AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712580 MtrunA17_Chr5g0397211 97.425 233 6 0 1 233 1 233 8.74e-165 454
Msa0712580 MtrunA17_Chr7g0234811 72.277 101 28 0 1 101 1 101 7.52e-42 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712580 AT1G63970.1 83.237 173 29 0 61 233 59 231 1.63e-105 304
Msa0712580 AT1G63970.2 81.818 99 18 0 61 159 59 157 3.47e-56 177

Find 80 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGTTATCCTTTAATTAT+TGG 0.154047 5_1:+4435291 Msa0712580:CDS
TTAATTCCACCAATAATTAA+AGG 0.221109 5_1:-4435300 None:intergenic
CAGTATATTTCGGTGTTAAA+AGG 0.253460 5_1:+4438674 Msa0712580:three_prime_UTR
TCACTGTTTGTTTCAGCTTC+AGG 0.284381 5_1:+4435156 Msa0712580:CDS
TTGAGTAGATCATGTTATAT+TGG 0.285529 5_1:+4438498 Msa0712580:three_prime_UTR
CGCTTCTGTGGTAAATATAA+AGG 0.303097 5_1:+4438325 Msa0712580:CDS
ATTCTAGTTGCAGTATATTT+CGG 0.321836 5_1:+4438664 Msa0712580:three_prime_UTR
AAAGAATAAGAGAATGGAAT+TGG 0.329681 5_1:-4435093 None:intergenic
ACTAGAATGGTAGAAAATTC+TGG 0.334061 5_1:-4438649 None:intergenic
AATGATCACAACAACCAAAA+TGG 0.346987 5_1:-4438611 None:intergenic
CATGAGGCAGGTTATGATAT+TGG 0.350566 5_1:+4438209 Msa0712580:CDS
TGGTTGGTTGGTTGGTTGGT+TGG 0.371628 5_1:-4435002 None:intergenic
GCTTTAGGTCTTCCTGATAT+AGG 0.372829 5_1:+4436245 Msa0712580:CDS
ACAAAATCTTATAGATTGTC+CGG 0.378334 5_1:+4438547 Msa0712580:three_prime_UTR
GAAGAAATGACAGTGGAATC+TGG 0.388485 5_1:+4438421 Msa0712580:exon
TGGAATTGGGTGAGAAGATT+TGG 0.392377 5_1:-4435079 None:intergenic
TCCTTGTGTGGGCTTAGTTT+CGG 0.392429 5_1:-4438263 None:intergenic
TTTGAAGGAGTAGCGGAGAT+TGG 0.393763 5_1:-4435219 None:intergenic
GACATGGTTGGTTGGTTGGT+TGG 0.427570 5_1:-4435006 None:intergenic
AAGAATAAGAGAATGGAATT+GGG 0.439995 5_1:-4435092 None:intergenic
GTGGAAGGGTTGTGATTCTT+CGG 0.447373 5_1:+4436295 Msa0712580:CDS
GGTTATCCTTTAATTATTGG+TGG 0.460157 5_1:+4435294 Msa0712580:CDS
AGAATATACTCACAGATTCA+TGG 0.463953 5_1:-4436325 None:intergenic
CATGAAAAGGTTGATAGCCT+TGG 0.468863 5_1:+4438356 Msa0712580:CDS
GATCACTGTGTTGGTTTAAA+CGG 0.470255 5_1:+4438697 Msa0712580:three_prime_UTR
AGTATATTTCGGTGTTAAAA+GGG 0.471198 5_1:+4438675 Msa0712580:three_prime_UTR
CCCACACAAGGATGCTATCA+AGG 0.475088 5_1:+4438274 Msa0712580:CDS
TTGGTTGGTTGTTGAAGTTA+AGG 0.475515 5_1:-4434987 None:intergenic
AGAGGAAAAGAATAAGAGAA+TGG 0.478928 5_1:-4435099 None:intergenic
AAACCATGGCCAACCCGAAA+AGG 0.483370 5_1:-4435249 None:intergenic
GATTTGGTGGGTGTTGTGAA+TGG 0.484659 5_1:-4435063 None:intergenic
GCCTTGATAGCATCCTTGTG+TGG 0.485497 5_1:-4438275 None:intergenic
TCCAAGCAGTGCAGATAAGT+TGG 0.486196 5_1:-4438297 None:intergenic
TGAAGACATGGTTGGTTGGT+TGG 0.489141 5_1:-4435010 None:intergenic
TTCCACTTAGGATCAGAATC+AGG 0.496430 5_1:-4436278 None:intergenic
ATTTGGTGGGTGTTGTGAAT+GGG 0.497158 5_1:-4435062 None:intergenic
GACCTTCATCGATTGGAACC+TGG 0.499572 5_1:+4435273 Msa0712580:CDS
GTCGATTTCAATTGAAGTCG+TGG 0.502549 5_1:-4435190 None:intergenic
CCTTGATAGCATCCTTGTGT+GGG 0.507271 5_1:-4438274 None:intergenic
CGAAAAGGAAGAACCTTTGA+AGG 0.510185 5_1:-4435234 None:intergenic
GAAATATACTGCAACTAGAA+TGG 0.510270 5_1:-4438662 None:intergenic
ATTAATATACCTCATGATAG+AGG 0.512773 5_1:+4435318 Msa0712580:CDS
GCCAACTTATCTGCACTGCT+TGG 0.513880 5_1:+4438296 Msa0712580:CDS
TCGATTTCAATTGAAGTCGT+GGG 0.534187 5_1:-4435189 None:intergenic
TTCCTGATTCTGATCCTAAG+TGG 0.534340 5_1:+4436276 Msa0712580:CDS
ATGATTTGAGATGGAGGGTA+TGG 0.536370 5_1:-4435128 None:intergenic
TGGAATCTGGAAATATTATG+AGG 0.540881 5_1:+4438434 Msa0712580:three_prime_UTR
GTCAGACTTATGCATGAGGC+AGG 0.542152 5_1:+4438197 Msa0712580:CDS
GTTAAAAGGGATCACTGTGT+TGG 0.542918 5_1:+4438688 Msa0712580:three_prime_UTR
CCAATAATTAAAGGATAACC+AGG 0.547141 5_1:-4435291 None:intergenic
GAATCACAACCCTTCCACTT+AGG 0.553850 5_1:-4436290 None:intergenic
TGATTCTGATCCTAAGTGGA+AGG 0.553947 5_1:+4436280 Msa0712580:CDS
AATCTCCGCTACTCCTTCAA+AGG 0.556988 5_1:+4435221 Msa0712580:CDS
TAAAACAATGATTAGCAGCC+CGG 0.560681 5_1:-4438566 None:intergenic
AACCAGGTTCCAATCGATGA+AGG 0.565616 5_1:-4435275 None:intergenic
CAAAATCTTATAGATTGTCC+GGG 0.572319 5_1:+4438548 Msa0712580:three_prime_UTR
CACTGTGTTGGTTTAAACGG+TGG 0.578999 5_1:+4438700 Msa0712580:three_prime_UTR
TGGAGGGTATGGTGTTTGAG+AGG 0.579851 5_1:-4435117 None:intergenic
GGTTGCGAGGCTCATTCTGA+TGG 0.591970 5_1:+4435339 Msa0712580:CDS
GGTGGGTGTTGTGAATGGGA+AGG 0.594415 5_1:-4435058 None:intergenic
AATTGGGTGAGAAGATTTGG+TGG 0.594739 5_1:-4435076 None:intergenic
ATTGGGTGAGAAGATTTGGT+GGG 0.596035 5_1:-4435075 None:intergenic
GCTTGGAGTTGACGCTTCTG+TGG 0.600936 5_1:+4438313 Msa0712580:CDS
AAGATGAAGACATGGTTGGT+TGG 0.608890 5_1:-4435014 None:intergenic
GGATGTTCTGCTTCACTGCG+TGG 0.611052 5_1:+4436205 Msa0712580:CDS
AAGAACCTTTGAAGGAGTAG+CGG 0.614741 5_1:-4435226 None:intergenic
TGGTGATGATTTGAGATGGA+GGG 0.617114 5_1:-4435133 None:intergenic
ACCTCATGATAGAGGTTGCG+AGG 0.621758 5_1:+4435326 Msa0712580:CDS
GCCGAAACTAAGCCCACACA+AGG 0.626457 5_1:+4438262 Msa0712580:CDS
ATGCAACATTGATACTTCAG+AGG 0.627600 5_1:+4438240 Msa0712580:CDS
AGAGAAGATGAAGACATGGT+TGG 0.627751 5_1:-4435018 None:intergenic
GATTCTGATCCTAAGTGGAA+GGG 0.630398 5_1:+4436281 Msa0712580:CDS
ATCGATGAAGGTCAAAACCA+TGG 0.631860 5_1:-4435263 None:intergenic
GTGATGGTGATGATTTGAGA+TGG 0.635547 5_1:-4435137 None:intergenic
ATGGTGATGATTTGAGATGG+AGG 0.646685 5_1:-4435134 None:intergenic
GCCTCGCAACCTCTATCATG+AGG 0.647110 5_1:-4435327 None:intergenic
TTCTAATGAAGAAATGACAG+TGG 0.656226 5_1:+4438414 Msa0712580:exon
TGTTAGAGAAGATGAAGACA+TGG 0.663229 5_1:-4435022 None:intergenic
GAAGCTGAAACAAACAGTGA+TGG 0.680351 5_1:-4435153 None:intergenic
ACAGGTCAGACTTATGCATG+AGG 0.696663 5_1:+4438193 Msa0712580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATTATAAAAATGAAAA+GGG - chr5_1:4435387-4435406 None:intergenic 10.0%
!! AAAAGATTATAAAAATGAAA+AGG - chr5_1:4435388-4435407 None:intergenic 10.0%
!! TAATTTCGAAATATTATTTA+GGG + chr5_1:4435523-4435542 Msa0712580:intron 10.0%
!! AAGATTATAAAAATGAAAAG+GGG - chr5_1:4435386-4435405 None:intergenic 15.0%
!! GTAATTTCGAAATATTATTT+AGG + chr5_1:4435522-4435541 Msa0712580:intron 15.0%
!! AATTTAGGGAATATATTAAT+AGG + chr5_1:4436445-4436464 Msa0712580:intron 15.0%
!!! ATTTTTCATTCTTCTAATTT+AGG + chr5_1:4436735-4436754 Msa0712580:intron 15.0%
!!! TTTTTCATTCTTCTAATTTA+GGG + chr5_1:4436736-4436755 Msa0712580:intron 15.0%
!! AAATTATTACTGAGTTAAAA+GGG + chr5_1:4436826-4436845 Msa0712580:intron 15.0%
!!! TTTTCCTTGTAAAAATTTTT+TGG + chr5_1:4437385-4437404 Msa0712580:intron 15.0%
!!! TTTCCTTGTAAAAATTTTTT+GGG + chr5_1:4437386-4437405 Msa0712580:intron 15.0%
!!! TTCTTTTTTATGTAGATATA+TGG + chr5_1:4437444-4437463 Msa0712580:intron 15.0%
!!! TCTTTTTTATGTAGATATAT+GGG + chr5_1:4437445-4437464 Msa0712580:intron 15.0%
!! CAAAATTAATACAATAAAAG+AGG - chr5_1:4437987-4438006 None:intergenic 15.0%
!!! CTCTTTTATTGTATTAATTT+TGG + chr5_1:4437985-4438004 Msa0712580:intron 15.0%
!!! TATCTATACTTGATATTTTT+AGG + chr5_1:4438142-4438161 Msa0712580:intron 15.0%
!!! ATCTATACTTGATATTTTTA+GGG + chr5_1:4438143-4438162 Msa0712580:intron 15.0%
!!! ATATGTTATGATTTTATTAC+AGG + chr5_1:4438175-4438194 Msa0712580:intron 15.0%
!! TACTGTTGTGAAAAAAAAAA+TGG - chr5_1:4434963-4434982 None:intergenic 20.0%
!! TTAATTCCACCAATAATTAA+AGG - chr5_1:4435303-4435322 None:intergenic 20.0%
!! AATTGAGTAAATACTCAATT+TGG - chr5_1:4436137-4436156 None:intergenic 20.0%
!! AATTGAGAAAATAAAGTAGA+AGG - chr5_1:4436364-4436383 None:intergenic 20.0%
!! ATTGAAATACAGTATGATTT+AGG + chr5_1:4436381-4436400 Msa0712580:intron 20.0%
!!! TTCTAATGTTGTTTGAATTT+AGG + chr5_1:4436430-4436449 Msa0712580:intron 20.0%
!!! TCTAATGTTGTTTGAATTTA+GGG + chr5_1:4436431-4436450 Msa0712580:intron 20.0%
!! GAAATTATTACTGAGTTAAA+AGG + chr5_1:4436825-4436844 Msa0712580:intron 20.0%
!! ATATACCTTGTATGTATATA+AGG + chr5_1:4436960-4436979 Msa0712580:intron 20.0%
!! TATACCTTGTATGTATATAA+GGG + chr5_1:4436961-4436980 Msa0712580:intron 20.0%
!! AAACCAATCAGTTTAAATAT+GGG - chr5_1:4437270-4437289 None:intergenic 20.0%
!! ATATATGCCTGTTTAAATAA+GGG - chr5_1:4437300-4437319 None:intergenic 20.0%
!! AATATATGCCTGTTTAAATA+AGG - chr5_1:4437301-4437320 None:intergenic 20.0%
!!! TTACCCAAAAAATTTTTACA+AGG - chr5_1:4437392-4437411 None:intergenic 20.0%
!!! GTATCTGAATTGTTTAAAAT+AGG - chr5_1:4437697-4437716 None:intergenic 20.0%
!!! AAAAATAGCAAAGTTTTGTT+TGG - chr5_1:4437904-4437923 None:intergenic 20.0%
!! ATGGTTGTACAAATTATATT+TGG + chr5_1:4438075-4438094 Msa0712580:intron 20.0%
! AAGAATAAGAGAATGGAATT+GGG - chr5_1:4435095-4435114 None:intergenic 25.0%
! AAAGAATAAGAGAATGGAAT+TGG - chr5_1:4435096-4435115 None:intergenic 25.0%
! ATTAATATACCTCATGATAG+AGG + chr5_1:4435318-4435337 Msa0712580:CDS 25.0%
!!! GTAGTGTTTTGAAGATTATA+CGG + chr5_1:4435661-4435680 Msa0712580:intron 25.0%
! CTCAAAATTATTATCGACAT+CGG + chr5_1:4435843-4435862 Msa0712580:intron 25.0%
! CAAGATAGTTTATGAGAAAA+CGG - chr5_1:4436004-4436023 None:intergenic 25.0%
!!! TTTATTTTCATAAGCTGTTC+TGG + chr5_1:4436054-4436073 Msa0712580:intron 25.0%
! AAAAAATAAGCCAATCCAAA+TGG + chr5_1:4436084-4436103 Msa0712580:intron 25.0%
! AAAAATAAGCCAATCCAAAT+GGG + chr5_1:4436085-4436104 Msa0712580:intron 25.0%
!! ATGATGATGAAATATGAACA+GGG + chr5_1:4436183-4436202 Msa0712580:intron 25.0%
! AAATCATTATGGTGAACATT+TGG - chr5_1:4436474-4436493 None:intergenic 25.0%
! ACAGAACAAACAAATCATTA+TGG - chr5_1:4436485-4436504 None:intergenic 25.0%
! CCATGAATAATTCATTGAAA+TGG - chr5_1:4436522-4436541 None:intergenic 25.0%
! CCATTTCAATGAATTATTCA+TGG + chr5_1:4436519-4436538 Msa0712580:intron 25.0%
! ACTTTATTATTGAACGAGTT+TGG + chr5_1:4436779-4436798 Msa0712580:intron 25.0%
! AAATAATGACATGAGTTAAC+AGG + chr5_1:4436888-4436907 Msa0712580:intron 25.0%
! ATACATACAAGGTATATGAT+TGG - chr5_1:4436957-4436976 None:intergenic 25.0%
!!! CTGTGTTCAGTTTTTTTAAA+GGG + chr5_1:4436990-4437009 Msa0712580:intron 25.0%
!!! TGTGTTCAGTTTTTTTAAAG+GGG + chr5_1:4436991-4437010 Msa0712580:intron 25.0%
!!! CTTTTTTGTTTGGTACAATA+CGG - chr5_1:4437163-4437182 None:intergenic 25.0%
!!! AAACATCTCTCTTTTTTGTT+TGG - chr5_1:4437173-4437192 None:intergenic 25.0%
! CAAACCAATCAGTTTAAATA+TGG - chr5_1:4437271-4437290 None:intergenic 25.0%
!!! GTGAATAAAAGCTTTTTCTT+CGG - chr5_1:4437642-4437661 None:intergenic 25.0%
! TTTAATAACTGCTAAACACA+TGG - chr5_1:4438023-4438042 None:intergenic 25.0%
! TTGAGTAGATCATGTTATAT+TGG + chr5_1:4438498-4438517 Msa0712580:three_prime_UTR 25.0%
! ACAAAATCTTATAGATTGTC+CGG + chr5_1:4438547-4438566 Msa0712580:three_prime_UTR 25.0%
!! GTCAAATTTTGTAACCATTT+TGG + chr5_1:4438597-4438616 Msa0712580:three_prime_UTR 25.0%
!! ATTCTAGTTGCAGTATATTT+CGG + chr5_1:4438664-4438683 Msa0712580:three_prime_UTR 25.0%
!!! AGTATATTTCGGTGTTAAAA+GGG + chr5_1:4438675-4438694 Msa0712580:three_prime_UTR 25.0%
AGAGGAAAAGAATAAGAGAA+TGG - chr5_1:4435102-4435121 None:intergenic 30.0%
CCAATAATTAAAGGATAACC+AGG - chr5_1:4435294-4435313 None:intergenic 30.0%
CCTGGTTATCCTTTAATTAT+TGG + chr5_1:4435291-4435310 Msa0712580:CDS 30.0%
GGTTATCCTTTAATTATTGG+TGG + chr5_1:4435294-4435313 Msa0712580:CDS 30.0%
TATAAAAATGAAAAGGGGCA+TGG - chr5_1:4435381-4435400 None:intergenic 30.0%
CGAAATTACAAAAACAGCAT+AGG - chr5_1:4435511-4435530 None:intergenic 30.0%
!! ATAAGTTAGTTGATAGTGGA+TGG + chr5_1:4435583-4435602 Msa0712580:intron 30.0%
TCCATTGTAAGTTTGTGATT+AGG + chr5_1:4435693-4435712 Msa0712580:intron 30.0%
CCATTGTAAGTTTGTGATTA+GGG + chr5_1:4435694-4435713 Msa0712580:intron 30.0%
CATTGTAAGTTTGTGATTAG+GGG + chr5_1:4435695-4435714 Msa0712580:intron 30.0%
AATAAGCCAATCCAAACAAA+CGG - chr5_1:4435721-4435740 None:intergenic 30.0%
TCAATTTGGTATAGAGTTGT+TGG - chr5_1:4436123-4436142 None:intergenic 30.0%
! CATGATGATGAAATATGAAC+AGG + chr5_1:4436182-4436201 Msa0712580:intron 30.0%
! TGATGATGAAATATGAACAG+GGG + chr5_1:4436184-4436203 Msa0712580:intron 30.0%
AGAATATACTCACAGATTCA+TGG - chr5_1:4436328-4436347 None:intergenic 30.0%
CTGAAAACACAATTACACTA+AGG - chr5_1:4436407-4436426 None:intergenic 30.0%
ATGCAGTGTTAGAACTTAAT+TGG + chr5_1:4436573-4436592 Msa0712580:intron 30.0%
TGCTAAAGTATAAGCATGAT+AGG + chr5_1:4436597-4436616 Msa0712580:intron 30.0%
AAAGTATAAGCATGATAGGA+AGG + chr5_1:4436601-4436620 Msa0712580:intron 30.0%
CGGATTGTTAGAATATAAGA+TGG + chr5_1:4436672-4436691 Msa0712580:intron 30.0%
TGAAAAATAGATGTAGCAGA+TGG - chr5_1:4436723-4436742 None:intergenic 30.0%
ATTACTGAGTTAAAAGGGTA+AGG + chr5_1:4436831-4436850 Msa0712580:intron 30.0%
GATTCCCTTATATACATACA+AGG - chr5_1:4436968-4436987 None:intergenic 30.0%
!!! GCTGTGTTCAGTTTTTTTAA+AGG + chr5_1:4436989-4437008 Msa0712580:intron 30.0%
!!! TTCAGTTTTTTTAAAGGGGA+CGG + chr5_1:4436995-4437014 Msa0712580:intron 30.0%
AACATTTCGTGTGGTATTTA+AGG - chr5_1:4437085-4437104 None:intergenic 30.0%
TACCACACGAAATGTTAAAA+TGG + chr5_1:4437089-4437108 Msa0712580:intron 30.0%
! GCATAATCCCTTATTTAAAC+AGG + chr5_1:4437290-4437309 Msa0712580:intron 30.0%
CATACATATGTGAGTTCAAA+AGG + chr5_1:4437332-4437351 Msa0712580:intron 30.0%
AGTAAAACATGCACATTAGT+AGG - chr5_1:4437366-4437385 None:intergenic 30.0%
TTCATCAAACCCATTTAATC+CGG + chr5_1:4437484-4437503 Msa0712580:intron 30.0%
TGTCACAAACTAACATACAT+AGG + chr5_1:4437507-4437526 Msa0712580:intron 30.0%
!! TGAACTCATTCTCTACTTTT+TGG - chr5_1:4437782-4437801 None:intergenic 30.0%
AAAAGTAGAGAATGAGTTCA+AGG + chr5_1:4437782-4437801 Msa0712580:intron 30.0%
! GATTTTCTTTTGACGTATGA+TGG + chr5_1:4438056-4438075 Msa0712580:intron 30.0%
!!! GTTACTGAAAGTGTTTTCTT+AGG + chr5_1:4438097-4438116 Msa0712580:intron 30.0%
AAAGGCAAAAACTCATGAAA+AGG + chr5_1:4438343-4438362 Msa0712580:CDS 30.0%
! CTATACTTCTATTTTCTCCA+AGG - chr5_1:4438376-4438395 None:intergenic 30.0%
TTCTAATGAAGAAATGACAG+TGG + chr5_1:4438414-4438433 Msa0712580:exon 30.0%
TGGAATCTGGAAATATTATG+AGG + chr5_1:4438434-4438453 Msa0712580:three_prime_UTR 30.0%
CAAAATCTTATAGATTGTCC+GGG + chr5_1:4438548-4438567 Msa0712580:three_prime_UTR 30.0%
AATGATCACAACAACCAAAA+TGG - chr5_1:4438614-4438633 None:intergenic 30.0%
ACTAGAATGGTAGAAAATTC+TGG - chr5_1:4438652-4438671 None:intergenic 30.0%
GAAATATACTGCAACTAGAA+TGG - chr5_1:4438665-4438684 None:intergenic 30.0%
!! CAGTATATTTCGGTGTTAAA+AGG + chr5_1:4438674-4438693 Msa0712580:three_prime_UTR 30.0%
! TTGGTTGGTTGTTGAAGTTA+AGG - chr5_1:4434990-4435009 None:intergenic 35.0%
TGTTAGAGAAGATGAAGACA+TGG - chr5_1:4435025-4435044 None:intergenic 35.0%
TCGATTTCAATTGAAGTCGT+GGG - chr5_1:4435192-4435211 None:intergenic 35.0%
! CTTCAAAGGTTCTTCCTTTT+CGG + chr5_1:4435235-4435254 Msa0712580:CDS 35.0%
! TTCAAAGGTTCTTCCTTTTC+GGG + chr5_1:4435236-4435255 Msa0712580:CDS 35.0%
!! GTGGATAAGTTAGTTGATAG+TGG + chr5_1:4435579-4435598 Msa0712580:intron 35.0%
CCCTAATCACAAACTTACAA+TGG - chr5_1:4435697-4435716 None:intergenic 35.0%
ACATAGACACTCCACAAATT+AGG + chr5_1:4435750-4435769 Msa0712580:intron 35.0%
ATGAAGCACAAACATAGACA+CGG - chr5_1:4435884-4435903 None:intergenic 35.0%
GGAAAAATCTGACCTATATC+AGG - chr5_1:4436260-4436279 None:intergenic 35.0%
GGAAAGACATTGTCATTGTT+CGG + chr5_1:4436652-4436671 Msa0712580:intron 35.0%
! TTCTTCTAATTTAGGGTGCA+TGG + chr5_1:4436743-4436762 Msa0712580:intron 35.0%
!!! TCAGTTTTTTTAAAGGGGAC+GGG + chr5_1:4436996-4437015 Msa0712580:intron 35.0%
!! CACCATTTTAACATTTCGTG+TGG - chr5_1:4437094-4437113 None:intergenic 35.0%
AGGCCCATATTTAAACTGAT+TGG + chr5_1:4437264-4437283 Msa0712580:intron 35.0%
TTTGTGACACCGGATTAAAT+GGG - chr5_1:4437496-4437515 None:intergenic 35.0%
!! TGTATGTTAGTTTGTGACAC+CGG - chr5_1:4437506-4437525 None:intergenic 35.0%
CTAACATACATAGGATCACA+AGG + chr5_1:4437516-4437535 Msa0712580:intron 35.0%
ACAAGGTCAGCTATTTAACT+GGG + chr5_1:4437533-4437552 Msa0712580:intron 35.0%
TGTATCATGTGTGTATGTTG+AGG - chr5_1:4437602-4437621 None:intergenic 35.0%
CTTCGGAAATGACATATTTG+AGG - chr5_1:4437625-4437644 None:intergenic 35.0%
TCTCACTTCTGAATACTGTT+AGG - chr5_1:4437830-4437849 None:intergenic 35.0%
TATCAGTCAAGTGTGTAACA+GGG + chr5_1:4437858-4437877 Msa0712580:intron 35.0%
ATAAAAGAGGAGTCACTGTT+AGG - chr5_1:4437974-4437993 None:intergenic 35.0%
CTAAACACATGGTAAATGCA+GGG - chr5_1:4438012-4438031 None:intergenic 35.0%
ATGCAACATTGATACTTCAG+AGG + chr5_1:4438240-4438259 Msa0712580:CDS 35.0%
CGCTTCTGTGGTAAATATAA+AGG + chr5_1:4438325-4438344 Msa0712580:CDS 35.0%
TAAAACAATGATTAGCAGCC+CGG - chr5_1:4438569-4438588 None:intergenic 35.0%
!! GATCACTGTGTTGGTTTAAA+CGG + chr5_1:4438697-4438716 Msa0712580:three_prime_UTR 35.0%
AAGATGAAGACATGGTTGGT+TGG - chr5_1:4435017-4435036 None:intergenic 40.0%
AGAGAAGATGAAGACATGGT+TGG - chr5_1:4435021-4435040 None:intergenic 40.0%
! ATTTGGTGGGTGTTGTGAAT+GGG - chr5_1:4435065-4435084 None:intergenic 40.0%
! ATTGGGTGAGAAGATTTGGT+GGG - chr5_1:4435078-4435097 None:intergenic 40.0%
AATTGGGTGAGAAGATTTGG+TGG - chr5_1:4435079-4435098 None:intergenic 40.0%
TGGAATTGGGTGAGAAGATT+TGG - chr5_1:4435082-4435101 None:intergenic 40.0%
! ATGATTTGAGATGGAGGGTA+TGG - chr5_1:4435131-4435150 None:intergenic 40.0%
! TGGTGATGATTTGAGATGGA+GGG - chr5_1:4435136-4435155 None:intergenic 40.0%
! ATGGTGATGATTTGAGATGG+AGG - chr5_1:4435137-4435156 None:intergenic 40.0%
! GTGATGGTGATGATTTGAGA+TGG - chr5_1:4435140-4435159 None:intergenic 40.0%
GAAGCTGAAACAAACAGTGA+TGG - chr5_1:4435156-4435175 None:intergenic 40.0%
TCACTGTTTGTTTCAGCTTC+AGG + chr5_1:4435156-4435175 Msa0712580:CDS 40.0%
! GTCGATTTCAATTGAAGTCG+TGG - chr5_1:4435193-4435212 None:intergenic 40.0%
! AAGAACCTTTGAAGGAGTAG+CGG - chr5_1:4435229-4435248 None:intergenic 40.0%
CGAAAAGGAAGAACCTTTGA+AGG - chr5_1:4435237-4435256 None:intergenic 40.0%
ATCGATGAAGGTCAAAACCA+TGG - chr5_1:4435266-4435285 None:intergenic 40.0%
!!! TGGTTTTGACCTTCATCGAT+TGG + chr5_1:4435266-4435285 Msa0712580:CDS 40.0%
TTAGGGACTATGACTCTGTT+TGG + chr5_1:4435540-4435559 Msa0712580:intron 40.0%
CTCTGTTTGGTAGAAAGTAG+TGG + chr5_1:4435553-4435572 Msa0712580:intron 40.0%
!! TGGTAGAAAGTAGTGGATAG+TGG + chr5_1:4435560-4435579 Msa0712580:intron 40.0%
TCCACAAATTAGGTGTGTTC+CGG + chr5_1:4435760-4435779 Msa0712580:intron 40.0%
GTAATCATATGTGCCAGTGT+AGG - chr5_1:4435805-4435824 None:intergenic 40.0%
AGAGTTGTTGGCAAGATCTT+GGG - chr5_1:4436111-4436130 None:intergenic 40.0%
TAGAGTTGTTGGCAAGATCT+TGG - chr5_1:4436112-4436131 None:intergenic 40.0%
!! TGCGTGGTTGATGCAATTTT+AGG + chr5_1:4436221-4436240 Msa0712580:CDS 40.0%
!! GCGTGGTTGATGCAATTTTA+GGG + chr5_1:4436222-4436241 Msa0712580:CDS 40.0%
!! CGTGGTTGATGCAATTTTAG+GGG + chr5_1:4436223-4436242 Msa0712580:CDS 40.0%
!! GATGCAATTTTAGGGGCTTT+AGG + chr5_1:4436230-4436249 Msa0712580:CDS 40.0%
! GCTTTAGGTCTTCCTGATAT+AGG + chr5_1:4436245-4436264 Msa0712580:CDS 40.0%
TTCCTGATTCTGATCCTAAG+TGG + chr5_1:4436276-4436295 Msa0712580:CDS 40.0%
TTCCACTTAGGATCAGAATC+AGG - chr5_1:4436281-4436300 None:intergenic 40.0%
TGATTCTGATCCTAAGTGGA+AGG + chr5_1:4436280-4436299 Msa0712580:CDS 40.0%
GATTCTGATCCTAAGTGGAA+GGG + chr5_1:4436281-4436300 Msa0712580:CDS 40.0%
CTTAGAAGAGATTAGCGCTT+TGG + chr5_1:4436855-4436874 Msa0712580:intron 40.0%
ATTAGCGCTTTGGTTAACAG+TGG + chr5_1:4436865-4436884 Msa0712580:intron 40.0%
! TCTATTCGGTTCTAACTGAG+GGG - chr5_1:4437201-4437220 None:intergenic 40.0%
! GTCTATTCGGTTCTAACTGA+GGG - chr5_1:4437202-4437221 None:intergenic 40.0%
CATATGTGAGTTCAAAAGGC+CGG + chr5_1:4437336-4437355 Msa0712580:intron 40.0%
GTTTGTGACACCGGATTAAA+TGG - chr5_1:4437497-4437516 None:intergenic 40.0%
CACAAGGTCAGCTATTTAAC+TGG + chr5_1:4437532-4437551 Msa0712580:intron 40.0%
GTATGTTGAGGTGAGTACAA+GGG - chr5_1:4437590-4437609 None:intergenic 40.0%
TGTATGTTGAGGTGAGTACA+AGG - chr5_1:4437591-4437610 None:intergenic 40.0%
CTATCAGTCAAGTGTGTAAC+AGG + chr5_1:4437857-4437876 Msa0712580:intron 40.0%
GCTAAACACATGGTAAATGC+AGG - chr5_1:4438013-4438032 None:intergenic 40.0%
CATGAGGCAGGTTATGATAT+TGG + chr5_1:4438209-4438228 Msa0712580:CDS 40.0%
!! CATGAAAAGGTTGATAGCCT+TGG + chr5_1:4438356-4438375 Msa0712580:CDS 40.0%
GAAGAAATGACAGTGGAATC+TGG + chr5_1:4438421-4438440 Msa0712580:exon 40.0%
GTTAAAAGGGATCACTGTGT+TGG + chr5_1:4438688-4438707 Msa0712580:three_prime_UTR 40.0%
! TGAAGACATGGTTGGTTGGT+TGG - chr5_1:4435013-4435032 None:intergenic 45.0%
!! GATTTGGTGGGTGTTGTGAA+TGG - chr5_1:4435066-4435085 None:intergenic 45.0%
! TTTGAAGGAGTAGCGGAGAT+TGG - chr5_1:4435222-4435241 None:intergenic 45.0%
AATCTCCGCTACTCCTTCAA+AGG + chr5_1:4435221-4435240 Msa0712580:CDS 45.0%
!!! AAGGTTCTTCCTTTTCGGGT+TGG + chr5_1:4435240-4435259 Msa0712580:CDS 45.0%
AACCAGGTTCCAATCGATGA+AGG - chr5_1:4435278-4435297 None:intergenic 45.0%
GCAGATAAGCTAGCTGATAG+TGG + chr5_1:4435613-4435632 Msa0712580:intron 45.0%
ACCGGAACACACCTAATTTG+TGG - chr5_1:4435764-4435783 None:intergenic 45.0%
AATTAGGTGTGTTCCGGTGT+CGG + chr5_1:4435766-4435785 Msa0712580:intron 45.0%
ACAAACATAGACACGGACAC+GGG - chr5_1:4435877-4435896 None:intergenic 45.0%
CACAAACATAGACACGGACA+CGG - chr5_1:4435878-4435897 None:intergenic 45.0%
GAATCACAACCCTTCCACTT+AGG - chr5_1:4436293-4436312 None:intergenic 45.0%
GTGGAAGGGTTGTGATTCTT+CGG + chr5_1:4436295-4436314 Msa0712580:CDS 45.0%
! GAAGGTATGCCTTGCAATCA+GGG + chr5_1:4436619-4436638 Msa0712580:intron 45.0%
! GGTCTATTCGGTTCTAACTG+AGG - chr5_1:4437203-4437222 None:intergenic 45.0%
AGAACCGAATAGACCTGTAG+AGG + chr5_1:4437208-4437227 Msa0712580:intron 45.0%
AAATATGGGCCTATGCTGAC+TGG - chr5_1:4437256-4437275 None:intergenic 45.0%
ATGCACATTAGTAGGCAGAC+CGG - chr5_1:4437358-4437377 None:intergenic 45.0%
ACAAGGGCTAACGGTTGTTT+GGG - chr5_1:4437574-4437593 None:intergenic 45.0%
TACAAGGGCTAACGGTTGTT+TGG - chr5_1:4437575-4437594 None:intergenic 45.0%
ACAGGTCAGACTTATGCATG+AGG + chr5_1:4438193-4438212 Msa0712580:intron 45.0%
TCCTTGTGTGGGCTTAGTTT+CGG - chr5_1:4438266-4438285 None:intergenic 45.0%
! CCTTGATAGCATCCTTGTGT+GGG - chr5_1:4438277-4438296 None:intergenic 45.0%
TCCAAGCAGTGCAGATAAGT+TGG - chr5_1:4438300-4438319 None:intergenic 45.0%
!! CACTGTGTTGGTTTAAACGG+TGG + chr5_1:4438700-4438719 Msa0712580:three_prime_UTR 45.0%
! TGGTTGGTTGGTTGGTTGGT+TGG - chr5_1:4435001-4435020 None:intergenic 50.0%
! GACATGGTTGGTTGGTTGGT+TGG - chr5_1:4435009-4435028 None:intergenic 50.0%
! TGGAGGGTATGGTGTTTGAG+AGG - chr5_1:4435120-4435139 None:intergenic 50.0%
AAACCATGGCCAACCCGAAA+AGG - chr5_1:4435252-4435271 None:intergenic 50.0%
! GACCTTCATCGATTGGAACC+TGG + chr5_1:4435273-4435292 Msa0712580:CDS 50.0%
ACCTCATGATAGAGGTTGCG+AGG + chr5_1:4435326-4435345 Msa0712580:CDS 50.0%
GTGATTAGGGGCCGTTTGTT+TGG + chr5_1:4435707-4435726 Msa0712580:intron 50.0%
TAGGGGCCGTTTGTTTGGAT+TGG + chr5_1:4435712-4435731 Msa0712580:intron 50.0%
GATCTTGGGCCCATTTGGAT+TGG - chr5_1:4436097-4436116 None:intergenic 50.0%
! GGAAGGTATGCCTTGCAATC+AGG + chr5_1:4436618-4436637 Msa0712580:intron 50.0%
TTCCACTGTCCCTGATTGCA+AGG - chr5_1:4436631-4436650 None:intergenic 50.0%
TGCAATCAGGGACAGTGGAA+TGG + chr5_1:4436631-4436650 Msa0712580:intron 50.0%
ACCGAATAGACCTGTAGAGG+CGG + chr5_1:4437211-4437230 Msa0712580:intron 50.0%
GAGGTGAGTACAAGGGCTAA+CGG - chr5_1:4437583-4437602 None:intergenic 50.0%
GTCAGACTTATGCATGAGGC+AGG + chr5_1:4438197-4438216 Msa0712580:CDS 50.0%
CCCACACAAGGATGCTATCA+AGG + chr5_1:4438274-4438293 Msa0712580:CDS 50.0%
! GCCTTGATAGCATCCTTGTG+TGG - chr5_1:4438278-4438297 None:intergenic 50.0%
GCCAACTTATCTGCACTGCT+TGG + chr5_1:4438296-4438315 Msa0712580:CDS 50.0%
! GGTGGGTGTTGTGAATGGGA+AGG - chr5_1:4435061-4435080 None:intergenic 55.0%
!!! CTTCCTTTTCGGGTTGGCCA+TGG + chr5_1:4435246-4435265 Msa0712580:CDS 55.0%
GCCTCGCAACCTCTATCATG+AGG - chr5_1:4435330-4435349 None:intergenic 55.0%
GGTTGCGAGGCTCATTCTGA+TGG + chr5_1:4435339-4435358 Msa0712580:CDS 55.0%
ACACGCTTCGCTTCCTACAC+TGG + chr5_1:4435789-4435808 Msa0712580:intron 55.0%
GGCAAGATCTTGGGCCCATT+TGG - chr5_1:4436102-4436121 None:intergenic 55.0%
GGATGTTCTGCTTCACTGCG+TGG + chr5_1:4436205-4436224 Msa0712580:CDS 55.0%
TGCCTTGCAATCAGGGACAG+TGG + chr5_1:4436626-4436645 Msa0712580:intron 55.0%
TAAAGGGGACGGGAGAAGAG+AGG + chr5_1:4437006-4437025 Msa0712580:intron 55.0%
CCCGCCTCTACAGGTCTATT+CGG - chr5_1:4437215-4437234 None:intergenic 55.0%
CCGAATAGACCTGTAGAGGC+GGG + chr5_1:4437212-4437231 Msa0712580:intron 55.0%
GTATGCATACCCGCCTCTAC+AGG - chr5_1:4437224-4437243 None:intergenic 55.0%
GCCGAAACTAAGCCCACACA+AGG + chr5_1:4438262-4438281 Msa0712580:CDS 55.0%
GCTTGGAGTTGACGCTTCTG+TGG + chr5_1:4438313-4438332 Msa0712580:CDS 55.0%
AAGCGAAGCGTGTCCGACAC+CGG - chr5_1:4435782-4435801 None:intergenic 60.0%
! CTATGCTGACTGGTGCGAGC+TGG - chr5_1:4437246-4437265 None:intergenic 60.0%
CAGCTCGCACCAGTCAGCAT+AGG + chr5_1:4437244-4437263 Msa0712580:intron 60.0%
GGGGACGGGAGAAGAGAGGA+AGG + chr5_1:4437010-4437029 Msa0712580:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4434948 4438732 4434948 ID=Msa0712580;Name=Msa0712580
chr5_1 mRNA 4434948 4438732 4434948 ID=Msa0712580-mRNA-1;Parent=Msa0712580;Name=Msa0712580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=76|1|1|1|1|1|3|302|233
chr5_1 exon 4434948 4435360 4434948 ID=Msa0712580-mRNA-1:exon:1775;Parent=Msa0712580-mRNA-1
chr5_1 exon 4436204 4436334 4436204 ID=Msa0712580-mRNA-1:exon:1776;Parent=Msa0712580-mRNA-1
chr5_1 exon 4438197 4438732 4438197 ID=Msa0712580-mRNA-1:exon:1777;Parent=Msa0712580-mRNA-1
chr5_1 five_prime_UTR 4434948 4435023 4434948 ID=Msa0712580-mRNA-1:five_prime_utr;Parent=Msa0712580-mRNA-1
chr5_1 CDS 4435024 4435360 4435024 ID=Msa0712580-mRNA-1:cds;Parent=Msa0712580-mRNA-1
chr5_1 CDS 4436204 4436334 4436204 ID=Msa0712580-mRNA-1:cds;Parent=Msa0712580-mRNA-1
chr5_1 CDS 4438197 4438430 4438197 ID=Msa0712580-mRNA-1:cds;Parent=Msa0712580-mRNA-1
chr5_1 three_prime_UTR 4438431 4438732 4438431 ID=Msa0712580-mRNA-1:three_prime_utr;Parent=Msa0712580-mRNA-1
Gene Sequence

>Msa0712580

ATGTCTTCATCTTCTCTAACAGCTTCTTCTTACTCCTTCCCATTCACAACACCCACCAAATCTTCTCACCCAATTCCATTCTCTTATTCTTTTCCTCTCAAACACCATACCCTCCATCTCAAATCATCACCATCACTGTTTGTTTCAGCTTCAGGAGCTGCAACACCCACGACTTCAATTGAAATCGACAAATCTCCAATCTCCGCTACTCCTTCAAAGGTTCTTCCTTTTCGGGTTGGCCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGTTGCGAGGCTCATTCTGATGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGTCAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA

Protein sequence

>Msa0712580

MSSSSLTASSYSFPFTTPTKSSHPIPFSYSFPLKHHTLHLKSSPSLFVSASGAATPTTSIEIDKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK*