AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025830 MtrunA17_Chr1g0180761 97.908 239 5 0 1 239 1 239 1.26e-176 484
Msa0025830 MtrunA17_Chr5g0415351 89.565 115 8 1 42 156 12 122 1.57e-67 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025830 AT5G52970.2 79.006 181 36 1 59 239 45 223 6.21e-104 300
Msa0025830 AT5G52970.1 79.006 181 36 1 59 239 45 223 6.21e-104 300

Find 63 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATGCAGAATTTA+AGG 0.135967 1_1:-49445494 Msa0025830:three_prime_UTR
CTCTCACTTTGTTTATTATT+TGG 0.163402 1_1:-49447572 Msa0025830:CDS
GTTTGGCTGTCAAAGATTTC+TGG 0.192590 1_1:-49446482 Msa0025830:CDS
TGGACATCCCACGTAGTTTC+TGG 0.229398 1_1:-49445993 Msa0025830:CDS
AACTCTTTAGGAAGCAATTC+TGG 0.245643 1_1:+49447419 None:intergenic
AGGATTTAAGTTGAGAGTTT+TGG 0.282622 1_1:-49446622 Msa0025830:CDS
ATAACAAACAAGTTCCAAAA+AGG 0.292532 1_1:-49447825 Msa0025830:five_prime_UTR
GATCATAAACCTGGAGTATC+AGG 0.309953 1_1:+49446588 None:intergenic
CTGGAGTATCAGGATAGTTC+TGG 0.327962 1_1:+49446598 None:intergenic
CTTAGTGTTTCCTTACTCAT+TGG 0.330550 1_1:-49445266 Msa0025830:three_prime_UTR
ATGACTGTACTAAACTCTTT+AGG 0.358717 1_1:+49447407 None:intergenic
AGTACAGTCATTGATGTTGC+TGG 0.367259 1_1:-49447395 Msa0025830:CDS
TGTTGGTGCTACCGTTGATT+TGG 0.370930 1_1:-49446013 Msa0025830:CDS
GAACTGAACATAACGTATAA+AGG 0.385383 1_1:-49445543 Msa0025830:three_prime_UTR
TATGTTAGTAATACATATTA+CGG 0.386381 1_1:-49445457 Msa0025830:three_prime_UTR
TCACTTTGTTTATTATTTGG+AGG 0.399730 1_1:-49447569 Msa0025830:intron
ATGAAATCTGCTGTTTAAAC+TGG 0.401151 1_1:-49445332 Msa0025830:three_prime_UTR
CTTAATACATCCAATGAGTA+AGG 0.405947 1_1:+49445256 None:intergenic
ATGTTAGTAATACATATTAC+GGG 0.406024 1_1:-49445456 Msa0025830:three_prime_UTR
ATCTATTGAGTCAGCAGTTA+TGG 0.410545 1_1:-49445624 Msa0025830:CDS
GCTGATCTTGAAAAGGATAC+AGG 0.427812 1_1:-49446642 Msa0025830:CDS
GTGATATATATACTTTCAAC+AGG 0.439643 1_1:+49445188 None:intergenic
AGTCGCTTGGCAGGCAAGTA+CGG 0.442941 1_1:-49445970 Msa0025830:CDS
GTTGCTTGAGAGAACCAGTT+GGG 0.457347 1_1:-49445592 Msa0025830:CDS
TTTGTTGCTGATCCCACGTT+TGG 0.459599 1_1:-49446435 Msa0025830:intron
GTCGCTTGGCAGGCAAGTAC+GGG 0.460149 1_1:-49445969 Msa0025830:CDS
GAACAATTATTAGCCCCAAC+TGG 0.470077 1_1:+49445578 None:intergenic
GAGTGAAGAAATGATAGAAT+TGG 0.472998 1_1:+49447640 None:intergenic
AATATATTGAATTTCAATGT+TGG 0.475240 1_1:-49446030 Msa0025830:CDS
CAGTGTATTCATCTTAAGCT+AGG 0.484777 1_1:-49445309 Msa0025830:three_prime_UTR
GAAGACGAGATGAGTGTTGT+GGG 0.493439 1_1:+49447729 None:intergenic
TGGAGTATCAGGATAGTTCT+GGG 0.496693 1_1:+49446599 None:intergenic
CATAGATTCTTTACCAAACG+TGG 0.506396 1_1:+49446422 None:intergenic
AGTTTCTGGAGTCGCTTGGC+AGG 0.507283 1_1:-49445979 Msa0025830:CDS
TGGATTCCTCTCCGATGGAC+AGG 0.514246 1_1:-49447375 Msa0025830:intron
AGAGATTGCTGATCTTGAAA+AGG 0.515456 1_1:-49446649 Msa0025830:CDS
GTTAGAGATATGAATGATGA+TGG 0.525806 1_1:+49447755 None:intergenic
TATTAAGTAAAACACAATGA+TGG 0.532171 1_1:-49445240 Msa0025830:three_prime_UTR
CCAGATAGAGCAAAATGTAA+AGG 0.537019 1_1:+49447599 None:intergenic
GCTGAGGCTGCTACTAAAGC+TGG 0.540195 1_1:-49447452 Msa0025830:CDS
ACGTAGTTTCTGGAGTCGCT+TGG 0.551070 1_1:-49445983 Msa0025830:CDS
AATTAAAATACATTGCATCA+TGG 0.559353 1_1:+49445432 None:intergenic
CAGAACTATCCTGATACTCC+AGG 0.561162 1_1:-49446597 Msa0025830:intron
GTTGCTGGATTCCTCTCCGA+TGG 0.564624 1_1:-49447380 Msa0025830:CDS
AGTGTATTCATCTTAAGCTA+GGG 0.582585 1_1:-49445308 Msa0025830:three_prime_UTR
TGAAGACGAGATGAGTGTTG+TGG 0.583044 1_1:+49447728 None:intergenic
TGTTGTTGTGTGATGAAGAG+AGG 0.593155 1_1:+49447672 None:intergenic
CAAATAATAAACAAAGTGAG+AGG 0.595591 1_1:+49447573 None:intergenic
GGATTCTAATACCTGTCCAT+CGG 0.616121 1_1:+49447364 None:intergenic
TTGTGAAGAAGATGATGAAG+AGG 0.620282 1_1:+49447779 None:intergenic
AAATAATAAACAAAGTGAGA+GGG 0.624981 1_1:+49447574 None:intergenic
CAATGAGTAAGGAAACACTA+AGG 0.629739 1_1:+49445267 None:intergenic
TGGGGCTAATAATTGTTCTG+AGG 0.629810 1_1:-49445573 Msa0025830:CDS
ATAGATTCTTTACCAAACGT+GGG 0.643008 1_1:+49446423 None:intergenic
TGAACATAACGTATAAAGGA+CGG 0.647930 1_1:-49445539 Msa0025830:three_prime_UTR
GGTAGGGGCTGAAATTGCTG+AGG 0.648153 1_1:-49447468 Msa0025830:intron
AGTTGCTTGAGAGAACCAGT+TGG 0.654577 1_1:-49445593 Msa0025830:CDS
ACGTGGGATGTCCAAATCAA+CGG 0.656283 1_1:+49446002 None:intergenic
TTGCTTGAGAGAACCAGTTG+GGG 0.659543 1_1:-49445591 Msa0025830:CDS
CTAATACCTGTCCATCGGAG+AGG 0.665653 1_1:+49447369 None:intergenic
AAGCGACTCCAGAAACTACG+TGG 0.682614 1_1:+49445985 None:intergenic
TGTTAGTAATACATATTACG+GGG 0.722111 1_1:-49445455 Msa0025830:three_prime_UTR
AGCGACTCCAGAAACTACGT+GGG 0.724493 1_1:+49445986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTGAATTTCAATGT+TGG - chr1_1:49446973-49446992 Msa0025830:intron 15.0%
!! ATTATATTATGCAGAATTTA+AGG - chr1_1:49447509-49447528 Msa0025830:intron 15.0%
!! TATGTTAGTAATACATATTA+CGG - chr1_1:49447546-49447565 Msa0025830:intron 15.0%
!! AAATAATAAACAAAGTGAGA+GGG + chr1_1:49445432-49445451 None:intergenic 20.0%
!! AATTAAGTTTGAATAATGAG+TGG + chr1_1:49445462-49445481 None:intergenic 20.0%
!!! ATATTGAAAATTCTGGAATT+TGG - chr1_1:49445514-49445533 Msa0025830:three_prime_UTR 20.0%
!!! TTTAAGTTATTTATCCAAAC+AGG + chr1_1:49445663-49445682 None:intergenic 20.0%
!! AATTTCATAAATGTTTATGC+TGG - chr1_1:49445849-49445868 Msa0025830:intron 20.0%
!! TAATAAAAACTATTATGCCA+CGG + chr1_1:49446145-49446164 None:intergenic 20.0%
!! TTAAATTGATCATTATGTTC+AGG - chr1_1:49446315-49446334 Msa0025830:intron 20.0%
!! ATAATGTACTATTATTATGC+AGG - chr1_1:49446499-49446518 Msa0025830:intron 20.0%
!! CATACAAAAAACAATATCAA+TGG - chr1_1:49447139-49447158 Msa0025830:intron 20.0%
!!! TAATGTGTCTATTCTTTTAT+TGG - chr1_1:49447292-49447311 Msa0025830:intron 20.0%
!! TAATCATAATGATCTGATAA+TGG - chr1_1:49447325-49447344 Msa0025830:intron 20.0%
!! ATGTTAGTAATACATATTAC+GGG - chr1_1:49447547-49447566 Msa0025830:intron 20.0%
!! AATTAAAATACATTGCATCA+TGG + chr1_1:49447574-49447593 None:intergenic 20.0%
!! TATTAAGTAAAACACAATGA+TGG - chr1_1:49447763-49447782 Msa0025830:CDS 20.0%
! CAAATAATAAACAAAGTGAG+AGG + chr1_1:49445433-49445452 None:intergenic 25.0%
!! CTCTCACTTTGTTTATTATT+TGG - chr1_1:49445431-49445450 Msa0025830:three_prime_UTR 25.0%
!! TCACTTTGTTTATTATTTGG+AGG - chr1_1:49445434-49445453 Msa0025830:three_prime_UTR 25.0%
! CTGCAAAATATTGAAAATTC+TGG - chr1_1:49445507-49445526 Msa0025830:three_prime_UTR 25.0%
!! CGACAGAAATATAAAGATTT+TGG + chr1_1:49446013-49446032 None:intergenic 25.0%
!! TTTATATTTCTGTCGCATTT+GGG - chr1_1:49446018-49446037 Msa0025830:CDS 25.0%
! AATAAAAACTATTATGCCAC+GGG + chr1_1:49446144-49446163 None:intergenic 25.0%
! TTAAAGCTAAAAACCTTGTT+TGG + chr1_1:49446721-49446740 None:intergenic 25.0%
! TTGAAATTCAATATATTGCC+TGG + chr1_1:49446970-49446989 None:intergenic 25.0%
! TGTTAGTAATACATATTACG+GGG - chr1_1:49447548-49447567 Msa0025830:intron 25.0%
! GTGATATATATACTTTCAAC+AGG + chr1_1:49447818-49447837 None:intergenic 25.0%
GTTAGAGATATGAATGATGA+TGG + chr1_1:49445251-49445270 None:intergenic 30.0%
GAGTGAAGAAATGATAGAAT+TGG + chr1_1:49445366-49445385 None:intergenic 30.0%
!!! TAAAGGTTTTGAGTGAATGT+TGG + chr1_1:49445390-49445409 None:intergenic 30.0%
!! TGAAAATTCTGGAATTTGGT+AGG - chr1_1:49445518-49445537 Msa0025830:three_prime_UTR 30.0%
!! GAAAATTCTGGAATTTGGTA+GGG - chr1_1:49445519-49445538 Msa0025830:three_prime_UTR 30.0%
!! AAAATTCTGGAATTTGGTAG+GGG - chr1_1:49445520-49445539 Msa0025830:three_prime_UTR 30.0%
ATGACTGTACTAAACTCTTT+AGG + chr1_1:49445599-49445618 None:intergenic 30.0%
! AAACTGTTTTCATAAGCTAC+CGG - chr1_1:49445753-49445772 Msa0025830:intron 30.0%
GTACTACATAAGCTCTATTT+GGG + chr1_1:49445897-49445916 None:intergenic 30.0%
TGTACTACATAAGCTCTATT+TGG + chr1_1:49445898-49445917 None:intergenic 30.0%
ATACAATATCAAGATCACTG+CGG + chr1_1:49445977-49445996 None:intergenic 30.0%
! CTTTATATTTCTGTCGCATT+TGG - chr1_1:49446017-49446036 Msa0025830:CDS 30.0%
TTTGATATTACAGAGAATCG+CGG + chr1_1:49446210-49446229 None:intergenic 30.0%
!!! AGGATTTAAGTTGAGAGTTT+TGG - chr1_1:49446381-49446400 Msa0025830:intron 30.0%
AGGATATTCGCACAATTTAA+GGG - chr1_1:49446438-49446457 Msa0025830:CDS 30.0%
GTACTATTATTATGCAGGTT+TGG - chr1_1:49446504-49446523 Msa0025830:intron 30.0%
ATAGATTCTTTACCAAACGT+GGG + chr1_1:49446583-49446602 None:intergenic 30.0%
TACCGATATAGGTAACATTA+AGG - chr1_1:49446928-49446947 Msa0025830:intron 30.0%
CTCCTTAATGTTACCTATAT+CGG + chr1_1:49446933-49446952 None:intergenic 30.0%
!!! AAGGTAAGCTCTACTTTTTT+GGG - chr1_1:49447078-49447097 Msa0025830:intron 30.0%
!! AAATAAGTTGCTAGCTTTAG+AGG + chr1_1:49447114-49447133 None:intergenic 30.0%
GAATAGACACATTAAAATGC+AGG + chr1_1:49447286-49447305 None:intergenic 30.0%
GTTTAATACCAAACGAAACA+GGG - chr1_1:49447347-49447366 Msa0025830:intron 30.0%
GAACTGAACATAACGTATAA+AGG - chr1_1:49447460-49447479 Msa0025830:CDS 30.0%
TGAACATAACGTATAAAGGA+CGG - chr1_1:49447464-49447483 Msa0025830:CDS 30.0%
! ATGAAATCTGCTGTTTAAAC+TGG - chr1_1:49447671-49447690 Msa0025830:CDS 30.0%
AGTGTATTCATCTTAAGCTA+GGG - chr1_1:49447695-49447714 Msa0025830:CDS 30.0%
CTTAATACATCCAATGAGTA+AGG + chr1_1:49447750-49447769 None:intergenic 30.0%
GTTATAGACAAAAAGTCAGT+AGG + chr1_1:49447796-49447815 None:intergenic 30.0%
AAACAAGTTCCAAAAAGGGA+AGG - chr1_1:49445183-49445202 Msa0025830:three_prime_UTR 35.0%
TTGTGAAGAAGATGATGAAG+AGG + chr1_1:49445227-49445246 None:intergenic 35.0%
CCAGATAGAGCAAAATGTAA+AGG + chr1_1:49445407-49445426 None:intergenic 35.0%
! CCTTTACATTTTGCTCTATC+TGG - chr1_1:49445404-49445423 Msa0025830:three_prime_UTR 35.0%
! AACTCTTTAGGAAGCAATTC+TGG + chr1_1:49445587-49445606 None:intergenic 35.0%
ACAGGTATTAGAATCCTGTT+TGG - chr1_1:49445646-49445665 Msa0025830:intron 35.0%
! AACTGTTTTCATAAGCTACC+GGG - chr1_1:49445754-49445773 Msa0025830:intron 35.0%
TACATAAGCTCTATTTGGGT+TGG + chr1_1:49445893-49445912 None:intergenic 35.0%
ATGTTCAAACACTTAGTGAC+AGG - chr1_1:49445929-49445948 Msa0025830:intron 35.0%
TGTAATATCAAAGATCGCGA+CGG - chr1_1:49446218-49446237 Msa0025830:intron 35.0%
AACATTCGAAGGAATGATTC+TGG + chr1_1:49446246-49446265 None:intergenic 35.0%
!! AAGAGTATCAATCATCAGCA+GGG + chr1_1:49446277-49446296 None:intergenic 35.0%
AGAGATTGCTGATCTTGAAA+AGG - chr1_1:49446354-49446373 Msa0025830:intron 35.0%
GAATATCCTGATCATAAACC+TGG + chr1_1:49446427-49446446 None:intergenic 35.0%
CAGGATATTCGCACAATTTA+AGG - chr1_1:49446437-49446456 Msa0025830:CDS 35.0%
! ACAATTTAAGGGTTGAGTTG+AGG - chr1_1:49446449-49446468 Msa0025830:CDS 35.0%
CATAGATTCTTTACCAAACG+TGG + chr1_1:49446584-49446603 None:intergenic 35.0%
! AAGCTAAAAACCTTGTTTGG+AGG + chr1_1:49446718-49446737 None:intergenic 35.0%
GAAGAACAACAGTAACAGAA+AGG + chr1_1:49446871-49446890 None:intergenic 35.0%
TAGATCCATCAAGAAGAAAG+AGG + chr1_1:49446910-49446929 None:intergenic 35.0%
!!! GGAGTTTTTTTTTGTTGACC+AGG - chr1_1:49446949-49446968 Msa0025830:intron 35.0%
! AGTACGGGAACATTTTCTAT+TGG - chr1_1:49447049-49447068 Msa0025830:intron 35.0%
!!! GAAGGTAAGCTCTACTTTTT+TGG - chr1_1:49447077-49447096 Msa0025830:intron 35.0%
TGCTCATGCATATCAAATCA+TGG - chr1_1:49447192-49447211 Msa0025830:intron 35.0%
GGTTTAATACCAAACGAAAC+AGG - chr1_1:49447346-49447365 Msa0025830:intron 35.0%
ATCTATTGAGTCAGCAGTTA+TGG - chr1_1:49447379-49447398 Msa0025830:CDS 35.0%
CAGTGTATTCATCTTAAGCT+AGG - chr1_1:49447694-49447713 Msa0025830:CDS 35.0%
CAATGAGTAAGGAAACACTA+AGG + chr1_1:49447739-49447758 None:intergenic 35.0%
CTTAGTGTTTCCTTACTCAT+TGG - chr1_1:49447737-49447756 Msa0025830:CDS 35.0%
! CATCATTGTCCTTCCCTTTT+TGG + chr1_1:49445195-49445214 None:intergenic 40.0%
CAAAAAGGGAAGGACAATGA+TGG - chr1_1:49445193-49445212 Msa0025830:three_prime_UTR 40.0%
TGTTGTTGTGTGATGAAGAG+AGG + chr1_1:49445334-49445353 None:intergenic 40.0%
AGTACAGTCATTGATGTTGC+TGG - chr1_1:49445608-49445627 Msa0025830:CDS 40.0%
GGATTCTAATACCTGTCCAT+CGG + chr1_1:49445642-49445661 None:intergenic 40.0%
CTTATTTCCATAAGCTCTCC+CGG + chr1_1:49445775-49445794 None:intergenic 40.0%
TGCTTCTGTTTCATCGTGTA+TGG - chr1_1:49446064-49446083 Msa0025830:intron 40.0%
GGGTTTCAAACAACATTCGA+AGG + chr1_1:49446257-49446276 None:intergenic 40.0%
!! CAAGAGTATCAATCATCAGC+AGG + chr1_1:49446278-49446297 None:intergenic 40.0%
GCTGATCTTGAAAAGGATAC+AGG - chr1_1:49446361-49446380 Msa0025830:intron 40.0%
! TGGAGTATCAGGATAGTTCT+GGG + chr1_1:49446407-49446426 None:intergenic 40.0%
! GATCATAAACCTGGAGTATC+AGG + chr1_1:49446418-49446437 None:intergenic 40.0%
GATACTCCAGGTTTATGATC+AGG - chr1_1:49446418-49446437 Msa0025830:intron 40.0%
GTTTGGCTGTCAAAGATTTC+TGG - chr1_1:49446521-49446540 Msa0025830:intron 40.0%
! AGAGTTTTTGCCTCCAAACA+AGG - chr1_1:49446705-49446724 Msa0025830:intron 40.0%
ACAACAGTAACAGAAAGGTG+TGG + chr1_1:49446866-49446885 None:intergenic 40.0%
AAGAGGCGGAAATAACTTAG+AGG + chr1_1:49446893-49446912 None:intergenic 40.0%
ATCCATCAAGAAGAAAGAGG+CGG + chr1_1:49446907-49446926 None:intergenic 40.0%
! CTTGATGGATCTACCGATAT+AGG - chr1_1:49446917-49446936 Msa0025830:intron 40.0%
! ACGGGAACATTTTCTATTGG+AGG - chr1_1:49447052-49447071 Msa0025830:intron 40.0%
! CGGGAACATTTTCTATTGGA+GGG - chr1_1:49447053-49447072 Msa0025830:intron 40.0%
! CATTTTCTATTGGAGGGAGA+AGG - chr1_1:49447059-49447078 Msa0025830:intron 40.0%
GAACAATTATTAGCCCCAAC+TGG + chr1_1:49447428-49447447 None:intergenic 40.0%
TGGGGCTAATAATTGTTCTG+AGG - chr1_1:49447430-49447449 Msa0025830:CDS 40.0%
! GAAGACGAGATGAGTGTTGT+GGG + chr1_1:49445277-49445296 None:intergenic 45.0%
! TGAAGACGAGATGAGTGTTG+TGG + chr1_1:49445278-49445297 None:intergenic 45.0%
GTGCAATGTGACTTCGATTG+AGG - chr1_1:49446174-49446193 Msa0025830:intron 45.0%
CAGAGAATCGCGGTCAAATA+CGG + chr1_1:49446200-49446219 None:intergenic 45.0%
! CTGGAGTATCAGGATAGTTC+TGG + chr1_1:49446408-49446427 None:intergenic 45.0%
CAGAACTATCCTGATACTCC+AGG - chr1_1:49446406-49446425 Msa0025830:intron 45.0%
TTTGTTGCTGATCCCACGTT+TGG - chr1_1:49446568-49446587 Msa0025830:intron 45.0%
TTCCGCCTCTTTCTTCTTGA+TGG - chr1_1:49446902-49446921 Msa0025830:intron 45.0%
!! TGTTGGTGCTACCGTTGATT+TGG - chr1_1:49446990-49447009 Msa0025830:intron 45.0%
ACGTGGGATGTCCAAATCAA+CGG + chr1_1:49447004-49447023 None:intergenic 45.0%
ACTCTACTCACTTCAGACGA+AGG - chr1_1:49447252-49447271 Msa0025830:intron 45.0%
CATCTTCACCCTGTTTCGTT+TGG + chr1_1:49447358-49447377 None:intergenic 45.0%
AGTTGCTTGAGAGAACCAGT+TGG - chr1_1:49447410-49447429 Msa0025830:CDS 45.0%
GTTGCTTGAGAGAACCAGTT+GGG - chr1_1:49447411-49447430 Msa0025830:CDS 45.0%
TTGCTTGAGAGAACCAGTTG+GGG - chr1_1:49447412-49447431 Msa0025830:CDS 45.0%
! AGGTGACACGACAGCGTTTT+TGG + chr1_1:49445314-49445333 None:intergenic 50.0%
CTAATACCTGTCCATCGGAG+AGG + chr1_1:49445637-49445656 None:intergenic 50.0%
TAAGCTACCGGGAGAGCTTA+TGG - chr1_1:49445765-49445784 Msa0025830:intron 50.0%
GATGACAGAAATCTGACCCG+TGG - chr1_1:49446125-49446144 Msa0025830:intron 50.0%
TGGACATCCCACGTAGTTTC+TGG - chr1_1:49447010-49447029 Msa0025830:intron 50.0%
AGCGACTCCAGAAACTACGT+GGG + chr1_1:49447020-49447039 None:intergenic 50.0%
AAGCGACTCCAGAAACTACG+TGG + chr1_1:49447021-49447040 None:intergenic 50.0%
!! ACGTAGTTTCTGGAGTCGCT+TGG - chr1_1:49447020-49447039 Msa0025830:intron 50.0%
GGTAGGGGCTGAAATTGCTG+AGG - chr1_1:49445535-49445554 Msa0025830:three_prime_UTR 55.0%
GCTGAGGCTGCTACTAAAGC+TGG - chr1_1:49445551-49445570 Msa0025830:exon 55.0%
GTTGCTGGATTCCTCTCCGA+TGG - chr1_1:49445623-49445642 Msa0025830:CDS 55.0%
TGGATTCCTCTCCGATGGAC+AGG - chr1_1:49445628-49445647 Msa0025830:CDS 55.0%
!! AGTTTCTGGAGTCGCTTGGC+AGG - chr1_1:49447024-49447043 Msa0025830:intron 55.0%
AGTCGCTTGGCAGGCAAGTA+CGG - chr1_1:49447033-49447052 Msa0025830:intron 55.0%
GTCGCTTGGCAGGCAAGTAC+GGG - chr1_1:49447034-49447053 Msa0025830:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49445180 49447845 49445180 ID=Msa0025830;Name=Msa0025830
chr1_1 mRNA 49445180 49447845 49445180 ID=Msa0025830-mRNA-1;Parent=Msa0025830;Name=Msa0025830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=29|1|1|1|1|1|6|385|239
chr1_1 exon 49445180 49445657 49445180 ID=Msa0025830-mRNA-1:exon:14242;Parent=Msa0025830-mRNA-1
chr1_1 exon 49445945 49446054 49445945 ID=Msa0025830-mRNA-1:exon:14241;Parent=Msa0025830-mRNA-1
chr1_1 exon 49446436 49446504 49446436 ID=Msa0025830-mRNA-1:exon:14240;Parent=Msa0025830-mRNA-1
chr1_1 exon 49446598 49446688 49446598 ID=Msa0025830-mRNA-1:exon:14239;Parent=Msa0025830-mRNA-1
chr1_1 exon 49447376 49447485 49447376 ID=Msa0025830-mRNA-1:exon:14238;Parent=Msa0025830-mRNA-1
chr1_1 exon 49447570 49447845 49447570 ID=Msa0025830-mRNA-1:exon:14237;Parent=Msa0025830-mRNA-1
chr1_1 five_prime_UTR 49447817 49447845 49447817 ID=Msa0025830-mRNA-1:five_prime_utr;Parent=Msa0025830-mRNA-1
chr1_1 CDS 49447570 49447816 49447570 ID=Msa0025830-mRNA-1:cds;Parent=Msa0025830-mRNA-1
chr1_1 CDS 49447376 49447485 49447376 ID=Msa0025830-mRNA-1:cds;Parent=Msa0025830-mRNA-1
chr1_1 CDS 49446598 49446688 49446598 ID=Msa0025830-mRNA-1:cds;Parent=Msa0025830-mRNA-1
chr1_1 CDS 49446436 49446504 49446436 ID=Msa0025830-mRNA-1:cds;Parent=Msa0025830-mRNA-1
chr1_1 CDS 49445945 49446054 49445945 ID=Msa0025830-mRNA-1:cds;Parent=Msa0025830-mRNA-1
chr1_1 CDS 49445565 49445657 49445565 ID=Msa0025830-mRNA-1:cds;Parent=Msa0025830-mRNA-1
chr1_1 three_prime_UTR 49445180 49445564 49445180 ID=Msa0025830-mRNA-1:three_prime_utr;Parent=Msa0025830-mRNA-1
Gene Sequence

>Msa0025830

ATGATGGCACATTATCCTCTTCATCATCTTCTTCACAATCCATCATCATTCATATCTCTAACATTCCCACAACACTCATCTCGTCTTCAAACATTATCACTGCCAAAAACGCTGTCGTGTCACCTCTCTTCATCACACAACAACAAATGTAGTTCCAATTCTATCATTTCTTCACTCACCAACATTCACTCAAAACCTTTACATTTTGCTCTATCTGGAGCCCTCTCACTTTGTTTATTATTTGGAGGGGCTGAAATTGCTGAGGCTGCTACTAAAGCTGGTGTCAATAAGCCAGAATTGCTTCCTAAAGAGTTTAGTACAGTCATTGATGTTGCTGGATTCCTCTCCGATGGACAGGAGAAAAGACTAGCACAAGAGATTGCTGATCTTGAAAAGGATACAGGATTTAAGTTGAGAGTTTTGGCCCAGAACTATCCTGATACTCCAGGTTTGGCTGTCAAAGATTTCTGGCAAGTAGATGACAGTACAGTTGTCTTTGTTGCTGATCCCACGTTTGGCAATATATTGAATTTCAATGTTGGTGCTACCGTTGATTTGGACATCCCACGTAGTTTCTGGAGTCGCTTGGCAGGCAAGTACGGGAACATTTTCTATTGGAGGGAGAAGGGTGAAGATGCATCTATTGAGTCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGGCTAATAATTGTTCTGAGGTGAAATAG

Protein sequence

>Msa0025830

MMAHYPLHHLLHNPSSFISLTFPQHSSRLQTLSLPKTLSCHLSSSHNNKCSSNSIISSLTNIHSKPLHFALSGALSLCLLFGGAEIAEAATKAGVNKPELLPKEFSTVIDVAGFLSDGQEKRLAQEIADLEKDTGFKLRVLAQNYPDTPGLAVKDFWQVDDSTVVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIFYWREKGEDASIESAVMAISSCLREPVGANNCSEVK*