026448:+56135 Msa1429180:CDS
AACAGCCACACCTGGTAGAG+TGG 0.585658 tig0026448:+55872 Msa1429180:CDS
AAAGATAAGAGGGGTGCGGT+AGG 0.586869 tig0026448:+55693 Msa1429180:five_prime_UTR
CCTCACCACTCTACCAGGTG+TGG 0.597480 tig0026448:-55877 None:intergenic
TGAAAATGGCGACCCTGATG+AGG 0.599647 tig0026448:+55844 Msa1429180:CDS
ATCAAAACAGTTGATTGGGA+AGG 0.599943 tig0026448:+56314 Msa1429180:CDS
AGGTTACCAACAGCCACACC+TGG 0.599991 tig0026448:+55864 Msa1429180:CDS
AGTGGTGAGGAGGACGAGAG+AGG 0.604065 tig0026448:+55890 Msa1429180:CDS
CCAACAAGTATACTTGTGGT+TGG 0.608034 tig0026448:+56071 Msa1429180:CDS
TTGCATACGAGGTAATGTTG+TGG 0.612997 tig0026448:+57710 Msa1429180:three_prime_UTR
TTGTATTCATCCAAACACAT+TGG 0.619267 tig0026448:+57820 Msa1429180:three_prime_UTR
ATCCATGTAAGCGATTCTGG+TGG 0.627734 tig0026448:-56672 None:intergenic
CAATACTTGATCTCCATGAG+TGG 0.630169 tig0026448:-56428 None:intergenic
TGGGAAGGCAGATTGTTCGG+AGG 0.630372 tig0026448:+56108 Msa1429180:CDS
GTTCGGAGGGCACTGGACGA+AGG 0.631129 tig0026448:+56122 Msa1429180:CDS
TGTGATTGAGTCCAGAATCA+CGG 0.632628 tig0026448:-56466 None:intergenic
TAGGCCAACAAGTATACTTG+TGG 0.636061 tig0026448:+56067 Msa1429180:CDS
GGCTGTTGGTAACCTCATCA+GGG 0.639067 tig0026448:-55856 None:intergenic
GATGAAAGATAAGAGGGGTG+CGG 0.639836 tig0026448:+55689 Msa1429180:five_prime_UTR
GTATTGGATTGAATGAACGA+AGG 0.645170 tig0026448:+55774 Msa1429180:five_prime_UTR
ATGATTTGTAATTGCATACG+AGG 0.645440 tig0026448:+57699 Msa1429180:three_prime_UTR
GCCTCGGCCTTACCAGACAC+CGG 0.648299 tig0026448:-56154 None:intergenic
TAGCAATAGCAATTCAGAGA+GGG 0.651939 tig0026448:+56016 Msa1429180:CDS
AATACTTGATCTCCATGAGT+GGG 0.653716 tig0026448:-56427 None:intergenic
GGGCGGTGAATCTTGGACCA+GGG 0.653844 tig0026448:+56036 Msa1429180:CDS
CAATAGCAATTCAGAGAGGG+CGG 0.659474 tig0026448:+56019 Msa1429180:CDS
CACCTGGTAGAGTGGTGAGG+AGG 0.664243 tig0026448:+55880 Msa1429180:CDS
GTGGCAAAATAATGATCAGG+AGG 0.665461 tig0026448:+55733 Msa1429180:five_prime_UTR
CCACACCTGGTAGAGTGGTG+AGG 0.669050 tig0026448:+55877 Msa1429180:CDS
CTGCCTTCCCAAAGTCCCCG+TGG 0.669955 tig0026448:-56096 None:intergenic
TCGTGCGTGGACTACCCAAG+AGG 0.692160 tig0026448:+56866 Msa1429180:CDS
GGTAGCAGTAAAAGTAGACG+TGG 0.693126 tig0026448:+55714 Msa1429180:five_prime_UTR
TAACTGCGACAAACATCCTG+AGG 0.699487 tig0026448:+56403 Msa1429180:CDS
TCTTGGGTAGTCCACGCACG+AGG 0.707865 tig0026448:-56864 None:intergenic
CAGTTGCTCCCCAATCACGA+AGG 0.720142 tig0026448:-56193 None:intergenic
ATAGCAATAGCAATTCAGAG+AGG 0.747554 tig0026448:+56015 Msa1429180:CDS
TACTTGTGGTTGGAGCCACG+GGG 0.774798 tig0026448:+56081 Msa1429180:CDS
CCGTTGATGAAAGATAAGAG+GGG 0.799666 tig0026448:+55684 Msa1429180:five_prime_UTR
GATTGAGTCCAGAATCACGG+AGG 0.804340 tig0026448:-56463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTCTTTCATTTTAA+TGG + tig0026448:57452-57471 Msa1429180:intron 15.0%
!! AATAAAAAAACAATATACAC+CGG - tig0026448:57767-57786 None:intergenic 15.0%
!! TTATTTCCGAAAAATGAAAA+TGG + tig0026448:55830-55849 Msa1429180:exon 20.0%
!! TTACGAAATGAAAAAATCAA+CGG + tig0026448:56819-56838 Msa1429180:CDS 20.0%
!! CAACAAGTATTAATGAATTT+AGG - tig0026448:57055-57074 None:intergenic 20.0%
!!! TCAACTATTTTTTGTTACAT+TGG + tig0026448:57131-57150 Msa1429180:intron 20.0%
!! AGCAATCTAAAAATAAGTAA+GGG - tig0026448:57157-57176 None:intergenic 20.0%
!! AAGCAATCTAAAAATAAGTA+AGG - tig0026448:57158-57177 None:intergenic 20.0%
!!! TTATTTTTAGATTGCTTGAA+TGG + tig0026448:57161-57180 Msa1429180:intron 20.0%
!! CTCTAATGTAATTATATCTT+TGG - tig0026448:57589-57608 None:intergenic 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG + tig0026448:57774-57793 Msa1429180:three_prime_UTR 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG + tig0026448:57775-57794 Msa1429180:three_prime_UTR 20.0%
!! TATAAATTAACCAATGTGTT+TGG - tig0026448:57833-57852 None:intergenic 20.0%
! ATGAATGAAGTGATTGATTA+AGG - tig0026448:56749-56768 None:intergenic 25.0%
!!! GTTGATTTTTTCATTTCGTA+AGG - tig0026448:56820-56839 None:intergenic 25.0%
!! TTCATTAATACTTGTTGCAT+TGG + tig0026448:57058-57077 Msa1429180:intron 25.0%
! AAAAAGAAGAAGAAGGATTT+GGG - tig0026448:57091-57110 None:intergenic 25.0%
! AAAAAAGAAGAAGAAGGATT+TGG - tig0026448:57092-57111 None:intergenic 25.0%
! CATACAAAAAAAGAAGAAGA+AGG - tig0026448:57098-57117 None:intergenic 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG - tig0026448:57377-57396 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG - tig0026448:57381-57400 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG - tig0026448:57441-57460 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG + tig0026448:57455-57474 Msa1429180:intron 25.0%
! GACACAATTCATAAATACTT+AGG - tig0026448:58041-58060 None:intergenic 25.0%
! TATTTATGAATTGTGTCAGT+TGG + tig0026448:58044-58063 Msa1429180:three_prime_UTR 25.0%
AACTCAACAAAATGAGTACT+AGG - tig0026448:55933-55952 None:intergenic 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG + tig0026448:55939-55958 Msa1429180:CDS 30.0%
TATTCAATGTGCTAAAGCAA+TGG + tig0026448:56349-56368 Msa1429180:CDS 30.0%
ATTCAATGTGCTAAAGCAAT+GGG + tig0026448:56350-56369 Msa1429180:CDS 30.0%
ACAATTCATAATTCCAATGC+AGG + tig0026448:56586-56605 Msa1429180:intron 30.0%
CAATTCATAATTCCAATGCA+GGG + tig0026448:56587-56606 Msa1429180:intron 30.0%
! ACAGATTTTTCTTCGAGAAT+AGG - tig0026448:56635-56654 None:intergenic 30.0%
TTCTCGAAGAAAAATCTGTT+TGG + tig0026448:56636-56655 Msa1429180:CDS 30.0%
TCTCGAAGAAAAATCTGTTT+GGG + tig0026448:56637-56656 Msa1429180:CDS 30.0%
TGCATTACTACATTTCCATT+GGG + tig0026448:57231-57250 Msa1429180:intron 30.0%
GGAATAAACCTGTAAGAATA+GGG - tig0026448:57343-57362 None:intergenic 30.0%
TGGAATAAACCTGTAAGAAT+AGG - tig0026448:57344-57363 None:intergenic 30.0%
ACAGGTTTATTCCATTCTAT+TGG + tig0026448:57350-57369 Msa1429180:intron 30.0%
CATGCCTATAGTTGATTATA+CGG + tig0026448:57483-57502 Msa1429180:intron 30.0%
ATGCCTATAGTTGATTATAC+GGG + tig0026448:57484-57503 Msa1429180:intron 30.0%
TTTCCCGTATAATCAACTAT+AGG - tig0026448:57490-57509 None:intergenic 30.0%
ATTATACGGGAAATATTTGC+AGG + tig0026448:57497-57516 Msa1429180:intron 30.0%
!! TACATTAGAGAAGTATTTGC+AGG + tig0026448:57599-57618 Msa1429180:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG + tig0026448:57632-57651 Msa1429180:CDS 30.0%
AATATCTGATTGTTTCGACT+GGG - tig0026448:57667-57686 None:intergenic 30.0%
AAATATCTGATTGTTTCGAC+TGG - tig0026448:57668-57687 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG + tig0026448:57699-57718 Msa1429180:three_prime_UTR 30.0%
TTATTCTTAAATACGCTTGC+CGG + tig0026448:57745-57764 Msa1429180:three_prime_UTR 30.0%
TTGTATTCATCCAAACACAT+TGG + tig0026448:57820-57839 Msa1429180:three_prime_UTR 30.0%
! ATCCGTTGATGAAAGATAAG+AGG + tig0026448:55682-55701 Msa1429180:five_prime_UTR 35.0%
! TCCGTTGATGAAAGATAAGA+GGG + tig0026448:55683-55702 Msa1429180:five_prime_UTR 35.0%
! ATAATGATCAGGAGGAGTAT+TGG + tig0026448:55741-55760 Msa1429180:five_prime_UTR 35.0%
! TATTGGATTGGAAGGAGTAT+TGG + tig0026448:55758-55777 Msa1429180:five_prime_UTR 35.0%
GTATTGGATTGAATGAACGA+AGG + tig0026448:55774-55793 Msa1429180:five_prime_UTR 35.0%
TGAGTACTAGGATAAAGAAC+AGG - tig0026448:55921-55940 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG + tig0026448:55942-55961 Msa1429180:CDS 35.0%
TGGAAGAAGGATTATTAGAG+TGG + tig0026448:55962-55981 Msa1429180:CDS 35.0%
GGAAGAAGGATTATTAGAGT+GGG + tig0026448:55963-55982 Msa1429180:CDS 35.0%
ATAGCAATAGCAATTCAGAG+AGG + tig0026448:56015-56034 Msa1429180:CDS 35.0%
TAGCAATAGCAATTCAGAGA+GGG + tig0026448:56016-56035 Msa1429180:CDS 35.0%
ACTATTCCTGCTACATTAGT+TGG + tig0026448:56245-56264 Msa1429180:CDS 35.0%
AGCCTATCAAAACAGTTGAT+TGG + tig0026448:56309-56328 Msa1429180:CDS 35.0%
GCCTATCAAAACAGTTGATT+GGG + tig0026448:56310-56329 Msa1429180:CDS 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG - tig0026448:56314-56333 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG + tig0026448:56314-56333 Msa1429180:CDS 35.0%
AATACTTGATCTCCATGAGT+GGG - tig0026448:56430-56449 None:intergenic 35.0%
CTTGCATGAAACCACATAAA+CGG - tig0026448:56499-56518 None:intergenic 35.0%
CTCGAAGAAAAATCTGTTTG+GGG + tig0026448:56638-56657 Msa1429180:CDS 35.0%
GGTAAACTTCTTACATTTGC+TGG + tig0026448:56840-56859 Msa1429180:CDS 35.0%
ACACAATGTAATCACCTCTT+GGG - tig0026448:56883-56902 None:intergenic 35.0%
CTGTAGTTACATTAGCATCT+TGG - tig0026448:56920-56939 None:intergenic 35.0%
ATTTGTCCACTCAAAAAAGC+GGG - tig0026448:56979-56998 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG - tig0026448:56980-56999 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG + tig0026448:56995-57014 Msa1429180:CDS 35.0%
CTGCATTACTACATTTCCAT+TGG + tig0026448:57230-57249 Msa1429180:intron 35.0%
GCATTACTACATTTCCATTG+GGG + tig0026448:57232-57251 Msa1429180:intron 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG - tig0026448:57334-57353 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG + tig0026448:57332-57351 Msa1429180:intron 35.0%
ATATGCACTAGGAATCTGTT+TGG - tig0026448:57430-57449 None:intergenic 35.0%
CACTTCTCACTATGTACATT+TGG - tig0026448:57897-57916 None:intergenic 35.0%
CCCCTCTTATCTTTCATCAA+CGG - tig0026448:55687-55706 None:intergenic 40.0%
! CCGTTGATGAAAGATAAGAG+GGG + tig0026448:55684-55703 Msa1429180:five_prime_UTR 40.0%
GACGTGGCAAAATAATGATC+AGG + tig0026448:55730-55749 Msa1429180:five_prime_UTR 40.0%
GTGGCAAAATAATGATCAGG+AGG + tig0026448:55733-55752 Msa1429180:five_prime_UTR 40.0%
!! GGGTCGCCATTTTCATTTTT+CGG - tig0026448:55839-55858 None:intergenic 40.0%
! AGTTTTGCAAAGGTGGAAGA+AGG + tig0026448:55949-55968 Msa1429180:CDS 40.0%
! AGTATACTTGTTGGCCTAAC+AGG - tig0026448:56065-56084 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG + tig0026448:56067-56086 Msa1429180:CDS 40.0%
CCAACCACAAGTATACTTGT+TGG - tig0026448:56074-56093 None:intergenic 40.0%
CCAACAAGTATACTTGTGGT+TGG + tig0026448:56071-56090 Msa1429180:CDS 40.0%
AATGTAGCAGGAATAGTCTC+AGG - tig0026448:56242-56261 None:intergenic 40.0%
TGAACTCCAACTAATGTAGC+AGG - tig0026448:56254-56273 None:intergenic 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG - tig0026448:56301-56320 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG - tig0026448:56305-56324 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG - tig0026448:56399-56418 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG - tig0026448:56431-56450 None:intergenic 40.0%
TGTGATTGAGTCCAGAATCA+CGG - tig0026448:56469-56488 None:intergenic 40.0%
CACATTGTCATCCGTTTATG+TGG + tig0026448:56485-56504 Msa1429180:CDS 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG + tig0026448:56596-56615 Msa1429180:intron 40.0%
AGTATCCATGTAAGCGATTC+TGG - tig0026448:56678-56697 None:intergenic 40.0%
AATCGCTTACATGGATACTC+AGG + tig0026448:56679-56698 Msa1429180:CDS 40.0%
CTATATCCTAAAAGCAGCAG+AGG - tig0026448:56779-56798 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG - tig0026448:56884-56903 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG + tig0026448:56886-56905 Msa1429180:CDS 40.0%
GTGAGTCTTAAAATGGAGAC+AGG - tig0026448:56945-56964 None:intergenic 40.0%
CTGACGAGTGAGTCTTAAAA+TGG - tig0026448:56952-56971 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG + tig0026448:56970-56989 Msa1429180:CDS 40.0%
! TGACAGATTGGCATTTTCAG+AGG + tig0026448:57007-57026 Msa1429180:CDS 40.0%
! ACTACTAGAGCAGCTGATTT+GGG - tig0026448:57197-57216 None:intergenic 40.0%
TGGATTTGGGTAAAAGCCAA+TGG - tig0026448:57266-57285 None:intergenic 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG + tig0026448:57533-57552 Msa1429180:CDS 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG + tig0026448:57536-57555 Msa1429180:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG + tig0026448:57710-57729 Msa1429180:three_prime_UTR 40.0%
TGCATACGAGGTAATGTTGT+GGG + tig0026448:57711-57730 Msa1429180:three_prime_UTR 40.0%
TTCTTACGTGGGCTTACAAT+TGG + tig0026448:57786-57805 Msa1429180:three_prime_UTR 40.0%
! GTCTTTTAAGCATGCGATAC+AGG - tig0026448:58019-58038 None:intergenic 40.0%
GATGAAAGATAAGAGGGGTG+CGG + tig0026448:55689-55708 Msa1429180:five_prime_UTR 45.0%
GGTAGCAGTAAAAGTAGACG+TGG + tig0026448:55714-55733 Msa1429180:five_prime_UTR 45.0%
!! GATCAGGAGGAGTATTGGAT+TGG + tig0026448:55746-55765 Msa1429180:five_prime_UTR 45.0%
!! AGGAGGAGTATTGGATTGGA+AGG + tig0026448:55750-55769 Msa1429180:five_prime_UTR 45.0%
CAATAGCAATTCAGAGAGGG+CGG + tig0026448:56019-56038 Msa1429180:CDS 45.0%
TATACTTGTGGTTGGAGCCA+CGG + tig0026448:56079-56098 Msa1429180:CDS 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG + tig0026448:56105-56124 Msa1429180:CDS 45.0%
! AGCTGACTTCCTTCGTGATT+GGG + tig0026448:56184-56203 Msa1429180:CDS 45.0%
CAGGATGTTTGTCGCAGTTA+TGG - tig0026448:56403-56422 None:intergenic 45.0%
TAACTGCGACAAACATCCTG+AGG + tig0026448:56403-56422 Msa1429180:CDS 45.0%
CGAGAATAGGAACAGCATAC+TGG - tig0026448:56622-56641 None:intergenic 45.0%
TCCATGTAAGCGATTCTGGT+GGG - tig0026448:56674-56693 None:intergenic 45.0%
ATCCATGTAAGCGATTCTGG+TGG - tig0026448:56675-56694 None:intergenic 45.0%
TACATTGTGTGAGAGGCTTG+CGG + tig0026448:56893-56912 Msa1429180:CDS 45.0%
GACTACTAGAGCAGCTGATT+TGG - tig0026448:57198-57217 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG - tig0026448:57259-57278 None:intergenic 45.0%
! GCATCGACATGAGTGGATTT+GGG - tig0026448:57279-57298 None:intergenic 45.0%
! TGCATCGACATGAGTGGATT+TGG - tig0026448:57280-57299 None:intergenic 45.0%
! TTGATGTGCATCGACATGAG+TGG - tig0026448:57286-57305 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG - tig0026448:57364-57383 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG - tig0026448:57572-57591 None:intergenic 45.0%
!!! ATAAATAAATTTAAGATTAT+TGG + tig0026448:55658-55677 Msa1429180:five_prime_UTR 5.0%
! AAAGATAAGAGGGGTGCGGT+AGG + tig0026448:55693-55712 Msa1429180:five_prime_UTR 50.0%
TGAAAATGGCGACCCTGATG+AGG + tig0026448:55844-55863 Msa1429180:CDS 50.0%
!! GGCTGTTGGTAACCTCATCA+GGG - tig0026448:55859-55878 None:intergenic 50.0%
!! TGGCTGTTGGTAACCTCATC+AGG - tig0026448:55860-55879 None:intergenic 50.0%
ATACTTGTGGTTGGAGCCAC+GGG + tig0026448:56080-56099 Msa1429180:CDS 50.0%
CAATCACGAAGGAAGTCAGC+TGG - tig0026448:56185-56204 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG + tig0026448:56183-56202 Msa1429180:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG + tig0026448:56185-56204 Msa1429180:CDS 50.0%
! ACTGTTATTGACTGCGCCAC+TGG + tig0026448:56275-56294 Msa1429180:CDS 50.0%
GAGAACTTCCTCCGTGATTC+TGG + tig0026448:56455-56474 Msa1429180:CDS 50.0%
GATTGAGTCCAGAATCACGG+AGG - tig0026448:56466-56485 None:intergenic 50.0%
TGGCCAATAAGACCCTGCAT+TGG - tig0026448:56602-56621 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG - tig0026448:56672-56691 None:intergenic 50.0%
CCATGTAAGCGATTCTGGTG+GGG - tig0026448:56673-56692 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG + tig0026448:56770-56789 Msa1429180:intron 50.0%
ACATTGTGTGAGAGGCTTGC+GGG + tig0026448:56894-56913 Msa1429180:CDS 50.0%
CAATGGCAATAGGTCCCCAA+TGG - tig0026448:57249-57268 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG + tig0026448:57247-57266 Msa1429180:intron 50.0%
AGGTTGTATGTCTCCGCCAT+TGG - tig0026448:57552-57571 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG + tig0026448:57555-57574 Msa1429180:CDS 50.0%
AGGTTACCAACAGCCACACC+TGG + tig0026448:55864-55883 Msa1429180:CDS 55.0%
ACTCTACCAGGTGTGGCTGT+TGG - tig0026448:55873-55892 None:intergenic 55.0%
AACAGCCACACCTGGTAGAG+TGG + tig0026448:55872-55891 Msa1429180:CDS 55.0%
TCAGAGAGGGCGGTGAATCT+TGG + tig0026448:56029-56048 Msa1429180:CDS 55.0%
TTGGACCAGGGACACCTGTT+AGG + tig0026448:56048-56067 Msa1429180:CDS 55.0%
TACTTGTGGTTGGAGCCACG+GGG + tig0026448:56081-56100 Msa1429180:CDS 55.0%
TGGGAAGGCAGATTGTTCGG+AGG + tig0026448:56108-56127 Msa1429180:CDS 55.0%
GGGAAGGCAGATTGTTCGGA+GGG + tig0026448:56109-56128 Msa1429180:CDS 55.0%
TGGACGAAGGATACGACGTC+CGG + tig0026448:56135-56154 Msa1429180:CDS 55.0%
CAGTTGCTCCCCAATCACGA+AGG - tig0026448:56196-56215 None:intergenic 55.0%
ACATCCTGAGGTCCCACTCA+TGG + tig0026448:56415-56434 Msa1429180:CDS 55.0%
ATCTCCATGAGTGGGACCTC+AGG - tig0026448:56422-56441 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG + tig0026448:56670-56689 Msa1429180:CDS 55.0%
CCTCACCACTCTACCAGGTG+TGG - tig0026448:55880-55899 None:intergenic 60.0%
CCACACCTGGTAGAGTGGTG+AGG + tig0026448:55877-55896 Msa1429180:CDS 60.0%
CACCTGGTAGAGTGGTGAGG+AGG + tig0026448:55880-55899 Msa1429180:CDS 60.0%
GTCCTCCTCACCACTCTACC+AGG - tig0026448:55885-55904 None:intergenic 60.0%
AGTGGTGAGGAGGACGAGAG+AGG + tig0026448:55890-55909 Msa1429180:CDS 60.0%
AGGGCGGTGAATCTTGGACC+AGG + tig0026448:56035-56054 Msa1429180:CDS 60.0%
GGGCGGTGAATCTTGGACCA+GGG + tig0026448:56036-56055 Msa1429180:CDS 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG - tig0026448:56056-56075 None:intergenic 60.0%
GTTGGAGCCACGGGGACTTT+GGG + tig0026448:56089-56108 Msa1429180:CDS 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG + tig0026448:56115-56134 Msa1429180:CDS 60.0%
AGGATACGACGTCCGGTGTC+TGG + tig0026448:56142-56161 Msa1429180:CDS 60.0%
ACGACGTCCGGTGTCTGGTA+AGG + tig0026448:56147-56166 Msa1429180:CDS 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG - tig0026448:56173-56192 None:intergenic 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG - tig0026448:56179-56198 None:intergenic 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG + tig0026448:56853-56872 Msa1429180:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG - tig0026448:56867-56886 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG + tig0026448:56866-56885 Msa1429180:CDS 60.0%
GGTTGGAGCCACGGGGACTT+TGG + tig0026448:56088-56107 Msa1429180:CDS 65.0%
! GAGCCACGGGGACTTTGGGA+AGG + tig0026448:56093-56112 Msa1429180:CDS 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG - tig0026448:56099-56118 None:intergenic 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG + tig0026448:56122-56141 Msa1429180:CDS 65.0%
TCCGGTGTCTGGTAAGGCCG+AGG + tig0026448:56153-56172 Msa1429180:CDS 65.0%
GCCTCGGCCTTACCAGACAC+CGG - tig0026448:56157-56176 None:intergenic 65.0%
AGGCTCTTCAGGACGGCCAG+TGG - tig0026448:56294-56313 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0026448 gene 55651 58130 55651 ID=Msa1429180;Name=Msa1429180
tig0026448 mRNA 55651 58130 55651 ID=Msa1429180-mRNA-1;Parent=Msa1429180;Name=Msa1429180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=192|1|1|1|1|1|4|435|393
tig0026448 exon 55651 56517 55651 ID=Msa1429180-mRNA-1:exon:6354;Parent=Msa1429180-mRNA-1
tig0026448 exon 56608 56700 56608 ID=Msa1429180-mRNA-1:exon:6355;Parent=Msa1429180-mRNA-1
tig0026448 exon 56792 57028 56792 ID=Msa1429180-mRNA-1:exon:6356;Parent=Msa1429180-mRNA-1
tig0026448 exon 57519 58130 57519 ID=Msa1429180-mRNA-1:exon:6357;Parent=Msa1429180-mRNA-1
tig0026448 five_prime_UTR 55651 55842 55651 ID=Msa1429180-mRNA-1:five_prime_utr;Parent=Msa1429180-mRNA-1
tig0026448 CDS 55843 56517 55843 ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448 CDS 56608 56700 56608 ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448 CDS 56792 57028 56792 ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448 CDS 57519 57695 57519 ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448 three_prime_UTR 57696 58130 57696 ID=Msa1429180-mRNA-1:three_prime_utr;Parent=Msa1429180-mRNA-1
Gene Sequence

>Msa1429180

ATGAAAATGGCGACCCTGATGAGGTTACCAACAGCCACACCTGGTAGAGTGGTGAGGAGGACGAGAGAGGCATTTCCTGTTCTTTATCCTAGTACTCATTTTGTTGAGTTTTGCAAAGGTGGAAGAAGGATTATTAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATAGCAATAGCAATTCAGAGAGGGCGGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGTGTCTGGTAAGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGACTGCGCCACTGGCCGTCCTGAAGAGCCTATCAAAACAGTTGATTGGGAAGGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCTGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCACATTGTCATCCGTTTATGTGGTTTCATGCAAGGTCTTATTGGCCAGTATGCTGTTCCTATTCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAACGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCATTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>Msa1429180

MKMATLMRLPTATPGRVVRRTREAFPVLYPSTHFVEFCKGGRRIIRVGVKCNINSNSNSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSILRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF*