AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149340 MtrunA17_Chr1g0146901 89.474 95 8 1 1 95 1 93 7.24e-57 170
Msa0149340 MtrunA17_Chr3g0127221 85.263 95 14 0 1 95 1 95 5.95e-55 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149340 AT5G53045.1 69.663 89 27 0 3 91 7 95 3.83e-41 130

Find 40 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTGACCCACTTCCTTAT+TGG 0.185735 1_4:-10059941 None:intergenic
ACCAAAACAATTGAAGAATT+TGG 0.196365 1_4:+10061290 Msa0149340:CDS
ACCAAATTCTTCAATTGTTT+TGG 0.227496 1_4:-10061291 None:intergenic
TTTATGTGTTATGAATTAAA+AGG 0.227662 1_4:-10061456 None:intergenic
ATGCACACTCAAATTTATAT+TGG 0.236305 1_4:-10059978 None:intergenic
AGTGACTTGGAAGTGGATTT+TGG 0.302231 1_4:+10060448 Msa0149340:intron
CTAAATTAGTCATCTTGAAT+TGG 0.309784 1_4:+10059885 Msa0149340:five_prime_UTR
TGCACACTCAAATTTATATT+GGG 0.338729 1_4:-10059977 None:intergenic
AATGGAGCTGTGACTTCTTA+TGG 0.358258 1_4:+10061319 Msa0149340:exon
ATGAGTCGTTTAACTTTGTC+AGG 0.393714 1_4:-10060619 None:intergenic
GAATGATGCTCGAAGAAATC+TGG 0.394790 1_4:-10061237 None:intergenic
CTTTATATTTAGGCACTTTG+AGG 0.444146 1_4:+10061205 Msa0149340:intron
TTATGTGTTATGAATTAAAA+GGG 0.461490 1_4:-10061455 None:intergenic
CTCAAATTTATATTGGGAGC+GGG 0.477179 1_4:-10059971 None:intergenic
TTTATTAAGAAACACATCTC+AGG 0.489313 1_4:-10061424 None:intergenic
TGGACTATCCAATAAGGAAG+TGG 0.498479 1_4:+10059933 Msa0149340:five_prime_UTR
TACTGCCTTAGCTGTGGATG+AGG 0.500963 1_4:+10060498 Msa0149340:CDS
CGACTCATGACGGTGTCTGA+TGG 0.504463 1_4:+10060634 Msa0149340:CDS
TGAAGAATTTGGTCAAGGAA+TGG 0.505507 1_4:+10061301 Msa0149340:CDS
AAACCTGGTAAAATCCCATT+GGG 0.510542 1_4:-10060090 None:intergenic
GAAATAGTACATTGAAACAT+TGG 0.514102 1_4:-10061349 None:intergenic
TGGTAAAATCCCATTGGGAT+TGG 0.519873 1_4:-10060085 None:intergenic
ACCGCACAACCAATCCCAAT+GGG 0.523620 1_4:+10060076 Msa0149340:CDS
GAATGACAATTGCAGTGACT+TGG 0.538867 1_4:+10060435 Msa0149340:intron
GAAACCTGGTAAAATCCCAT+TGG 0.539649 1_4:-10060091 None:intergenic
CAATTGCAGTGACTTGGAAG+TGG 0.541986 1_4:+10060441 Msa0149340:intron
CACCTCCTCATCCACAGCTA+AGG 0.544761 1_4:-10060503 None:intergenic
GGACTATCCAATAAGGAAGT+GGG 0.559011 1_4:+10059934 Msa0149340:five_prime_UTR
ACAATTGAAGAATTTGGTCA+AGG 0.561595 1_4:+10061296 Msa0149340:CDS
GGTGTCTGATGGAAAACTAT+TGG 0.566996 1_4:+10060645 Msa0149340:CDS
CACCGCACAACCAATCCCAA+TGG 0.570089 1_4:+10060075 Msa0149340:CDS
TCCCATTGGGATTGGTTGTG+CGG 0.578847 1_4:-10060077 None:intergenic
ACTCAAATTTATATTGGGAG+CGG 0.594457 1_4:-10059972 None:intergenic
CTTCGCGCTTGAAGTTGTTG+CGG 0.604354 1_4:+10060024 Msa0149340:five_prime_UTR
GCAGAGTAGTCAGTCACACA+TGG 0.611546 1_4:+10060046 Msa0149340:exon
TGTATATACTGCCTTAGCTG+TGG 0.617692 1_4:+10060492 Msa0149340:CDS
CAAAGTTAAACGACTCATGA+CGG 0.619519 1_4:+10060624 Msa0149340:CDS
TGCCTTAGCTGTGGATGAGG+AGG 0.619692 1_4:+10060501 Msa0149340:CDS
TTGGGATTGGTTGTGCGGTG+TGG 0.640385 1_4:-10060072 None:intergenic
AGTTGTGAGACATAGAAACG+AGG 0.773551 1_4:+10061496 Msa0149340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTATTTTAAAGAATTG+TGG + chr1_4:10060369-10060388 Msa0149340:intron 10.0%
!!! TAATTATTTTAAAGAATTGT+GGG + chr1_4:10060370-10060389 Msa0149340:intron 10.0%
!!! ATTGTTATTTTTAATAAAGA+TGG + chr1_4:10060413-10060432 Msa0149340:intron 10.0%
!!! TTAATTATTTTAAAGAATTG+TGG + chr1_4:10060369-10060388 Msa0149340:intron 10.0%
!!! TAATTATTTTAAAGAATTGT+GGG + chr1_4:10060370-10060389 Msa0149340:intron 10.0%
!!! ATTGTTATTTTTAATAAAGA+TGG + chr1_4:10060413-10060432 Msa0149340:intron 10.0%
!! AGATTAAATTAATTAATCAC+TGG - chr1_4:10060207-10060226 None:intergenic 15.0%
!!! ATTAGTTAATTTAGCTTTAA+TGG + chr1_4:10061121-10061140 Msa0149340:intron 15.0%
!! TTATGTGTTATGAATTAAAA+GGG - chr1_4:10061458-10061477 None:intergenic 15.0%
!! TTTATGTGTTATGAATTAAA+AGG - chr1_4:10061459-10061478 None:intergenic 15.0%
!! AGATTAAATTAATTAATCAC+TGG - chr1_4:10060207-10060226 None:intergenic 15.0%
!!! ATTAGTTAATTTAGCTTTAA+TGG + chr1_4:10061121-10061140 Msa0149340:intron 15.0%
!! TTATGTGTTATGAATTAAAA+GGG - chr1_4:10061458-10061477 None:intergenic 15.0%
!! TTTATGTGTTATGAATTAAA+AGG - chr1_4:10061459-10061478 None:intergenic 15.0%
!!! TGATTTTTTGCTTAACTTTT+TGG + chr1_4:10059913-10059932 Msa0149340:five_prime_UTR 20.0%
!! AGATAACTAAAAAACTTGAT+AGG - chr1_4:10060144-10060163 None:intergenic 20.0%
!! GCTTATTTACATAATTTCTA+GGG - chr1_4:10060271-10060290 None:intergenic 20.0%
!! AGCTTATTTACATAATTTCT+AGG - chr1_4:10060272-10060291 None:intergenic 20.0%
!!! ACTGCAATTATTTTTTTTGT+TGG + chr1_4:10061048-10061067 Msa0149340:intron 20.0%
!!! ATGTACTATTTCTTTTTGTA+TGG + chr1_4:10061360-10061379 Msa0149340:three_prime_UTR 20.0%
!!! TGATTTTTTGCTTAACTTTT+TGG + chr1_4:10059913-10059932 Msa0149340:five_prime_UTR 20.0%
!! AGATAACTAAAAAACTTGAT+AGG - chr1_4:10060144-10060163 None:intergenic 20.0%
!! GCTTATTTACATAATTTCTA+GGG - chr1_4:10060271-10060290 None:intergenic 20.0%
!! AGCTTATTTACATAATTTCT+AGG - chr1_4:10060272-10060291 None:intergenic 20.0%
!!! ACTGCAATTATTTTTTTTGT+TGG + chr1_4:10061048-10061067 Msa0149340:intron 20.0%
!!! ATGTACTATTTCTTTTTGTA+TGG + chr1_4:10061360-10061379 Msa0149340:three_prime_UTR 20.0%
! CTAAATTAGTCATCTTGAAT+TGG + chr1_4:10059885-10059904 Msa0149340:five_prime_UTR 25.0%
! TGCACACTCAAATTTATATT+GGG - chr1_4:10059980-10059999 None:intergenic 25.0%
! ATGCACACTCAAATTTATAT+TGG - chr1_4:10059981-10060000 None:intergenic 25.0%
!! GATTTCTTTTGTCTTATGAA+CGG - chr1_4:10060343-10060362 None:intergenic 25.0%
!!! GTTCAATGATTGTTTTAGTT+AGG + chr1_4:10060928-10060947 Msa0149340:intron 25.0%
! CATTGGAATCCTTTATATTT+AGG + chr1_4:10061195-10061214 Msa0149340:intron 25.0%
! ACCAAAACAATTGAAGAATT+TGG + chr1_4:10061290-10061309 Msa0149340:CDS 25.0%
!! ACCAAATTCTTCAATTGTTT+TGG - chr1_4:10061294-10061313 None:intergenic 25.0%
! GAAATAGTACATTGAAACAT+TGG - chr1_4:10061352-10061371 None:intergenic 25.0%
! TTTATTAAGAAACACATCTC+AGG - chr1_4:10061427-10061446 None:intergenic 25.0%
!!! CGAGGTTTATTTTCTTTTTT+TGG + chr1_4:10061514-10061533 Msa0149340:three_prime_UTR 25.0%
! CTAAATTAGTCATCTTGAAT+TGG + chr1_4:10059885-10059904 Msa0149340:five_prime_UTR 25.0%
! TGCACACTCAAATTTATATT+GGG - chr1_4:10059980-10059999 None:intergenic 25.0%
! ATGCACACTCAAATTTATAT+TGG - chr1_4:10059981-10060000 None:intergenic 25.0%
!! GATTTCTTTTGTCTTATGAA+CGG - chr1_4:10060343-10060362 None:intergenic 25.0%
!!! GTTCAATGATTGTTTTAGTT+AGG + chr1_4:10060928-10060947 Msa0149340:intron 25.0%
! CATTGGAATCCTTTATATTT+AGG + chr1_4:10061195-10061214 Msa0149340:intron 25.0%
! ACCAAAACAATTGAAGAATT+TGG + chr1_4:10061290-10061309 Msa0149340:CDS 25.0%
!! ACCAAATTCTTCAATTGTTT+TGG - chr1_4:10061294-10061313 None:intergenic 25.0%
! GAAATAGTACATTGAAACAT+TGG - chr1_4:10061352-10061371 None:intergenic 25.0%
! TTTATTAAGAAACACATCTC+AGG - chr1_4:10061427-10061446 None:intergenic 25.0%
!!! CGAGGTTTATTTTCTTTTTT+TGG + chr1_4:10061514-10061533 Msa0149340:three_prime_UTR 25.0%
! ACTTTTTGGACTATCCAATA+AGG + chr1_4:10059927-10059946 Msa0149340:five_prime_UTR 30.0%
ACTCAAATTTATATTGGGAG+CGG - chr1_4:10059975-10059994 None:intergenic 30.0%
!!! TTCCTTTTCGTGTTGATAAT+TGG + chr1_4:10060676-10060695 Msa0149340:intron 30.0%
AACCAATTATCAACACGAAA+AGG - chr1_4:10060681-10060700 None:intergenic 30.0%
TTTAGTTAGGATTTGAACTC+AGG + chr1_4:10060941-10060960 Msa0149340:intron 30.0%
CAGTTAGTGACAAATTGTTT+AGG - chr1_4:10060971-10060990 None:intergenic 30.0%
TTCCAATGAGATGAAAAACT+AGG - chr1_4:10061183-10061202 None:intergenic 30.0%
! CTCAAAGTGCCTAAATATAA+AGG - chr1_4:10061207-10061226 None:intergenic 30.0%
CTTTATATTTAGGCACTTTG+AGG + chr1_4:10061205-10061224 Msa0149340:intron 30.0%
ACAATTGAAGAATTTGGTCA+AGG + chr1_4:10061296-10061315 Msa0149340:CDS 30.0%
!!! CAAGACATTTTTTGTATGCA+TGG + chr1_4:10061392-10061411 Msa0149340:three_prime_UTR 30.0%
! ACTTTTTGGACTATCCAATA+AGG + chr1_4:10059927-10059946 Msa0149340:five_prime_UTR 30.0%
ACTCAAATTTATATTGGGAG+CGG - chr1_4:10059975-10059994 None:intergenic 30.0%
!!! TTCCTTTTCGTGTTGATAAT+TGG + chr1_4:10060676-10060695 Msa0149340:intron 30.0%
AACCAATTATCAACACGAAA+AGG - chr1_4:10060681-10060700 None:intergenic 30.0%
TTTAGTTAGGATTTGAACTC+AGG + chr1_4:10060941-10060960 Msa0149340:intron 30.0%
CAGTTAGTGACAAATTGTTT+AGG - chr1_4:10060971-10060990 None:intergenic 30.0%
TTCCAATGAGATGAAAAACT+AGG - chr1_4:10061183-10061202 None:intergenic 30.0%
! CTCAAAGTGCCTAAATATAA+AGG - chr1_4:10061207-10061226 None:intergenic 30.0%
CTTTATATTTAGGCACTTTG+AGG + chr1_4:10061205-10061224 Msa0149340:intron 30.0%
ACAATTGAAGAATTTGGTCA+AGG + chr1_4:10061296-10061315 Msa0149340:CDS 30.0%
!!! CAAGACATTTTTTGTATGCA+TGG + chr1_4:10061392-10061411 Msa0149340:three_prime_UTR 30.0%
CTCAAATTTATATTGGGAGC+GGG - chr1_4:10059974-10059993 None:intergenic 35.0%
AAACCTGGTAAAATCCCATT+GGG - chr1_4:10060093-10060112 None:intergenic 35.0%
! ATGAGTCGTTTAACTTTGTC+AGG - chr1_4:10060622-10060641 None:intergenic 35.0%
CAAAGTTAAACGACTCATGA+CGG + chr1_4:10060624-10060643 Msa0149340:CDS 35.0%
! TGTAATCAATTTTGTGTGCG+AGG + chr1_4:10060787-10060806 Msa0149340:intron 35.0%
TTAACACCACCAGATTACTA+GGG - chr1_4:10060899-10060918 None:intergenic 35.0%
TCATTGTACTGCATCATGTT+TGG + chr1_4:10061021-10061040 Msa0149340:intron 35.0%
!! TGCCTAGTTTTTCATCTCAT+TGG + chr1_4:10061178-10061197 Msa0149340:intron 35.0%
! TTTTGTAGATGTCCTTACTC+TGG + chr1_4:10061265-10061284 Msa0149340:CDS 35.0%
TGAAGAATTTGGTCAAGGAA+TGG + chr1_4:10061301-10061320 Msa0149340:CDS 35.0%
!!! GACATTTTTTGTATGCATGG+AGG + chr1_4:10061395-10061414 Msa0149340:three_prime_UTR 35.0%
CTCAAATTTATATTGGGAGC+GGG - chr1_4:10059974-10059993 None:intergenic 35.0%
AAACCTGGTAAAATCCCATT+GGG - chr1_4:10060093-10060112 None:intergenic 35.0%
! ATGAGTCGTTTAACTTTGTC+AGG - chr1_4:10060622-10060641 None:intergenic 35.0%
CAAAGTTAAACGACTCATGA+CGG + chr1_4:10060624-10060643 Msa0149340:CDS 35.0%
! TGTAATCAATTTTGTGTGCG+AGG + chr1_4:10060787-10060806 Msa0149340:intron 35.0%
TTAACACCACCAGATTACTA+GGG - chr1_4:10060899-10060918 None:intergenic 35.0%
TCATTGTACTGCATCATGTT+TGG + chr1_4:10061021-10061040 Msa0149340:intron 35.0%
!! TGCCTAGTTTTTCATCTCAT+TGG + chr1_4:10061178-10061197 Msa0149340:intron 35.0%
! TTTTGTAGATGTCCTTACTC+TGG + chr1_4:10061265-10061284 Msa0149340:CDS 35.0%
TGAAGAATTTGGTCAAGGAA+TGG + chr1_4:10061301-10061320 Msa0149340:CDS 35.0%
!!! GACATTTTTTGTATGCATGG+AGG + chr1_4:10061395-10061414 Msa0149340:three_prime_UTR 35.0%
TGGACTATCCAATAAGGAAG+TGG + chr1_4:10059933-10059952 Msa0149340:five_prime_UTR 40.0%
GGACTATCCAATAAGGAAGT+GGG + chr1_4:10059934-10059953 Msa0149340:five_prime_UTR 40.0%
GATTTGACCCACTTCCTTAT+TGG - chr1_4:10059944-10059963 None:intergenic 40.0%
TGGTAAAATCCCATTGGGAT+TGG - chr1_4:10060088-10060107 None:intergenic 40.0%
! AATCCCAATGGGATTTTACC+AGG + chr1_4:10060087-10060106 Msa0149340:CDS 40.0%
GAAACCTGGTAAAATCCCAT+TGG - chr1_4:10060094-10060113 None:intergenic 40.0%
AGAGTAAAGAGAGAGAAACC+TGG - chr1_4:10060108-10060127 None:intergenic 40.0%
GAATGACAATTGCAGTGACT+TGG + chr1_4:10060435-10060454 Msa0149340:intron 40.0%
!! AGTGACTTGGAAGTGGATTT+TGG + chr1_4:10060448-10060467 Msa0149340:intron 40.0%
TGTATATACTGCCTTAGCTG+TGG + chr1_4:10060492-10060511 Msa0149340:CDS 40.0%
GGTGTCTGATGGAAAACTAT+TGG + chr1_4:10060645-10060664 Msa0149340:CDS 40.0%
TCTTAACCCTCTTATTCTCG+TGG + chr1_4:10060865-10060884 Msa0149340:intron 40.0%
CTTAACCCTCTTATTCTCGT+GGG + chr1_4:10060866-10060885 Msa0149340:intron 40.0%
TCTTTCCCACGAGAATAAGA+GGG - chr1_4:10060874-10060893 None:intergenic 40.0%
TTCTTTCCCACGAGAATAAG+AGG - chr1_4:10060875-10060894 None:intergenic 40.0%
CTTAACACCACCAGATTACT+AGG - chr1_4:10060900-10060919 None:intergenic 40.0%
ATGAAGTGGTTGGACTCAAA+TGG - chr1_4:10061005-10061024 None:intergenic 40.0%
ATGCAGTACAATGAAGTGGT+TGG - chr1_4:10061015-10061034 None:intergenic 40.0%
CATGATGCAGTACAATGAAG+TGG - chr1_4:10061019-10061038 None:intergenic 40.0%
GAATGATGCTCGAAGAAATC+TGG - chr1_4:10061240-10061259 None:intergenic 40.0%
!!! TTGTTTTGGTTGCCAGAGTA+AGG - chr1_4:10061280-10061299 None:intergenic 40.0%
AATGGAGCTGTGACTTCTTA+TGG + chr1_4:10061319-10061338 Msa0149340:exon 40.0%
AGTTGTGAGACATAGAAACG+AGG + chr1_4:10061496-10061515 Msa0149340:three_prime_UTR 40.0%
!!! TCTTTTTTTGGTGTGAACCG+AGG + chr1_4:10061526-10061545 Msa0149340:three_prime_UTR 40.0%
!!! CTTTTTTTGGTGTGAACCGA+GGG + chr1_4:10061527-10061546 Msa0149340:three_prime_UTR 40.0%
TGGACTATCCAATAAGGAAG+TGG + chr1_4:10059933-10059952 Msa0149340:five_prime_UTR 40.0%
GGACTATCCAATAAGGAAGT+GGG + chr1_4:10059934-10059953 Msa0149340:five_prime_UTR 40.0%
GATTTGACCCACTTCCTTAT+TGG - chr1_4:10059944-10059963 None:intergenic 40.0%
TGGTAAAATCCCATTGGGAT+TGG - chr1_4:10060088-10060107 None:intergenic 40.0%
! AATCCCAATGGGATTTTACC+AGG + chr1_4:10060087-10060106 Msa0149340:CDS 40.0%
GAAACCTGGTAAAATCCCAT+TGG - chr1_4:10060094-10060113 None:intergenic 40.0%
AGAGTAAAGAGAGAGAAACC+TGG - chr1_4:10060108-10060127 None:intergenic 40.0%
GAATGACAATTGCAGTGACT+TGG + chr1_4:10060435-10060454 Msa0149340:intron 40.0%
!! AGTGACTTGGAAGTGGATTT+TGG + chr1_4:10060448-10060467 Msa0149340:intron 40.0%
TGTATATACTGCCTTAGCTG+TGG + chr1_4:10060492-10060511 Msa0149340:CDS 40.0%
GGTGTCTGATGGAAAACTAT+TGG + chr1_4:10060645-10060664 Msa0149340:CDS 40.0%
TCTTAACCCTCTTATTCTCG+TGG + chr1_4:10060865-10060884 Msa0149340:intron 40.0%
CTTAACCCTCTTATTCTCGT+GGG + chr1_4:10060866-10060885 Msa0149340:intron 40.0%
TCTTTCCCACGAGAATAAGA+GGG - chr1_4:10060874-10060893 None:intergenic 40.0%
TTCTTTCCCACGAGAATAAG+AGG - chr1_4:10060875-10060894 None:intergenic 40.0%
CTTAACACCACCAGATTACT+AGG - chr1_4:10060900-10060919 None:intergenic 40.0%
ATGAAGTGGTTGGACTCAAA+TGG - chr1_4:10061005-10061024 None:intergenic 40.0%
ATGCAGTACAATGAAGTGGT+TGG - chr1_4:10061015-10061034 None:intergenic 40.0%
CATGATGCAGTACAATGAAG+TGG - chr1_4:10061019-10061038 None:intergenic 40.0%
GAATGATGCTCGAAGAAATC+TGG - chr1_4:10061240-10061259 None:intergenic 40.0%
!!! TTGTTTTGGTTGCCAGAGTA+AGG - chr1_4:10061280-10061299 None:intergenic 40.0%
AATGGAGCTGTGACTTCTTA+TGG + chr1_4:10061319-10061338 Msa0149340:exon 40.0%
AGTTGTGAGACATAGAAACG+AGG + chr1_4:10061496-10061515 Msa0149340:three_prime_UTR 40.0%
! CAATTGCAGTGACTTGGAAG+TGG + chr1_4:10060441-10060460 Msa0149340:intron 45.0%
GGAAAGAAGCCCTAGTAATC+TGG + chr1_4:10060887-10060906 Msa0149340:intron 45.0%
AAGAAGCCCTAGTAATCTGG+TGG + chr1_4:10060890-10060909 Msa0149340:intron 45.0%
! CAATTGCAGTGACTTGGAAG+TGG + chr1_4:10060441-10060460 Msa0149340:intron 45.0%
GGAAAGAAGCCCTAGTAATC+TGG + chr1_4:10060887-10060906 Msa0149340:intron 45.0%
AAGAAGCCCTAGTAATCTGG+TGG + chr1_4:10060890-10060909 Msa0149340:intron 45.0%
!! TAAATTGAATTATTAATTAA+TGG - chr1_4:10060308-10060327 None:intergenic 5.0%
!! TAAATTGAATTATTAATTAA+TGG - chr1_4:10060308-10060327 None:intergenic 5.0%
CTTCGCGCTTGAAGTTGTTG+CGG + chr1_4:10060024-10060043 Msa0149340:five_prime_UTR 50.0%
GCAGAGTAGTCAGTCACACA+TGG + chr1_4:10060046-10060065 Msa0149340:exon 50.0%
ACCGCACAACCAATCCCAAT+GGG + chr1_4:10060076-10060095 Msa0149340:CDS 50.0%
!! TCCCATTGGGATTGGTTGTG+CGG - chr1_4:10060080-10060099 None:intergenic 50.0%
TACTGCCTTAGCTGTGGATG+AGG + chr1_4:10060498-10060517 Msa0149340:CDS 50.0%
CTTCGCGCTTGAAGTTGTTG+CGG + chr1_4:10060024-10060043 Msa0149340:five_prime_UTR 50.0%
GCAGAGTAGTCAGTCACACA+TGG + chr1_4:10060046-10060065 Msa0149340:exon 50.0%
ACCGCACAACCAATCCCAAT+GGG + chr1_4:10060076-10060095 Msa0149340:CDS 50.0%
!! TCCCATTGGGATTGGTTGTG+CGG - chr1_4:10060080-10060099 None:intergenic 50.0%
TACTGCCTTAGCTGTGGATG+AGG + chr1_4:10060498-10060517 Msa0149340:CDS 50.0%
!! TTGGGATTGGTTGTGCGGTG+TGG - chr1_4:10060075-10060094 None:intergenic 55.0%
CACCGCACAACCAATCCCAA+TGG + chr1_4:10060075-10060094 Msa0149340:CDS 55.0%
TGCCTTAGCTGTGGATGAGG+AGG + chr1_4:10060501-10060520 Msa0149340:CDS 55.0%
CACCTCCTCATCCACAGCTA+AGG - chr1_4:10060506-10060525 None:intergenic 55.0%
CGACTCATGACGGTGTCTGA+TGG + chr1_4:10060634-10060653 Msa0149340:CDS 55.0%
!! TTGGGATTGGTTGTGCGGTG+TGG - chr1_4:10060075-10060094 None:intergenic 55.0%
CACCGCACAACCAATCCCAA+TGG + chr1_4:10060075-10060094 Msa0149340:CDS 55.0%
TGCCTTAGCTGTGGATGAGG+AGG + chr1_4:10060501-10060520 Msa0149340:CDS 55.0%
CACCTCCTCATCCACAGCTA+AGG - chr1_4:10060506-10060525 None:intergenic 55.0%
CGACTCATGACGGTGTCTGA+TGG + chr1_4:10060634-10060653 Msa0149340:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10059859 10061547 10059859 ID=Msa0149340;Name=Msa0149340
chr1_4 mRNA 10059859 10061547 10059859 ID=Msa0149340-mRNA-1;Parent=Msa0149340;Name=Msa0149340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=206|1|1|1|1|1|4|216|95
chr1_4 exon 10059859 10060108 10059859 ID=Msa0149340-mRNA-1:exon:4243;Parent=Msa0149340-mRNA-1
chr1_4 exon 10060450 10060522 10060450 ID=Msa0149340-mRNA-1:exon:4244;Parent=Msa0149340-mRNA-1
chr1_4 exon 10060613 10060668 10060613 ID=Msa0149340-mRNA-1:exon:4245;Parent=Msa0149340-mRNA-1
chr1_4 exon 10061217 10061547 10061217 ID=Msa0149340-mRNA-1:exon:4246;Parent=Msa0149340-mRNA-1
chr1_4 five_prime_UTR 10059859 10060064 10059859 ID=Msa0149340-mRNA-1:five_prime_utr;Parent=Msa0149340-mRNA-1
chr1_4 CDS 10060065 10060108 10060065 ID=Msa0149340-mRNA-1:cds;Parent=Msa0149340-mRNA-1
chr1_4 CDS 10060450 10060522 10060450 ID=Msa0149340-mRNA-1:cds;Parent=Msa0149340-mRNA-1
chr1_4 CDS 10060613 10060668 10060613 ID=Msa0149340-mRNA-1:cds;Parent=Msa0149340-mRNA-1
chr1_4 CDS 10061217 10061331 10061217 ID=Msa0149340-mRNA-1:cds;Parent=Msa0149340-mRNA-1
chr1_4 three_prime_UTR 10061332 10061547 10061332 ID=Msa0149340-mRNA-1:three_prime_utr;Parent=Msa0149340-mRNA-1
Gene Sequence

>Msa0149340

ATGGATGCCACACCGCACAACCAATCCCAATGGGATTTTACCAGTGACTTGGAAGTGGATTTTGGTTCTCAAGAGAATGCTTCTATTGTATATACTGCCTTAGCTGTGGATGAGGAGTTGCAACCTGACAAAGTTAAACGACTCATGACGGTGTCTGATGGAAAACTATTGGTGCACTTTGAGGCAATAGAAGCCAGATTTCTTCGAGCATCATTCAGTGCTTTTGTAGATGTCCTTACTCTGGCAACCAAAACAATTGAAGAATTTGGTCAAGGAATGGAGCTGTGA
Protein sequence

>Msa0149340

MDATPHNQSQWDFTSDLEVDFGSQENASIVYTALAVDEELQPDKVKRLMTVSDGKLLVHFEAIEARFLRASFSAFVDVLTLATKTIEEFGQGMEL*