AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0113910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113910 MtrunA17_Chr1g0173181 97.137 524 5 2 1 524 1 514 0.0 1050
Msa0113910 MtrunA17_Chr5g0407541 47.684 367 183 4 31 391 7 370 7.60e-107 324
Msa0113910 MtrunA17_Chr3g0125821 35.484 93 58 1 432 524 83 173 4.61e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113910 AT2G41680.1 78.137 526 105 4 5 523 6 528 0.0 848
Msa0113910 AT2G17420.1 52.244 312 143 3 81 386 61 372 2.84e-113 341
Msa0113910 AT2G17420.2 51.827 301 139 3 81 375 61 361 1.25e-107 326
Msa0113910 AT4G35460.1 51.603 312 145 3 81 386 53 364 2.60e-103 315

Find 160 sgRNAs with CRISPR-Local

Find 520 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTGCTTCTGCTATTTC+TGG 0.025232 1_3:+30068407 None:intergenic
TACCAAATGGGTGGTGTTCC+TGG 0.167134 1_3:-30074773 Msa0113910:CDS
TTCTTAACCTCTTCATGTTT+TGG 0.188984 1_3:+30070110 None:intergenic
TCAAAATTAATGTAAGAATT+TGG 0.196532 1_3:-30067675 Msa0113910:three_prime_UTR
CCTCTCAACAGTTGAGTATT+TGG 0.205655 1_3:+30072348 None:intergenic
TCACTGCTTTGGACAGTAAA+AGG 0.234446 1_3:+30074498 None:intergenic
TGAACTTGCTGAATTCAAAT+AGG 0.239962 1_3:+30067816 None:intergenic
GTTGAAAATGTGGTAATTAT+AGG 0.272616 1_3:-30074869 Msa0113910:CDS
TACCCAGAGAAGATGAATTT+TGG 0.278431 1_3:-30074035 Msa0113910:CDS
GAACACTACGGGTTTCAAAT+TGG 0.296172 1_3:+30074802 None:intergenic
GAACTTGCTGAATTCAAATA+GGG 0.312961 1_3:+30067817 None:intergenic
GGATTTCCAGACGGGATTAC+TGG 0.317096 1_3:-30074710 Msa0113910:CDS
ACTGAAGTAGAGAACTTTCC+AGG 0.334671 1_3:-30074731 Msa0113910:CDS
GCTCCAAAATTCATCTTCTC+TGG 0.339217 1_3:+30074032 None:intergenic
TCACCTTACGTTCACTGCTT+TGG 0.363162 1_3:+30074487 None:intergenic
AACTGCGGCGGGACAGAATC+TGG 0.366101 1_3:-30067586 Msa0113910:three_prime_UTR
GCCGTAACTGCTGCTGGATC+TGG 0.371625 1_3:-30070941 Msa0113910:CDS
CAAATTCTTGCTGTCGTTGG+AGG 0.382585 1_3:-30073955 Msa0113910:CDS
AACTACCAGCTTCTCGTTGA+AGG 0.393831 1_3:-30067794 Msa0113910:three_prime_UTR
CTTCTAAAGCCATGCAAGAT+AGG 0.400979 1_3:-30073846 Msa0113910:intron
GCGACGGCAAGCTGAACGTT+GGG 0.406078 1_3:-30074571 Msa0113910:CDS
GATTACTGGACCTGATCTAA+TGG 0.408689 1_3:-30074696 Msa0113910:CDS
CATTACACTTACAAAGCATA+AGG 0.410956 1_3:-30070051 Msa0113910:CDS
TTGAAGTGCACAGTGACATT+TGG 0.412823 1_3:+30072498 None:intergenic
CCCCAGGAACACCACCCATT+TGG 0.425269 1_3:+30074771 None:intergenic
CGAAAATGCTGATCAGTTCA+AGG 0.425362 1_3:+30067908 None:intergenic
ACCAAATGGGTGGTGTTCCT+GGG 0.430236 1_3:-30074772 Msa0113910:CDS
TATTTGCCTCGATGAATTCT+CGG 0.433025 1_3:+30068036 None:intergenic
AGGCAAGCCGTAACTGCTGC+TGG 0.440096 1_3:-30070947 Msa0113910:CDS
TGGAGCATCACCTCTCTTCA+AGG 0.440116 1_3:-30073980 Msa0113910:CDS
AGAATGGTTACTGCGAAGAT+AGG 0.441679 1_3:-30076256 Msa0113910:CDS
TCCTCCTCCGTAGCCTCACC+AGG 0.445650 1_3:-30076052 Msa0113910:intron
GTCTACTGGTGATGATTGTA+TGG 0.454108 1_3:-30076289 Msa0113910:five_prime_UTR
CATTTAATGGGTGAGTCTAC+TGG 0.455824 1_3:-30076303 None:intergenic
GTAATCCCGTCTGGAAATCC+TGG 0.459014 1_3:+30074713 None:intergenic
ATGAGAAGGTGAGGAGAGAG+AGG 0.459976 1_3:+30076177 None:intergenic
TAACATACCTTACTGAGGAT+TGG 0.461867 1_3:+30069793 None:intergenic
TTAGTAAGAAAGCTTGATAG+TGG 0.463519 1_3:-30072423 Msa0113910:CDS
CAGTGGCAATAATTACAGTA+TGG 0.463771 1_3:+30074082 None:intergenic
AGCAGAAGCAGCTGGAATCA+TGG 0.468143 1_3:-30068399 Msa0113910:CDS
AATGTGGTAATTATAGGTTC+AGG 0.468501 1_3:-30074863 Msa0113910:CDS
TGGCTTTAGAAGCCCTTAGT+TGG 0.469141 1_3:+30073857 None:intergenic
TCCAGATCCAGCAGCAGTTA+CGG 0.469420 1_3:+30070940 None:intergenic
CAAGTTGAACTTGACCAGTC+TGG 0.471614 1_3:-30072324 Msa0113910:CDS
CCAAATGGGTGGTGTTCCTG+GGG 0.472359 1_3:-30074771 Msa0113910:CDS
AGTGTTCGAGGGTTACCAAA+TGG 0.478208 1_3:-30074786 Msa0113910:CDS
ACAGTTGAGTATTTGGTGAA+TGG 0.478887 1_3:+30072355 None:intergenic
GTTGAAGGTGTATTTGCTGC+TGG 0.479454 1_3:-30072264 Msa0113910:CDS
GTGTTCGAGGGTTACCAAAT+GGG 0.480718 1_3:-30074785 Msa0113910:CDS
AAATTCTTGCTGTCGTTGGA+GGG 0.482006 1_3:-30073954 Msa0113910:CDS
TAGTAAGAAAGCTTGATAGT+GGG 0.482102 1_3:-30072422 Msa0113910:CDS
ATTACACTTACAAAGCATAA+GGG 0.483261 1_3:-30070050 Msa0113910:CDS
TATCTAGTTAACGTGAGATC+AGG 0.486126 1_3:+30067619 None:intergenic
TTGTACGTCGAGACCAACTA+AGG 0.488217 1_3:-30073870 Msa0113910:CDS
ATTCTTGCTGTCGTTGGAGG+GGG 0.488532 1_3:-30073952 Msa0113910:CDS
GTATGGTCTGTAAGAAAGAA+TGG 0.492276 1_3:-30076272 Msa0113910:exon
ATTTCACCTTGGATGATGAC+AGG 0.493423 1_3:+30067748 None:intergenic
TGGTAACCCTCGAACACTAC+GGG 0.495666 1_3:+30074791 None:intergenic
TAATACCTGTCCATTAGATC+AGG 0.500326 1_3:+30074686 None:intergenic
TTACGGCTTGCCTCCACTCA+TGG 0.500760 1_3:+30070957 None:intergenic
GGAGGAAGAAGTGTCGGAAG+AGG 0.501847 1_3:+30076069 None:intergenic
GGTCAAATTCTTGCTGTCGT+TGG 0.503789 1_3:-30073958 Msa0113910:CDS
CAGACTGGTCAAGTTCAACT+TGG 0.504331 1_3:+30072325 None:intergenic
TTTGAAACCCGTAGTGTTCG+AGG 0.508084 1_3:-30074798 Msa0113910:CDS
AATTGACAGCGCTATTCAGC+AGG 0.510453 1_3:+30067943 None:intergenic
TCAGGTCCAGTAATCCCGTC+TGG 0.510618 1_3:+30074704 None:intergenic
AGTAAGAAAGCTTGATAGTG+GGG 0.510964 1_3:-30072421 Msa0113910:CDS
GCAGAAGCAGCTGGAATCAT+GGG 0.511150 1_3:-30068398 Msa0113910:CDS
TGAGGAGAGAGAGGAAGCAG+TGG 0.512318 1_3:+30076186 None:intergenic
TGATGAACCTGGTGAGGCTA+CGG 0.513926 1_3:+30076045 None:intergenic
TATAATACACATATAAGCCT+TGG 0.515950 1_3:+30069853 None:intergenic
ACTTTCCAGGATTTCCAGAC+GGG 0.517680 1_3:-30074718 Msa0113910:CDS
AATTCTTGCTGTCGTTGGAG+GGG 0.520948 1_3:-30073953 Msa0113910:CDS
CTCCAAAATTCATCTTCTCT+GGG 0.522044 1_3:+30074033 None:intergenic
TTGGTAACCCTCGAACACTA+CGG 0.523238 1_3:+30074790 None:intergenic
ACCTGGTGAGGCTACGGAGG+AGG 0.524573 1_3:+30076051 None:intergenic
AATACAAAAGGACAGATGTC+TGG 0.526372 1_3:-30072450 Msa0113910:CDS
AAAACATGAAGAGGTTAAGA+AGG 0.526385 1_3:-30070108 Msa0113910:CDS
GAGCAACTGCAAAACGACTT+AGG 0.527739 1_3:-30074059 Msa0113910:CDS
ATATAAGCCTTGGACTATCA+TGG 0.534266 1_3:+30069863 None:intergenic
CATTGCCTTCAACGAGAAGC+TGG 0.535798 1_3:+30067789 None:intergenic
ACTGCGAAGATAGGACTCTT+CGG 0.537342 1_3:-30076247 Msa0113910:CDS
AAGAAGTGTCGGAAGAGGCT+CGG 0.538210 1_3:+30076074 None:intergenic
CCAGAAATAGCAGAAGCAGC+TGG 0.539369 1_3:-30068407 Msa0113910:CDS
ATTGAAGCCAATCCTCAGTA+AGG 0.540059 1_3:-30069800 Msa0113910:intron
TCTTCTTATAGAGTTCCATC+AGG 0.540274 1_3:-30070873 Msa0113910:intron
ATTATAGGTTCAGGTCCTGC+AGG 0.542012 1_3:-30074854 Msa0113910:CDS
GATATTGTGAGCAATACAAA+AGG 0.548161 1_3:-30072462 Msa0113910:CDS
TGTCCAAAGCAGTGAACGTA+AGG 0.549292 1_3:-30074490 Msa0113910:intron
ATTGCTGCTGTGTATCCTGC+AGG 0.551544 1_3:+30074839 None:intergenic
TACGGAGGAGGAAGAAGTGT+CGG 0.554402 1_3:+30076063 None:intergenic
ATTTCCACTGTAACTGCGGC+GGG 0.555074 1_3:-30067597 Msa0113910:three_prime_UTR
ATTTGCTGCTGGAGATGTGC+AGG 0.558112 1_3:-30072253 Msa0113910:intron
TTAAGAAGGAATTAACAGAC+AGG 0.558919 1_3:-30070094 Msa0113910:CDS
AGTGCTTGTGCAATTTGTGA+TGG 0.559766 1_3:-30074000 Msa0113910:CDS
TCGGACACACCTATCTTGCA+TGG 0.562404 1_3:+30073837 None:intergenic
AGTCAGTGCTTGAGGCCAAA+GGG 0.565727 1_3:-30072395 Msa0113910:CDS
GAGAGGAAGCAGTGGTGACA+CGG 0.566619 1_3:+30076194 None:intergenic
TATGCCGTAGAATAGCCCTT+TGG 0.566889 1_3:+30072380 None:intergenic
CAAAATTGAATCACAGAACT+CGG 0.566958 1_3:+30067979 None:intergenic
TGGGGAGGAGTCAGTGCTTG+AGG 0.568768 1_3:-30072403 Msa0113910:CDS
GAGGCCAAAGGGCTATTCTA+CGG 0.570443 1_3:-30072384 Msa0113910:CDS
AACTTTCCAGGATTTCCAGA+CGG 0.572369 1_3:-30074719 Msa0113910:CDS
CTGGACCTGATCTAATGGAC+AGG 0.572406 1_3:-30074691 Msa0113910:intron
TGCGACGGCAAGCTGAACGT+TGG 0.574702 1_3:-30074572 Msa0113910:CDS
AGATGTTTCTACTGCAACAG+TGG 0.577210 1_3:-30067648 Msa0113910:three_prime_UTR
AAGAAAGCTTGATAGTGGGG+AGG 0.580489 1_3:-30072418 Msa0113910:CDS
TGACTAGTAAGTAGCCAGAC+TGG 0.583005 1_3:+30072310 None:intergenic
TTGAAACCCGTAGTGTTCGA+GGG 0.585198 1_3:-30074797 Msa0113910:CDS
ACTTACAAAGCATAAGGGGC+AGG 0.590481 1_3:-30070045 Msa0113910:intron
GTAACAGCCAAAACATGAAG+AGG 0.591993 1_3:-30070117 Msa0113910:intron
GAGTCAGTGCTTGAGGCCAA+AGG 0.592233 1_3:-30072396 Msa0113910:CDS
GGTGACACGGTGGTTGTGAG+TGG 0.593710 1_3:+30076207 None:intergenic
GGAGCATCACCTCTCTTCAA+GGG 0.594248 1_3:-30073979 Msa0113910:CDS
GAAACGATGATGAGAAGGTG+AGG 0.595275 1_3:+30076168 None:intergenic
AATTGTACCATGATAGTCCA+AGG 0.599012 1_3:-30069870 Msa0113910:CDS
AACAGACAGGGATGTTCAAG+CGG 0.600644 1_3:-30070081 Msa0113910:CDS
CATACTGTAATTATTGCCAC+TGG 0.600711 1_3:-30074081 Msa0113910:CDS
AGAATTTGACCCTTGAAGAG+AGG 0.605923 1_3:+30073970 None:intergenic
TATGATCAGTCATTTCACCT+TGG 0.606394 1_3:+30067737 None:intergenic
TTCTTTAACATACCTTACTG+AGG 0.607014 1_3:+30069788 None:intergenic
TCTACTTGTCTAGGATGCGA+CGG 0.607303 1_3:-30074587 Msa0113910:intron
ACAGACAGGGATGTTCAAGC+GGG 0.607683 1_3:-30070080 Msa0113910:CDS
TGTTCTCATAGGACCATGAG+TGG 0.609661 1_3:-30070970 Msa0113910:intron
GTGACACGGTGGTTGTGAGT+GGG 0.610611 1_3:+30076208 None:intergenic
CTGTCCCGCCGCAGTTACAG+TGG 0.617990 1_3:+30067593 None:intergenic
GAGAGATATCTCGTCAGCAG+TGG 0.622694 1_3:-30070896 Msa0113910:CDS
AAGTAATGATGAACCTGGTG+AGG 0.625517 1_3:+30076039 None:intergenic
TTACACTTACAAAGCATAAG+GGG 0.626930 1_3:-30070049 Msa0113910:CDS
AGGTAACGCAGTTGAAAATG+TGG 0.629242 1_3:-30074879 Msa0113910:CDS
TCACACCCTGTCATCATCCA+AGG 0.630893 1_3:-30067754 Msa0113910:three_prime_UTR
AAGATGAAACGATGATGAGA+AGG 0.634067 1_3:+30076163 None:intergenic
AGATATTTCCACTGTAACTG+CGG 0.634918 1_3:-30067601 Msa0113910:three_prime_UTR
ACACGGTGGTTGTGAGTGGG+AGG 0.635165 1_3:+30076211 None:intergenic
TGGCTACTTACTAGTCAAAG+AGG 0.637872 1_3:-30072304 Msa0113910:CDS
AACTTGCTGAATTCAAATAG+GGG 0.638356 1_3:+30067818 None:intergenic
CACCGACATGTGGTCCGTGT+CGG 0.640430 1_3:-30069825 Msa0113910:CDS
CCAAATACTCAACTGTTGAG+AGG 0.641648 1_3:-30072348 Msa0113910:CDS
TTTCACCTTGGATGATGACA+GGG 0.642361 1_3:+30067749 None:intergenic
CGACGGCAAGCTGAACGTTG+GGG 0.642828 1_3:-30074570 Msa0113910:CDS
TATTTCCACTGTAACTGCGG+CGG 0.644475 1_3:-30067598 Msa0113910:three_prime_UTR
GTTAACGTGAGATCAGGAAG+TGG 0.648420 1_3:+30067625 None:intergenic
TTCGAGGGTTACCAAATGGG+TGG 0.652902 1_3:-30074782 Msa0113910:CDS
AAGAACGAGAACGAAGAGAG+CGG 0.654263 1_3:+30076128 None:intergenic
GGCTACTTACTAGTCAAAGA+GGG 0.659261 1_3:-30072303 Msa0113910:CDS
AAAGGGCTATTCTACGGCAT+AGG 0.659759 1_3:-30072378 Msa0113910:CDS
GTCCGACACGGACCACATGT+CGG 0.665457 1_3:+30069823 None:intergenic
GCACTTCAATACAGAGACTG+TGG 0.669081 1_3:-30072484 Msa0113910:CDS
CAAATATAATGCTTCCTCTG+TGG 0.673525 1_3:+30073921 None:intergenic
CAAATGGGTGGTGTTCCTGG+GGG 0.675789 1_3:-30074770 Msa0113910:CDS
TGAACCTGGTGAGGCTACGG+AGG 0.676346 1_3:+30076048 None:intergenic
TTATACACGTCACCGACATG+TGG 0.678629 1_3:-30069835 Msa0113910:CDS
TGTACGTCGAGACCAACTAA+GGG 0.681720 1_3:-30073869 Msa0113910:CDS
TAAGAAGGAATTAACAGACA+GGG 0.686949 1_3:-30070093 Msa0113910:CDS
ATTGGCTTCAATGTCCGACA+CGG 0.691173 1_3:+30069811 None:intergenic
GCTTCTCGTTGAAGGCAATG+TGG 0.699182 1_3:-30067786 Msa0113910:three_prime_UTR
TCTCATAGGACCATGAGTGG+AGG 0.707926 1_3:-30070967 Msa0113910:intron
AGGAAGCAGTGGTGACACGG+TGG 0.735819 1_3:+30076197 None:intergenic
GAAGATAGGACTCTTCGGAG+TGG 0.740267 1_3:-30076242 Msa0113910:CDS
AGAATACCGAGAATTCATCG+AGG 0.782483 1_3:-30068042 Msa0113910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTACACATTAAAATAAAA+AGG + chr1_3:30070552-30070571 None:intergenic 10.0%
!! AAAAAATGTAAAATTAATAG+AGG - chr1_3:30072389-30072408 Msa0113910:CDS 10.0%
!!! AAAATTGATGTTTTATAAAT+TGG - chr1_3:30073134-30073153 Msa0113910:intron 10.0%
!!! TATTTGATAATAAAGTTAAT+TGG - chr1_3:30073200-30073219 Msa0113910:intron 10.0%
!! ATAATATTCATTAAGATATA+TGG - chr1_3:30075589-30075608 Msa0113910:intron 10.0%
!! ATTGAAATTTAGTTATATTG+AGG - chr1_3:30068046-30068065 Msa0113910:CDS 15.0%
!! TCATTAACTACAATAATTAA+GGG + chr1_3:30068488-30068507 None:intergenic 15.0%
!! AAGTTAAAATCTTGAAATTT+CGG + chr1_3:30069482-30069501 None:intergenic 15.0%
!!! ATTTTAACTTATAAACCAAT+TGG - chr1_3:30069492-30069511 Msa0113910:intron 15.0%
!! TGAATAATGAAAAAATATGA+AGG + chr1_3:30070402-30070421 None:intergenic 15.0%
!!! TTATGTCAATAATTTGTATT+TGG - chr1_3:30070626-30070645 Msa0113910:intron 15.0%
!! TACAACAAATATAATTAACT+TGG - chr1_3:30070653-30070672 Msa0113910:intron 15.0%
!! AAAAAAATTAACTGTTTAGT+TGG - chr1_3:30071790-30071809 Msa0113910:intron 15.0%
!!! TATAGTACATTATCTATTTT+AGG - chr1_3:30072075-30072094 Msa0113910:intron 15.0%
!! TTTGATTGAAAATTAATCAT+CGG + chr1_3:30072156-30072175 None:intergenic 15.0%
!! AATCAACAATAAATACTATA+AGG + chr1_3:30072365-30072384 None:intergenic 15.0%
!! AATATAAGTGCTTATAAAAT+TGG + chr1_3:30073051-30073070 None:intergenic 15.0%
!! AAAAACTTCATAAATTGTAT+AGG - chr1_3:30073166-30073185 Msa0113910:intron 15.0%
!! TCATTTAATGTTTGATTATT+TGG - chr1_3:30073925-30073944 Msa0113910:CDS 15.0%
!!! TTTTTTAATAATCTGACTTA+AGG + chr1_3:30074824-30074843 None:intergenic 15.0%
!! AGTCAGATTATTAAAAAAAA+TGG - chr1_3:30074826-30074845 Msa0113910:CDS 15.0%
!! TATATATGAGAATACATTAA+TGG - chr1_3:30075285-30075304 Msa0113910:intron 15.0%
!!! TTTTCTTTCAAAAAAATTCA+TGG - chr1_3:30075389-30075408 Msa0113910:intron 15.0%
!!! TTCAATTTTGTTTTCAATAT+TGG - chr1_3:30075913-30075932 Msa0113910:intron 15.0%
!! TCAAAATTAATGTAAGAATT+TGG - chr1_3:30076204-30076223 Msa0113910:CDS 15.0%
!!! TGAAATTGATTACTTTTGTT+TGG - chr1_3:30068142-30068161 Msa0113910:intron 20.0%
!! AGTATTTCATAAGAATTGAA+TGG - chr1_3:30068202-30068221 Msa0113910:intron 20.0%
!! CTCATTAACTACAATAATTA+AGG + chr1_3:30068489-30068508 None:intergenic 20.0%
!! CTTAATTATTGTAGTTAATG+AGG - chr1_3:30068487-30068506 Msa0113910:intron 20.0%
!!! TTGTTGTTATTATTATTGGT+TGG + chr1_3:30068578-30068597 None:intergenic 20.0%
!!! GTGACAATTATTTTGATATA+TGG + chr1_3:30068634-30068653 None:intergenic 20.0%
!!! TATCAAAATAATTGTCACTT+TGG - chr1_3:30068636-30068655 Msa0113910:intron 20.0%
!! TCTATCTATATTTCAATAAG+AGG + chr1_3:30068825-30068844 None:intergenic 20.0%
!! AGTTAAAATCTTGAAATTTC+GGG + chr1_3:30069481-30069500 None:intergenic 20.0%
!!! ATCTTCTTTGTGATATTTTA+TGG - chr1_3:30069523-30069542 Msa0113910:intron 20.0%
!!! ATTTGATAGTCAGTTTTATT+TGG - chr1_3:30069571-30069590 Msa0113910:intron 20.0%
!! TGTATATAAATCAAAAGTGA+TGG + chr1_3:30069673-30069692 None:intergenic 20.0%
!! CTTACAATTATAGATTGTAA+AGG + chr1_3:30070193-30070212 None:intergenic 20.0%
!!! TAGTTAGATCAATCTTTTAA+AGG - chr1_3:30070352-30070371 Msa0113910:intron 20.0%
!! AAAAAATGAAGCAAAAACAA+AGG + chr1_3:30070510-30070529 None:intergenic 20.0%
!! TTAATGTGTAATACATTTGA+TGG - chr1_3:30070559-30070578 Msa0113910:intron 20.0%
!! TAATGTGTAATACATTTGAT+GGG - chr1_3:30070560-30070579 Msa0113910:intron 20.0%
!!! TTTCTATTAACTGATTTGTT+AGG - chr1_3:30070595-30070614 Msa0113910:intron 20.0%
!! ATCAAACACATTATGTTATT+AGG + chr1_3:30070887-30070906 None:intergenic 20.0%
!! ATGTTATGTGATTATATATC+TGG - chr1_3:30071032-30071051 Msa0113910:intron 20.0%
!!! TAAAATTTTAGGTTAGCAAA+AGG - chr1_3:30071170-30071189 Msa0113910:intron 20.0%
!!! AAAATTTTAGGTTAGCAAAA+GGG - chr1_3:30071171-30071190 Msa0113910:intron 20.0%
!! TCTTGTAAAACAATTGATAA+CGG + chr1_3:30071868-30071887 None:intergenic 20.0%
!! ATTGTAGAATTGAAATTAGA+AGG + chr1_3:30071944-30071963 None:intergenic 20.0%
!!! GATATTATTCTAGAATATCT+TGG - chr1_3:30072123-30072142 Msa0113910:intron 20.0%
!! TGTATATTAGATTAATTCGT+AGG - chr1_3:30072177-30072196 Msa0113910:intron 20.0%
!! ATGCAATTAAAAATTCAAAG+AGG - chr1_3:30072439-30072458 Msa0113910:CDS 20.0%
!! TGCAATTAAAAATTCAAAGA+GGG - chr1_3:30072440-30072459 Msa0113910:CDS 20.0%
!! AGTCTATTTATCCTTAAATA+GGG - chr1_3:30072556-30072575 Msa0113910:intron 20.0%
!! ATTATATTGATCCCTATTTA+AGG + chr1_3:30072570-30072589 None:intergenic 20.0%
!! TTATCCTTATAATGTAGTTA+AGG - chr1_3:30072594-30072613 Msa0113910:intron 20.0%
!! TAATCCTTAACTACATTATA+AGG + chr1_3:30072601-30072620 None:intergenic 20.0%
!! CTTAACATTTAATGTTCTTA+AGG - chr1_3:30072698-30072717 Msa0113910:intron 20.0%
!! ATCAAAAGTGAACATATTTA+AGG + chr1_3:30072797-30072816 None:intergenic 20.0%
!!! TATCACTTTTTCATACAAAA+AGG + chr1_3:30072855-30072874 None:intergenic 20.0%
!!! CTTATAAGCTTTTAAGTTAT+TGG - chr1_3:30073628-30073647 Msa0113910:intron 20.0%
!! AATGTTAGCAAAATAATAAC+AGG - chr1_3:30073673-30073692 Msa0113910:intron 20.0%
!! CAAACATTAAATGAACTAAT+TGG + chr1_3:30073919-30073938 None:intergenic 20.0%
!!! TCAATTTTCAAAAAGAAACA+AGG + chr1_3:30074271-30074290 None:intergenic 20.0%
!!! TTCTATCATAAACCATATTT+TGG - chr1_3:30074618-30074637 Msa0113910:intron 20.0%
!! GTAAAAACTTATTAATGAGT+TGG + chr1_3:30074645-30074664 None:intergenic 20.0%
!!! TTTTGTTGAAATTGATATAG+AGG - chr1_3:30075444-30075463 Msa0113910:intron 20.0%
!! ACAGTTAAAGTTTATATCTT+GGG + chr1_3:30075644-30075663 None:intergenic 20.0%
!! AACAGTTAAAGTTTATATCT+TGG + chr1_3:30075645-30075664 None:intergenic 20.0%
!! AAGTACATAAAAACATTCAA+GGG - chr1_3:30075871-30075890 Msa0113910:intron 20.0%
!!! GAAATTTTGATGTTAAGTGT+CGG - chr1_3:30067970-30067989 Msa0113910:three_prime_UTR 25.0%
!! AGAGTTAATTGTGGTAATTT+TGG - chr1_3:30068070-30068089 Msa0113910:CDS 25.0%
! ATTTCATAAGAATTGAATGG+AGG - chr1_3:30068205-30068224 Msa0113910:intron 25.0%
! TTTCATAAGAATTGAATGGA+GGG - chr1_3:30068206-30068225 Msa0113910:intron 25.0%
! TCGAGAATAAGTACTTAAAA+TGG - chr1_3:30068302-30068321 Msa0113910:intron 25.0%
! ATGTGACATTTAATCTAAGA+CGG + chr1_3:30068387-30068406 None:intergenic 25.0%
!! GTTATTATTATTGGTTGGTT+TGG + chr1_3:30068573-30068592 None:intergenic 25.0%
!!! AAATGTGACATTTTTTGAGA+CGG + chr1_3:30068602-30068621 None:intergenic 25.0%
! TCCTGTTTATAAGAGAAAAT+TGG - chr1_3:30068691-30068710 Msa0113910:intron 25.0%
! CCTGTTTATAAGAGAAAATT+GGG - chr1_3:30068692-30068711 Msa0113910:intron 25.0%
!! AACATACAAGCCAATAATTT+TGG + chr1_3:30068869-30068888 None:intergenic 25.0%
! GTTGAAAATGTGGTAATTAT+AGG - chr1_3:30069010-30069029 Msa0113910:intron 25.0%
! GTTAAAATCTTGAAATTTCG+GGG + chr1_3:30069480-30069499 None:intergenic 25.0%
! AATATCACAAAGAAGATTCA+AGG + chr1_3:30069520-30069539 None:intergenic 25.0%
! AAACAATAATATCCAATTCG+TGG - chr1_3:30069715-30069734 Msa0113910:intron 25.0%
! CAATTATAGATTGTAAAGGT+AGG + chr1_3:30070189-30070208 None:intergenic 25.0%
!! TTAAAACTCTAATTTTCCAG+AGG + chr1_3:30070325-30070344 None:intergenic 25.0%
! TATAAGCTCAAGTAAACATA+AGG + chr1_3:30070460-30070479 None:intergenic 25.0%
! AACAAACACATACTTAATCT+AGG + chr1_3:30070688-30070707 None:intergenic 25.0%
! TTCTCTATTATCAATTCTCA+AGG + chr1_3:30070746-30070765 None:intergenic 25.0%
! ATAGAGAAGCTAAAAATTGT+AGG - chr1_3:30070758-30070777 Msa0113910:intron 25.0%
! TGTCTAAATTGTCATTCAAT+AGG - chr1_3:30070996-30071015 Msa0113910:intron 25.0%
! GTCTAAATTGTCATTCAATA+GGG - chr1_3:30070997-30071016 Msa0113910:intron 25.0%
! AAGTCTATGTTTGAAAGAAT+AGG - chr1_3:30071693-30071712 Msa0113910:intron 25.0%
!! GTTTTACAAGAAAAATAGAG+AGG - chr1_3:30071877-30071896 Msa0113910:intron 25.0%
! ATAAACTAATTCTCTCTTGA+AGG + chr1_3:30072337-30072356 None:intergenic 25.0%
!! AAGGGTCAATTTTTATTAAG+AGG - chr1_3:30072472-30072491 Msa0113910:CDS 25.0%
!! AGGGTCAATTTTTATTAAGA+GGG - chr1_3:30072473-30072492 Msa0113910:CDS 25.0%
! GAGTCTATTTATCCTTAAAT+AGG - chr1_3:30072555-30072574 Msa0113910:intron 25.0%
! AATTTGTGTATTCAATGCAT+TGG + chr1_3:30072668-30072687 None:intergenic 25.0%
! GATTTGATATAGAAGACTAA+GGG + chr1_3:30072752-30072771 None:intergenic 25.0%
!! GAACATATTTAAGGTGAAAA+GGG + chr1_3:30072788-30072807 None:intergenic 25.0%
!! TGAACATATTTAAGGTGAAA+AGG + chr1_3:30072789-30072808 None:intergenic 25.0%
! GAAGAAATAACCTTAACATA+GGG + chr1_3:30072888-30072907 None:intergenic 25.0%
! AGAAGAAATAACCTTAACAT+AGG + chr1_3:30072889-30072908 None:intergenic 25.0%
!! TTATTTCTTCTTGTTCTCAT+AGG - chr1_3:30072898-30072917 Msa0113910:intron 25.0%
!! TAAGTTCCTCAAAATTTTGT+TGG - chr1_3:30073235-30073254 Msa0113910:intron 25.0%
! CATATTATCTATTGCTCTTT+AGG - chr1_3:30073505-30073524 Msa0113910:intron 25.0%
!! ATCAGAATCTTTTCAAAGAA+AGG - chr1_3:30073529-30073548 Msa0113910:intron 25.0%
! CTTAAAAGCTTATAAGCATA+TGG + chr1_3:30073624-30073643 None:intergenic 25.0%
!!! ATAAGCTTTTAAGTTATTGG+CGG - chr1_3:30073631-30073650 Msa0113910:intron 25.0%
! ATTACACTTACAAAGCATAA+GGG - chr1_3:30073829-30073848 Msa0113910:intron 25.0%
! TATAATACACATATAAGCCT+TGG + chr1_3:30074029-30074048 None:intergenic 25.0%
! TAAGGTATGTTAAAGAACAA+TGG - chr1_3:30074097-30074116 Msa0113910:intron 25.0%
! GAATTAATTAATGTGGCATA+CGG + chr1_3:30074380-30074399 None:intergenic 25.0%
! ATGCCACATTAATTAATTCT+TGG - chr1_3:30074381-30074400 Msa0113910:intron 25.0%
! TGCCACATTAATTAATTCTT+GGG - chr1_3:30074382-30074401 Msa0113910:intron 25.0%
! TTCCCAAGAATTAATTAATG+TGG + chr1_3:30074387-30074406 None:intergenic 25.0%
!! AATATTTGCATTTTGCTTGA+AGG + chr1_3:30074482-30074501 None:intergenic 25.0%
! GCAAAATGCAAATATTCTAA+TGG - chr1_3:30074486-30074505 Msa0113910:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr1_3:30074613-30074632 None:intergenic 25.0%
!!! GTTTCTCTTTTAGTTTTTCT+AGG - chr1_3:30074670-30074689 Msa0113910:intron 25.0%
! TATAGAGATTGTTCATTCTA+AGG + chr1_3:30074955-30074974 None:intergenic 25.0%
! AGAACCAAATCAATTTCTAT+TGG - chr1_3:30074993-30075012 Msa0113910:intron 25.0%
!! TCTATAATCTCATTTTCATC+CGG + chr1_3:30075048-30075067 None:intergenic 25.0%
! TATTAATTTCTGTTCTCTGA+AGG + chr1_3:30075101-30075120 None:intergenic 25.0%
! AGTTAAAGTTTATATCTTGG+GGG + chr1_3:30075642-30075661 None:intergenic 25.0%
! CAGTTAAAGTTTATATCTTG+GGG + chr1_3:30075643-30075662 None:intergenic 25.0%
! TTGTTAGTTACTACAATGAT+AGG + chr1_3:30075672-30075691 None:intergenic 25.0%
!! AATCTGTTTAGAACAAAAGA+TGG + chr1_3:30075714-30075733 None:intergenic 25.0%
! GAAGTACATAAAAACATTCA+AGG - chr1_3:30075870-30075889 Msa0113910:intron 25.0%
!!! AAGGTTACGATGCATTTTTT+TGG - chr1_3:30068000-30068019 Msa0113910:three_prime_UTR 30.0%
!!! GCATTTTTTTGGTCTGTTAT+TGG - chr1_3:30068011-30068030 Msa0113910:three_prime_UTR 30.0%
TATTGAGGAAGAGTTAATTG+TGG - chr1_3:30068061-30068080 Msa0113910:CDS 30.0%
TAATTTACGGCTTAAATGTC+AGG + chr1_3:30068345-30068364 None:intergenic 30.0%
TAGTTGGCTAGCATAATTTA+CGG + chr1_3:30068358-30068377 None:intergenic 30.0%
! ATTGCTATCAATCCTAGTTT+TGG - chr1_3:30068532-30068551 Msa0113910:intron 30.0%
! AATTTTCCTAGACCAAAACT+AGG + chr1_3:30068547-30068566 None:intergenic 30.0%
! CGGGTTGTTGTTATTATTAT+TGG + chr1_3:30068582-30068601 None:intergenic 30.0%
!!! AATGTGACATTTTTTGAGAC+GGG + chr1_3:30068601-30068620 None:intergenic 30.0%
TCAACATTTATTACTACCTC+CGG - chr1_3:30068668-30068687 Msa0113910:intron 30.0%
! TTTTCTCTTATAAACAGGAC+CGG + chr1_3:30068690-30068709 None:intergenic 30.0%
! CCCAATTTTCTCTTATAAAC+AGG + chr1_3:30068695-30068714 None:intergenic 30.0%
TCAGTGAGAACCAAAATTAT+TGG - chr1_3:30068856-30068875 Msa0113910:intron 30.0%
AATGTGGTAATTATAGGTTC+AGG - chr1_3:30069016-30069035 Msa0113910:intron 30.0%
GAACTTGCATAAATAAACCT+TGG - chr1_3:30069256-30069275 Msa0113910:intron 30.0%
TAGAAAATTTGTGAACTCCA+AGG + chr1_3:30069276-30069295 None:intergenic 30.0%
! CACAAATTTTCTACTTGTCT+AGG - chr1_3:30069283-30069302 Msa0113910:intron 30.0%
CAAATGATTCATCATATGGT+CGG + chr1_3:30069650-30069669 None:intergenic 30.0%
ATGGCAAATGATTCATCATA+TGG + chr1_3:30069654-30069673 None:intergenic 30.0%
AATATCCAATTCGTGGTATA+TGG - chr1_3:30069722-30069741 Msa0113910:intron 30.0%
ATATCCAATTCGTGGTATAT+GGG - chr1_3:30069723-30069742 Msa0113910:intron 30.0%
! ACCTTTTCTTGATTACATTC+AGG - chr1_3:30069767-30069786 Msa0113910:intron 30.0%
ACCTGAATGTAATCAAGAAA+AGG + chr1_3:30069771-30069790 None:intergenic 30.0%
GAGAGTTGGGAAATATTAAT+CGG + chr1_3:30070064-30070083 None:intergenic 30.0%
AGAGAGTGGATAAACTAAAA+GGG + chr1_3:30070259-30070278 None:intergenic 30.0%
AACATAAGGTGTAAACTGAA+AGG + chr1_3:30070446-30070465 None:intergenic 30.0%
!!! CTTTGTAATTTGGCTTTTAG+TGG - chr1_3:30070841-30070860 Msa0113910:intron 30.0%
ATCATAATTCTCTTCTCACA+TGG - chr1_3:30070905-30070924 Msa0113910:CDS 30.0%
TCATAATTCTCTTCTCACAT+GGG - chr1_3:30070906-30070925 Msa0113910:CDS 30.0%
!!! TTTTGCAAGCACACTTTTTT+GGG + chr1_3:30070960-30070979 None:intergenic 30.0%
!! ATTTTGCAAGCACACTTTTT+TGG + chr1_3:30070961-30070980 None:intergenic 30.0%
! ACTACCAGCTGTAAAATTTT+AGG - chr1_3:30071159-30071178 Msa0113910:intron 30.0%
! CTAACCTAAAATTTTACAGC+TGG + chr1_3:30071166-30071185 None:intergenic 30.0%
CTATTTCGACTTCTTTATGA+AGG - chr1_3:30071260-30071279 Msa0113910:intron 30.0%
AACCTGTTAAACAAACATTC+AGG + chr1_3:30071329-30071348 None:intergenic 30.0%
GATATTGTGAGCAATACAAA+AGG - chr1_3:30071417-30071436 Msa0113910:intron 30.0%
TTAGTAAGAAAGCTTGATAG+TGG - chr1_3:30071456-30071475 Msa0113910:intron 30.0%
! TAGTAAGAAAGCTTGATAGT+GGG - chr1_3:30071457-30071476 Msa0113910:intron 30.0%
! TAAGTAGCTATAAGCCTTTT+AGG - chr1_3:30071830-30071849 Msa0113910:intron 30.0%
! AAGTAGCTATAAGCCTTTTA+GGG - chr1_3:30071831-30071850 Msa0113910:intron 30.0%
CAAGATTGAACATAGATCAA+TGG + chr1_3:30071968-30071987 None:intergenic 30.0%
TGTAGTAATGACAAGAGATA+TGG + chr1_3:30072211-30072230 None:intergenic 30.0%
ACTACATTTGTCCCTAAATA+TGG - chr1_3:30072225-30072244 Msa0113910:intron 30.0%
CTACATTTGTCCCTAAATAT+GGG - chr1_3:30072226-30072245 Msa0113910:intron 30.0%
ATCACGAGAATTAAGAATGT+TGG - chr1_3:30072263-30072282 Msa0113910:CDS 30.0%
! ATTAAGAGGGTCTTGTATTT+AGG - chr1_3:30072486-30072505 Msa0113910:CDS 30.0%
! TTAAGAGGGTCTTGTATTTA+GGG - chr1_3:30072487-30072506 Msa0113910:CDS 30.0%
CCTAAATAAGTAGGGAATTT+AGG + chr1_3:30072532-30072551 None:intergenic 30.0%
CCTAAATTCCCTACTTATTT+AGG - chr1_3:30072529-30072548 Msa0113910:intron 30.0%
GACTCAATCCTAAATAAGTA+GGG + chr1_3:30072540-30072559 None:intergenic 30.0%
AGACTCAATCCTAAATAAGT+AGG + chr1_3:30072541-30072560 None:intergenic 30.0%
CGATTTGATATAGAAGACTA+AGG + chr1_3:30072753-30072772 None:intergenic 30.0%
CTTTGAACTAAAATACCTGA+TGG + chr1_3:30073024-30073043 None:intergenic 30.0%
!!! AAAATTTTGTTGGTGGCTAA+TGG - chr1_3:30073245-30073264 Msa0113910:intron 30.0%
TAATGGTAAGTAGTTATCAG+TGG - chr1_3:30073262-30073281 Msa0113910:intron 30.0%
! CATAATTTGATGACACAATG+AGG - chr1_3:30073341-30073360 Msa0113910:intron 30.0%
! TATAATTTGTCCTCACGTAA+AGG + chr1_3:30073432-30073451 None:intergenic 30.0%
TTACGTGAGGACAAATTATA+AGG - chr1_3:30073432-30073451 Msa0113910:intron 30.0%
TTGAAATAACTAAGTGTAGC+AGG + chr1_3:30073467-30073486 None:intergenic 30.0%
GTTACAAGAAACAAATTGGA+AGG + chr1_3:30073747-30073766 None:intergenic 30.0%
! TTCTTAACCTCTTCATGTTT+TGG + chr1_3:30073772-30073791 None:intergenic 30.0%
AAAACATGAAGAGGTTAAGA+AGG - chr1_3:30073771-30073790 Msa0113910:intron 30.0%
TTAAGAAGGAATTAACAGAC+AGG - chr1_3:30073785-30073804 Msa0113910:intron 30.0%
TAAGAAGGAATTAACAGACA+GGG - chr1_3:30073786-30073805 Msa0113910:intron 30.0%
CATTACACTTACAAAGCATA+AGG - chr1_3:30073828-30073847 Msa0113910:intron 30.0%
TTACACTTACAAAGCATAAG+GGG - chr1_3:30073830-30073849 Msa0113910:intron 30.0%
ATTAGCATAAGCACCTAATA+AGG + chr1_3:30073868-30073887 None:intergenic 30.0%
TGCTAATGAGAATAAAGTCT+TGG - chr1_3:30073881-30073900 Msa0113910:CDS 30.0%
TTCTTTAACATACCTTACTG+AGG + chr1_3:30074094-30074113 None:intergenic 30.0%
GTTAGATATCATAGTACTCA+TGG - chr1_3:30074146-30074165 Msa0113910:intron 30.0%
ATGATACATGAGTTCTTTCA+AGG - chr1_3:30074192-30074211 Msa0113910:intron 30.0%
! GACAATTGTCTTTTGTTAGA+TGG - chr1_3:30074230-30074249 Msa0113910:intron 30.0%
! AATTGTCTTTTGTTAGATGG+TGG - chr1_3:30074233-30074252 Msa0113910:intron 30.0%
! TAATGAGTTGGACCAAAATA+TGG + chr1_3:30074633-30074652 None:intergenic 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG + chr1_3:30074758-30074777 None:intergenic 30.0%
ACGTCCAATAGAAATTGATT+TGG + chr1_3:30075000-30075019 None:intergenic 30.0%
! CTATAATCTCATTTTCATCC+GGG + chr1_3:30075047-30075066 None:intergenic 30.0%
GGATGAAAATGAGATTATAG+AGG - chr1_3:30075047-30075066 Msa0113910:intron 30.0%
TAGAGAAGATGATTATTCCT+TGG + chr1_3:30075191-30075210 None:intergenic 30.0%
ATTTCAAATCTCGATCATGA+AGG + chr1_3:30075219-30075238 None:intergenic 30.0%
TGGTTATATTATGCATGACA+TGG - chr1_3:30075305-30075324 Msa0113910:intron 30.0%
TTTGTCAATACCATCAAACA+AGG + chr1_3:30075356-30075375 None:intergenic 30.0%
CTTTCAAAAAAATTCATGGC+AGG - chr1_3:30075393-30075412 Msa0113910:intron 30.0%
!! TTTTTAAAGAACTGCACACA+CGG + chr1_3:30075511-30075530 None:intergenic 30.0%
! TGTGCAGTTCTTTAAAAACA+AGG - chr1_3:30075513-30075532 Msa0113910:intron 30.0%
! TTGTTCTAAACAGATTTGAG+AGG - chr1_3:30075718-30075737 Msa0113910:intron 30.0%
!!! TGATTTTGCATTGATTTTGC+AGG - chr1_3:30075788-30075807 Msa0113910:intron 30.0%
CAAAATTGAATCACAGAACT+CGG + chr1_3:30075903-30075922 None:intergenic 30.0%
!! AACTTGCTGAATTCAAATAG+GGG + chr1_3:30076064-30076083 None:intergenic 30.0%
!! GAACTTGCTGAATTCAAATA+GGG + chr1_3:30076065-30076084 None:intergenic 30.0%
!! TGAACTTGCTGAATTCAAAT+AGG + chr1_3:30076066-30076085 None:intergenic 30.0%
GTATGGTCTGTAAGAAAGAA+TGG - chr1_3:30067607-30067626 Msa0113910:three_prime_UTR 35.0%
AAGATGAAACGATGATGAGA+AGG + chr1_3:30067719-30067738 None:intergenic 35.0%
CAAATTCGCACTAGTGTTAT+AGG - chr1_3:30067893-30067912 Msa0113910:three_prime_UTR 35.0%
!! TTTGGTGTCAATATCGTGTT+AGG - chr1_3:30068160-30068179 Msa0113910:intron 35.0%
AGGGTAGTTGTTAAAGGATT+TGG - chr1_3:30068225-30068244 Msa0113910:intron 35.0%
GTTGTTAAAGGATTTGGAGA+TGG - chr1_3:30068231-30068250 Msa0113910:intron 35.0%
! TGTCACATTTGAGTTATGCA+CGG - chr1_3:30068399-30068418 Msa0113910:CDS 35.0%
TGAGTTATGCACGGTTATTA+AGG - chr1_3:30068408-30068427 Msa0113910:CDS 35.0%
!!! ATCAATCCTAGTTTTGGTCT+AGG - chr1_3:30068538-30068557 Msa0113910:intron 35.0%
!! TCAACCAAAGTTGATGTATC+TGG + chr1_3:30068751-30068770 None:intergenic 35.0%
! CCGTTTTATAGGAGAAACTT+GGG + chr1_3:30068774-30068793 None:intergenic 35.0%
CCCAAGTTTCTCCTATAAAA+CGG - chr1_3:30068771-30068790 Msa0113910:intron 35.0%
! ACCGTTTTATAGGAGAAACT+TGG + chr1_3:30068775-30068794 None:intergenic 35.0%
TTAAAAACACTATACTCCCC+CGG + chr1_3:30068798-30068817 None:intergenic 35.0%
! TTGGTTCTCACTGAGTAATA+AGG + chr1_3:30068850-30068869 None:intergenic 35.0%
!!! TGACAGTTTTTTCTTCTCAC+AGG - chr1_3:30068980-30068999 Msa0113910:intron 35.0%
TAATACCTGTCCATTAGATC+AGG + chr1_3:30069196-30069215 None:intergenic 35.0%
AGAAGATTCAAGGAACCAAT+TGG + chr1_3:30069510-30069529 None:intergenic 35.0%
! CGGTAGTTTTTATGACATTC+AGG + chr1_3:30069630-30069649 None:intergenic 35.0%
CAGTGGCAATAATTACAGTA+TGG + chr1_3:30069800-30069819 None:intergenic 35.0%
CATACTGTAATTATTGCCAC+TGG - chr1_3:30069798-30069817 Msa0113910:intron 35.0%
! TACCCAGAGAAGATGAATTT+TGG - chr1_3:30069844-30069863 Msa0113910:CDS 35.0%
CTCCAAAATTCATCTTCTCT+GGG + chr1_3:30069849-30069868 None:intergenic 35.0%
CAAATATAATGCTTCCTCTG+TGG + chr1_3:30069961-30069980 None:intergenic 35.0%
ATATTTCCCAACTCTCTACT+TGG - chr1_3:30070068-30070087 Msa0113910:CDS 35.0%
! ATTGTGAAGTGTTTAAGAGC+AGG + chr1_3:30070232-30070251 None:intergenic 35.0%
GAGAGTGGATAAACTAAAAG+GGG + chr1_3:30070258-30070277 None:intergenic 35.0%
GAGAGAGTGGATAAACTAAA+AGG + chr1_3:30070260-30070279 None:intergenic 35.0%
AACTGAAAGGAAAAACAGAG+AGG + chr1_3:30070433-30070452 None:intergenic 35.0%
TTAGCCTATGTTTATGTTGG+CGG + chr1_3:30070816-30070835 None:intergenic 35.0%
GCTAAGGCTTCTTTGTAATT+TGG - chr1_3:30070831-30070850 Msa0113910:intron 35.0%
TATGGAAAGAGAATGATCAC+AGG + chr1_3:30070934-30070953 None:intergenic 35.0%
!!! TTTGCAAGCACACTTTTTTG+GGG + chr1_3:30070959-30070978 None:intergenic 35.0%
GAAAACTATCTGCTTAGTCT+AGG - chr1_3:30071112-30071131 Msa0113910:intron 35.0%
AGGTTAGCAAAAGGGATTAA+AGG - chr1_3:30071179-30071198 Msa0113910:intron 35.0%
ATTTCCTGTCAGTTTGAGTA+TGG - chr1_3:30071231-30071250 Msa0113910:intron 35.0%
CTCCTGAATGTTTGTTTAAC+AGG - chr1_3:30071324-30071343 Msa0113910:intron 35.0%
AATACAAAAGGACAGATGTC+TGG - chr1_3:30071429-30071448 Msa0113910:intron 35.0%
!! AGTAAGAAAGCTTGATAGTG+GGG - chr1_3:30071458-30071477 Msa0113910:intron 35.0%
! ACAGTTGAGTATTTGGTGAA+TGG + chr1_3:30071527-30071546 None:intergenic 35.0%
ACTGCAAAAACTTCAGTTGA+AGG - chr1_3:30071600-30071619 Msa0113910:intron 35.0%
! ATCAACACAAAGCATCCAAT+AGG + chr1_3:30071655-30071674 None:intergenic 35.0%
TTCCAGATCTCTCTAATGTT+TGG - chr1_3:30071903-30071922 Msa0113910:intron 35.0%
TCCAGATCTCTCTAATGTTT+GGG - chr1_3:30071904-30071923 Msa0113910:intron 35.0%
TCTCTCTAATGTTTGGGAAA+TGG - chr1_3:30071910-30071929 Msa0113910:intron 35.0%
CTCTCTAATGTTTGGGAAAT+GGG - chr1_3:30071911-30071930 Msa0113910:intron 35.0%
ATTCTCGTGATTTAGTGAAG+CGG + chr1_3:30072254-30072273 None:intergenic 35.0%
ACGAGAATTAAGAATGTTGG+TGG - chr1_3:30072266-30072285 Msa0113910:CDS 35.0%
TCAAAGAGGGTCTCATAAAA+AGG - chr1_3:30072453-30072472 Msa0113910:CDS 35.0%
CAAAGAGGGTCTCATAAAAA+GGG - chr1_3:30072454-30072473 Msa0113910:CDS 35.0%
TCTTCTTATAGAGTTCCATC+AGG - chr1_3:30073006-30073025 Msa0113910:intron 35.0%
! GTTCCTCAAAATTTTGTTGG+TGG - chr1_3:30073238-30073257 Msa0113910:intron 35.0%
! TAGCCACCAACAAAATTTTG+AGG + chr1_3:30073244-30073263 None:intergenic 35.0%
TAACTAAGTGTAGCAGGTAA+TGG + chr1_3:30073461-30073480 None:intergenic 35.0%
TGGAAGGCTAAGATTCATAT+TGG + chr1_3:30073731-30073750 None:intergenic 35.0%
GGCTGTTACAAGAAACAAAT+TGG + chr1_3:30073751-30073770 None:intergenic 35.0%
GCAGGTATGTATTCCTTATT+AGG - chr1_3:30073852-30073871 Msa0113910:CDS 35.0%
AATTGTACCATGATAGTCCA+AGG - chr1_3:30074009-30074028 Msa0113910:CDS 35.0%
ATATAAGCCTTGGACTATCA+TGG + chr1_3:30074019-30074038 None:intergenic 35.0%
TAACATACCTTACTGAGGAT+TGG + chr1_3:30074089-30074108 None:intergenic 35.0%
GAACTATGCATTGAGACATT+TGG - chr1_3:30074289-30074308 Msa0113910:intron 35.0%
GACTATTCTACAGAATCTAC+AGG - chr1_3:30074702-30074721 Msa0113910:CDS 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr1_3:30074762-30074781 Msa0113910:CDS 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr1_3:30074766-30074785 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr1_3:30074769-30074788 None:intergenic 35.0%
! TACCCTAACTCTCTTTTTGA+TGG - chr1_3:30074788-30074807 Msa0113910:CDS 35.0%
CTCCATCAAAAAGAGAGTTA+GGG + chr1_3:30074793-30074812 None:intergenic 35.0%
TCTCCATCAAAAAGAGAGTT+AGG + chr1_3:30074794-30074813 None:intergenic 35.0%
TCAGTGTTTCATGATGTTGT+TGG - chr1_3:30074914-30074933 Msa0113910:intron 35.0%
GAACAATCTCTATATCCTCT+AGG - chr1_3:30074961-30074980 Msa0113910:intron 35.0%
CTCATTACAAATTCTGAACC+CGG - chr1_3:30075026-30075045 Msa0113910:intron 35.0%
AAGATGATTATTCCTTGGAG+TGG + chr1_3:30075186-30075205 None:intergenic 35.0%
CCACGTTAATACATTCACAA+TGG + chr1_3:30075254-30075273 None:intergenic 35.0%
CCATTGTGAATGTATTAACG+TGG - chr1_3:30075251-30075270 Msa0113910:intron 35.0%
! ACTTTCACTTCCTTGTTTGA+TGG - chr1_3:30075343-30075362 Msa0113910:intron 35.0%
TATTTGCCTCGATGAATTCT+CGG + chr1_3:30075846-30075865 None:intergenic 35.0%
TATGATCAGTCATTTCACCT+TGG + chr1_3:30076145-30076164 None:intergenic 35.0%
TATCTAGTTAACGTGAGATC+AGG + chr1_3:30076263-30076282 None:intergenic 35.0%
AGATATTTCCACTGTAACTG+CGG - chr1_3:30076278-30076297 Msa0113910:five_prime_UTR 35.0%
! GTCTACTGGTGATGATTGTA+TGG - chr1_3:30067590-30067609 Msa0113910:three_prime_UTR 40.0%
AGAATGGTTACTGCGAAGAT+AGG - chr1_3:30067623-30067642 Msa0113910:three_prime_UTR 40.0%
AAGTAATGATGAACCTGGTG+AGG + chr1_3:30067843-30067862 None:intergenic 40.0%
AGAGCAAGTAATGATGAACC+TGG + chr1_3:30067848-30067867 None:intergenic 40.0%
!! GTTAAGTGTCGGAGAAAACA+AGG - chr1_3:30067981-30068000 Msa0113910:three_prime_UTR 40.0%
GAATGGAGGGTAGTTGTTAA+AGG - chr1_3:30068219-30068238 Msa0113910:intron 40.0%
AAAGGATTTGGAGATGGCTT+AGG - chr1_3:30068237-30068256 Msa0113910:intron 40.0%
TTAAATGTCAGGCTGAGTGT+TGG + chr1_3:30068334-30068353 None:intergenic 40.0%
GAGGTAGTTGAGTATAACAG+TGG - chr1_3:30068506-30068525 Msa0113910:intron 40.0%
CAGTCCAGATACATCAACTT+TGG - chr1_3:30068744-30068763 Msa0113910:intron 40.0%
GTTTCTCCTATAAAACGGTC+CGG - chr1_3:30068776-30068795 Msa0113910:intron 40.0%
TTTCTCCTATAAAACGGTCC+GGG - chr1_3:30068777-30068796 Msa0113910:intron 40.0%
AGGTAACGCAGTTGAAAATG+TGG - chr1_3:30069000-30069019 Msa0113910:intron 40.0%
GAACACTACGGGTTTCAAAT+TGG + chr1_3:30069080-30069099 None:intergenic 40.0%
ACTGAAGTAGAGAACTTTCC+AGG - chr1_3:30069148-30069167 Msa0113910:intron 40.0%
AACTTTCCAGGATTTCCAGA+CGG - chr1_3:30069160-30069179 Msa0113910:intron 40.0%
GATTACTGGACCTGATCTAA+TGG - chr1_3:30069183-30069202 Msa0113910:intron 40.0%
! TCACTGCTTTGGACAGTAAA+AGG + chr1_3:30069384-30069403 None:intergenic 40.0%
AACTCCCATATACCACGAAT+TGG + chr1_3:30069730-30069749 None:intergenic 40.0%
GCTCCAAAATTCATCTTCTC+TGG + chr1_3:30069850-30069869 None:intergenic 40.0%
!!! GAAGATGAATTTTGGAGCAG+AGG - chr1_3:30069852-30069871 Msa0113910:CDS 40.0%
AGTGCTTGTGCAATTTGTGA+TGG - chr1_3:30069879-30069898 Msa0113910:CDS 40.0%
AGAATTTGACCCTTGAAGAG+AGG + chr1_3:30069912-30069931 None:intergenic 40.0%
! AAATTCTTGCTGTCGTTGGA+GGG - chr1_3:30069925-30069944 Msa0113910:intron 40.0%
!! CTTCTAAAGCCATGCAAGAT+AGG - chr1_3:30070033-30070052 Msa0113910:intron 40.0%
GCCAACATAAACATAGGCTA+AGG - chr1_3:30070815-30070834 Msa0113910:intron 40.0%
GCCTTAGCCTATGTTTATGT+TGG + chr1_3:30070819-30070838 None:intergenic 40.0%
!!! GCACACTTTTTTGGGGAATA+TGG + chr1_3:30070952-30070971 None:intergenic 40.0%
AACTCCATACTCAAACTGAC+AGG + chr1_3:30071238-30071257 None:intergenic 40.0%
TTGAAGTGCACAGTGACATT+TGG + chr1_3:30071384-30071403 None:intergenic 40.0%
CCTCTCAACAGTTGAGTATT+TGG + chr1_3:30071534-30071553 None:intergenic 40.0%
CCAAATACTCAACTGTTGAG+AGG - chr1_3:30071531-30071550 Msa0113910:intron 40.0%
TGGCTACTTACTAGTCAAAG+AGG - chr1_3:30071575-30071594 Msa0113910:intron 40.0%
GGCTACTTACTAGTCAAAGA+GGG - chr1_3:30071576-30071595 Msa0113910:intron 40.0%
TCCCAAACATTAGAGAGATC+TGG + chr1_3:30071908-30071927 None:intergenic 40.0%
GATCTATGTTCAATCTTGCC+TGG - chr1_3:30071970-30071989 Msa0113910:intron 40.0%
TGTTCAATCTTGCCTGGATA+TGG - chr1_3:30071976-30071995 Msa0113910:intron 40.0%
CGTTCTCTAAATCCATATCC+AGG + chr1_3:30071991-30072010 None:intergenic 40.0%
TTCTCGTGATTTAGTGAAGC+GGG + chr1_3:30072253-30072272 None:intergenic 40.0%
! TAATAGAGGTATGCGTATGC+TGG - chr1_3:30072403-30072422 Msa0113910:CDS 40.0%
TGAAAAAGTGATAACTGCCG+AGG - chr1_3:30072862-30072881 Msa0113910:intron 40.0%
ATAACCTTAACATAGGGCCT+CGG + chr1_3:30072882-30072901 None:intergenic 40.0%
!! AGTGGCTTTGAGCAATGTTA+CGG - chr1_3:30073280-30073299 Msa0113910:intron 40.0%
! AATCATTGAAGCGCCCATTT+GGG + chr1_3:30073368-30073387 None:intergenic 40.0%
! AAATCATTGAAGCGCCCATT+TGG + chr1_3:30073369-30073388 None:intergenic 40.0%
ATCACACATTCCTTTACGTG+AGG - chr1_3:30073419-30073438 Msa0113910:intron 40.0%
GTAACAGCCAAAACATGAAG+AGG - chr1_3:30073762-30073781 Msa0113910:intron 40.0%
CTGTAAACAGGAAAACGTAC+AGG + chr1_3:30073976-30073995 None:intergenic 40.0%
ATTGAAGCCAATCCTCAGTA+AGG - chr1_3:30074079-30074098 Msa0113910:CDS 40.0%
!! TCTTTTGTTAGATGGTGGTG+TGG - chr1_3:30074238-30074257 Msa0113910:intron 40.0%
AAAATAGGCTCAGGTGGTTT+GGG + chr1_3:30074743-30074762 None:intergenic 40.0%
TTGGAGTTTGTCTGATGTAG+TGG + chr1_3:30075124-30075143 None:intergenic 40.0%
ATCCATGAAGCAAGTCACAA+TGG + chr1_3:30075744-30075763 None:intergenic 40.0%
! TGATTTTGCAGGACTGTTTC+AGG - chr1_3:30075799-30075818 Msa0113910:intron 40.0%
AGAATACCGAGAATTCATCG+AGG - chr1_3:30075837-30075856 Msa0113910:intron 40.0%
CGAAAATGCTGATCAGTTCA+AGG + chr1_3:30075974-30075993 None:intergenic 40.0%
TTTCACCTTGGATGATGACA+GGG + chr1_3:30076133-30076152 None:intergenic 40.0%
ATTTCACCTTGGATGATGAC+AGG + chr1_3:30076134-30076153 None:intergenic 40.0%
! AGATGTTTCTACTGCAACAG+TGG - chr1_3:30076231-30076250 Msa0113910:CDS 40.0%
ACTGCGAAGATAGGACTCTT+CGG - chr1_3:30067632-30067651 Msa0113910:three_prime_UTR 45.0%
GAAACGATGATGAGAAGGTG+AGG + chr1_3:30067714-30067733 None:intergenic 45.0%
AAGAACGAGAACGAAGAGAG+CGG + chr1_3:30067754-30067773 None:intergenic 45.0%
! TCTAAGACGGAGAGAGTAGT+TGG + chr1_3:30068374-30068393 None:intergenic 45.0%
TCTCTTATAAACAGGACCGG+AGG + chr1_3:30068687-30068706 None:intergenic 45.0%
GGGTCAACAAAAGACGTATC+TGG - chr1_3:30068712-30068731 Msa0113910:intron 45.0%
TTCTCCTATAAAACGGTCCG+GGG - chr1_3:30068778-30068797 Msa0113910:intron 45.0%
ATTATAGGTTCAGGTCCTGC+AGG - chr1_3:30069025-30069044 Msa0113910:intron 45.0%
! TTTGAAACCCGTAGTGTTCG+AGG - chr1_3:30069081-30069100 Msa0113910:intron 45.0%
TTGAAACCCGTAGTGTTCGA+GGG - chr1_3:30069082-30069101 Msa0113910:intron 45.0%
! TTGGTAACCCTCGAACACTA+CGG + chr1_3:30069092-30069111 None:intergenic 45.0%
AGTGTTCGAGGGTTACCAAA+TGG - chr1_3:30069093-30069112 Msa0113910:intron 45.0%
GTGTTCGAGGGTTACCAAAT+GGG - chr1_3:30069094-30069113 Msa0113910:intron 45.0%
ACTTTCCAGGATTTCCAGAC+GGG - chr1_3:30069161-30069180 Msa0113910:intron 45.0%
! TCTACTTGTCTAGGATGCGA+CGG - chr1_3:30069292-30069311 Msa0113910:intron 45.0%
TGTCCAAAGCAGTGAACGTA+AGG - chr1_3:30069389-30069408 Msa0113910:intron 45.0%
TCACCTTACGTTCACTGCTT+TGG + chr1_3:30069395-30069414 None:intergenic 45.0%
GAGCAACTGCAAAACGACTT+AGG - chr1_3:30069820-30069839 Msa0113910:CDS 45.0%
! GGTCAAATTCTTGCTGTCGT+TGG - chr1_3:30069921-30069940 Msa0113910:intron 45.0%
! CAAATTCTTGCTGTCGTTGG+AGG - chr1_3:30069924-30069943 Msa0113910:intron 45.0%
! AATTCTTGCTGTCGTTGGAG+GGG - chr1_3:30069926-30069945 Msa0113910:intron 45.0%
TTGTACGTCGAGACCAACTA+AGG - chr1_3:30070009-30070028 Msa0113910:intron 45.0%
TGTACGTCGAGACCAACTAA+GGG - chr1_3:30070010-30070029 Msa0113910:intron 45.0%
!! TGGCTTTAGAAGCCCTTAGT+TGG + chr1_3:30070025-30070044 None:intergenic 45.0%
CAGCTACCAAGTAGAGAGTT+GGG + chr1_3:30070077-30070096 None:intergenic 45.0%
TCAGCTACCAAGTAGAGAGT+TGG + chr1_3:30070078-30070097 None:intergenic 45.0%
ACATACGCACAAGATTCCTC+TGG - chr1_3:30070306-30070325 Msa0113910:intron 45.0%
ATTTCTCGTGAACGTGCGTT+AGG + chr1_3:30070790-30070809 None:intergenic 45.0%
TCCACCGCCAACATAAACAT+AGG - chr1_3:30070809-30070828 Msa0113910:intron 45.0%
GCACTTCAATACAGAGACTG+TGG - chr1_3:30071395-30071414 Msa0113910:intron 45.0%
!! AAGAAAGCTTGATAGTGGGG+AGG - chr1_3:30071461-30071480 Msa0113910:intron 45.0%
TATGCCGTAGAATAGCCCTT+TGG + chr1_3:30071502-30071521 None:intergenic 45.0%
AAAGGGCTATTCTACGGCAT+AGG - chr1_3:30071501-30071520 Msa0113910:intron 45.0%
! CAGACTGGTCAAGTTCAACT+TGG + chr1_3:30071557-30071576 None:intergenic 45.0%
! CAAGTTGAACTTGACCAGTC+TGG - chr1_3:30071555-30071574 Msa0113910:intron 45.0%
TGACTAGTAAGTAGCCAGAC+TGG + chr1_3:30071572-30071591 None:intergenic 45.0%
! GTTGAAGGTGTATTTGCTGC+TGG - chr1_3:30071615-30071634 Msa0113910:intron 45.0%
GAGATGTGCAGGTAACCTAT+TGG - chr1_3:30071637-30071656 Msa0113910:intron 45.0%
!! AGCCTTTTAGGGAGAGTCAT+TGG - chr1_3:30071842-30071861 Msa0113910:intron 45.0%
TGAAGCGGGTCCCATATTTA+GGG + chr1_3:30072239-30072258 None:intergenic 45.0%
! GAGGGTCTTGTATTTAGGGA+CGG - chr1_3:30072491-30072510 Msa0113910:CDS 45.0%
!! AATGTTCTTAAGGAGTGCCC+CGG - chr1_3:30072708-30072727 Msa0113910:intron 45.0%
TGTTCTCATAGGACCATGAG+TGG - chr1_3:30072909-30072928 Msa0113910:intron 45.0%
!! GTGGCTTTGAGCAATGTTAC+GGG - chr1_3:30073281-30073300 Msa0113910:intron 45.0%
TGACACAATGAGGTCCCAAA+TGG - chr1_3:30073351-30073370 Msa0113910:intron 45.0%
GACACAATGAGGTCCCAAAT+GGG - chr1_3:30073352-30073371 Msa0113910:intron 45.0%
AACAGACAGGGATGTTCAAG+CGG - chr1_3:30073798-30073817 Msa0113910:intron 45.0%
ACTTACAAAGCATAAGGGGC+AGG - chr1_3:30073834-30073853 Msa0113910:intron 45.0%
TCGCAGAGCATACTGTAAAC+AGG + chr1_3:30073988-30074007 None:intergenic 45.0%
TTATACACGTCACCGACATG+TGG - chr1_3:30074044-30074063 Msa0113910:CDS 45.0%
! ATTGGCTTCAATGTCCGACA+CGG + chr1_3:30074071-30074090 None:intergenic 45.0%
TCCGACATATGAGCATCACA+GGG + chr1_3:30074344-30074363 None:intergenic 45.0%
TTCCGACATATGAGCATCAC+AGG + chr1_3:30074345-30074364 None:intergenic 45.0%
! TTAGTGGGATAAGGCTTGGT+TGG + chr1_3:30074561-30074580 None:intergenic 45.0%
! CAAGCCTTATCCCACTAACT+GGG - chr1_3:30074563-30074582 Msa0113910:CDS 45.0%
! AAGCCTTATCCCACTAACTG+GGG - chr1_3:30074564-30074583 Msa0113910:CDS 45.0%
GAAAATAGGCTCAGGTGGTT+TGG + chr1_3:30074744-30074763 None:intergenic 45.0%
!! AGATGGTGGAAAATAGGCTC+AGG + chr1_3:30074752-30074771 None:intergenic 45.0%
!! GGTTCTGAAGTATCTCCTAG+AGG + chr1_3:30074979-30074998 None:intergenic 45.0%
TTCCTTGGAGTGGAGCTTAA+CGG + chr1_3:30075176-30075195 None:intergenic 45.0%
AATTGACAGCGCTATTCAGC+AGG + chr1_3:30075939-30075958 None:intergenic 45.0%
AACTACCAGCTTCTCGTTGA+AGG - chr1_3:30076085-30076104 Msa0113910:CDS 45.0%
GTTAACGTGAGATCAGGAAG+TGG + chr1_3:30076257-30076276 None:intergenic 45.0%
TATTTCCACTGTAACTGCGG+CGG - chr1_3:30076281-30076300 Msa0113910:five_prime_UTR 45.0%
!!! ATTTTTTTTTACATTTTAAT+TGG - chr1_3:30076171-30076190 Msa0113910:CDS 5.0%
GAAGATAGGACTCTTCGGAG+TGG - chr1_3:30067637-30067656 Msa0113910:three_prime_UTR 50.0%
ATGAGAAGGTGAGGAGAGAG+AGG + chr1_3:30067705-30067724 None:intergenic 50.0%
!! AAGAAGTGTCGGAAGAGGCT+CGG + chr1_3:30067808-30067827 None:intergenic 50.0%
! TACGGAGGAGGAAGAAGTGT+CGG + chr1_3:30067819-30067838 None:intergenic 50.0%
TGATGAACCTGGTGAGGCTA+CGG + chr1_3:30067837-30067856 None:intergenic 50.0%
TCTCCTATAAAACGGTCCGG+GGG - chr1_3:30068779-30068798 Msa0113910:intron 50.0%
ATTGCTGCTGTGTATCCTGC+AGG + chr1_3:30069043-30069062 None:intergenic 50.0%
TGGTAACCCTCGAACACTAC+GGG + chr1_3:30069091-30069110 None:intergenic 50.0%
TTCGAGGGTTACCAAATGGG+TGG - chr1_3:30069097-30069116 Msa0113910:intron 50.0%
TACCAAATGGGTGGTGTTCC+TGG - chr1_3:30069106-30069125 Msa0113910:intron 50.0%
ACCAAATGGGTGGTGTTCCT+GGG - chr1_3:30069107-30069126 Msa0113910:intron 50.0%
GTAGTCATCAATTGTCCCCC+AGG + chr1_3:30069127-30069146 None:intergenic 50.0%
GTAATCCCGTCTGGAAATCC+TGG + chr1_3:30069169-30069188 None:intergenic 50.0%
GGATTTCCAGACGGGATTAC+TGG - chr1_3:30069169-30069188 Msa0113910:intron 50.0%
! CTGGACCTGATCTAATGGAC+AGG - chr1_3:30069188-30069207 Msa0113910:intron 50.0%
! TCGTTTTGCAGTTGCTCCAG+TGG + chr1_3:30069817-30069836 None:intergenic 50.0%
! TGGAGCATCACCTCTCTTCA+AGG - chr1_3:30069899-30069918 Msa0113910:intron 50.0%
! GGAGCATCACCTCTCTTCAA+GGG - chr1_3:30069900-30069919 Msa0113910:intron 50.0%
! ATTCTTGCTGTCGTTGGAGG+GGG - chr1_3:30069927-30069946 Msa0113910:intron 50.0%
TCGGACACACCTATCTTGCA+TGG + chr1_3:30070045-30070064 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+TGG + chr1_3:30070273-30070292 None:intergenic 50.0%
GCCTATGTTTATGTTGGCGG+TGG + chr1_3:30070813-30070832 None:intergenic 50.0%
AGTCAGTGCTTGAGGCCAAA+GGG - chr1_3:30071484-30071503 Msa0113910:intron 50.0%
GAGGCCAAAGGGCTATTCTA+CGG - chr1_3:30071495-30071514 Msa0113910:intron 50.0%
! ATTTGCTGCTGGAGATGTGC+AGG - chr1_3:30071626-30071645 Msa0113910:intron 50.0%
GGCCAATGACTCTCCCTAAA+AGG + chr1_3:30071847-30071866 None:intergenic 50.0%
GTGAAGCGGGTCCCATATTT+AGG + chr1_3:30072240-30072259 None:intergenic 50.0%
! GGTCTTGTATTTAGGGACGG+AGG - chr1_3:30072494-30072513 Msa0113910:CDS 50.0%
!! ATGTTCTTAAGGAGTGCCCC+GGG - chr1_3:30072709-30072728 Msa0113910:intron 50.0%
AAATGCTAACAAGCGACCCC+GGG + chr1_3:30072729-30072748 None:intergenic 50.0%
GAAATGCTAACAAGCGACCC+CGG + chr1_3:30072730-30072749 None:intergenic 50.0%
TCTCATAGGACCATGAGTGG+AGG - chr1_3:30072912-30072931 Msa0113910:intron 50.0%
TCCAGATCCAGCAGCAGTTA+CGG + chr1_3:30072942-30072961 None:intergenic 50.0%
GAGAGATATCTCGTCAGCAG+TGG - chr1_3:30072983-30073002 Msa0113910:intron 50.0%
ACAGACAGGGATGTTCAAGC+GGG - chr1_3:30073799-30073818 Msa0113910:intron 50.0%
ATATGAGCATCACAGGGCAC+TGG + chr1_3:30074338-30074357 None:intergenic 50.0%
GCCCTGTGATGCTCATATGT+CGG - chr1_3:30074340-30074359 Msa0113910:intron 50.0%
CCAGTTAGTGGGATAAGGCT+TGG + chr1_3:30074565-30074584 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAC+TGG - chr1_3:30074562-30074581 Msa0113910:CDS 50.0%
CTTATCCCACTAACTGGGGT+CGG - chr1_3:30074568-30074587 Msa0113910:CDS 50.0%
TGGTGGAAAATAGGCTCAGG+TGG + chr1_3:30074749-30074768 None:intergenic 50.0%
! CTCTGAAGGAGCATAGCTCT+GGG + chr1_3:30075087-30075106 None:intergenic 50.0%
! TCTCTGAAGGAGCATAGCTC+TGG + chr1_3:30075088-30075107 None:intergenic 50.0%
ACTCCAACTCAGTCTGATGC+TGG - chr1_3:30075137-30075156 Msa0113910:intron 50.0%
CTCCAACTCAGTCTGATGCT+GGG - chr1_3:30075138-30075157 Msa0113910:intron 50.0%
TCCAACTCAGTCTGATGCTG+GGG - chr1_3:30075139-30075158 Msa0113910:intron 50.0%
TACCGTTAAGCTCCACTCCA+AGG - chr1_3:30075171-30075190 Msa0113910:intron 50.0%
!! CCAGCTGCTTCTGCTATTTC+TGG + chr1_3:30075475-30075494 None:intergenic 50.0%
CCAGAAATAGCAGAAGCAGC+TGG - chr1_3:30075472-30075491 Msa0113910:intron 50.0%
AGCAGAAGCAGCTGGAATCA+TGG - chr1_3:30075480-30075499 Msa0113910:intron 50.0%
GCAGAAGCAGCTGGAATCAT+GGG - chr1_3:30075481-30075500 Msa0113910:intron 50.0%
!! GGCCATTGTGACTTGCTTCA+TGG - chr1_3:30075739-30075758 Msa0113910:intron 50.0%
CATTGCCTTCAACGAGAAGC+TGG + chr1_3:30076093-30076112 None:intergenic 50.0%
GCTTCTCGTTGAAGGCAATG+TGG - chr1_3:30076093-30076112 Msa0113910:CDS 50.0%
TCACACCCTGTCATCATCCA+AGG - chr1_3:30076125-30076144 Msa0113910:CDS 50.0%
ATTTCCACTGTAACTGCGGC+GGG - chr1_3:30076282-30076301 Msa0113910:five_prime_UTR 50.0%
GTGACACGGTGGTTGTGAGT+GGG + chr1_3:30067674-30067693 None:intergenic 55.0%
GAGAGGAAGCAGTGGTGACA+CGG + chr1_3:30067688-30067707 None:intergenic 55.0%
TGAGGAGAGAGAGGAAGCAG+TGG + chr1_3:30067696-30067715 None:intergenic 55.0%
!! GGAGGAAGAAGTGTCGGAAG+AGG + chr1_3:30067813-30067832 None:intergenic 55.0%
! ACTCCCCCGGACCGTTTTAT+AGG + chr1_3:30068785-30068804 None:intergenic 55.0%
CCAAATGGGTGGTGTTCCTG+GGG - chr1_3:30069108-30069127 Msa0113910:intron 55.0%
CAAATGGGTGGTGTTCCTGG+GGG - chr1_3:30069109-30069128 Msa0113910:intron 55.0%
TCAGGTCCAGTAATCCCGTC+TGG + chr1_3:30069178-30069197 None:intergenic 55.0%
TCTCAAACGCACAGTGGCAG+TGG + chr1_3:30070722-30070741 None:intergenic 55.0%
CAAGGCTCTCAAACGCACAG+TGG + chr1_3:30070728-30070747 None:intergenic 55.0%
GAGTCAGTGCTTGAGGCCAA+AGG - chr1_3:30071483-30071502 Msa0113910:intron 55.0%
!! TGTTCTTAAGGAGTGCCCCG+GGG - chr1_3:30072710-30072729 Msa0113910:intron 55.0%
AATGCTAACAAGCGACCCCG+GGG + chr1_3:30072728-30072747 None:intergenic 55.0%
ACTGCCGAGGCCCTATGTTA+AGG - chr1_3:30072875-30072894 Msa0113910:intron 55.0%
TTACGGCTTGCCTCCACTCA+TGG + chr1_3:30072925-30072944 None:intergenic 55.0%
CGACCCCAGTTAGTGGGATA+AGG + chr1_3:30074570-30074589 None:intergenic 55.0%
TGTAGCCGACCCCAGTTAGT+GGG + chr1_3:30074576-30074595 None:intergenic 55.0%
ATGTAGCCGACCCCAGTTAG+TGG + chr1_3:30074577-30074596 None:intergenic 55.0%
ACTAACTGGGGTCGGCTACA+TGG - chr1_3:30074576-30074595 Msa0113910:CDS 55.0%
TCCCCAGCATCAGACTGAGT+TGG + chr1_3:30075143-30075162 None:intergenic 55.0%
ACACGGTGGTTGTGAGTGGG+AGG + chr1_3:30067671-30067690 None:intergenic 60.0%
GGTGACACGGTGGTTGTGAG+TGG + chr1_3:30067675-30067694 None:intergenic 60.0%
AGGAAGCAGTGGTGACACGG+TGG + chr1_3:30067685-30067704 None:intergenic 60.0%
TGAACCTGGTGAGGCTACGG+AGG + chr1_3:30067834-30067853 None:intergenic 60.0%
CCCCAGGAACACCACCCATT+TGG + chr1_3:30069111-30069130 None:intergenic 60.0%
TGCGACGGCAAGCTGAACGT+TGG - chr1_3:30069307-30069326 Msa0113910:intron 60.0%
GCGACGGCAAGCTGAACGTT+GGG - chr1_3:30069308-30069327 Msa0113910:intron 60.0%
CGACGGCAAGCTGAACGTTG+GGG - chr1_3:30069309-30069328 Msa0113910:intron 60.0%
AGGGGGTGATACAGCCACAG+AGG - chr1_3:30069944-30069963 Msa0113910:intron 60.0%
TGGGGAGGAGTCAGTGCTTG+AGG - chr1_3:30071476-30071495 Msa0113910:intron 60.0%
AGGCAAGCCGTAACTGCTGC+TGG - chr1_3:30072932-30072951 Msa0113910:intron 60.0%
GCCGTAACTGCTGCTGGATC+TGG - chr1_3:30072938-30072957 Msa0113910:intron 60.0%
CACCGACATGTGGTCCGTGT+CGG - chr1_3:30074054-30074073 Msa0113910:CDS 60.0%
GTCCGACACGGACCACATGT+CGG + chr1_3:30074059-30074078 None:intergenic 60.0%
!! GAAGGAGCATAGCTCTGGGC+AGG + chr1_3:30075083-30075102 None:intergenic 60.0%
AACTGCGGCGGGACAGAATC+TGG - chr1_3:30076293-30076312 Msa0113910:five_prime_UTR 60.0%
TCCTCCTCCGTAGCCTCACC+AGG - chr1_3:30067827-30067846 Msa0113910:three_prime_UTR 65.0%
ACCTGGTGAGGCTACGGAGG+AGG + chr1_3:30067831-30067850 None:intergenic 65.0%
CTGTCCCGCCGCAGTTACAG+TGG + chr1_3:30076289-30076308 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 30067585 30076316 30067585 ID=Msa0113910;Name=Msa0113910
chr1_3 mRNA 30067585 30076316 30067585 ID=Msa0113910-mRNA-1;Parent=Msa0113910;Name=Msa0113910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=41|1|1|1|1|1|10|446|524
chr1_3 exon 30067585 30068091 30067585 ID=Msa0113910-mRNA-1:exon:9986;Parent=Msa0113910-mRNA-1
chr1_3 exon 30068356 30068486 30068356 ID=Msa0113910-mRNA-1:exon:9985;Parent=Msa0113910-mRNA-1
chr1_3 exon 30069801 30069905 30069801 ID=Msa0113910-mRNA-1:exon:9984;Parent=Msa0113910-mRNA-1
chr1_3 exon 30070046 30070132 30070046 ID=Msa0113910-mRNA-1:exon:9983;Parent=Msa0113910-mRNA-1
chr1_3 exon 30070874 30070981 30070874 ID=Msa0113910-mRNA-1:exon:9982;Parent=Msa0113910-mRNA-1
chr1_3 exon 30072254 30072533 30072254 ID=Msa0113910-mRNA-1:exon:9981;Parent=Msa0113910-mRNA-1
chr1_3 exon 30073847 30074112 30073847 ID=Msa0113910-mRNA-1:exon:9980;Parent=Msa0113910-mRNA-1
chr1_3 exon 30074491 30074596 30074491 ID=Msa0113910-mRNA-1:exon:9979;Parent=Msa0113910-mRNA-1
chr1_3 exon 30074692 30074899 30074692 ID=Msa0113910-mRNA-1:exon:9978;Parent=Msa0113910-mRNA-1
chr1_3 exon 30076053 30076316 30076053 ID=Msa0113910-mRNA-1:exon:9977;Parent=Msa0113910-mRNA-1
chr1_3 five_prime_UTR 30076276 30076316 30076276 ID=Msa0113910-mRNA-1:five_prime_utr;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30076053 30076275 30076053 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30074692 30074899 30074692 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30074491 30074596 30074491 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30073847 30074112 30073847 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30072254 30072533 30072254 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30070874 30070981 30070874 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30070046 30070132 30070046 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30069801 30069905 30069801 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30068356 30068486 30068356 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 CDS 30068031 30068091 30068031 ID=Msa0113910-mRNA-1:cds;Parent=Msa0113910-mRNA-1
chr1_3 three_prime_UTR 30067585 30068030 30067585 ID=Msa0113910-mRNA-1:three_prime_utr;Parent=Msa0113910-mRNA-1
Gene Sequence

>Msa0113910

ATGGTTACTGCGAAGATAGGACTCTTCGGAGTGGCAACACTTCCTCCCACTCACAACCACCGTGTCACCACTGCTTCCTCTCTCTCCTCACCTTCTCATCATCGTTTCATCTTCATCAACTCACGCCGCTCTCTTCGTTCTCGTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCACACTCCGAGCCTCTTCCGACACTTCTTCCTCCTCCGTAGCCTCACCAGGTAACGCAGTTGAAAATGTGGTAATTATAGGTTCAGGTCCTGCAGGATACACAGCAGCAATATATGCTGCACGAGCCAATTTGAAACCCGTAGTGTTCGAGGGTTACCAAATGGGTGGTGTTCCTGGGGGACAATTGATGACTACAACTGAAGTAGAGAACTTTCCAGGATTTCCAGACGGGATTACTGGACCTGATCTAATGGACAGGATGCGACGGCAAGCTGAACGTTGGGGAGCAGAATTGCATCATGAAGATGTTGAAGCTATTGATGTGAAGACTAGTCCTTTTACTGTCCAAAGCAGTGAACGTAAGGTTAAGAGCCATACTGTAATTATTGCCACTGGAGCAACTGCAAAACGACTTAGGCTACCCAGAGAAGATGAATTTTGGAGCAGAGGAATTAGTGCTTGTGCAATTTGTGATGGAGCATCACCTCTCTTCAAGGGTCAAATTCTTGCTGTCGTTGGAGGGGGTGATACAGCCACAGAGGAAGCATTATATTTGACAAAATATGCTCGTCATGTTCACTTACTTGTACGTCGAGACCAACTAAGGGCTTCTAAAGCCATGCAAGATAGAGTGTATGACAATCCAAATGTCACTGTGCACTTCAATACAGAGACTGTGGATATTGTGAGCAATACAAAAGGACAGATGTCTGGCATTTTAGTAAGAAAGCTTGATAGTGGGGAGGAGTCAGTGCTTGAGGCCAAAGGGCTATTCTACGGCATAGGCCATTCACCAAATACTCAACTGTTGAGAGGCCAAGTTGAACTTGACCAGTCTGGCTACTTACTAGTCAAAGAGGGTACTGCAAAAACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTGCAGGACCATGAGTGGAGGCAAGCCGTAACTGCTGCTGGATCTGGATGTATTGCAGCTTTATCAGTTGAGAGATATCTCGTCAGCAGTGGTCTTCTTATAGAGTTCCATCAGCCAAAACATGAAGAGGTTAAGAAGGAATTAACAGACAGGGATGTTCAAGCGGGCTTTGACATTACACTTACAAAGCATAAGGGGCAGTATGCTCTGCGAAAATTGTACCATGATAGTCCAAGGCTTATATGTGTATTATACACGTCACCGACATGTGGTCCGTGTCGGACATTGAAGCCAATCCTCAGTAAGGTAATTGATGAATATGATCAGAGTGTACATTTTGTTGAAATTGATATAGAGGAAGATCCAGAAATAGCAGAAGCAGCTGGAATCATGGGTACTCCGTGTGTGCAGTTCTTTAAAAACAAGGAGAATCTTAAGACTGTTTCAGGAGTTAAAATGAAGAGAGAATACCGAGAATTCATCGAGGCAAATATATAG

Protein sequence

>Msa0113910

MVTAKIGLFGVATLPPTHNHRVTTASSLSSPSHHRFIFINSRRSLRSRSSSSSSSSSLTLRASSDTSSSSVASPGNAVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHHEDVEAIDVKTSPFTVQSSERKVKSHTVIIATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQILAVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQDRVYDNPNVTVHFNTETVDIVSNTKGQMSGILVRKLDSGEESVLEAKGLFYGIGHSPNTQLLRGQVELDQSGYLLVKEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVSSGLLIEFHQPKHEEVKKELTDRDVQAGFDITLTKHKGQYALRKLYHDSPRLICVLYTSPTCGPCRTLKPILSKVIDEYDQSVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKENLKTVSGVKMKREYREFIEANI*