AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0350300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350300 MtrunA17_Chr3g0084881 95.337 193 9 0 1 193 1 193 8.33e-122 342
Msa0350300 MtrunA17_Chr3g0082061 55.000 60 26 1 89 147 16 75 1.09e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350300 AT5G40950.1 63.131 198 66 4 1 193 3 198 1.00e-72 218
Msa0350300 AT5G15220.2 56.989 93 39 1 56 147 45 137 3.77e-24 93.2
Msa0350300 AT5G15220.1 56.989 93 39 1 56 147 45 137 3.77e-24 93.2
Msa0350300 AT2G16930.1 65.278 72 25 0 56 127 45 116 4.25e-24 93.2
Msa0350300 AT2G16930.3 65.278 72 25 0 56 127 45 116 4.25e-24 93.2
Msa0350300 AT2G16930.4 65.278 72 25 0 56 127 45 116 4.25e-24 93.2
Msa0350300 AT2G16930.2 65.278 72 25 0 56 127 45 116 4.25e-24 93.2

Find 87 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTCGGTGTTAAAGTTTA+TGG 0.177876 3_1:+15301062 Msa0350300:CDS
TTCCTTAATCTATAGCTATC+AGG 0.215682 3_1:-15303146 None:intergenic
TGACTATACTGCCCTATAAT+TGG 0.245658 3_1:-15303456 None:intergenic
CTCCCTTCTTATGCGCATTC+CGG 0.286474 3_1:-15301001 None:intergenic
TCCATCAATTAGGGAGAAAA+TGG 0.286561 3_1:-15302958 None:intergenic
AGTGGTAGAACCAGATAAAA+AGG 0.297027 3_1:-15300919 None:intergenic
GTTGTAAAATTTGAGAAATA+TGG 0.308551 3_1:+15302981 Msa0350300:CDS
TGTGTCTACAAACCAATTAT+AGG 0.323323 3_1:+15303444 Msa0350300:three_prime_UTR
GGCGGAGTCACGTCCATTCT+TGG 0.334576 3_1:-15301033 None:intergenic
TTGTAGACACAACAACATTA+AGG 0.336822 3_1:-15303432 None:intergenic
TAAGGAAGACAGAGTACTTC+AGG 0.341038 3_1:+15303162 Msa0350300:CDS
ACCCTGATAGCTATAGATTA+AGG 0.341292 3_1:+15303144 Msa0350300:CDS
ATATGGACCTGACAAGAAAA+AGG 0.362247 3_1:+15302998 Msa0350300:CDS
AAGAGGGAGAAGAGAGAGAA+AGG 0.380860 3_1:-15300881 None:intergenic
AATCTATAGCTATCAGGGTT+TGG 0.387600 3_1:-15303140 None:intergenic
AGAGGCCAAGTTTGAAAACT+TGG 0.388467 3_1:-15303592 None:intergenic
ATATAACAGGTAAAATCTTC+AGG 0.390092 3_1:-15303639 None:intergenic
GATGAGACGTGAACGCAAAA+AGG 0.391120 3_1:+15303184 Msa0350300:CDS
AAATGAAGATGAGGTGGATA+AGG 0.395309 3_1:-15300754 None:intergenic
ACAACATTAAGGAAAAGTTT+TGG 0.399885 3_1:-15303421 None:intergenic
TTTGTACTCTAAAATATAAC+AGG 0.404271 3_1:-15303652 None:intergenic
TTCTATTTGAGTAAATGAAA+TGG 0.404667 3_1:+15303510 Msa0350300:three_prime_UTR
TTCCACCATGGCTGTATGCA+TGG 0.414968 3_1:+15300830 Msa0350300:exon
GTGTCTACAAACCAATTATA+GGG 0.418355 3_1:+15303445 Msa0350300:three_prime_UTR
ATGTTATGGTACTACACAAT+TGG 0.420323 3_1:+15303706 Msa0350300:three_prime_UTR
ATCGGTCAGCACTGATAATC+CGG 0.421185 3_1:+15300982 Msa0350300:CDS
AATGAAGATGAGGTGGATAA+GGG 0.424067 3_1:-15300753 None:intergenic
TAGCTATCAGGGTTTGGAAC+TGG 0.442628 3_1:-15303134 None:intergenic
GAAGTGTAGAATCAACAATC+TGG 0.443501 3_1:-15303278 None:intergenic
TAAATGCAAGGCATATGTTA+TGG 0.447451 3_1:+15303692 Msa0350300:three_prime_UTR
GCAGGAAAGAATGTAGGAAT+TGG 0.450063 3_1:+15302924 Msa0350300:CDS
GAGGTGGATAAGGGGAAATG+TGG 0.451682 3_1:-15300744 None:intergenic
TTTAACACCGAGACGCCTTC+CGG 0.456051 3_1:-15301054 None:intergenic
TCCACCATGGCTGTATGCAT+GGG 0.465483 3_1:+15300831 Msa0350300:exon
TCCTTAATCTATAGCTATCA+GGG 0.485245 3_1:-15303145 None:intergenic
TCAAACTTGGCCTCTGTCTG+TGG 0.491519 3_1:+15303600 Msa0350300:three_prime_UTR
GAGGCCAAGTTTGAAAACTT+GGG 0.492622 3_1:-15303591 None:intergenic
AGAGGGAGAAGAGAGAGAAA+GGG 0.492972 3_1:-15300880 None:intergenic
AATCCGGAATGCGCATAAGA+AGG 0.495169 3_1:+15300998 Msa0350300:CDS
GGTGACCAGGTCGCTAAGCC+TGG 0.500156 3_1:+15301083 Msa0350300:CDS
GGAAGATGAAGAAGATGAAG+AGG 0.500700 3_1:-15300898 None:intergenic
AGGTGGATAAGGGGAAATGT+GGG 0.506102 3_1:-15300743 None:intergenic
TCCACGCTGACGAACAATGA+TGG 0.507312 3_1:-15301108 None:intergenic
TTTGGAACTGGTTCTTCTCG+TGG 0.508400 3_1:-15303122 None:intergenic
GACTCCGCCGGAAGGCGTCT+CGG 0.510091 3_1:+15301047 Msa0350300:CDS
TTGGAACTGGTTCTTCTCGT+GGG 0.514065 3_1:-15303121 None:intergenic
CTCTATTGCGGCATCATCAA+CGG 0.525471 3_1:-15303252 None:intergenic
TGAGAGATAAGACTCAAGGA+AGG 0.531263 3_1:-15300785 None:intergenic
GGAGCAGGAAGTACCAAGAA+TGG 0.539613 3_1:+15301020 Msa0350300:CDS
CAGCCATGGTGGAAACTGTT+GGG 0.544181 3_1:-15300821 None:intergenic
TGGAACCAGGCTTAGCGACC+TGG 0.546580 3_1:-15301088 None:intergenic
GCTGACCGATGATGAATTCG+AGG 0.548418 3_1:-15300969 None:intergenic
AATGCGCATAAGAAGGGAGC+AGG 0.550393 3_1:+15301005 Msa0350300:CDS
TCCATCATTGTTCGTCAGCG+TGG 0.555721 3_1:+15301107 Msa0350300:CDS
ACAGCCATGGTGGAAACTGT+TGG 0.556995 3_1:-15300822 None:intergenic
ATGAAGATGAGGTGGATAAG+GGG 0.560121 3_1:-15300752 None:intergenic
TTTCACGCAGGAAAGAATGT+AGG 0.568792 3_1:+15302918 Msa0350300:CDS
GAAGATGAAGAAGATGAAGA+GGG 0.573170 3_1:-15300897 None:intergenic
GAAGTGAGAGATAAGACTCA+AGG 0.573323 3_1:-15300789 None:intergenic
ATCCGGAATGCGCATAAGAA+GGG 0.576028 3_1:+15300999 Msa0350300:CDS
CTCTCCCTCGAATTCATCAT+CGG 0.577761 3_1:+15300964 Msa0350300:CDS
TGTTAAAGTTTATGGTGACC+AGG 0.587699 3_1:+15301070 Msa0350300:CDS
AGAAGCAAATTAATTGAAGA+CGG 0.589753 3_1:-15303326 None:intergenic
AGGCCAAGTTTGAAAACTTG+GGG 0.598491 3_1:-15303590 None:intergenic
GAGAGATAAGACTCAAGGAA+GGG 0.599835 3_1:-15300784 None:intergenic
AAGAATGGACGTGACTCCGC+CGG 0.600460 3_1:+15301035 Msa0350300:CDS
TGTTCGTCAGCGTGGAACCA+AGG 0.607342 3_1:+15301115 Msa0350300:CDS
CAGAGAAATTGAACCATACA+CGG 0.614937 3_1:+15303398 Msa0350300:three_prime_UTR
TGAATGAAATGAAGATGAGG+TGG 0.620717 3_1:-15300760 None:intergenic
AAAGAATGTAGGAATTGGCA+AGG 0.623999 3_1:+15302929 Msa0350300:CDS
TGACGAACAATGATGGAACC+AGG 0.627337 3_1:-15301101 None:intergenic
CAAACAAAACTATAAATGCA+AGG 0.627779 3_1:+15303680 Msa0350300:three_prime_UTR
CAATTAGGGAGAAAATGGTA+TGG 0.636675 3_1:-15302953 None:intergenic
ATGGACGTGACTCCGCCGGA+AGG 0.639143 3_1:+15301039 Msa0350300:CDS
CTAGGACAAGCCACAGACAG+AGG 0.640422 3_1:-15303610 None:intergenic
ACAATCTGGATTCTCTATTG+CGG 0.641419 3_1:-15303264 None:intergenic
TGATGGAGTCATACGAAGAG+TGG 0.646269 3_1:-15300937 None:intergenic
AACACCGAGACGCCTTCCGG+CGG 0.649948 3_1:-15301051 None:intergenic
ACCCATGCATACAGCCATGG+TGG 0.650077 3_1:-15300832 None:intergenic
ATTCGAGGGAGAGATACTGA+TGG 0.655380 3_1:-15300954 None:intergenic
AAAATCTTCAGGATAACACT+AGG 0.658609 3_1:-15303628 None:intergenic
CAAAACTTGAAGTTTCACGC+AGG 0.664756 3_1:+15302906 Msa0350300:intron
GGATGAATGAAATGAAGATG+AGG 0.673192 3_1:-15300763 None:intergenic
GAAACCCATGCATACAGCCA+TGG 0.673634 3_1:-15300835 None:intergenic
CTGACCGATGATGAATTCGA+GGG 0.678497 3_1:-15300968 None:intergenic
CAACCCAACAGTTTCCACCA+TGG 0.696365 3_1:+15300818 Msa0350300:exon
ACGGAAGCGAGCATTAGCTG+TGG 0.714472 3_1:-15303233 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATGAATTTTGAAATTA+TGG + chr3_1:15301233-15301252 Msa0350300:intron 10.0%
!! AAATCCATAAACTTAAAAAA+GGG - chr3_1:15302272-15302291 None:intergenic 15.0%
!! CTTGATATTATAGAAAATTA+CGG + chr3_1:15302645-15302664 Msa0350300:intron 15.0%
!!! TTTTAGTAAGAAAAGAATTG+TGG + chr3_1:15301180-15301199 Msa0350300:intron 20.0%
!! CAAAATTCATATAACAATTC+AGG - chr3_1:15301227-15301246 None:intergenic 20.0%
!! ATTCTTAATGACAATTAACA+TGG - chr3_1:15301259-15301278 None:intergenic 20.0%
!! TGTCATTAAGAATTATACTT+TGG + chr3_1:15301266-15301285 Msa0350300:intron 20.0%
!! GTCATTAAGAATTATACTTT+GGG + chr3_1:15301267-15301286 Msa0350300:intron 20.0%
!! TTCGTTATTATTTAGACATT+TGG - chr3_1:15301611-15301630 None:intergenic 20.0%
!! AATCCATAAACTTAAAAAAG+GGG - chr3_1:15302271-15302290 None:intergenic 20.0%
!! CAAATCCATAAACTTAAAAA+AGG - chr3_1:15302273-15302292 None:intergenic 20.0%
!!! CGTAATTTTCTATAATATCA+AGG - chr3_1:15302647-15302666 None:intergenic 20.0%
!!! CTTATCATGATTTTAAATTG+CGG - chr3_1:15302771-15302790 None:intergenic 20.0%
!!! GCAATTTAAAATCATGATAA+GGG + chr3_1:15302770-15302789 Msa0350300:intron 20.0%
!! TTCAACATTATCTTAAAAAC+TGG - chr3_1:15302840-15302859 None:intergenic 20.0%
!! GAAAAATAATCAGAACTAAA+AGG - chr3_1:15302882-15302901 None:intergenic 20.0%
!! GTTGTAAAATTTGAGAAATA+TGG + chr3_1:15302981-15303000 Msa0350300:CDS 20.0%
!!! GTAATATTGTCTTTGTTTTT+TGG + chr3_1:15303374-15303393 Msa0350300:three_prime_UTR 20.0%
!! TTCTATTTGAGTAAATGAAA+TGG + chr3_1:15303510-15303529 Msa0350300:three_prime_UTR 20.0%
!!! TTTGTACTCTAAAATATAAC+AGG - chr3_1:15303655-15303674 None:intergenic 20.0%
!!! ATGATTAGTCTAGTAATTGT+TGG + chr3_1:15301633-15301652 Msa0350300:intron 25.0%
! TATAAAGTAATGATACGAAG+AGG - chr3_1:15301816-15301835 None:intergenic 25.0%
! TGTTATGATTTAGCACAATT+TGG + chr3_1:15302220-15302239 Msa0350300:intron 25.0%
!!! TTTCCCCTTTTTTAAGTTTA+TGG + chr3_1:15302265-15302284 Msa0350300:intron 25.0%
!! ACAAATACTTTTGATCAGTA+CGG + chr3_1:15302494-15302513 Msa0350300:intron 25.0%
!! AGGAAGTTCTTTAAAAGTTA+TGG - chr3_1:15302537-15302556 None:intergenic 25.0%
!! CGCAATTTAAAATCATGATA+AGG + chr3_1:15302769-15302788 Msa0350300:intron 25.0%
!! TTTTACAACTCCATCAATTA+GGG - chr3_1:15302970-15302989 None:intergenic 25.0%
!! ATTTTACAACTCCATCAATT+AGG - chr3_1:15302971-15302990 None:intergenic 25.0%
!! TTTATTACCTTTTTCTTGTC+AGG - chr3_1:15303008-15303027 None:intergenic 25.0%
! AGAAGCAAATTAATTGAAGA+CGG - chr3_1:15303329-15303348 None:intergenic 25.0%
!! ACAACATTAAGGAAAAGTTT+TGG - chr3_1:15303424-15303443 None:intergenic 25.0%
! ATATAACAGGTAAAATCTTC+AGG - chr3_1:15303642-15303661 None:intergenic 25.0%
!!! CTTGCATTTATAGTTTTGTT+TGG - chr3_1:15303682-15303701 None:intergenic 25.0%
! CAAACAAAACTATAAATGCA+AGG + chr3_1:15303680-15303699 Msa0350300:three_prime_UTR 25.0%
! TCTTCATCTTCCTTTTTATC+TGG + chr3_1:15300909-15300928 Msa0350300:CDS 30.0%
TGGCAGCAATGATAAAAATT+AGG - chr3_1:15301693-15301712 None:intergenic 30.0%
CACGGATATTAGTATAAAAC+TGG + chr3_1:15301870-15301889 Msa0350300:intron 30.0%
CAATCGAAAATTCATACAGA+AGG - chr3_1:15302001-15302020 None:intergenic 30.0%
AAATCTTATCTCACTAGACA+GGG - chr3_1:15302197-15302216 None:intergenic 30.0%
TTCTCTTTGTATGCATTTCT+AGG - chr3_1:15302409-15302428 None:intergenic 30.0%
CAGTGACTTTGATTAAAACA+TGG - chr3_1:15302613-15302632 None:intergenic 30.0%
TTAATCAAAGTCACTGTTAG+TGG + chr3_1:15302617-15302636 Msa0350300:intron 30.0%
CAAATACAGACTCAATGTAA+AGG - chr3_1:15302732-15302751 None:intergenic 30.0%
TTACATTGAGTCTGTATTTG+TGG + chr3_1:15302732-15302751 Msa0350300:intron 30.0%
!! AATCATGATAAGGGTGTTAT+AGG + chr3_1:15302779-15302798 Msa0350300:intron 30.0%
!! AGCTAGTTAATTTGTACTCT+AGG - chr3_1:15303066-15303085 None:intergenic 30.0%
TCCTTAATCTATAGCTATCA+GGG - chr3_1:15303148-15303167 None:intergenic 30.0%
TTCCTTAATCTATAGCTATC+AGG - chr3_1:15303149-15303168 None:intergenic 30.0%
TTGTAGACACAACAACATTA+AGG - chr3_1:15303435-15303454 None:intergenic 30.0%
TGTGTCTACAAACCAATTAT+AGG + chr3_1:15303444-15303463 Msa0350300:three_prime_UTR 30.0%
GTGTCTACAAACCAATTATA+GGG + chr3_1:15303445-15303464 Msa0350300:three_prime_UTR 30.0%
AAAATCTTCAGGATAACACT+AGG - chr3_1:15303631-15303650 None:intergenic 30.0%
TAAATGCAAGGCATATGTTA+TGG + chr3_1:15303692-15303711 Msa0350300:three_prime_UTR 30.0%
ATGTTATGGTACTACACAAT+TGG + chr3_1:15303706-15303725 Msa0350300:three_prime_UTR 30.0%
AATGAAGATGAGGTGGATAA+GGG - chr3_1:15300756-15300775 None:intergenic 35.0%
AAATGAAGATGAGGTGGATA+AGG - chr3_1:15300757-15300776 None:intergenic 35.0%
TGAATGAAATGAAGATGAGG+TGG - chr3_1:15300763-15300782 None:intergenic 35.0%
GGATGAATGAAATGAAGATG+AGG - chr3_1:15300766-15300785 None:intergenic 35.0%
GAAGATGAAGAAGATGAAGA+GGG - chr3_1:15300900-15300919 None:intergenic 35.0%
AGTGGTAGAACCAGATAAAA+AGG - chr3_1:15300922-15300941 None:intergenic 35.0%
TGTTAAAGTTTATGGTGACC+AGG + chr3_1:15301070-15301089 Msa0350300:CDS 35.0%
AGAGAATGAAAAACACACCT+TGG - chr3_1:15301135-15301154 None:intergenic 35.0%
! CTTTTACTAGGTTCGAAAAC+AGG + chr3_1:15301380-15301399 Msa0350300:intron 35.0%
AAACCAAACAGAACAGAACT+AGG - chr3_1:15301568-15301587 None:intergenic 35.0%
! TTTTATCATTGCTGCCAACA+TGG + chr3_1:15301696-15301715 Msa0350300:intron 35.0%
! GAAAGTTAGTGTGTCATTCA+CGG + chr3_1:15301852-15301871 Msa0350300:intron 35.0%
CTTCAGAAAGAATGTAAGAG+TGG + chr3_1:15301955-15301974 Msa0350300:intron 35.0%
AATGTAAGAGTGGAGGTTTA+TGG + chr3_1:15301965-15301984 Msa0350300:intron 35.0%
CTATATCTACCTATTCAGAG+GGG - chr3_1:15302098-15302117 None:intergenic 35.0%
GCTATATCTACCTATTCAGA+GGG - chr3_1:15302099-15302118 None:intergenic 35.0%
CAGTAGATTTCATAGCAAAC+AGG - chr3_1:15302121-15302140 None:intergenic 35.0%
!! CTGTTTGCTATGAAATCTAC+TGG + chr3_1:15302119-15302138 Msa0350300:intron 35.0%
! TTTGCTATGAAATCTACTGG+CGG + chr3_1:15302122-15302141 Msa0350300:intron 35.0%
ATACAAATTTGGCACAACTG+AGG + chr3_1:15302148-15302167 Msa0350300:intron 35.0%
CAAATCTTATCTCACTAGAC+AGG - chr3_1:15302198-15302217 None:intergenic 35.0%
GAAATGCATACAAAGAGAAG+TGG + chr3_1:15302410-15302429 Msa0350300:intron 35.0%
CTGAATATAGAACAAGCATG+AGG - chr3_1:15302557-15302576 None:intergenic 35.0%
CAGAGTAATAAATGCTACTG+TGG + chr3_1:15302574-15302593 Msa0350300:intron 35.0%
ATTGAGTCTGTATTTGTGGT+TGG + chr3_1:15302736-15302755 Msa0350300:intron 35.0%
TTGAGTCTGTATTTGTGGTT+GGG + chr3_1:15302737-15302756 Msa0350300:intron 35.0%
CAGAACTAAAAGGAACAGTA+AGG - chr3_1:15302872-15302891 None:intergenic 35.0%
AAAGAATGTAGGAATTGGCA+AGG + chr3_1:15302929-15302948 Msa0350300:CDS 35.0%
CAATTAGGGAGAAAATGGTA+TGG - chr3_1:15302956-15302975 None:intergenic 35.0%
! ACCATTTTCTCCCTAATTGA+TGG + chr3_1:15302957-15302976 Msa0350300:CDS 35.0%
TCCATCAATTAGGGAGAAAA+TGG - chr3_1:15302961-15302980 None:intergenic 35.0%
ATATGGACCTGACAAGAAAA+AGG + chr3_1:15302998-15303017 Msa0350300:CDS 35.0%
!! AATTTGTACTCTAGGATTGC+AGG - chr3_1:15303058-15303077 None:intergenic 35.0%
AATCTATAGCTATCAGGGTT+TGG - chr3_1:15303143-15303162 None:intergenic 35.0%
ACCCTGATAGCTATAGATTA+AGG + chr3_1:15303144-15303163 Msa0350300:CDS 35.0%
ACAATCTGGATTCTCTATTG+CGG - chr3_1:15303267-15303286 None:intergenic 35.0%
GAAGTGTAGAATCAACAATC+TGG - chr3_1:15303281-15303300 None:intergenic 35.0%
CAGAGAAATTGAACCATACA+CGG + chr3_1:15303398-15303417 Msa0350300:three_prime_UTR 35.0%
TGACTATACTGCCCTATAAT+TGG - chr3_1:15303459-15303478 None:intergenic 35.0%
! TTTCCCCAAGTTTTCAAACT+TGG + chr3_1:15303587-15303606 Msa0350300:three_prime_UTR 35.0%
ATGAAGATGAGGTGGATAAG+GGG - chr3_1:15300755-15300774 None:intergenic 40.0%
GAGAGATAAGACTCAAGGAA+GGG - chr3_1:15300787-15300806 None:intergenic 40.0%
TGAGAGATAAGACTCAAGGA+AGG - chr3_1:15300788-15300807 None:intergenic 40.0%
GAAGTGAGAGATAAGACTCA+AGG - chr3_1:15300792-15300811 None:intergenic 40.0%
GGAAGATGAAGAAGATGAAG+AGG - chr3_1:15300901-15300920 None:intergenic 40.0%
!! CGTCTCGGTGTTAAAGTTTA+TGG + chr3_1:15301062-15301081 Msa0350300:CDS 40.0%
! CTAGACCAGACACTTTTACT+AGG + chr3_1:15301368-15301387 Msa0350300:intron 40.0%
!! TCGAACCTAGTAAAAGTGTC+TGG - chr3_1:15301376-15301395 None:intergenic 40.0%
TAAGGTCAAGTACACCATGT+TGG - chr3_1:15301713-15301732 None:intergenic 40.0%
TTTATAAGAGTGACCTGACG+TGG + chr3_1:15301830-15301849 Msa0350300:intron 40.0%
CAGAAAGAATGTAAGAGTGG+AGG + chr3_1:15301958-15301977 Msa0350300:intron 40.0%
TGGAGGTTTATGGTTTGATG+TGG + chr3_1:15301975-15301994 Msa0350300:intron 40.0%
GGCTATATCTACCTATTCAG+AGG - chr3_1:15302100-15302119 None:intergenic 40.0%
ACTGGCGGTGAATACAAATT+TGG + chr3_1:15302137-15302156 Msa0350300:intron 40.0%
ATGCTACTGTGGAAGTAATG+AGG + chr3_1:15302585-15302604 Msa0350300:intron 40.0%
TGCTACTGTGGAAGTAATGA+GGG + chr3_1:15302586-15302605 Msa0350300:intron 40.0%
!! ATTTGCTTTTGCGATGCCAT+TGG + chr3_1:15302692-15302711 Msa0350300:intron 40.0%
TGAGTCTGTATTTGTGGTTG+GGG + chr3_1:15302738-15302757 Msa0350300:intron 40.0%
CAAAACTTGAAGTTTCACGC+AGG + chr3_1:15302906-15302925 Msa0350300:intron 40.0%
TTTCACGCAGGAAAGAATGT+AGG + chr3_1:15302918-15302937 Msa0350300:CDS 40.0%
GCAGGAAAGAATGTAGGAAT+TGG + chr3_1:15302924-15302943 Msa0350300:CDS 40.0%
! TAAGGAAGACAGAGTACTTC+AGG + chr3_1:15303162-15303181 Msa0350300:CDS 40.0%
AGGCCAAGTTTGAAAACTTG+GGG - chr3_1:15303593-15303612 None:intergenic 40.0%
GAGGCCAAGTTTGAAAACTT+GGG - chr3_1:15303594-15303613 None:intergenic 40.0%
AGAGGCCAAGTTTGAAAACT+TGG - chr3_1:15303595-15303614 None:intergenic 40.0%
AGGTGGATAAGGGGAAATGT+GGG - chr3_1:15300746-15300765 None:intergenic 45.0%
AGAGGGAGAAGAGAGAGAAA+GGG - chr3_1:15300883-15300902 None:intergenic 45.0%
AAGAGGGAGAAGAGAGAGAA+AGG - chr3_1:15300884-15300903 None:intergenic 45.0%
TGATGGAGTCATACGAAGAG+TGG - chr3_1:15300940-15300959 None:intergenic 45.0%
ATTCGAGGGAGAGATACTGA+TGG - chr3_1:15300957-15300976 None:intergenic 45.0%
CTCTCCCTCGAATTCATCAT+CGG + chr3_1:15300964-15300983 Msa0350300:CDS 45.0%
CTGACCGATGATGAATTCGA+GGG - chr3_1:15300971-15300990 None:intergenic 45.0%
!! ATCGGTCAGCACTGATAATC+CGG + chr3_1:15300982-15301001 Msa0350300:CDS 45.0%
AATCCGGAATGCGCATAAGA+AGG + chr3_1:15300998-15301017 Msa0350300:CDS 45.0%
ATCCGGAATGCGCATAAGAA+GGG + chr3_1:15300999-15301018 Msa0350300:CDS 45.0%
! TGACGAACAATGATGGAACC+AGG - chr3_1:15301104-15301123 None:intergenic 45.0%
!! TCAGCATTGGTCGTTGAGTT+TGG - chr3_1:15301343-15301362 None:intergenic 45.0%
TGGTCTAGCAACATCAGCAT+TGG - chr3_1:15301356-15301375 None:intergenic 45.0%
! GTTGTGCCTGTGTGAGTTTT+AGG + chr3_1:15301413-15301432 Msa0350300:intron 45.0%
ACACCACCTAAAACTCACAC+AGG - chr3_1:15301422-15301441 None:intergenic 45.0%
ACAGAACAGAACTAGGCACT+TGG - chr3_1:15301561-15301580 None:intergenic 45.0%
!! GTGCCTAGTTCTGTTCTGTT+TGG + chr3_1:15301562-15301581 Msa0350300:intron 45.0%
ACTTGACCTTAAGTGCGCTT+TGG + chr3_1:15301722-15301741 Msa0350300:intron 45.0%
CTTGACCTTAAGTGCGCTTT+GGG + chr3_1:15301723-15301742 Msa0350300:intron 45.0%
ACACACTAACTTTCCACGTC+AGG - chr3_1:15301846-15301865 None:intergenic 45.0%
TCACAGTTTGTGCAATCTCG+CGG + chr3_1:15302025-15302044 Msa0350300:intron 45.0%
! TTGTGCAATCTCGCGGATTA+AGG + chr3_1:15302032-15302051 Msa0350300:intron 45.0%
! TGTGCAATCTCGCGGATTAA+GGG + chr3_1:15302033-15302052 Msa0350300:intron 45.0%
GGTTCTTGAACTCTCACCAA+TGG - chr3_1:15302711-15302730 None:intergenic 45.0%
TCTGTATTTGTGGTTGGGGT+TGG + chr3_1:15302742-15302761 Msa0350300:intron 45.0%
CTGTATTTGTGGTTGGGGTT+GGG + chr3_1:15302743-15302762 Msa0350300:intron 45.0%
TGTATTTGTGGTTGGGGTTG+GGG + chr3_1:15302744-15302763 Msa0350300:intron 45.0%
! TTGGAACTGGTTCTTCTCGT+GGG - chr3_1:15303124-15303143 None:intergenic 45.0%
! TTTGGAACTGGTTCTTCTCG+TGG - chr3_1:15303125-15303144 None:intergenic 45.0%
! TAGCTATCAGGGTTTGGAAC+TGG - chr3_1:15303137-15303156 None:intergenic 45.0%
GATGAGACGTGAACGCAAAA+AGG + chr3_1:15303184-15303203 Msa0350300:CDS 45.0%
CTCTATTGCGGCATCATCAA+CGG - chr3_1:15303255-15303274 None:intergenic 45.0%
!! GGAAAAGTTTTGGCCGTGTA+TGG - chr3_1:15303414-15303433 None:intergenic 45.0%
!! TGAAAAAAAAAATATAAAAT+TGG + chr3_1:15301295-15301314 Msa0350300:intron 5.0%
GAGGTGGATAAGGGGAAATG+TGG - chr3_1:15300747-15300766 None:intergenic 50.0%
CAACCCAACAGTTTCCACCA+TGG + chr3_1:15300818-15300837 Msa0350300:exon 50.0%
! CAGCCATGGTGGAAACTGTT+GGG - chr3_1:15300824-15300843 None:intergenic 50.0%
! ACAGCCATGGTGGAAACTGT+TGG - chr3_1:15300825-15300844 None:intergenic 50.0%
TTCCACCATGGCTGTATGCA+TGG + chr3_1:15300830-15300849 Msa0350300:exon 50.0%
TCCACCATGGCTGTATGCAT+GGG + chr3_1:15300831-15300850 Msa0350300:exon 50.0%
GAAACCCATGCATACAGCCA+TGG - chr3_1:15300838-15300857 None:intergenic 50.0%
GCTGACCGATGATGAATTCG+AGG - chr3_1:15300972-15300991 None:intergenic 50.0%
CTCCCTTCTTATGCGCATTC+CGG - chr3_1:15301004-15301023 None:intergenic 50.0%
AATGCGCATAAGAAGGGAGC+AGG + chr3_1:15301005-15301024 Msa0350300:CDS 50.0%
!! GGAGCAGGAAGTACCAAGAA+TGG + chr3_1:15301020-15301039 Msa0350300:CDS 50.0%
TTTAACACCGAGACGCCTTC+CGG - chr3_1:15301057-15301076 None:intergenic 50.0%
TCCATCATTGTTCGTCAGCG+TGG + chr3_1:15301107-15301126 Msa0350300:CDS 50.0%
TCCACGCTGACGAACAATGA+TGG - chr3_1:15301111-15301130 None:intergenic 50.0%
!!! GTGCCTGTGTGAGTTTTAGG+TGG + chr3_1:15301416-15301435 Msa0350300:intron 50.0%
CGTGCATTTCCCCTCTGAAT+AGG + chr3_1:15302086-15302105 Msa0350300:intron 50.0%
GGCACAACTGAGGCACAATT+TGG + chr3_1:15302158-15302177 Msa0350300:intron 50.0%
GTATTTGTGGTTGGGGTTGG+GGG + chr3_1:15302745-15302764 Msa0350300:intron 50.0%
TCAAACTTGGCCTCTGTCTG+TGG + chr3_1:15303600-15303619 Msa0350300:three_prime_UTR 50.0%
ACCCATGCATACAGCCATGG+TGG - chr3_1:15300835-15300854 None:intergenic 55.0%
AAGAATGGACGTGACTCCGC+CGG + chr3_1:15301035-15301054 Msa0350300:CDS 55.0%
TGTTCGTCAGCGTGGAACCA+AGG + chr3_1:15301115-15301134 Msa0350300:CDS 55.0%
CACACAGGCACAACTGTGTG+AGG - chr3_1:15301407-15301426 None:intergenic 55.0%
! GACCTTAAGTGCGCTTTGGG+CGG + chr3_1:15301726-15301745 Msa0350300:intron 55.0%
TTCCGCCCAAAGCGCACTTA+AGG - chr3_1:15301731-15301750 None:intergenic 55.0%
ACGGAAGCGAGCATTAGCTG+TGG - chr3_1:15303236-15303255 None:intergenic 55.0%
CTAGGACAAGCCACAGACAG+AGG - chr3_1:15303613-15303632 None:intergenic 55.0%
GGCGGAGTCACGTCCATTCT+TGG - chr3_1:15301036-15301055 None:intergenic 60.0%
TGGAACCAGGCTTAGCGACC+TGG - chr3_1:15301091-15301110 None:intergenic 60.0%
ATGGACGTGACTCCGCCGGA+AGG + chr3_1:15301039-15301058 Msa0350300:CDS 65.0%
AACACCGAGACGCCTTCCGG+CGG - chr3_1:15301054-15301073 None:intergenic 65.0%
GGTGACCAGGTCGCTAAGCC+TGG + chr3_1:15301083-15301102 Msa0350300:CDS 65.0%
!! GACTCCGCCGGAAGGCGTCT+CGG + chr3_1:15301047-15301066 Msa0350300:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 15300742 15303741 15300742 ID=Msa0350300;Name=Msa0350300
chr3_1 mRNA 15300742 15303741 15300742 ID=Msa0350300-mRNA-1;Parent=Msa0350300;Name=Msa0350300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=95|1|1|1|1|1|3|452|193
chr3_1 exon 15300742 15301136 15300742 ID=Msa0350300-mRNA-1:exon:3717;Parent=Msa0350300-mRNA-1
chr3_1 exon 15302918 15303019 15302918 ID=Msa0350300-mRNA-1:exon:3718;Parent=Msa0350300-mRNA-1
chr3_1 exon 15303110 15303741 15303110 ID=Msa0350300-mRNA-1:exon:3719;Parent=Msa0350300-mRNA-1
chr3_1 five_prime_UTR 15300742 15300836 15300742 ID=Msa0350300-mRNA-1:five_prime_utr;Parent=Msa0350300-mRNA-1
chr3_1 CDS 15300837 15301136 15300837 ID=Msa0350300-mRNA-1:cds;Parent=Msa0350300-mRNA-1
chr3_1 CDS 15302918 15303019 15302918 ID=Msa0350300-mRNA-1:cds;Parent=Msa0350300-mRNA-1
chr3_1 CDS 15303110 15303289 15303110 ID=Msa0350300-mRNA-1:cds;Parent=Msa0350300-mRNA-1
chr3_1 three_prime_UTR 15303290 15303741 15303290 ID=Msa0350300-mRNA-1:three_prime_utr;Parent=Msa0350300-mRNA-1
Gene Sequence

>Msa0350300

ATGGCTGTATGCATGGGTTTCAACATAGCAACATCATTCAAATCCCTTTCTCTCTCTTCTCCCTCTTCATCTTCTTCATCTTCCTTTTTATCTGGTTCTACCACTCTTCGTATGACTCCATCAGTATCTCTCCCTCGAATTCATCATCGGTCAGCACTGATAATCCGGAATGCGCATAAGAAGGGAGCAGGAAGTACCAAGAATGGACGTGACTCCGCCGGAAGGCGTCTCGGTGTTAAAGTTTATGGTGACCAGGTCGCTAAGCCTGGTTCCATCATTGTTCGTCAGCGTGGAACCAAGTTTCACGCAGGAAAGAATGTAGGAATTGGCAAGGACCATACCATTTTCTCCCTAATTGATGGAGTTGTAAAATTTGAGAAATATGGACCTGACAAGAAAAAGATCAGTGTTTACCCACGAGAAGAACCAGTTCCAAACCCTGATAGCTATAGATTAAGGAAGACAGAGTACTTCAGGATGAGACGTGAACGCAAAAAGGCTGCTCAAGAAAGAAGAGCTTTTCAACCACAGCTAATGCTCGCTTCCGTTGATGATGCCGCAATAGAGAATCCAGATTGTTGA

Protein sequence

>Msa0350300

MAVCMGFNIATSFKSLSLSSPSSSSSSSFLSGSTTLRMTPSVSLPRIHHRSALIIRNAHKKGAGSTKNGRDSAGRRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGVVKFEKYGPDKKKISVYPREEPVPNPDSYRLRKTEYFRMRRERKKAAQERRAFQPQLMLASVDDAAIENPDC*