Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0253500 | XP_013464364.1 | 96.644 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0253500 | sp|Q9XGP7|OMT15_ORYSJ | 46.364 | 220 | 105 | 4 | 91 | 297 | 31 | 250 | 2.80e-55 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0253500 | A0A072V8S2 | 96.644 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025340 | Msa0253500 | 0.810240 | 1.272107e-50 | -8.615850e-47 |
| Msa0025830 | Msa0253500 | 0.813356 | 2.667664e-51 | -8.615850e-47 |
| Msa0049990 | Msa0253500 | 0.811220 | 7.808093e-51 | -8.615850e-47 |
| Msa0051600 | Msa0253500 | 0.819273 | 1.266180e-52 | -8.615850e-47 |
| Msa0073350 | Msa0253500 | 0.819936 | 8.938314e-53 | -8.615850e-47 |
| Msa0089160 | Msa0253500 | 0.802341 | 5.874768e-49 | -8.615850e-47 |
| Msa0094700 | Msa0253500 | 0.826920 | 2.081660e-54 | -8.615850e-47 |
| Msa0112290 | Msa0253500 | 0.805184 | 1.508579e-49 | -8.615850e-47 |
| Msa0115410 | Msa0253500 | 0.811352 | 7.308356e-51 | -8.615850e-47 |
| Msa0115950 | Msa0253500 | 0.805171 | 1.518697e-49 | -8.615850e-47 |
| Msa0136040 | Msa0253500 | 0.819601 | 1.066211e-52 | -8.615850e-47 |
| Msa0146110 | Msa0253500 | 0.819261 | 1.274580e-52 | -8.615850e-47 |
| Msa0173850 | Msa0253500 | 0.814752 | 1.312575e-51 | -8.615850e-47 |
| Msa0175280 | Msa0253500 | 0.803659 | 3.136644e-49 | -8.615850e-47 |
| Msa0179200 | Msa0253500 | 0.816619 | 5.035900e-52 | -8.615850e-47 |
| Msa0217300 | Msa0253500 | 0.817081 | 3.967594e-52 | -8.615850e-47 |
| Msa0253410 | Msa0253500 | 0.804765 | 1.845932e-49 | -8.615850e-47 |
| Msa0253500 | Msa0258410 | 0.802688 | 4.981924e-49 | -8.615850e-47 |
| Msa0253500 | Msa0269830 | 0.807302 | 5.401258e-50 | -8.615850e-47 |
| Msa0253500 | Msa0285740 | 0.802421 | 5.656540e-49 | -8.615850e-47 |
| Msa0253500 | Msa0292290 | 0.814879 | 1.230509e-51 | -8.615850e-47 |
| Msa0253500 | Msa0305810 | 0.803340 | 3.653199e-49 | -8.615850e-47 |
| Msa0253500 | Msa0341710 | 0.801006 | 1.103811e-48 | -8.615850e-47 |
| Msa0253500 | Msa0362840 | 0.810747 | 9.884408e-51 | -8.615850e-47 |
| Msa0253500 | Msa0365110 | 0.812382 | 4.361462e-51 | -8.615850e-47 |
| Msa0253500 | Msa0371870 | 0.807832 | 4.169582e-50 | -8.615850e-47 |
| Msa0253500 | Msa0376900 | 0.801959 | 7.038058e-49 | -8.615850e-47 |
| Msa0253500 | Msa0379390 | 0.816591 | 5.111350e-52 | -8.615850e-47 |
| Msa0253500 | Msa0379450 | 0.807412 | 5.118765e-50 | -8.615850e-47 |
| Msa0253500 | Msa0383110 | 0.811616 | 6.405826e-51 | -8.615850e-47 |
| Msa0253500 | Msa0396970 | 0.801792 | 7.619634e-49 | -8.615850e-47 |
| Msa0253500 | Msa0401370 | 0.800777 | 1.229100e-48 | -8.615850e-47 |
| Msa0253500 | Msa0415460 | 0.802428 | 5.638032e-49 | -8.615850e-47 |
| Msa0253500 | Msa0423820 | 0.812396 | 4.330148e-51 | -8.615850e-47 |
| Msa0253500 | Msa0455200 | 0.819132 | 1.363468e-52 | -8.615850e-47 |
| Msa0253500 | Msa0466340 | 0.809910 | 1.497674e-50 | -8.615850e-47 |
| Msa0253500 | Msa0498320 | 0.804764 | 1.846740e-49 | -8.615850e-47 |
| Msa0253500 | Msa0503120 | 0.808248 | 3.399818e-50 | -8.615850e-47 |
| Msa0253500 | Msa0524570 | 0.807091 | 5.988022e-50 | -8.615850e-47 |
| Msa0253500 | Msa0581190 | 0.807730 | 4.382503e-50 | -8.615850e-47 |
| Msa0253500 | Msa0598610 | 0.807829 | 4.175651e-50 | -8.615850e-47 |
| Msa0253500 | Msa0616000 | 0.802413 | 5.678211e-49 | -8.615850e-47 |
| Msa0253500 | Msa0657820 | 0.802837 | 4.641480e-49 | -8.615850e-47 |
| Msa0253500 | Msa0661490 | 0.809244 | 2.082358e-50 | -8.615850e-47 |
| Msa0253500 | Msa0707290 | 0.802741 | 4.858127e-49 | -8.615850e-47 |
| Msa0253500 | Msa0795850 | 0.804535 | 2.061754e-49 | -8.615850e-47 |
| Msa0253500 | Msa0803220 | 0.806376 | 8.477893e-50 | -8.615850e-47 |
| Msa0253500 | Msa0814760 | 0.820717 | 5.918444e-53 | -8.615850e-47 |
| Msa0253500 | Msa0881050 | 0.823552 | 1.302347e-53 | -8.615850e-47 |
| Msa0253500 | Msa0938970 | 0.825647 | 4.181757e-54 | -8.615850e-47 |
| Msa0253500 | Msa0946650 | 0.804799 | 1.816300e-49 | -8.615850e-47 |
| Msa0253500 | Msa0968010 | 0.808622 | 2.828555e-50 | -8.615850e-47 |
| Msa0253500 | Msa0975910 | 0.810843 | 9.422810e-51 | -8.615850e-47 |
| Msa0253500 | Msa1011210 | 0.820041 | 8.456513e-53 | -8.615850e-47 |
| Msa0253500 | Msa1011240 | 0.823075 | 1.684020e-53 | -8.615850e-47 |
| Msa0253500 | Msa1067430 | 0.802481 | 5.495879e-49 | -8.615850e-47 |
| Msa0253500 | Msa1074630 | 0.808247 | 3.402034e-50 | -8.615850e-47 |
| Msa0253500 | Msa1081850 | 0.800157 | 1.644267e-48 | -8.615850e-47 |
| Msa0253500 | Msa1082760 | 0.802679 | 5.004620e-49 | -8.615850e-47 |
| Msa0253500 | Msa1084490 | 0.803980 | 2.689954e-49 | -8.615850e-47 |
| Msa0253500 | Msa1096280 | 0.809249 | 2.077003e-50 | -8.615850e-47 |
| Msa0253500 | Msa1121630 | 0.821870 | 3.207562e-53 | -8.615850e-47 |
| Msa0253500 | Msa1137800 | 0.811006 | 8.685062e-51 | -8.615850e-47 |
| Msa0253500 | Msa1156210 | 0.812843 | 3.458009e-51 | -8.615850e-47 |
| Msa0253500 | Msa1162470 | 0.800786 | 1.223916e-48 | -8.615850e-47 |
| Msa0253500 | Msa1166020 | 0.802979 | 4.337615e-49 | -8.615850e-47 |
| Msa0253500 | Msa1207280 | 0.821074 | 4.898414e-53 | -8.615850e-47 |
| Msa0253500 | Msa1220260 | 0.802341 | 5.872955e-49 | -8.615850e-47 |
| Msa0253500 | Msa1228950 | 0.801059 | 1.076351e-48 | -8.615850e-47 |
| Msa0253500 | Msa1229050 | 0.801278 | 9.707962e-49 | -8.615850e-47 |
| Msa0253500 | Msa1251890 | 0.804254 | 2.359903e-49 | -8.615850e-47 |
| Msa0253500 | Msa1257520 | 0.834065 | 3.718422e-56 | -8.615850e-47 |
| Msa0253500 | Msa1258770 | 0.828403 | 9.168129e-55 | -8.615850e-47 |
| Msa0253500 | Msa1263460 | 0.806840 | 6.766332e-50 | -8.615850e-47 |
| Msa0253500 | Msa1265870 | 0.810688 | 1.018036e-50 | -8.615850e-47 |
| Msa0253500 | Msa1271490 | 0.802789 | 4.749194e-49 | -8.615850e-47 |
| Msa0253500 | Msa1329290 | 0.826115 | 3.237649e-54 | -8.615850e-47 |
| Msa0253500 | Msa1330280 | 0.814402 | 1.568873e-51 | -8.615850e-47 |
| Msa0253500 | Msa1336320 | 0.800988 | 1.113161e-48 | -8.615850e-47 |
| Msa0253500 | Msa1344940 | 0.832754 | 7.893759e-56 | -8.615850e-47 |
| Msa0253500 | Msa1349170 | 0.802215 | 6.236710e-49 | -8.615850e-47 |
| Msa0253500 | Msa1356680 | 0.810128 | 1.344655e-50 | -8.615850e-47 |
| Msa0253500 | Msa1366400 | 0.815057 | 1.123216e-51 | -8.615850e-47 |
| Msa0253500 | Msa1369900 | 0.830525 | 2.796026e-55 | -8.615850e-47 |
| Msa0253500 | Msa1373340 | 0.805954 | 1.040062e-49 | -8.615850e-47 |
| Msa0253500 | Msa1387650 | 0.802797 | 4.731695e-49 | -8.615850e-47 |
| Msa0253500 | Msa1396310 | 0.802084 | 6.634309e-49 | -8.615850e-47 |
| Msa0253500 | Msa1397110 | 0.800336 | 1.512145e-48 | -8.615850e-47 |
| Msa0253500 | Msa1403900 | 0.802693 | 4.970001e-49 | -8.615850e-47 |
| Msa0253500 | Msa1404370 | 0.802540 | 5.343981e-49 | -8.615850e-47 |
| Msa0253500 | Msa1406550 | 0.823740 | 1.176934e-53 | -8.615850e-47 |
| Msa0253500 | Msa1415250 | 0.800728 | 1.257987e-48 | -8.615850e-47 |
| Msa0253500 | Msa1432470 | 0.811351 | 7.313663e-51 | -8.615850e-47 |
| Msa0253500 | Msa1438380 | 0.806813 | 6.854016e-50 | -8.615850e-47 |
| Msa0253500 | Msa1449510 | 0.801356 | 9.360130e-49 | -8.615850e-47 |
| Msa0253500 | Msa1458330 | 0.800414 | 1.457725e-48 | -8.615850e-47 |
| Msa0253500 | Msa1460650 | 0.804501 | 2.095690e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0253500 | MtrunA17_Chr2g0312921 | 96.644 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 0.0 | 595 |
| Msa0253500 | MtrunA17_Chr8g0344401 | 39.171 | 217 | 122 | 4 | 91 | 297 | 17 | 233 | 4.14e-47 | 158 |
| Msa0253500 | MtrunA17_Chr4g0044581 | 39.631 | 217 | 121 | 5 | 91 | 297 | 29 | 245 | 1.25e-45 | 154 |
| Msa0253500 | MtrunA17_Chr4g0051041 | 38.009 | 221 | 124 | 5 | 88 | 296 | 8 | 227 | 3.85e-44 | 150 |
| Msa0253500 | MtrunA17_Chr4g0053031 | 34.109 | 258 | 129 | 7 | 59 | 297 | 11 | 246 | 1.65e-43 | 149 |
| Msa0253500 | MtrunA17_Chr4g0053241 | 35.659 | 258 | 125 | 8 | 59 | 297 | 11 | 246 | 2.33e-42 | 146 |
| Msa0253500 | MtrunA17_Chr4g0053331 | 37.004 | 227 | 113 | 9 | 91 | 297 | 25 | 241 | 8.19e-41 | 142 |
| Msa0253500 | MtrunA17_Chr6g0487981 | 36.574 | 216 | 128 | 3 | 91 | 297 | 21 | 236 | 1.14e-40 | 141 |
| Msa0253500 | MtrunA17_Chr8g0389361 | 40.278 | 216 | 120 | 4 | 91 | 297 | 23 | 238 | 2.72e-40 | 140 |
| Msa0253500 | MtrunA17_Chr4g0053021 | 36.444 | 225 | 117 | 8 | 91 | 297 | 28 | 244 | 5.37e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0253500 | AT3G62000.1 | 75.697 | 251 | 59 | 1 | 50 | 298 | 28 | 278 | 1.65e-141 | 400 |
| Msa0253500 | AT3G62000.2 | 74.477 | 239 | 59 | 1 | 50 | 286 | 28 | 266 | 3.12e-129 | 372 |
| Msa0253500 | AT3G61990.1 | 74.892 | 231 | 55 | 1 | 68 | 298 | 63 | 290 | 1.23e-124 | 358 |
| Msa0253500 | AT4G26220.1 | 42.009 | 219 | 112 | 4 | 91 | 297 | 15 | 230 | 3.10e-52 | 171 |
| Msa0253500 | AT4G34050.1 | 39.171 | 217 | 122 | 4 | 91 | 297 | 41 | 257 | 5.40e-47 | 159 |
| Msa0253500 | AT4G34050.3 | 39.171 | 217 | 122 | 4 | 91 | 297 | 68 | 284 | 7.94e-47 | 159 |
| Msa0253500 | AT1G67980.1 | 39.512 | 205 | 115 | 3 | 100 | 297 | 28 | 230 | 3.64e-45 | 153 |
| Msa0253500 | AT1G67990.1 | 38.710 | 217 | 122 | 4 | 91 | 297 | 16 | 231 | 4.49e-45 | 153 |
| Msa0253500 | AT1G24735.1 | 36.098 | 205 | 124 | 2 | 100 | 297 | 34 | 238 | 1.39e-40 | 141 |
| Msa0253500 | AT1G24735.3 | 35.789 | 190 | 117 | 1 | 113 | 297 | 4 | 193 | 1.54e-38 | 135 |
| Msa0253500 | AT1G24735.2 | 35.789 | 190 | 117 | 1 | 113 | 297 | 100 | 289 | 5.87e-38 | 136 |
| Msa0253500 | AT1G67980.2 | 32.051 | 156 | 99 | 2 | 147 | 297 | 9 | 162 | 4.92e-21 | 88.2 |
| Msa0253500 | AT4G34050.2 | 39.316 | 117 | 64 | 3 | 188 | 297 | 30 | 146 | 1.46e-20 | 86.3 |
Find 90 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTGGTTCACGAACATTT+TGG | 0.188147 | 2_2:+45344010 | None:intergenic |
| TCATTGCAATTGAACCATTC+AGG | 0.256625 | 2_2:-45340532 | Msa0253500:three_prime_UTR |
| GCAATGCTTGTGCAGATTCT+TGG | 0.287926 | 2_2:-45342471 | Msa0253500:CDS |
| AGTGAGCTCACCCACTCTTT+AGG | 0.289109 | 2_2:-45344473 | Msa0253500:five_prime_UTR |
| CTTAGCAACATCAAGAGATT+TGG | 0.302069 | 2_2:+45341770 | None:intergenic |
| GCAACTAAACGACCTGATTC+TGG | 0.314053 | 2_2:+45341807 | None:intergenic |
| CATTCATAATTAGAAATTCT+AGG | 0.329217 | 2_2:+45341548 | None:intergenic |
| AAATTGCCTTACAGAGAAAT+AGG | 0.329324 | 2_2:-45344386 | Msa0253500:five_prime_UTR |
| TGGTTGTATTTCAGATTCTA+AGG | 0.349361 | 2_2:-45343919 | Msa0253500:intron |
| ATTTACCAGTCCAATCTCTT+TGG | 0.350634 | 2_2:-45340440 | Msa0253500:three_prime_UTR |
| CATTGGATGGATAACATAAC+AGG | 0.356481 | 2_2:-45340281 | Msa0253500:three_prime_UTR |
| AATAGATTCAGATGTGTAGA+TGG | 0.376969 | 2_2:-45340205 | Msa0253500:three_prime_UTR |
| TATTGTATAATGGTAATTAT+AGG | 0.382639 | 2_2:-45344306 | Msa0253500:exon |
| TTTGATTCTCACAACATTTG+TGG | 0.382997 | 2_2:+45340364 | None:intergenic |
| GCAAGTTCAGCCAAAGAGAT+TGG | 0.383239 | 2_2:+45340430 | None:intergenic |
| AAGAGAGTTACGTGAAAGAT+AGG | 0.387671 | 2_2:-45344335 | Msa0253500:five_prime_UTR |
| GCTTGCTGGCGTTTCACATA+AGG | 0.393152 | 2_2:-45341736 | Msa0253500:intron |
| TCTTTGAGCTTTACTAGTAT+TGG | 0.394056 | 2_2:+45344158 | None:intergenic |
| GCATTAGTCCTTCCAGAATC+AGG | 0.399144 | 2_2:-45341819 | Msa0253500:CDS |
| TTGGTGTCTTAGGTACCTAT+TGG | 0.405861 | 2_2:-45340616 | Msa0253500:intron |
| GGAGGACATAATCATACAAC+CGG | 0.408180 | 2_2:+45344031 | None:intergenic |
| TTCTTCATTATGCAGTTCTC+AGG | 0.409880 | 2_2:+45340400 | None:intergenic |
| ATAATAGGTGTCTCCTGATC+AGG | 0.424494 | 2_2:-45342505 | Msa0253500:intron |
| CTAGAATTTCTAATTATGAA+TGG | 0.426859 | 2_2:-45341547 | Msa0253500:CDS |
| ATTTGAATTATGCAACAACT+TGG | 0.430353 | 2_2:-45344188 | Msa0253500:CDS |
| AAGAAGTATTATCAGCTTGC+TGG | 0.435483 | 2_2:-45341750 | Msa0253500:CDS |
| GCCAGTAGTTGTGCCTGATC+AGG | 0.436714 | 2_2:+45342492 | None:intergenic |
| TCCTGATCAGGCACAACTAC+TGG | 0.443207 | 2_2:-45342493 | Msa0253500:CDS |
| ATTAACTTGGTGTTTCATCA+TGG | 0.444634 | 2_2:-45344267 | Msa0253500:CDS |
| CTGTTCCAGGTGAGGATTGG+AGG | 0.447610 | 2_2:-45340934 | Msa0253500:intron |
| TCTACGCATAAAGCTACAAA+AGG | 0.450071 | 2_2:+45344439 | None:intergenic |
| TTTGAATTATGCAACAACTT+GGG | 0.452984 | 2_2:-45344187 | Msa0253500:CDS |
| TTGTAATTGATAATGTCCTT+TGG | 0.454375 | 2_2:-45340906 | Msa0253500:CDS |
| ATGAGAATGTTTCCATTGGA+TGG | 0.468886 | 2_2:-45340294 | Msa0253500:three_prime_UTR |
| TAAGCGTGTAAGCATCAGTA+TGG | 0.471614 | 2_2:-45340730 | Msa0253500:intron |
| CTTACAGAGAAATAGGCAAA+AGG | 0.473921 | 2_2:-45344379 | Msa0253500:five_prime_UTR |
| ATTGTCATCCCATCTCCAAT+AGG | 0.475142 | 2_2:+45340601 | None:intergenic |
| CATTGCAATTGAACCATTCA+GGG | 0.477059 | 2_2:-45340531 | Msa0253500:three_prime_UTR |
| TAGGTTAGTGTATTGTATAA+TGG | 0.480206 | 2_2:-45344316 | Msa0253500:exon |
| TATAATGAGAATGTTTCCAT+TGG | 0.483839 | 2_2:-45340298 | Msa0253500:three_prime_UTR |
| CTAATTATGAATGGTGAAGC+TGG | 0.488384 | 2_2:-45341538 | Msa0253500:CDS |
| AGTAAAGCTCAAAGATTGAA+AGG | 0.493916 | 2_2:-45344150 | Msa0253500:CDS |
| ATAAGTATAATTACCCTGAA+TGG | 0.494711 | 2_2:+45340518 | None:intergenic |
| TGATGGGAGATACCTGCATC+TGG | 0.495028 | 2_2:+45343861 | None:intergenic |
| CATTTATTGATGCTGAGAAA+AGG | 0.495349 | 2_2:-45341100 | Msa0253500:CDS |
| ATTCATAATTAGAAATTCTA+GGG | 0.503168 | 2_2:+45341549 | None:intergenic |
| TCTTAGGTACCTATTGGAGA+TGG | 0.503427 | 2_2:-45340610 | Msa0253500:intron |
| TACTAGGTGGATGTAAAACT+TGG | 0.505836 | 2_2:-45341586 | Msa0253500:intron |
| AGATTTGGCATCTCTTTCAC+AGG | 0.510023 | 2_2:+45341785 | None:intergenic |
| TTAACTTGGTGTTTCATCAT+GGG | 0.511784 | 2_2:-45344266 | Msa0253500:CDS |
| TTGAATTATGCAACAACTTG+GGG | 0.512983 | 2_2:-45344186 | Msa0253500:CDS |
| AATCTCTTTGGCTGAACTTG+CGG | 0.515461 | 2_2:-45340428 | Msa0253500:three_prime_UTR |
| GACAAATAGTAGCATTAACT+TGG | 0.515595 | 2_2:-45344280 | Msa0253500:CDS |
| GTGAACTGAATCCTAAAGAG+TGG | 0.523511 | 2_2:+45344462 | None:intergenic |
| GCAGAACGGTGTATTGAAGT+TGG | 0.528745 | 2_2:-45342447 | Msa0253500:CDS |
| ATGGATAACATAACAGGTGC+AGG | 0.533304 | 2_2:-45340275 | Msa0253500:three_prime_UTR |
| CACATCTGAATCTATTTCCC+AGG | 0.533699 | 2_2:+45340212 | None:intergenic |
| TTACAGAGAAATAGGCAAAA+GGG | 0.543712 | 2_2:-45344378 | Msa0253500:five_prime_UTR |
| GTAAAGCTCAAAGATTGAAA+GGG | 0.544679 | 2_2:-45344149 | Msa0253500:CDS |
| GCAATTTCACAAACACTTGG+TGG | 0.545870 | 2_2:+45344402 | None:intergenic |
| GTGCTGTTCCAGGTGAGGAT+TGG | 0.549400 | 2_2:-45340937 | Msa0253500:intron |
| CTTAGGTACCTATTGGAGAT+GGG | 0.550007 | 2_2:-45340609 | Msa0253500:intron |
| TATGCATGGAAGCCAGATGC+AGG | 0.552563 | 2_2:-45343873 | Msa0253500:intron |
| CCATTTATTTACCAACGGAT+CGG | 0.554596 | 2_2:+45340870 | None:intergenic |
| AATAACAATCTCATTACTGA+TGG | 0.556669 | 2_2:+45344101 | None:intergenic |
| CTGTTATGTTATCCATCCAA+TGG | 0.558616 | 2_2:+45340282 | None:intergenic |
| CACTAGTGAGACCTTGTGCA+AGG | 0.561324 | 2_2:-45344215 | Msa0253500:CDS |
| ATTGATAATGTCCTTTGGCA+TGG | 0.562307 | 2_2:-45340901 | Msa0253500:CDS |
| CAATTTCACAAACACTTGGT+GGG | 0.576133 | 2_2:+45344403 | None:intergenic |
| TGGAAAAGTTGCCGATCCGT+TGG | 0.582541 | 2_2:-45340881 | Msa0253500:intron |
| TGCAGATTCTTGGAGCAGAA+CGG | 0.585514 | 2_2:-45342461 | Msa0253500:CDS |
| TTATGAATGGTGAAGCTGGA+AGG | 0.590746 | 2_2:-45341534 | Msa0253500:intron |
| ATAGATTCAGATGTGTAGAT+GGG | 0.598351 | 2_2:-45340204 | Msa0253500:three_prime_UTR |
| TCTTTGGCTGAACTTGCGGA+AGG | 0.599147 | 2_2:-45340424 | Msa0253500:three_prime_UTR |
| CAAATGTTGTGAGAATCAAA+CGG | 0.601007 | 2_2:-45340361 | Msa0253500:three_prime_UTR |
| CTACGCATAAAGCTACAAAA+GGG | 0.603292 | 2_2:+45344440 | None:intergenic |
| GCGGAGACTGCATCTATGCA+TGG | 0.604771 | 2_2:-45343887 | Msa0253500:CDS |
| CTGAATCTATTTCCCAGGCT+AGG | 0.613420 | 2_2:+45340217 | None:intergenic |
| AAGGCAATTTCACAAACACT+TGG | 0.623522 | 2_2:+45344399 | None:intergenic |
| GATTCTAAGGCAGTTGCGAG+CGG | 0.634084 | 2_2:-45343906 | Msa0253500:CDS |
| AGTGAAGTTACATGTTCATG+AGG | 0.637993 | 2_2:+45344234 | None:intergenic |
| GAGATGGGATGACAATCTGT+CGG | 0.642936 | 2_2:-45340594 | Msa0253500:CDS |
| CCAAAATGTTCGTGAACCAG+AGG | 0.644138 | 2_2:-45344010 | Msa0253500:intron |
| TTCAGCCAAAGAGATTGGAC+TGG | 0.644466 | 2_2:+45340435 | None:intergenic |
| TGAACTGAATCCTAAAGAGT+GGG | 0.647165 | 2_2:+45344463 | None:intergenic |
| TTCAAATTAAACCTTGCACA+AGG | 0.652684 | 2_2:+45344204 | None:intergenic |
| AGGTTGTTAGTCTTACGCCC+CGG | 0.659105 | 2_2:-45344050 | Msa0253500:CDS |
| CTAAACGACCTGATTCTGGA+AGG | 0.659892 | 2_2:+45341811 | None:intergenic |
| GAGGACATAATCATACAACC+GGG | 0.716196 | 2_2:+45344032 | None:intergenic |
| AGGACATAATCATACAACCG+GGG | 0.774142 | 2_2:+45344033 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTATTATTATTTTT+TGG | + | chr2_2:45341929-45341948 | None:intergenic | 0.0% |
| !! | TATTGTATAATGGTAATTAT+AGG | - | chr2_2:45340491-45340510 | Msa0253500:three_prime_UTR | 15.0% |
| !! | AAGAATTTATAAATCATGTA+TGG | + | chr2_2:45341131-45341150 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAATTGTGAAATT+TGG | - | chr2_2:45342131-45342150 | Msa0253500:intron | 15.0% |
| !! | TAAATTGTCTTAATCTTAAT+AGG | - | chr2_2:45342497-45342516 | Msa0253500:CDS | 15.0% |
| !! | AAATTGTCTTAATCTTAATA+GGG | - | chr2_2:45342498-45342517 | Msa0253500:CDS | 15.0% |
| !! | AAATCTTTCTATATTATCAT+AGG | + | chr2_2:45342723-45342742 | None:intergenic | 15.0% |
| !!! | AGTTTTAATTTAATGATACT+AGG | - | chr2_2:45343195-45343214 | Msa0253500:intron | 15.0% |
| !! | ATTCATAATTAGAAATTCTA+GGG | + | chr2_2:45343251-45343270 | None:intergenic | 15.0% |
| !! | GTATTAGTAATTAGAAAAAA+TGG | + | chr2_2:45344103-45344122 | None:intergenic | 15.0% |
| !! | AATTTGCATAACAAAATGAT+GGG | + | chr2_2:45340955-45340974 | None:intergenic | 20.0% |
| !! | AAATTTGCATAACAAAATGA+TGG | + | chr2_2:45340956-45340975 | None:intergenic | 20.0% |
| !! | GAAAATTTAACTCTTTGATT+AGG | + | chr2_2:45341503-45341522 | None:intergenic | 20.0% |
| !!! | TTTTTTAAACTACCAAATGT+AGG | + | chr2_2:45341576-45341595 | None:intergenic | 20.0% |
| !!! | TTTGATTTTAGGATTTAAGT+CGG | - | chr2_2:45342086-45342105 | Msa0253500:intron | 20.0% |
| !! | TGATACATTGTCTTTATAAT+AGG | - | chr2_2:45342277-45342296 | Msa0253500:intron | 20.0% |
| !! | GTTTACTCTTTAGATTAAAA+TGG | + | chr2_2:45342699-45342718 | None:intergenic | 20.0% |
| !!! | ATTATATTGTTAATTTGACC+AGG | - | chr2_2:45342935-45342954 | Msa0253500:intron | 20.0% |
| !!! | TTATATTGTTAATTTGACCA+GGG | - | chr2_2:45342936-45342955 | Msa0253500:intron | 20.0% |
| !!! | TTTAATTTAATGATACTAGG+TGG | - | chr2_2:45343198-45343217 | Msa0253500:intron | 20.0% |
| !! | CATTCATAATTAGAAATTCT+AGG | + | chr2_2:45343252-45343271 | None:intergenic | 20.0% |
| !! | CTAGAATTTCTAATTATGAA+TGG | - | chr2_2:45343250-45343269 | Msa0253500:intron | 20.0% |
| !! | AATAAACTAAAAACAGCTTA+TGG | + | chr2_2:45343382-45343401 | None:intergenic | 20.0% |
| !!! | TTTATTTTGATAAGCTATCT+AGG | - | chr2_2:45343396-45343415 | Msa0253500:intron | 20.0% |
| !!! | GTTATTTCTATATCAAAAGA+CGG | + | chr2_2:45343473-45343492 | None:intergenic | 20.0% |
| !!! | TTTGATATGTTCTCTTTTTT+AGG | - | chr2_2:45343578-45343597 | Msa0253500:intron | 20.0% |
| !!! | TTGATATGTTCTCTTTTTTA+GGG | - | chr2_2:45343579-45343598 | Msa0253500:intron | 20.0% |
| !! | CTAATTAACATCATATAGTT+AGG | + | chr2_2:45343622-45343641 | None:intergenic | 20.0% |
| !!! | GCATTAGAAATTTTAATCAA+CGG | - | chr2_2:45344033-45344052 | Msa0253500:CDS | 20.0% |
| !!! | AAATTTTAATCAACGGTTAA+TGG | - | chr2_2:45344040-45344059 | Msa0253500:CDS | 20.0% |
| ! | TAGGTTAGTGTATTGTATAA+TGG | - | chr2_2:45340481-45340500 | Msa0253500:three_prime_UTR | 25.0% |
| ! | ATTTGAATTATGCAACAACT+TGG | - | chr2_2:45340609-45340628 | Msa0253500:intron | 25.0% |
| ! | TTTGAATTATGCAACAACTT+GGG | - | chr2_2:45340610-45340629 | Msa0253500:intron | 25.0% |
| ! | AATAACAATCTCATTACTGA+TGG | + | chr2_2:45340699-45340718 | None:intergenic | 25.0% |
| ! | ATTGCTAGTGATGAAAAATA+TGG | - | chr2_2:45340716-45340735 | Msa0253500:intron | 25.0% |
| ! | TATCACATATGATCAACAAA+AGG | + | chr2_2:45340853-45340872 | None:intergenic | 25.0% |
| ! | TGTACAAACATCAAACAATT+TGG | + | chr2_2:45341001-45341020 | None:intergenic | 25.0% |
| !! | ATTCAAAACTACTAGTTTCT+TGG | + | chr2_2:45341184-45341203 | None:intergenic | 25.0% |
| ! | ATCCTATCTTATATTTGAGA+TGG | - | chr2_2:45341369-45341388 | Msa0253500:intron | 25.0% |
| ! | ATCCATCTCAAATATAAGAT+AGG | + | chr2_2:45341374-45341393 | None:intergenic | 25.0% |
| !! | AGGTTTGTTCTAATGTTTAT+GGG | + | chr2_2:45341556-45341575 | None:intergenic | 25.0% |
| !! | TAGGTTTGTTCTAATGTTTA+TGG | + | chr2_2:45341557-45341576 | None:intergenic | 25.0% |
| !! | TTGGTAGTTTAAAAAACAAG+AGG | - | chr2_2:45341580-45341599 | Msa0253500:CDS | 25.0% |
| !!! | GCTAATTACCTTATTAGTTT+TGG | - | chr2_2:45341721-45341740 | Msa0253500:intron | 25.0% |
| !!! | TTGATTTTAGGATTTAAGTC+GGG | - | chr2_2:45342087-45342106 | Msa0253500:intron | 25.0% |
| !! | AGCACAATCATTTATTTCTT+CGG | + | chr2_2:45342157-45342176 | None:intergenic | 25.0% |
| !! | CAACATTTTTACTTCATAGA+AGG | + | chr2_2:45342256-45342275 | None:intergenic | 25.0% |
| !!! | TCCTTTATTTTTCACAGTAT+AGG | - | chr2_2:45342388-45342407 | Msa0253500:intron | 25.0% |
| ! | TATGTAGAACAAGATCTAAT+TGG | + | chr2_2:45342446-45342465 | None:intergenic | 25.0% |
| ! | ATTAGATCTTGTTCTACATA+TGG | - | chr2_2:45342446-45342465 | Msa0253500:CDS | 25.0% |
| !! | GTCTCTATAACCTTAATTTT+TGG | - | chr2_2:45342610-45342629 | Msa0253500:intron | 25.0% |
| ! | TGAGTTTCATCCAAAAATTA+AGG | + | chr2_2:45342623-45342642 | None:intergenic | 25.0% |
| ! | ATAACAAAAGTAACTCCAAA+GGG | + | chr2_2:45342669-45342688 | None:intergenic | 25.0% |
| ! | TATAACAAAAGTAACTCCAA+AGG | + | chr2_2:45342670-45342689 | None:intergenic | 25.0% |
| ! | AACAATGATGTGCATATTAT+AGG | - | chr2_2:45342849-45342868 | Msa0253500:intron | 25.0% |
| ! | ATTAAAACTTCAGAGAATTC+AGG | + | chr2_2:45343184-45343203 | None:intergenic | 25.0% |
| ! | ATTAAGTAGTTTATCCAAAC+AGG | - | chr2_2:45343509-45343528 | Msa0253500:intron | 25.0% |
| !!! | TTGTAATTGATAATGTCCTT+TGG | - | chr2_2:45343891-45343910 | Msa0253500:CDS | 25.0% |
| !! | ATATGATATATCGTCTCTTT+TGG | - | chr2_2:45344162-45344181 | Msa0253500:CDS | 25.0% |
| ! | ATAAGTATAATTACCCTGAA+TGG | + | chr2_2:45344282-45344301 | None:intergenic | 25.0% |
| ! | TATAATGAGAATGTTTCCAT+TGG | - | chr2_2:45344499-45344518 | Msa0253500:five_prime_UTR | 25.0% |
| AAATTGCCTTACAGAGAAAT+AGG | - | chr2_2:45340411-45340430 | Msa0253500:three_prime_UTR | 30.0% | |
| TTACAGAGAAATAGGCAAAA+GGG | - | chr2_2:45340419-45340438 | Msa0253500:three_prime_UTR | 30.0% | |
| !! | CAAAAGGGCTTTTAAGAATA+AGG | - | chr2_2:45340434-45340453 | Msa0253500:three_prime_UTR | 30.0% |
| GACAAATAGTAGCATTAACT+TGG | - | chr2_2:45340517-45340536 | Msa0253500:three_prime_UTR | 30.0% | |
| !! | ATTAACTTGGTGTTTCATCA+TGG | - | chr2_2:45340530-45340549 | Msa0253500:three_prime_UTR | 30.0% |
| !! | TTAACTTGGTGTTTCATCAT+GGG | - | chr2_2:45340531-45340550 | Msa0253500:three_prime_UTR | 30.0% |
| TTCAAATTAAACCTTGCACA+AGG | + | chr2_2:45340596-45340615 | None:intergenic | 30.0% | |
| TTGAATTATGCAACAACTTG+GGG | - | chr2_2:45340611-45340630 | Msa0253500:intron | 30.0% | |
| TCTTTGAGCTTTACTAGTAT+TGG | + | chr2_2:45340642-45340661 | None:intergenic | 30.0% | |
| AGTAAAGCTCAAAGATTGAA+AGG | - | chr2_2:45340647-45340666 | Msa0253500:intron | 30.0% | |
| GTAAAGCTCAAAGATTGAAA+GGG | - | chr2_2:45340648-45340667 | Msa0253500:intron | 30.0% | |
| TGAAAAATATGGCAATAAGC+AGG | - | chr2_2:45340727-45340746 | Msa0253500:intron | 30.0% | |
| GAAAGTAGTGGTATACAAAT+GGG | + | chr2_2:45340831-45340850 | None:intergenic | 30.0% | |
| TGATCATATGTGATATCGAT+TGG | - | chr2_2:45340858-45340877 | Msa0253500:intron | 30.0% | |
| TGGTTGTATTTCAGATTCTA+AGG | - | chr2_2:45340878-45340897 | Msa0253500:intron | 30.0% | |
| !!! | AACTAGTAGTTTTGAATCAG+TGG | - | chr2_2:45341187-45341206 | Msa0253500:intron | 30.0% |
| TCTGTATATTCATAGTGACA+AGG | + | chr2_2:45341235-45341254 | None:intergenic | 30.0% | |
| ! | TTGAAGTTTTCACCTTTCAA+GGG | + | chr2_2:45341264-45341283 | None:intergenic | 30.0% |
| ! | ATTGAAGTTTTCACCTTTCA+AGG | + | chr2_2:45341265-45341284 | None:intergenic | 30.0% |
| ! | GGTTTGTTCTAATGTTTATG+GGG | + | chr2_2:45341555-45341574 | None:intergenic | 30.0% |
| CATTAGAACAAACCTACATT+TGG | - | chr2_2:45341561-45341580 | Msa0253500:CDS | 30.0% | |
| GTACTGCAAAAAATGTATCT+TGG | + | chr2_2:45341683-45341702 | None:intergenic | 30.0% | |
| TAATTAGCAATCAAATACGC+GGG | + | chr2_2:45341709-45341728 | None:intergenic | 30.0% | |
| GTAATTAGCAATCAAATACG+CGG | + | chr2_2:45341710-45341729 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | - | chr2_2:45341832-45341851 | Msa0253500:CDS | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+TGG | - | chr2_2:45341845-45341864 | Msa0253500:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | chr2_2:45341867-45341886 | Msa0253500:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | - | chr2_2:45341832-45341851 | Msa0253500:CDS | 30.0% | |
| !! | GTCGCAAAATCTTTGATTTT+AGG | - | chr2_2:45342075-45342094 | Msa0253500:intron | 30.0% |
| GCCTATACTGTGAAAAATAA+AGG | + | chr2_2:45342392-45342411 | None:intergenic | 30.0% | |
| ATAGTTAATAAATGCCGTGT+GGG | + | chr2_2:45342564-45342583 | None:intergenic | 30.0% | |
| AATATGTATGTGATACCCTT+TGG | - | chr2_2:45342651-45342670 | Msa0253500:intron | 30.0% | |
| TCTTTGCAGATTATGATGAA+CGG | - | chr2_2:45342770-45342789 | Msa0253500:intron | 30.0% | |
| ! | CATGCCAAGATTTTTAAACT+TGG | - | chr2_2:45342886-45342905 | Msa0253500:intron | 30.0% |
| GATGCCAAGTTTAAAAATCT+TGG | + | chr2_2:45342893-45342912 | None:intergenic | 30.0% | |
| TCTTTCTTTAGTAACTGATG+AGG | - | chr2_2:45342911-45342930 | Msa0253500:intron | 30.0% | |
| ! | CTTATGCTTTTGATCTCATA+AGG | - | chr2_2:45343088-45343107 | Msa0253500:intron | 30.0% |
| TATATTTCCAAGTGAAAGTG+TGG | + | chr2_2:45343132-45343151 | None:intergenic | 30.0% | |
| TCAAATAAGCTAGTTCAAAC+AGG | + | chr2_2:45343316-45343335 | None:intergenic | 30.0% | |
| ACTTGAACAAGATATGAGAA+TGG | - | chr2_2:45343344-45343363 | Msa0253500:intron | 30.0% | |
| GAAATCATAGCTGCATAAAA+AGG | + | chr2_2:45343676-45343695 | None:intergenic | 30.0% | |
| CATTTATTGATGCTGAGAAA+AGG | - | chr2_2:45343697-45343716 | Msa0253500:intron | 30.0% | |
| GCATTATAAAATAGCCAACA+TGG | - | chr2_2:45343762-45343781 | Msa0253500:intron | 30.0% | |
| TATTACAGATTGAACCATGT+TGG | + | chr2_2:45343779-45343798 | None:intergenic | 30.0% | |
| ! | GAACTGGTATAACAACTTTT+GGG | + | chr2_2:45343830-45343849 | None:intergenic | 30.0% |
| ! | TGAACTGGTATAACAACTTT+TGG | + | chr2_2:45343831-45343850 | None:intergenic | 30.0% |
| TGAAGCCATTTATTTACCAA+CGG | + | chr2_2:45343935-45343954 | None:intergenic | 30.0% | |
| AATACACTTCCAATACACTT+AGG | - | chr2_2:45344118-45344137 | Msa0253500:CDS | 30.0% | |
| ATACACTTCCAATACACTTA+GGG | - | chr2_2:45344119-45344138 | Msa0253500:CDS | 30.0% | |
| TTTGATTCTCACAACATTTG+TGG | + | chr2_2:45344436-45344455 | None:intergenic | 30.0% | |
| CAAATGTTGTGAGAATCAAA+CGG | - | chr2_2:45344436-45344455 | Msa0253500:five_prime_UTR | 30.0% | |
| AATAGATTCAGATGTGTAGA+TGG | - | chr2_2:45344592-45344611 | Msa0253500:five_prime_UTR | 30.0% | |
| ! | TATTTTCTGTTGACGCACTT+AGG | + | chr2_2:45340273-45340292 | None:intergenic | 35.0% |
| TGAACTGAATCCTAAAGAGT+GGG | + | chr2_2:45340337-45340356 | None:intergenic | 35.0% | |
| CTACGCATAAAGCTACAAAA+GGG | + | chr2_2:45340360-45340379 | None:intergenic | 35.0% | |
| TCTACGCATAAAGCTACAAA+AGG | + | chr2_2:45340361-45340380 | None:intergenic | 35.0% | |
| CAATTTCACAAACACTTGGT+GGG | + | chr2_2:45340397-45340416 | None:intergenic | 35.0% | |
| AAGGCAATTTCACAAACACT+TGG | + | chr2_2:45340401-45340420 | None:intergenic | 35.0% | |
| !! | CTTTTGCCTATTTCTCTGTA+AGG | + | chr2_2:45340420-45340439 | None:intergenic | 35.0% |
| CTTACAGAGAAATAGGCAAA+AGG | - | chr2_2:45340418-45340437 | Msa0253500:three_prime_UTR | 35.0% | |
| AAGAGAGTTACGTGAAAGAT+AGG | - | chr2_2:45340462-45340481 | Msa0253500:three_prime_UTR | 35.0% | |
| AGTGAAGTTACATGTTCATG+AGG | + | chr2_2:45340566-45340585 | None:intergenic | 35.0% | |
| GGAAAGTAGTGGTATACAAA+TGG | + | chr2_2:45340832-45340851 | None:intergenic | 35.0% | |
| GATCAACAAAAGGAAAGTAG+TGG | + | chr2_2:45340843-45340862 | None:intergenic | 35.0% | |
| TATTCACACAGTTCACTCAT+TGG | - | chr2_2:45340975-45340994 | Msa0253500:intron | 35.0% | |
| !!! | CTGCACTTTTGGTTTTATGT+CGG | - | chr2_2:45341053-45341072 | Msa0253500:intron | 35.0% |
| ! | ATTCTTCGAAGTAGTTGATG+TGG | - | chr2_2:45341145-45341164 | Msa0253500:intron | 35.0% |
| !!! | TAGTTTTGAATCAGTGGAGT+TGG | - | chr2_2:45341193-45341212 | Msa0253500:intron | 35.0% |
| !!! | GGAGTTGGTTTTGAACATAT+TGG | - | chr2_2:45341208-45341227 | Msa0253500:intron | 35.0% |
| TACAGAAAATGTCCCTTGAA+AGG | - | chr2_2:45341249-45341268 | Msa0253500:intron | 35.0% | |
| TTGGTAGACATGATTGGATA+AGG | - | chr2_2:45341301-45341320 | Msa0253500:intron | 35.0% | |
| CATGATTGGATAAGGATGAA+TGG | - | chr2_2:45341309-45341328 | Msa0253500:intron | 35.0% | |
| AAGGATGAATGGATAAGAGT+AGG | - | chr2_2:45341320-45341339 | Msa0253500:intron | 35.0% | |
| GACAGACACCAAAACTAATA+AGG | + | chr2_2:45341732-45341751 | None:intergenic | 35.0% | |
| TCAATATCTTGTCCATGCTA+TGG | - | chr2_2:45341752-45341771 | Msa0253500:CDS | 35.0% | |
| CATGCTATGGTTGTCAAAAT+CGG | - | chr2_2:45341765-45341784 | Msa0253500:CDS | 35.0% | |
| ATGCTATGGTTGTCAAAATC+GGG | - | chr2_2:45341766-45341785 | Msa0253500:CDS | 35.0% | |
| TCGAAAGGGAATAGCAAAAT+CGG | - | chr2_2:45341802-45341821 | Msa0253500:CDS | 35.0% | |
| CTGTAAACTCGCAATCAAAA+TGG | - | chr2_2:45341893-45341912 | Msa0253500:intron | 35.0% | |
| AAACTCGCAATCAAAATGGA+TGG | - | chr2_2:45341897-45341916 | Msa0253500:intron | 35.0% | |
| !! | TCGATGGATTTTGCTTAGTT+TGG | - | chr2_2:45342014-45342033 | Msa0253500:intron | 35.0% |
| !! | CGATGGATTTTGCTTAGTTT+GGG | - | chr2_2:45342015-45342034 | Msa0253500:intron | 35.0% |
| ! | CTTAGTTTGGGATTCTACTA+TGG | - | chr2_2:45342027-45342046 | Msa0253500:intron | 35.0% |
| CTATGGATTTAAGTCGTTGA+AGG | - | chr2_2:45342044-45342063 | Msa0253500:intron | 35.0% | |
| TTACTTCATAGAAGGCAAGT+GGG | + | chr2_2:45342248-45342267 | None:intergenic | 35.0% | |
| TTTACTTCATAGAAGGCAAG+TGG | + | chr2_2:45342249-45342268 | None:intergenic | 35.0% | |
| CATAGTTAATAAATGCCGTG+TGG | + | chr2_2:45342565-45342584 | None:intergenic | 35.0% | |
| ! | TCTGAAGAGTACACAAATGA+AGG | + | chr2_2:45342590-45342609 | None:intergenic | 35.0% |
| CTTAGCAACATCAAGAGATT+TGG | + | chr2_2:45343030-45343049 | None:intergenic | 35.0% | |
| !! | AAGAAGTATTATCAGCTTGC+TGG | - | chr2_2:45343047-45343066 | Msa0253500:intron | 35.0% |
| TACTAGGTGGATGTAAAACT+TGG | - | chr2_2:45343211-45343230 | Msa0253500:intron | 35.0% | |
| CTAATTATGAATGGTGAAGC+TGG | - | chr2_2:45343259-45343278 | Msa0253500:intron | 35.0% | |
| !!! | TTTTGAGATGCTACTACAAC+TGG | - | chr2_2:45343734-45343753 | Msa0253500:intron | 35.0% |
| !! | ATTGATAATGTCCTTTGGCA+TGG | - | chr2_2:45343896-45343915 | Msa0253500:CDS | 35.0% |
| CCATTTATTTACCAACGGAT+CGG | + | chr2_2:45343930-45343949 | None:intergenic | 35.0% | |
| AGAAGTCAAGGTCATTTAAC+TGG | + | chr2_2:45343975-45343994 | None:intergenic | 35.0% | |
| ACATGGTACATTAGAAGTCA+AGG | + | chr2_2:45343987-45344006 | None:intergenic | 35.0% | |
| TCATTGCAATTGAACCATTC+AGG | - | chr2_2:45344265-45344284 | Msa0253500:CDS | 35.0% | |
| CATTGCAATTGAACCATTCA+GGG | - | chr2_2:45344266-45344285 | Msa0253500:CDS | 35.0% | |
| ATTTACCAGTCCAATCTCTT+TGG | - | chr2_2:45344357-45344376 | Msa0253500:five_prime_UTR | 35.0% | |
| TTCTTCATTATGCAGTTCTC+AGG | + | chr2_2:45344400-45344419 | None:intergenic | 35.0% | |
| ATGAGAATGTTTCCATTGGA+TGG | - | chr2_2:45344503-45344522 | Msa0253500:five_prime_UTR | 35.0% | |
| CTGTTATGTTATCCATCCAA+TGG | + | chr2_2:45344518-45344537 | None:intergenic | 35.0% | |
| CATTGGATGGATAACATAAC+AGG | - | chr2_2:45344516-45344535 | Msa0253500:five_prime_UTR | 35.0% | |
| GTGAACTGAATCCTAAAGAG+TGG | + | chr2_2:45340338-45340357 | None:intergenic | 40.0% | |
| GCAATTTCACAAACACTTGG+TGG | + | chr2_2:45340398-45340417 | None:intergenic | 40.0% | |
| AGGACATAATCATACAACCG+GGG | + | chr2_2:45340767-45340786 | None:intergenic | 40.0% | |
| GAGGACATAATCATACAACC+GGG | + | chr2_2:45340768-45340787 | None:intergenic | 40.0% | |
| GGAGGACATAATCATACAAC+CGG | + | chr2_2:45340769-45340788 | None:intergenic | 40.0% | |
| TATGTCTTCGCTATGCAAGT+TGG | - | chr2_2:45341022-45341041 | Msa0253500:intron | 40.0% | |
| ATGTCTTCGCTATGCAAGTT+GGG | - | chr2_2:45341023-45341042 | Msa0253500:intron | 40.0% | |
| TCTACCAAACAGGGACTTTA+CGG | + | chr2_2:45341289-45341308 | None:intergenic | 40.0% | |
| CCAATCATGTCTACCAAACA+GGG | + | chr2_2:45341298-45341317 | None:intergenic | 40.0% | |
| TCCAATCATGTCTACCAAAC+AGG | + | chr2_2:45341299-45341318 | None:intergenic | 40.0% | |
| !! | CGATTTTGACAACCATAGCA+TGG | + | chr2_2:45341767-45341786 | None:intergenic | 40.0% |
| CAAAATCGGGACTTTACTTC+AGG | - | chr2_2:45341779-45341798 | Msa0253500:CDS | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | - | chr2_2:45341788-45341807 | Msa0253500:CDS | 40.0% | |
| CGAAAGGGAATAGCAAAATC+GGG | - | chr2_2:45341803-45341822 | Msa0253500:CDS | 40.0% | |
| ATAATAGGTGTCTCCTGATC+AGG | - | chr2_2:45342292-45342311 | Msa0253500:intron | 40.0% | |
| AGACATTCATGTAACCCACA+CGG | - | chr2_2:45342547-45342566 | Msa0253500:intron | 40.0% | |
| AGATTTGGCATCTCTTTCAC+AGG | + | chr2_2:45343015-45343034 | None:intergenic | 40.0% | |
| TGTAGTTCCACACTTTCACT+TGG | - | chr2_2:45343122-45343141 | Msa0253500:intron | 40.0% | |
| TTATGAATGGTGAAGCTGGA+AGG | - | chr2_2:45343263-45343282 | Msa0253500:intron | 40.0% | |
| TCCTCATTAGACTGTAGTGT+TGG | - | chr2_2:45343542-45343561 | Msa0253500:intron | 40.0% | |
| CCTCATTAGACTGTAGTGTT+GGG | - | chr2_2:45343543-45343562 | Msa0253500:intron | 40.0% | |
| !! | TTTTGGGAAACAGAGTTGGA+AGG | + | chr2_2:45343814-45343833 | None:intergenic | 40.0% |
| !! | CAACTTTTGGGAAACAGAGT+TGG | + | chr2_2:45343818-45343837 | None:intergenic | 40.0% |
| ! | CCGATCCGTTGGTAAATAAA+TGG | - | chr2_2:45343927-45343946 | Msa0253500:intron | 40.0% |
| ACTTCTAATGTACCATGTGC+AGG | - | chr2_2:45343989-45344008 | Msa0253500:intron | 40.0% | |
| TAAGCGTGTAAGCATCAGTA+TGG | - | chr2_2:45344067-45344086 | Msa0253500:CDS | 40.0% | |
| GAATCTCTCCCTAAGTGTAT+TGG | + | chr2_2:45344130-45344149 | None:intergenic | 40.0% | |
| !!! | ATCGTCTCTTTTGGTGTCTT+AGG | - | chr2_2:45344171-45344190 | Msa0253500:CDS | 40.0% |
| ! | TTGGTGTCTTAGGTACCTAT+TGG | - | chr2_2:45344181-45344200 | Msa0253500:CDS | 40.0% |
| TCTTAGGTACCTATTGGAGA+TGG | - | chr2_2:45344187-45344206 | Msa0253500:CDS | 40.0% | |
| CTTAGGTACCTATTGGAGAT+GGG | - | chr2_2:45344188-45344207 | Msa0253500:CDS | 40.0% | |
| ATTGTCATCCCATCTCCAAT+AGG | + | chr2_2:45344199-45344218 | None:intergenic | 40.0% | |
| AATCTCTTTGGCTGAACTTG+CGG | - | chr2_2:45344369-45344388 | Msa0253500:five_prime_UTR | 40.0% | |
| ATGGATAACATAACAGGTGC+AGG | - | chr2_2:45344522-45344541 | Msa0253500:five_prime_UTR | 40.0% | |
| !! | TTTTTCTAAGAGCCTAGCCT+GGG | - | chr2_2:45344568-45344587 | Msa0253500:five_prime_UTR | 40.0% |
| CACATCTGAATCTATTTCCC+AGG | + | chr2_2:45344588-45344607 | None:intergenic | 40.0% | |
| ! | CTGGTTCACGAACATTTTGG+AGG | + | chr2_2:45340787-45340806 | None:intergenic | 45.0% |
| !! | CCTCTGGTTCACGAACATTT+TGG | + | chr2_2:45340790-45340809 | None:intergenic | 45.0% |
| CCAAAATGTTCGTGAACCAG+AGG | - | chr2_2:45340787-45340806 | Msa0253500:CDS | 45.0% | |
| TGAACCAGAGGTGAGAATTG+AGG | - | chr2_2:45340799-45340818 | Msa0253500:intron | 45.0% | |
| TCTTCCTCAATTCTCACCTC+TGG | + | chr2_2:45340806-45340825 | None:intergenic | 45.0% | |
| TGTCTTCGCTATGCAAGTTG+GGG | - | chr2_2:45341024-45341043 | Msa0253500:intron | 45.0% | |
| ! | TGGGGTTTCTACTGCACTTT+TGG | - | chr2_2:45341042-45341061 | Msa0253500:intron | 45.0% |
| AATCCCGTAAAGTCCCTGTT+TGG | - | chr2_2:45341282-45341301 | Msa0253500:intron | 45.0% | |
| CTACCAAACAGGGACTTTAC+GGG | + | chr2_2:45341288-45341307 | None:intergenic | 45.0% | |
| CCCTGTTTGGTAGACATGAT+TGG | - | chr2_2:45341295-45341314 | Msa0253500:intron | 45.0% | |
| AACAAGAGGCTTCAGTTGTC+TGG | - | chr2_2:45341594-45341613 | Msa0253500:intron | 45.0% | |
| GCTTCAGTTGTCTGGTATAC+TGG | - | chr2_2:45341602-45341621 | Msa0253500:intron | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | - | chr2_2:45341787-45341806 | Msa0253500:CDS | 45.0% | |
| GCAATGCTTGTGCAGATTCT+TGG | - | chr2_2:45342326-45342345 | Msa0253500:intron | 45.0% | |
| TGCAGATTCTTGGAGCAGAA+CGG | - | chr2_2:45342336-45342355 | Msa0253500:intron | 45.0% | |
| GCAGAACGGTGTATTGAAGT+TGG | - | chr2_2:45342350-45342369 | Msa0253500:intron | 45.0% | |
| AATGCACCACATCAGTTGTG+CGG | - | chr2_2:45342808-45342827 | Msa0253500:intron | 45.0% | |
| ATAGATCCGCACAACTGATG+TGG | + | chr2_2:45342817-45342836 | None:intergenic | 45.0% | |
| GCATTAGTCCTTCCAGAATC+AGG | - | chr2_2:45342978-45342997 | Msa0253500:intron | 45.0% | |
| CTAAACGACCTGATTCTGGA+AGG | + | chr2_2:45342989-45343008 | None:intergenic | 45.0% | |
| GCAACTAAACGACCTGATTC+TGG | + | chr2_2:45342993-45343012 | None:intergenic | 45.0% | |
| AGGAATAGCAACAGCCTGTT+TGG | + | chr2_2:45343526-45343545 | None:intergenic | 45.0% | |
| CCCAACACTACAGTCTAATG+AGG | + | chr2_2:45343546-45343565 | None:intergenic | 45.0% | |
| ! | CATTAGACTGTAGTGTTGGG+AGG | - | chr2_2:45343546-45343565 | Msa0253500:intron | 45.0% |
| CAGCACTTCATTCAGTGAAC+TGG | + | chr2_2:45343846-45343865 | None:intergenic | 45.0% | |
| !! | ACTGAATGAAGTGCTGTTCC+AGG | - | chr2_2:45343850-45343869 | Msa0253500:intron | 45.0% |
| TAGAGTCACTTACCTGCACA+TGG | + | chr2_2:45344004-45344023 | None:intergenic | 45.0% | |
| ACACTTAGGGAGAGATTCTC+AGG | - | chr2_2:45344132-45344151 | Msa0253500:CDS | 45.0% | |
| GAGATGGGATGACAATCTGT+CGG | - | chr2_2:45344203-45344222 | Msa0253500:CDS | 45.0% | |
| TTCAGCCAAAGAGATTGGAC+TGG | + | chr2_2:45344365-45344384 | None:intergenic | 45.0% | |
| GCAAGTTCAGCCAAAGAGAT+TGG | + | chr2_2:45344370-45344389 | None:intergenic | 45.0% | |
| !! | GTTTTTCTAAGAGCCTAGCC+TGG | - | chr2_2:45344567-45344586 | Msa0253500:five_prime_UTR | 45.0% |
| CTGAATCTATTTCCCAGGCT+AGG | + | chr2_2:45344583-45344602 | None:intergenic | 45.0% | |
| !! | AATAATAAATATGTTATAAA+TGG | - | chr2_2:45341938-45341957 | Msa0253500:intron | 5.0% |
| !!! | TATATAAACTATTTTTATAT+TGG | - | chr2_2:45343148-45343167 | Msa0253500:intron | 5.0% |
| AGTGAGCTCACCCACTCTTT+AGG | - | chr2_2:45340324-45340343 | Msa0253500:three_prime_UTR | 50.0% | |
| CACTAGTGAGACCTTGTGCA+AGG | - | chr2_2:45340582-45340601 | Msa0253500:exon | 50.0% | |
| !! | AGGTTGTTAGTCTTACGCCC+CGG | - | chr2_2:45340747-45340766 | Msa0253500:CDS | 50.0% |
| !! | GATTCTAAGGCAGTTGCGAG+CGG | - | chr2_2:45340891-45340910 | Msa0253500:CDS | 50.0% |
| TATGCATGGAAGCCAGATGC+AGG | - | chr2_2:45340924-45340943 | Msa0253500:CDS | 50.0% | |
| TGATGGGAGATACCTGCATC+TGG | + | chr2_2:45340939-45340958 | None:intergenic | 50.0% | |
| TCCTGATCAGGCACAACTAC+TGG | - | chr2_2:45342304-45342323 | Msa0253500:intron | 50.0% | |
| ! | GCTTGCTGGCGTTTCACATA+AGG | - | chr2_2:45343061-45343080 | Msa0253500:intron | 50.0% |
| !! | ATGAAGTGCTGTTCCAGGTG+AGG | - | chr2_2:45343855-45343874 | Msa0253500:intron | 50.0% |
| TAAGACCTCCAATCCTCACC+TGG | + | chr2_2:45343871-45343890 | None:intergenic | 50.0% | |
| ! | CGGCAACTTTTCCATGCCAA+AGG | + | chr2_2:45343910-45343929 | None:intergenic | 50.0% |
| TGGAAAAGTTGCCGATCCGT+TGG | - | chr2_2:45343916-45343935 | Msa0253500:intron | 50.0% | |
| TCTTTGGCTGAACTTGCGGA+AGG | - | chr2_2:45344373-45344392 | Msa0253500:five_prime_UTR | 50.0% | |
| GCGGAGACTGCATCTATGCA+TGG | - | chr2_2:45340910-45340929 | Msa0253500:CDS | 55.0% | |
| GCCAGTAGTTGTGCCTGATC+AGG | + | chr2_2:45342308-45342327 | None:intergenic | 55.0% | |
| TCGCTAGTGATGAGTAGCCC+TGG | + | chr2_2:45342956-45342975 | None:intergenic | 55.0% | |
| ! | GTGCTGTTCCAGGTGAGGAT+TGG | - | chr2_2:45343860-45343879 | Msa0253500:intron | 55.0% |
| CTGTTCCAGGTGAGGATTGG+AGG | - | chr2_2:45343863-45343882 | Msa0253500:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 45340204 | 45344615 | 45340204 | ID=Msa0253500;Name=Msa0253500 |
| chr2_2 | mRNA | 45340204 | 45344615 | 45340204 | ID=Msa0253500-mRNA-1;Parent=Msa0253500;Name=Msa0253500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=296|1|1|1|1|1|9|381|298 |
| chr2_2 | exon | 45340204 | 45340626 | 45340204 | ID=Msa0253500-mRNA-1:exon:13965;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45340731 | 45340808 | 45340731 | ID=Msa0253500-mRNA-1:exon:13964;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45340882 | 45340947 | 45340882 | ID=Msa0253500-mRNA-1:exon:13963;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45341064 | 45341133 | 45341064 | ID=Msa0253500-mRNA-1:exon:13962;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45341535 | 45341602 | 45341535 | ID=Msa0253500-mRNA-1:exon:13961;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45341737 | 45341862 | 45341737 | ID=Msa0253500-mRNA-1:exon:13960;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45342437 | 45342520 | 45342437 | ID=Msa0253500-mRNA-1:exon:13959;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45343874 | 45343927 | 45343874 | ID=Msa0253500-mRNA-1:exon:13958;Parent=Msa0253500-mRNA-1 |
| chr2_2 | exon | 45344011 | 45344615 | 45344011 | ID=Msa0253500-mRNA-1:exon:13957;Parent=Msa0253500-mRNA-1 |
| chr2_2 | five_prime_UTR | 45344320 | 45344615 | 45344320 | ID=Msa0253500-mRNA-1:five_prime_utr;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45344011 | 45344319 | 45344011 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45343874 | 45343927 | 45343874 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45342437 | 45342520 | 45342437 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45341737 | 45341862 | 45341737 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45341535 | 45341602 | 45341535 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45341064 | 45341133 | 45341064 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45340882 | 45340947 | 45340882 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45340731 | 45340808 | 45340731 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | CDS | 45340585 | 45340626 | 45340585 | ID=Msa0253500-mRNA-1:cds;Parent=Msa0253500-mRNA-1 |
| chr2_2 | three_prime_UTR | 45340204 | 45340584 | 45340204 | ID=Msa0253500-mRNA-1:three_prime_utr;Parent=Msa0253500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
