AlfalfaGEDB | Msa1429180

M. sativa cultivar zhongmu-4 / Msa1429180

KEGG: -
GO: -
PFAM: PF05368.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429180	XP_003604095.2	94.514	401	6	3	1	393	1	393	0.0	764

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429180	sp\|O65502\|HC244_ARATH	93.051	331	23	0	63	393	65	395	0.0	650

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429180	G7J9A2	94.514	401	6	3	1	393	1	393	0.0	764

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1429180	0.858032	1.088415e-62	-8.615850e-47
Msa0000610	Msa1429180	0.809036	2.307355e-50	-8.615850e-47
Msa0000800	Msa1429180	-0.800435	1.443406e-48	-8.615850e-47
Msa0001040	Msa1429180	0.823696	1.205239e-53	-8.615850e-47
Msa0001510	Msa1429180	0.950972	5.433176e-109	-8.615850e-47
Msa0001540	Msa1429180	0.859134	5.104401e-63	-8.615850e-47
Msa0002060	Msa1429180	0.831909	1.277423e-55	-8.615850e-47
Msa0002110	Msa1429180	0.883392	4.665167e-71	-8.615850e-47
Msa0002690	Msa1429180	0.938782	3.807425e-99	-8.615850e-47
Msa0002700	Msa1429180	0.931499	3.448749e-94	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429180	MtrunA17_Chr3g0146001	94.514	401	6	3	1	393	1	393	0.0	764

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429180	AT4G35250.1	93.051	331	23	0	63	393	65	395	0.0	650

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Find 128 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAAGAGGGGTGCGGT+AGG	0.586869	tig0026448:+55693	Msa1429180:five_prime_UTR
AAATATCTGATTGTTTCGAC+TGG	0.443973	tig0026448:-57665	None:intergenic
AAATGATGTTGCTGACAGAT+TGG	0.529217	tig0026448:+56995	Msa1429180:CDS
AACAGCCACACCTGGTAGAG+TGG	0.585658	tig0026448:+55872	Msa1429180:CDS
AACTCAACAAAATGAGTACT+AGG	0.522968	tig0026448:-55930	None:intergenic
AAGTCAGCTGGAGCAGGCCT+CGG	0.491663	tig0026448:-56170	None:intergenic
AATACTTGATCTCCATGAGT+GGG	0.653716	tig0026448:-56427	None:intergenic
AATATCTGATTGTTTCGACT+GGG	0.571429	tig0026448:-57664	None:intergenic
AATCGCTTACATGGATACTC+AGG	0.576431	tig0026448:+56679	Msa1429180:CDS
AATGTAGCAGGAATAGTCTC+AGG	0.539300	tig0026448:-56239	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCAACAAAATGAGTACT+AGG	-	tig0026448:55933-55952	None:intergenic	30.0%
TATTCAATGTGCTAAAGCAA+TGG	+	tig0026448:56349-56368	Msa1429180:CDS	30.0%
ATTCAATGTGCTAAAGCAAT+GGG	+	tig0026448:56350-56369	Msa1429180:CDS	30.0%
ACAATTCATAATTCCAATGC+AGG	+	tig0026448:56586-56605	Msa1429180:intron	30.0%
CAATTCATAATTCCAATGCA+GGG	+	tig0026448:56587-56606	Msa1429180:intron	30.0%
TTCTCGAAGAAAAATCTGTT+TGG	+	tig0026448:56636-56655	Msa1429180:CDS	30.0%
TCTCGAAGAAAAATCTGTTT+GGG	+	tig0026448:56637-56656	Msa1429180:CDS	30.0%
TGCATTACTACATTTCCATT+GGG	+	tig0026448:57231-57250	Msa1429180:intron	30.0%
GGAATAAACCTGTAAGAATA+GGG	-	tig0026448:57343-57362	None:intergenic	30.0%
TGGAATAAACCTGTAAGAAT+AGG	-	tig0026448:57344-57363	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026448	gene	55651	58130	55651	ID=Msa1429180;Name=Msa1429180
tig0026448	mRNA	55651	58130	55651	ID=Msa1429180-mRNA-1;Parent=Msa1429180;Name=Msa1429180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=192\|1\|1\|1\|1\|1\|4\|435\|393
tig0026448	exon	55651	56517	55651	ID=Msa1429180-mRNA-1:exon:6354;Parent=Msa1429180-mRNA-1
tig0026448	exon	56608	56700	56608	ID=Msa1429180-mRNA-1:exon:6355;Parent=Msa1429180-mRNA-1
tig0026448	exon	56792	57028	56792	ID=Msa1429180-mRNA-1:exon:6356;Parent=Msa1429180-mRNA-1
tig0026448	exon	57519	58130	57519	ID=Msa1429180-mRNA-1:exon:6357;Parent=Msa1429180-mRNA-1
tig0026448	five_prime_UTR	55651	55842	55651	ID=Msa1429180-mRNA-1:five_prime_utr;Parent=Msa1429180-mRNA-1
tig0026448	CDS	55843	56517	55843	ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448	CDS	56608	56700	56608	ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448	CDS	56792	57028	56792	ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448	CDS	57519	57695	57519	ID=Msa1429180-mRNA-1:cds;Parent=Msa1429180-mRNA-1
tig0026448	three_prime_UTR	57696	58130	57696	ID=Msa1429180-mRNA-1:three_prime_utr;Parent=Msa1429180-mRNA-1

Gene Sequence

>Msa1429180

ATGAAAATGGCGACCCTGATGAGGTTACCAACAGCCACACCTGGTAGAGTGGTGAGGAGGACGAGAGAGGCATTTCCTGTTCTTTATCCTAGTACTCATTTTGTTGAGTTTTGCAAAGGTGGAAGAAGGATTATTAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATAGCAATAGCAATTCAGAGAGGGCGGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGTGTCTGGTAAGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGACTGCGCCACTGGCCGTCCTGAAGAGCCTATCAAAACAGTTGATTGGGAAGGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCTGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCACATTGTCATCCGTTTATGTGGTTTCATGCAAGGTCTTATTGGCCAGTATGCTGTTCCTATTCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAACGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCATTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>Msa1429180

MKMATLMRLPTATPGRVVRRTREAFPVLYPSTHFVEFCKGGRRIIRVGVKCNINSNSNSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSILRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF*