AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1396310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1396310 MtrunA17_Chr7g0269121 96.256 454 9 2 1 454 1 446 0.0 878
Msa1396310 MtrunA17_Chr1g0182941 32.714 269 154 4 184 452 84 325 3.40e-37 139
Msa1396310 MtrunA17_Chr8g0380461 40.698 86 51 0 76 161 224 309 5.94e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1396310 AT1G02910.1 78.517 391 77 1 64 454 70 453 0.0 620
Msa1396310 AT1G02910.2 78.405 301 58 1 64 364 70 363 1.09e-165 471
Msa1396310 AT4G28740.1 29.553 291 159 6 171 452 86 339 4.05e-32 125

Find 111 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTTTGAGTTTCAGTTTC+TGG 0.084218 tig0022022:+18248 None:intergenic
CTGCTATTCTTCCTAAAATT+TGG 0.154595 tig0022022:-14721 Msa1396310:three_prime_UTR
TGCTGAATCTTGTGTCAATT+TGG 0.170482 tig0022022:-18228 Msa1396310:CDS
AGGGAATACAATCTAAAATT+TGG 0.180286 tig0022022:-17200 Msa1396310:CDS
GCCGAGGCTCTTCCATCTAT+TGG 0.209787 tig0022022:-16225 Msa1396310:CDS
TCTTGATAGCGTCTCATTTC+GGG 0.223202 tig0022022:+16579 None:intergenic
TCTTGCAGTTCTTTGAATTC+AGG 0.252697 tig0022022:+17134 None:intergenic
TACATAATACTGCGCCTAGA+TGG 0.254686 tig0022022:-15590 Msa1396310:CDS
CCGAGGCTCTTCCATCTATT+GGG 0.259951 tig0022022:-16224 Msa1396310:CDS
CTACTGTTATAGCTTAAATT+AGG 0.261959 tig0022022:-14535 Msa1396310:three_prime_UTR
CCAGCAGTTTCCAAGATATC+TGG 0.281755 tig0022022:+16806 None:intergenic
ATCTTGATAGCGTCTCATTT+CGG 0.299241 tig0022022:+16578 None:intergenic
GCCACGTTACCAGGCGAGGC+TGG 0.302436 tig0022022:-17005 Msa1396310:intron
AAAATTGAAAAGAAAGGTTT+TGG 0.310155 tig0022022:-16264 Msa1396310:CDS
ACCTATACTCTATATACATT+GGG 0.315583 tig0022022:+14489 None:intergenic
GCGGAAGCTCCTTTGCAATT+TGG 0.322167 tig0022022:+14797 None:intergenic
AAGCACCATTTCGTGGGATT+AGG 0.348978 tig0022022:-16925 Msa1396310:CDS
AATAAATTATACCCTTCCTT+TGG 0.358541 tig0022022:+18190 None:intergenic
GGCTGTCTCGCCAGCAGAAT+GGG 0.369774 tig0022022:-16036 Msa1396310:CDS
CTAACAAAACACCACGTCTA+AGG 0.371298 tig0022022:+16319 None:intergenic
TCCTCAGGTTAAAGATGCTT+TGG 0.371395 tig0022022:-18088 Msa1396310:intron
CAAAATTGAAAGCTGAAGTT+AGG 0.374638 tig0022022:-16070 Msa1396310:CDS
GCTCTGAAGGAGGCCAAGTC+TGG 0.375383 tig0022022:+17161 None:intergenic
GCTGAATCTTGTGTCAATTT+GGG 0.378047 tig0022022:-18227 Msa1396310:CDS
AAGAAAGCGCTGTTTCAAAC+TGG 0.378599 tig0022022:+18064 None:intergenic
ATGTACACGTCTTCACCAAC+TGG 0.388064 tig0022022:+15608 None:intergenic
TTGTCTCCGCACTGCTTTGA+GGG 0.391438 tig0022022:-17219 Msa1396310:CDS
GATGGGCGAGTTCGAAGATC+AGG 0.392817 tig0022022:-15572 Msa1396310:CDS
CCTCGGCAGCCTTTGGTTGA+AGG 0.396160 tig0022022:+16241 None:intergenic
GGAAGAGCCTCGGCAGCCTT+TGG 0.402943 tig0022022:+16234 None:intergenic
TCAAGTCTCACCCCAATAGA+TGG 0.404757 tig0022022:+16213 None:intergenic
ATTGTCTCCGCACTGCTTTG+AGG 0.415367 tig0022022:-17220 Msa1396310:CDS
CTTAAAATTGCTTCCATTGG+CGG 0.415831 tig0022022:+14778 None:intergenic
AGGATATTGCGTGCAATTCA+AGG 0.419559 tig0022022:-16842 Msa1396310:CDS
GAAAGCTGAAGTTAGGTTCA+AGG 0.431841 tig0022022:-16063 Msa1396310:CDS
CCCCAATGTATATAGAGTAT+AGG 0.434099 tig0022022:-14490 Msa1396310:three_prime_UTR
GAAACCAAAATTGAAAAGAA+AGG 0.434754 tig0022022:-16270 Msa1396310:CDS
AACGCAGCTTGTGCCTCAAC+AGG 0.436965 tig0022022:+18030 None:intergenic
TGACGGTGCTCCAGATATCT+TGG 0.438383 tig0022022:-16816 Msa1396310:CDS
TTTGCAATTTGGTCCCAGTC+AGG 0.440992 tig0022022:+14808 None:intergenic
GCTTGTGCCTCAACAGGATT+CGG 0.441012 tig0022022:+18036 None:intergenic
TTGCTTAAAATTGCTTCCAT+TGG 0.443356 tig0022022:+14775 None:intergenic
TGCAGCTAAGGGACACAGTT+AGG 0.446803 tig0022022:-16516 Msa1396310:CDS
TTACCAGGCGAGGCTGGGTG+GGG 0.451574 tig0022022:-16999 Msa1396310:intron
TTTGTTAGTTCCGGTCATCT+GGG 0.453240 tig0022022:-16304 Msa1396310:CDS
CTATTCTTCCTAAAATTTGG+AGG 0.460946 tig0022022:-14718 Msa1396310:three_prime_UTR
CGTTACCAGGCGAGGCTGGG+TGG 0.461787 tig0022022:-17001 Msa1396310:intron
GTTACCAGGCGAGGCTGGGT+GGG 0.469758 tig0022022:-17000 Msa1396310:intron
AACCTATACTCTATATACAT+TGG 0.475314 tig0022022:+14488 None:intergenic
AAGCTTGCTGTCATGCATAC+AGG 0.484380 tig0022022:-17999 Msa1396310:intron
CCACGTTACCAGGCGAGGCT+GGG 0.484480 tig0022022:-17004 Msa1396310:intron
TAGTTGAACTTGTGCAGCTA+AGG 0.486476 tig0022022:-16528 Msa1396310:CDS
GAATTCAGGCAAAGCTCTGA+AGG 0.486878 tig0022022:+17148 None:intergenic
AGGCTGTCTCGCCAGCAGAA+TGG 0.494664 tig0022022:-16037 Msa1396310:CDS
AATCTCCTAATCCCACGAAA+TGG 0.503609 tig0022022:+16920 None:intergenic
CAACTACGCGATTAGTTGAC+AGG 0.506671 tig0022022:+16545 None:intergenic
AGCTTAAATTAGGAATCTGC+AGG 0.509347 tig0022022:-14525 Msa1396310:three_prime_UTR
CAAAGCAGTGCGGAGACAAT+CGG 0.512104 tig0022022:+17223 None:intergenic
CCAGATATCTTGGAAACTGC+TGG 0.515028 tig0022022:-16806 Msa1396310:CDS
CCTTCAACCAAAGGCTGCCG+AGG 0.516966 tig0022022:-16241 Msa1396310:CDS
GAAGAAATATTACTTTAAGT+CGG 0.517966 tig0022022:-14562 Msa1396310:three_prime_UTR
TGCAAAGGAGCTTCCGCCAA+TGG 0.521860 tig0022022:-14791 Msa1396310:CDS
ACATAATACTGCGCCTAGAT+GGG 0.527292 tig0022022:-15589 Msa1396310:CDS
TATTCTTCCTAAAATTTGGA+GGG 0.529899 tig0022022:-14717 Msa1396310:three_prime_UTR
GATATGAAACATGGTGGCAA+TGG 0.531708 tig0022022:-18441 Msa1396310:exon
AGGCTGGGTGGGGAAGATGT+TGG 0.531748 tig0022022:-16989 Msa1396310:CDS
GAAGTTCAAGCACCATTTCG+TGG 0.532993 tig0022022:-16932 Msa1396310:CDS
ATCTTCGAACTCGCCCATCT+AGG 0.534361 tig0022022:+15576 None:intergenic
GTAGCATTTACAGCAGCTGC+AGG 0.534556 tig0022022:-16890 Msa1396310:CDS
ATTGTCTATAGTAGTGATAG+TGG 0.541896 tig0022022:+14620 None:intergenic
GGATATTGCGTGCAATTCAA+GGG 0.542599 tig0022022:-16841 Msa1396310:CDS
ATTTGCAGGGTATACCTGAC+TGG 0.543556 tig0022022:-14822 Msa1396310:intron
ATTGAGCTGAAATGATGAAG+AGG 0.545421 tig0022022:+18344 None:intergenic
CTACCTTCTCCCCAGATGAC+CGG 0.547128 tig0022022:+16294 None:intergenic
AAGTACCGTTCCCATTCTGC+TGG 0.548151 tig0022022:+16026 None:intergenic
GAATTGTTGCGCTGCAACCA+TGG 0.548296 tig0022022:+18418 None:intergenic
GTTCCGGTCATCTGGGGAGA+AGG 0.549388 tig0022022:-16297 Msa1396310:CDS
TGAAGTTAGGTTCAAGGCTG+AGG 0.551548 tig0022022:-16057 Msa1396310:CDS
GGCAATGCTGCCGTTAACAT+TGG 0.552835 tig0022022:-16785 Msa1396310:CDS
CCCAATAGATGGAAGAGCCT+CGG 0.555211 tig0022022:+16224 None:intergenic
GAAGAAGAGCATGAAATGAG+TGG 0.556068 tig0022022:+18284 None:intergenic
AGAGATCAACAGAAGTCTGA+AGG 0.565443 tig0022022:-15635 Msa1396310:CDS
CGCACTGATCTCCTTAGACG+TGG 0.568893 tig0022022:-16330 Msa1396310:CDS
GCTAAGGGACACAGTTAGGC+CGG 0.575266 tig0022022:-16512 Msa1396310:intron
AAGTTCAAGCACCATTTCGT+GGG 0.578443 tig0022022:-16931 Msa1396310:CDS
TTTGAATCCGAATCCTGTTG+AGG 0.588831 tig0022022:-18043 Msa1396310:CDS
TGAATTGCACGCAATATCCT+CGG 0.591333 tig0022022:+16845 None:intergenic
CGATTAGTTGACAGGCGCAA+AGG 0.594654 tig0022022:+16553 None:intergenic
TCTCGCCAGCAGAATGGGAA+CGG 0.600206 tig0022022:-16031 Msa1396310:intron
ATTCAAAGAACTGCAAGAAG+AGG 0.601602 tig0022022:-17129 Msa1396310:intron
CGAGGCTCTTCCATCTATTG+GGG 0.602519 tig0022022:-16223 Msa1396310:intron
AGTTGAACTTGTGCAGCTAA+GGG 0.603912 tig0022022:-16527 Msa1396310:CDS
TTGTTAGTTCCGGTCATCTG+GGG 0.606306 tig0022022:-16303 Msa1396310:CDS
AATTCTCAATGATCCAGACT+TGG 0.609578 tig0022022:-17174 Msa1396310:CDS
AAACATGGTGGCAATGGCCA+TGG 0.612945 tig0022022:-18435 Msa1396310:exon
ATGGGCGAGTTCGAAGATCA+GGG 0.615817 tig0022022:-15571 Msa1396310:CDS
CAAAACAAAGATATGAAACA+TGG 0.620559 tig0022022:-18450 Msa1396310:exon
GTCTATAGTAGTGATAGTGG+AGG 0.631418 tig0022022:+14623 None:intergenic
TTTGCAGGGTATACCTGACT+GGG 0.637662 tig0022022:-14821 Msa1396310:intron
GATATTGCGTGCAATTCAAG+GGG 0.641353 tig0022022:-16840 Msa1396310:CDS
AATGCTGCCGTTAACATTGG+AGG 0.642188 tig0022022:-16782 Msa1396310:CDS
CCTATACTCTATATACATTG+GGG 0.643524 tig0022022:+14490 None:intergenic
TTCAGGCAAAGCTCTGAAGG+AGG 0.648459 tig0022022:+17151 None:intergenic
AAATGATGAAGAGGAATGCA+TGG 0.649647 tig0022022:+18353 None:intergenic
TGTACACGTCTTCACCAACT+GGG 0.656974 tig0022022:+15609 None:intergenic
TGACTGGGACCAAATTGCAA+AGG 0.667942 tig0022022:-14806 Msa1396310:CDS
AGTGACTTTAGCTTTGCGCA+AGG 0.669503 tig0022022:-16364 Msa1396310:CDS
AAGTCTGAAGGAGTCCCAGT+TGG 0.669604 tig0022022:-15623 Msa1396310:CDS
AACAAAGATATGAAACATGG+TGG 0.687256 tig0022022:-18447 Msa1396310:exon
TGTATTCCCTCAAAGCAGTG+CGG 0.746167 tig0022022:+17213 None:intergenic
ATATTGCGTGCAATTCAAGG+GGG 0.811226 tig0022022:-16839 Msa1396310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAATAGATTAAAGATT+AGG + tig0022022:16861-16880 None:intergenic 10.0%
!! TTATTATTGAGATTAATTAA+AGG - tig0022022:16875-16894 Msa1396310:CDS 10.0%
!!! TTACAATTAATAAGTTTTAA+TGG - tig0022022:18245-18264 Msa1396310:CDS 10.0%
!!! AAAATGTTTTGATAAACTTA+TGG + tig0022022:15206-15225 None:intergenic 15.0%
!!! TCAAATTAATTTTACATCTT+AGG - tig0022022:17527-17546 Msa1396310:intron 15.0%
!!! TTTTTTGCAATGAATTAATG+TGG - tig0022022:14877-14896 Msa1396310:intron 20.0%
!! TAATTAACCATCTTAAACTA+TGG + tig0022022:14906-14925 None:intergenic 20.0%
!! CAATAAATTTATAAAACCAG+TGG + tig0022022:14938-14957 None:intergenic 20.0%
!! AATAATAATTACCAACTCAA+AGG + tig0022022:14993-15012 None:intergenic 20.0%
!! TCAAATAAGTGAATAAAAAC+GGG + tig0022022:15082-15101 None:intergenic 20.0%
!! GTCAAATAAGTGAATAAAAA+CGG + tig0022022:15083-15102 None:intergenic 20.0%
!!! AACATTTTGAAAACAACTTA+TGG + tig0022022:15182-15201 None:intergenic 20.0%
!!! TTTTTGTTGTTTTTATGAAG+AGG - tig0022022:15566-15585 Msa1396310:intron 20.0%
!!! AAAACCTTTCTTTTCAATTT+TGG + tig0022022:16566-16585 None:intergenic 20.0%
!!! AAAATTGAAAAGAAAGGTTT+TGG - tig0022022:16565-16584 Msa1396310:CDS 20.0%
!!! AGTAACCATAAAATTTTGTT+AGG - tig0022022:16697-16716 Msa1396310:intron 20.0%
!!! ATCTTCCTAACAAAATTTTA+TGG + tig0022022:16705-16724 None:intergenic 20.0%
!!! GATGTAAAGTTATTTTAAAC+TGG + tig0022022:17036-17055 None:intergenic 20.0%
!! TTTGGATAAATAGCTTAAAT+AGG - tig0022022:17555-17574 Msa1396310:intron 20.0%
!! ATCTACATATACTAATAGAT+AGG - tig0022022:17979-17998 Msa1396310:intron 20.0%
!!! ATGTACAATTTTTAGTTTAG+TGG + tig0022022:18181-18200 None:intergenic 20.0%
!! GAAGAAATATTACTTTAAGT+CGG - tig0022022:18267-18286 Msa1396310:CDS 20.0%
! CAAAACAAAGATATGAAACA+TGG - tig0022022:14379-14398 Msa1396310:three_prime_UTR 25.0%
!!! AATTTGATTTTGAGAAGCAT+AGG + tig0022022:14436-14455 None:intergenic 25.0%
! AATAAATTATACCCTTCCTT+TGG + tig0022022:14642-14661 None:intergenic 25.0%
! TTCAAACTATGATGTTTAAG+TGG - tig0022022:14687-14706 Msa1396310:three_prime_UTR 25.0%
! TCAAACTATGATGTTTAAGT+GGG - tig0022022:14688-14707 Msa1396310:three_prime_UTR 25.0%
! GATAAAAAACACAACTTTGA+AGG + tig0022022:14715-14734 None:intergenic 25.0%
!!! CAAAGTTGTGTTTTTTATCA+TGG - tig0022022:14716-14735 Msa1396310:three_prime_UTR 25.0%
! TTAATTAGTAGTAATTCCAC+TGG - tig0022022:14919-14938 Msa1396310:intron 25.0%
! TCACAAATTTATGAAAGCAA+TGG + tig0022022:15017-15036 None:intergenic 25.0%
! TTGTCCAATAAAAGTTATGT+TGG - tig0022022:15038-15057 Msa1396310:intron 25.0%
! TCTTATGTGTTTATGCTAAT+AGG + tig0022022:15115-15134 None:intergenic 25.0%
!! TAAACACATAAGAGTATGTT+AGG - tig0022022:15122-15141 Msa1396310:intron 25.0%
!! AAACACATAAGAGTATGTTA+GGG - tig0022022:15123-15142 Msa1396310:intron 25.0%
!! AATGTTTTCATAAGCTATAG+TGG + tig0022022:15318-15337 None:intergenic 25.0%
!!! CAATGATTTTTGCTTTTATG+TGG - tig0022022:15441-15460 Msa1396310:intron 25.0%
!! AGGGAATACAATCTAAAATT+TGG - tig0022022:15629-15648 Msa1396310:CDS 25.0%
! AAAATAACATAGATACTGAC+CGG + tig0022022:16339-16358 None:intergenic 25.0%
! ATGAAAAAATAAAGAGCAGA+AGG + tig0022022:16381-16400 None:intergenic 25.0%
! GAAACCAAAATTGAAAAGAA+AGG - tig0022022:16559-16578 Msa1396310:CDS 25.0%
! ATCTCGTTATCATTTAAATG+AGG - tig0022022:17074-17093 Msa1396310:intron 25.0%
! CATTTAAATGAGGAGAAAAT+TGG - tig0022022:17084-17103 Msa1396310:intron 25.0%
! TAATGCGTGTTAATTTAACT+AGG - tig0022022:17165-17184 Msa1396310:CDS 25.0%
! AATGACAATTCTACATGAAT+GGG + tig0022022:17326-17345 None:intergenic 25.0%
! AAATGACAATTCTACATGAA+TGG + tig0022022:17327-17346 None:intergenic 25.0%
! TAAAATCTACTCTCAACATT+TGG - tig0022022:17433-17452 Msa1396310:intron 25.0%
! AAAATCTACTCTCAACATTT+GGG - tig0022022:17434-17453 Msa1396310:intron 25.0%
! TTAAGCTATTTATCCAAACA+GGG + tig0022022:17553-17572 None:intergenic 25.0%
! TTTAAGCTATTTATCCAAAC+AGG + tig0022022:17554-17573 None:intergenic 25.0%
! TATATGTAGATTACTCAAAG+TGG + tig0022022:17970-17989 None:intergenic 25.0%
! TATTCTTCCTAAAATTTGGA+GGG - tig0022022:18112-18131 Msa1396310:intron 25.0%
! CTACTGTTATAGCTTAAATT+AGG - tig0022022:18294-18313 Msa1396310:CDS 25.0%
! ACCTATACTCTATATACATT+GGG + tig0022022:18343-18362 None:intergenic 25.0%
! AACCTATACTCTATATACAT+TGG + tig0022022:18344-18363 None:intergenic 25.0%
AACAAAGATATGAAACATGG+TGG - tig0022022:14382-14401 Msa1396310:three_prime_UTR 30.0%
!!! TTTTTTATCATGGATTCCTC+AGG - tig0022022:14726-14745 Msa1396310:three_prime_UTR 30.0%
! CCTACCAACATAACTTTTAT+TGG + tig0022022:15045-15064 None:intergenic 30.0%
CCAATAAAAGTTATGTTGGT+AGG - tig0022022:15042-15061 Msa1396310:intron 30.0%
! GTTGGTAGGAATAGTATTTA+CGG - tig0022022:15056-15075 Msa1396310:intron 30.0%
! AAGCTATAGTGGAAAACTTA+TGG + tig0022022:15307-15326 None:intergenic 30.0%
!! TCATTGACTAAAGTCTTGTT+TGG + tig0022022:15427-15446 None:intergenic 30.0%
AAAAACAACATCCAGATTAG+AGG + tig0022022:15549-15568 None:intergenic 30.0%
!!! TTGTTTTTATGAAGAGGAGA+AGG - tig0022022:15572-15591 Msa1396310:CDS 30.0%
! TTTTAGATCTCTTCGAAAAC+TGG + tig0022022:15868-15887 None:intergenic 30.0%
!!! CGTTATTTTTTAATGTACCG+AGG - tig0022022:15967-15986 Msa1396310:intron 30.0%
! TTTTTCACCTCCAATGTTAA+CGG + tig0022022:16057-16076 None:intergenic 30.0%
! GTGATTTTCCTTTTAAGCAT+TGG - tig0022022:16142-16161 Msa1396310:intron 30.0%
! TTTTTGTGGCATTATTCCTT+TGG - tig0022022:16190-16209 Msa1396310:intron 30.0%
! TTTTGTGGCATTATTCCTTT+GGG - tig0022022:16191-16210 Msa1396310:intron 30.0%
!!! GGTTTTAGGTTATAATAGCT+GGG - tig0022022:16431-16450 Msa1396310:intron 30.0%
!!! CATTTTTTGCTTAGAAGAGA+AGG + tig0022022:16655-16674 None:intergenic 30.0%
!!! CAATTTTGATTGTGCAGTTA+CGG + tig0022022:16747-16766 None:intergenic 30.0%
CAAAATTGAAAGCTGAAGTT+AGG - tig0022022:16759-16778 Msa1396310:intron 30.0%
ATTAGGCGATTCAATTGTAT+AGG + tig0022022:16844-16863 None:intergenic 30.0%
TAAATTAACACGCATTAGCA+TGG + tig0022022:17162-17181 None:intergenic 30.0%
TCACGAGATGAAAAATATTC+CGG + tig0022022:17869-17888 None:intergenic 30.0%
TTGCTTAAAATTGCTTCCAT+TGG + tig0022022:18057-18076 None:intergenic 30.0%
!! CAAATTTTAGGAAGAATAGC+AGG + tig0022022:18110-18129 None:intergenic 30.0%
CTGCTATTCTTCCTAAAATT+TGG - tig0022022:18108-18127 Msa1396310:intron 30.0%
CTATTCTTCCTAAAATTTGG+AGG - tig0022022:18111-18130 Msa1396310:intron 30.0%
ATTGTCTATAGTAGTGATAG+TGG + tig0022022:18212-18231 None:intergenic 30.0%
CCTATACTCTATATACATTG+GGG + tig0022022:18342-18361 None:intergenic 30.0%
AAATGATGAAGAGGAATGCA+TGG + tig0022022:14479-14498 None:intergenic 35.0%
ATTGAGCTGAAATGATGAAG+AGG + tig0022022:14488-14507 None:intergenic 35.0%
TGCTGAATCTTGTGTCAATT+TGG - tig0022022:14601-14620 Msa1396310:three_prime_UTR 35.0%
GCTGAATCTTGTGTCAATTT+GGG - tig0022022:14602-14621 Msa1396310:three_prime_UTR 35.0%
!! TTGAGCTATTTTCCAAAGGA+AGG - tig0022022:14627-14646 Msa1396310:three_prime_UTR 35.0%
!! TGAGCTATTTTCCAAAGGAA+GGG - tig0022022:14628-14647 Msa1396310:three_prime_UTR 35.0%
GTGGATTCCATAGTTTAAGA+TGG - tig0022022:14896-14915 Msa1396310:intron 35.0%
TTACATACTGTGAGATGGTA+AGG - tig0022022:15513-15532 Msa1396310:intron 35.0%
AATTCTCAATGATCCAGACT+TGG - tig0022022:15655-15674 Msa1396310:intron 35.0%
TCTTGCAGTTCTTTGAATTC+AGG + tig0022022:15698-15717 None:intergenic 35.0%
ATTCAAAGAACTGCAAGAAG+AGG - tig0022022:15700-15719 Msa1396310:intron 35.0%
TTGGAGGTGAAAAACAATTC+AGG - tig0022022:16063-16082 Msa1396310:CDS 35.0%
!! TGCTGATTCCAATGCTTAAA+AGG + tig0022022:16153-16172 None:intergenic 35.0%
!!! TGCAGGTATTGTTGTTTTTG+TGG - tig0022022:16176-16195 Msa1396310:intron 35.0%
!! ATCTTGATAGCGTCTCATTT+CGG + tig0022022:16254-16273 None:intergenic 35.0%
GAATGTTCTATGTTTAACCG+AGG - tig0022022:16404-16423 Msa1396310:intron 35.0%
TCTATGTTTAACCGAGGTTT+CGG - tig0022022:16410-16429 Msa1396310:intron 35.0%
ATAACCTAAAACCGAAACCT+CGG + tig0022022:16424-16443 None:intergenic 35.0%
!!! CGGTTTTAGGTTATAATAGC+TGG - tig0022022:16430-16449 Msa1396310:intron 35.0%
GCATCAACATAATGAAAGTG+TGG - tig0022022:17106-17125 Msa1396310:intron 35.0%
GATTGATGTCAACTAAGAGT+TGG - tig0022022:17128-17147 Msa1396310:intron 35.0%
TGCGTGTTAATTTAACTAGG+TGG - tig0022022:17168-17187 Msa1396310:CDS 35.0%
ACTATGAGCATCATTACACA+AGG - tig0022022:17372-17391 Msa1396310:intron 35.0%
ATAAGTCATCACAGCAAGAA+AGG + tig0022022:17463-17482 None:intergenic 35.0%
!!! GCTGCTTTTATAAGCTATCT+TGG - tig0022022:17682-17701 Msa1396310:intron 35.0%
TCTCGCAAACAATCTTACTA+GGG - tig0022022:17802-17821 Msa1396310:intron 35.0%
AACAAACTAACTCAATCAGC+CGG - tig0022022:17847-17866 Msa1396310:intron 35.0%
ATAGATAGGAATGCATTTGC+AGG - tig0022022:17993-18012 Msa1396310:intron 35.0%
TAGATAGGAATGCATTTGCA+GGG - tig0022022:17994-18013 Msa1396310:intron 35.0%
CTTAAAATTGCTTCCATTGG+CGG + tig0022022:18054-18073 None:intergenic 35.0%
! AATTGCACCCTCCAAATTTT+AGG + tig0022022:18122-18141 None:intergenic 35.0%
AGCTTAAATTAGGAATCTGC+AGG - tig0022022:18304-18323 Msa1396310:CDS 35.0%
CCCCAATGTATATAGAGTAT+AGG - tig0022022:18339-18358 Msa1396310:CDS 35.0%
GATATGAAACATGGTGGCAA+TGG - tig0022022:14388-14407 Msa1396310:three_prime_UTR 40.0%
! GAAGAAGAGCATGAAATGAG+TGG + tig0022022:14548-14567 None:intergenic 40.0%
! GCAGTTTGAGTTTCAGTTTC+TGG + tig0022022:14584-14603 None:intergenic 40.0%
!! GGTCTTGAGCTATTTTCCAA+AGG - tig0022022:14623-14642 Msa1396310:three_prime_UTR 40.0%
TCCTCAGGTTAAAGATGCTT+TGG - tig0022022:14741-14760 Msa1396310:three_prime_UTR 40.0%
! ACCAAAGCATCTTTAACCTG+AGG + tig0022022:14745-14764 None:intergenic 40.0%
!! AAGAAAGCGCTGTTTCAAAC+TGG + tig0022022:14768-14787 None:intergenic 40.0%
TTTGAATCCGAATCCTGTTG+AGG - tig0022022:14786-14805 Msa1396310:CDS 40.0%
!! CATAGAATGCAGACTAGTCT+GGG + tig0022022:14969-14988 None:intergenic 40.0%
! TCATAGAATGCAGACTAGTC+TGG + tig0022022:14970-14989 None:intergenic 40.0%
GCATTCTATGACCTTTGAGT+TGG - tig0022022:14979-14998 Msa1396310:intron 40.0%
! CATAAGAGTATGTTAGGGAG+AGG - tig0022022:15128-15147 Msa1396310:intron 40.0%
TTAGGGAGAGGTTATAGAAG+CGG - tig0022022:15140-15159 Msa1396310:intron 40.0%
GTGACTTACATACTGTGAGA+TGG - tig0022022:15508-15527 Msa1396310:intron 40.0%
AAGTTCAAGCACCATTTCGT+GGG - tig0022022:15898-15917 Msa1396310:intron 40.0%
AATCTCCTAATCCCACGAAA+TGG + tig0022022:15912-15931 None:intergenic 40.0%
TGAATTGCACGCAATATCCT+CGG + tig0022022:15987-16006 None:intergenic 40.0%
AGGATATTGCGTGCAATTCA+AGG - tig0022022:15987-16006 Msa1396310:intron 40.0%
GGATATTGCGTGCAATTCAA+GGG - tig0022022:15988-16007 Msa1396310:intron 40.0%
GATATTGCGTGCAATTCAAG+GGG - tig0022022:15989-16008 Msa1396310:intron 40.0%
ATATTGCGTGCAATTCAAGG+GGG - tig0022022:15990-16009 Msa1396310:intron 40.0%
!!! CCTCTTTTTTACTGTCCCAA+AGG + tig0022022:16209-16228 None:intergenic 40.0%
!! CCTTTGGGACAGTAAAAAAG+AGG - tig0022022:16206-16225 Msa1396310:intron 40.0%
TTGGGACAGTAAAAAAGAGG+AGG - tig0022022:16209-16228 Msa1396310:intron 40.0%
!! TCTTGATAGCGTCTCATTTC+GGG + tig0022022:16253-16272 None:intergenic 40.0%
TAGTTGAACTTGTGCAGCTA+AGG - tig0022022:16301-16320 Msa1396310:CDS 40.0%
AGTTGAACTTGTGCAGCTAA+GGG - tig0022022:16302-16321 Msa1396310:CDS 40.0%
! TTAACCGAGGTTTCGGTTTT+AGG - tig0022022:16417-16436 Msa1396310:intron 40.0%
CTAACAAAACACCACGTCTA+AGG + tig0022022:16513-16532 None:intergenic 40.0%
!! ACGTGGTGTTTTGTTAGTTC+CGG - tig0022022:16516-16535 Msa1396310:CDS 40.0%
! TTTTGTTAGTTCCGGTCATC+TGG - tig0022022:16524-16543 Msa1396310:CDS 40.0%
TTTGTTAGTTCCGGTCATCT+GGG - tig0022022:16525-16544 Msa1396310:CDS 40.0%
GAAAGCTGAAGTTAGGTTCA+AGG - tig0022022:16766-16785 Msa1396310:CDS 40.0%
! TTGTCTTGTCGAGTTGTGAT+TGG + tig0022022:16939-16958 None:intergenic 40.0%
AGAGATCAACAGAAGTCTGA+AGG - tig0022022:17194-17213 Msa1396310:CDS 40.0%
TACATAATACTGCGCCTAGA+TGG - tig0022022:17239-17258 Msa1396310:CDS 40.0%
ACATAATACTGCGCCTAGAT+GGG - tig0022022:17240-17259 Msa1396310:CDS 40.0%
TTTACATCTTAGGCCCTGTT+TGG - tig0022022:17537-17556 Msa1396310:intron 40.0%
AAGCTATCTTGGAGAGCTTA+TGG - tig0022022:17693-17712 Msa1396310:intron 40.0%
CTCTCGCAAACAATCTTACT+AGG - tig0022022:17801-17820 Msa1396310:intron 40.0%
! GGAAGCAATTTTAAGCAAGC+TGG - tig0022022:18059-18078 Msa1396310:CDS 40.0%
!! GTCTATAGTAGTGATAGTGG+AGG + tig0022022:18209-18228 None:intergenic 40.0%
!! AAGCTTGCTGTCATGCATAC+AGG - tig0022022:14830-14849 Msa1396310:intron 45.0%
TGTATTCCCTCAAAGCAGTG+CGG + tig0022022:15619-15638 None:intergenic 45.0%
! GAATTCAGGCAAAGCTCTGA+AGG + tig0022022:15684-15703 None:intergenic 45.0%
GAAGTTCAAGCACCATTTCG+TGG - tig0022022:15897-15916 Msa1396310:intron 45.0%
AAGCACCATTTCGTGGGATT+AGG - tig0022022:15904-15923 Msa1396310:intron 45.0%
CCAGCAGTTTCCAAGATATC+TGG + tig0022022:16026-16045 None:intergenic 45.0%
CCAGATATCTTGGAAACTGC+TGG - tig0022022:16023-16042 Msa1396310:intron 45.0%
AATGCTGCCGTTAACATTGG+AGG - tig0022022:16047-16066 Msa1396310:CDS 45.0%
CATTGGAATCAGCAATGTGC+AGG - tig0022022:16159-16178 Msa1396310:intron 45.0%
! CAACTACGCGATTAGTTGAC+AGG + tig0022022:16287-16306 None:intergenic 45.0%
!! AGTGACTTTAGCTTTGCGCA+AGG - tig0022022:16465-16484 Msa1396310:intron 45.0%
TTGTTAGTTCCGGTCATCTG+GGG - tig0022022:16526-16545 Msa1396310:CDS 45.0%
!! AGGTTTTGGCCTTCAACCAA+AGG - tig0022022:16579-16598 Msa1396310:CDS 45.0%
TCAAGTCTCACCCCAATAGA+TGG + tig0022022:16619-16638 None:intergenic 45.0%
TGAAGTTAGGTTCAAGGCTG+AGG - tig0022022:16772-16791 Msa1396310:CDS 45.0%
! GTCGAGTTGTGATTGGTTGT+TGG + tig0022022:16932-16951 None:intergenic 45.0%
TGTACACGTCTTCACCAACT+GGG + tig0022022:17223-17242 None:intergenic 45.0%
ATGTACACGTCTTCACCAAC+TGG + tig0022022:17224-17243 None:intergenic 45.0%
ATTTGCAGGGTATACCTGAC+TGG - tig0022022:18007-18026 Msa1396310:CDS 45.0%
TTTGCAGGGTATACCTGACT+GGG - tig0022022:18008-18027 Msa1396310:CDS 45.0%
TTTGCAATTTGGTCCCAGTC+AGG + tig0022022:18024-18043 None:intergenic 45.0%
TGACTGGGACCAAATTGCAA+AGG - tig0022022:18023-18042 Msa1396310:CDS 45.0%
AAACATGGTGGCAATGGCCA+TGG - tig0022022:14394-14413 Msa1396310:three_prime_UTR 50.0%
GAATTGTTGCGCTGCAACCA+TGG + tig0022022:14414-14433 None:intergenic 50.0%
GCTTGTGCCTCAACAGGATT+CGG + tig0022022:14796-14815 None:intergenic 50.0%
GCAAGTGAGCACCTCTAATC+TGG - tig0022022:15535-15554 Msa1396310:intron 50.0%
CAAAGCAGTGCGGAGACAAT+CGG + tig0022022:15609-15628 None:intergenic 50.0%
ATTGTCTCCGCACTGCTTTG+AGG - tig0022022:15609-15628 Msa1396310:CDS 50.0%
TTGTCTCCGCACTGCTTTGA+GGG - tig0022022:15610-15629 Msa1396310:CDS 50.0%
!! TTCAGGCAAAGCTCTGAAGG+AGG + tig0022022:15681-15700 None:intergenic 50.0%
! TGCTTTTCTGCCACGTTACC+AGG - tig0022022:15815-15834 Msa1396310:intron 50.0%
GTAGCATTTACAGCAGCTGC+AGG - tig0022022:15939-15958 Msa1396310:intron 50.0%
TGACGGTGCTCCAGATATCT+TGG - tig0022022:16013-16032 Msa1396310:intron 50.0%
GGCAATGCTGCCGTTAACAT+TGG - tig0022022:16044-16063 Msa1396310:CDS 50.0%
! CGATTAGTTGACAGGCGCAA+AGG + tig0022022:16279-16298 None:intergenic 50.0%
TGCAGCTAAGGGACACAGTT+AGG - tig0022022:16313-16332 Msa1396310:CDS 50.0%
CCCAATAGATGGAAGAGCCT+CGG + tig0022022:16608-16627 None:intergenic 50.0%
CCGAGGCTCTTCCATCTATT+GGG - tig0022022:16605-16624 Msa1396310:CDS 50.0%
CGAGGCTCTTCCATCTATTG+GGG - tig0022022:16606-16625 Msa1396310:CDS 50.0%
! AAGTACCGTTCCCATTCTGC+TGG + tig0022022:16806-16825 None:intergenic 50.0%
AAGTCTGAAGGAGTCCCAGT+TGG - tig0022022:17206-17225 Msa1396310:CDS 50.0%
ATCTTCGAACTCGCCCATCT+AGG + tig0022022:17256-17275 None:intergenic 50.0%
ATGGGCGAGTTCGAAGATCA+GGG - tig0022022:17258-17277 Msa1396310:intron 50.0%
GCGGAAGCTCCTTTGCAATT+TGG + tig0022022:18035-18054 None:intergenic 50.0%
AACGCAGCTTGTGCCTCAAC+AGG + tig0022022:14802-14821 None:intergenic 55.0%
CGTGCAATTCAAGGGGGTGA+CGG - tig0022022:15996-16015 Msa1396310:intron 55.0%
GCTAAGGGACACAGTTAGGC+CGG - tig0022022:16317-16336 Msa1396310:CDS 55.0%
! CGCACTGATCTCCTTAGACG+TGG - tig0022022:16499-16518 Msa1396310:intron 55.0%
CTACCTTCTCCCCAGATGAC+CGG + tig0022022:16538-16557 None:intergenic 55.0%
GCCGAGGCTCTTCCATCTAT+TGG - tig0022022:16604-16623 Msa1396310:CDS 55.0%
TCTCGCCAGCAGAATGGGAA+CGG - tig0022022:16798-16817 Msa1396310:CDS 55.0%
GATGGGCGAGTTCGAAGATC+AGG - tig0022022:17257-17276 Msa1396310:intron 55.0%
TGCAAAGGAGCTTCCGCCAA+TGG - tig0022022:18038-18057 Msa1396310:CDS 55.0%
!! GCTCTGAAGGAGGCCAAGTC+TGG + tig0022022:15671-15690 None:intergenic 60.0%
TTCTGCCACGTTACCAGGCG+AGG - tig0022022:15820-15839 Msa1396310:intron 60.0%
AGGCTGGGTGGGGAAGATGT+TGG - tig0022022:15840-15859 Msa1396310:intron 60.0%
GTTCCGGTCATCTGGGGAGA+AGG - tig0022022:16532-16551 Msa1396310:CDS 60.0%
CCTCGGCAGCCTTTGGTTGA+AGG + tig0022022:16591-16610 None:intergenic 60.0%
CCTTCAACCAAAGGCTGCCG+AGG - tig0022022:16588-16607 Msa1396310:CDS 60.0%
AGGCTGTCTCGCCAGCAGAA+TGG - tig0022022:16792-16811 Msa1396310:CDS 60.0%
GGCTGTCTCGCCAGCAGAAT+GGG - tig0022022:16793-16812 Msa1396310:CDS 60.0%
CCACGTTACCAGGCGAGGCT+GGG - tig0022022:15825-15844 Msa1396310:intron 65.0%
GTTACCAGGCGAGGCTGGGT+GGG - tig0022022:15829-15848 Msa1396310:intron 65.0%
TTACCAGGCGAGGCTGGGTG+GGG - tig0022022:15830-15849 Msa1396310:intron 65.0%
GGAAGAGCCTCGGCAGCCTT+TGG + tig0022022:16598-16617 None:intergenic 65.0%
GCCACGTTACCAGGCGAGGC+TGG - tig0022022:15824-15843 Msa1396310:intron 70.0%
! CCCAGCCTCGCCTGGTAACG+TGG + tig0022022:15828-15847 None:intergenic 70.0%
CGTTACCAGGCGAGGCTGGG+TGG - tig0022022:15828-15847 Msa1396310:intron 70.0%
CTTCCCCACCCAGCCTCGCC+TGG + tig0022022:15836-15855 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0022022 gene 14356 18495 14356 ID=Msa1396310;Name=Msa1396310
tig0022022 mRNA 14356 18495 14356 ID=Msa1396310-mRNA-1;Parent=Msa1396310;Name=Msa1396310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=42|0.87|0.88|1|0.87|0.88|9|406|454
tig0022022 exon 14356 14836 14356 ID=Msa1396310-mRNA-1:exon:15501;Parent=Msa1396310-mRNA-1
tig0022022 exon 15568 15664 15568 ID=Msa1396310-mRNA-1:exon:15500;Parent=Msa1396310-mRNA-1
tig0022022 exon 16032 16132 16032 ID=Msa1396310-mRNA-1:exon:15499;Parent=Msa1396310-mRNA-1
tig0022022 exon 16224 16412 16224 ID=Msa1396310-mRNA-1:exon:15498;Parent=Msa1396310-mRNA-1
tig0022022 exon 16513 16670 16513 ID=Msa1396310-mRNA-1:exon:15497;Parent=Msa1396310-mRNA-1
tig0022022 exon 16762 17014 16762 ID=Msa1396310-mRNA-1:exon:15496;Parent=Msa1396310-mRNA-1
tig0022022 exon 17130 17265 17130 ID=Msa1396310-mRNA-1:exon:15495;Parent=Msa1396310-mRNA-1
tig0022022 exon 18000 18103 18000 ID=Msa1396310-mRNA-1:exon:15494;Parent=Msa1396310-mRNA-1
tig0022022 exon 18202 18495 18202 ID=Msa1396310-mRNA-1:exon:15493;Parent=Msa1396310-mRNA-1
tig0022022 five_prime_UTR 18454 18495 18454 ID=Msa1396310-mRNA-1:five_prime_utr;Parent=Msa1396310-mRNA-1
tig0022022 CDS 18202 18453 18202 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 18000 18103 18000 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 17130 17265 17130 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 16762 17014 16762 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 16513 16670 16513 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 16224 16412 16224 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 16032 16132 16032 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 15568 15664 15568 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 CDS 14762 14836 14762 ID=Msa1396310-mRNA-1:cds;Parent=Msa1396310-mRNA-1
tig0022022 three_prime_UTR 14356 14761 14356 ID=Msa1396310-mRNA-1:three_prime_utr;Parent=Msa1396310-mRNA-1
Gene Sequence

>Msa1396310

ATGGTGGCAATGGCCATGGTTGCAGCGCAACAATTCCTATGCTTCTCAAAATCAAATTGTAGAATCACAACAACAAGACCATGCATTCCTCTTCATCATTTCAGCTCAATTCTTCTACGCTCACGCAATAACAAGAAGATTCAGTTTCCACTCATTTCATGCTCTTCTTCTTCATCACAGACACCAGAAACTGAAACTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTGAGCTATTTTCCAAAGGAAGGGTTAAAGATGCTTTGGTCCAGTTTGAAACAGCGCTTTCTTTGAATCCGAATCCTGTTGAGGCACAAGCTGCGTTCTATAACAAAGCTTGCTGTCATGCATACAGAGGAGAAGGAAAGAAAGCTGCCGATTGTCTCCGCACTGCTTTGAGGGAATACAATCTAAAATTTGGTACAATTCTCAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTGCAAGAAGAGGCGAGGCTGGGTGGGGAAGATGTTGGCTCCAGTTTTCGAAGAGATCTAAAACTTATCAGTGAAGTTCAAGCACCATTTCGTGGGATTAGGAGATTCTTTTACGTAGCATTTACAGCAGCTGCAGGAATATCGTTATTTTTTAATGTACCGAGGATATTGCGTGCAATTCAAGGGGGTGACGGTGCTCCAGATATCTTGGAAACTGCTGGCAATGCTGCCGTTAACATTGGAGGTGAAAAACAATTCAGGTTCAGTATTGTTGTTTTTGTGGCATTATTCCTTTGGGACAGTAAAAAAGAGGAGGAGCAGATTGCGCAAATATCCCGAAATGAGACGCTATCAAGATTGCCTTTGCGCCTGTCAACTAATCGCGTAGTTGAACTTGTGCAGCTAAGGGACACAGTTAGGCCGGTTATAATAGCTGGGAAAAAAGAAACAGTGACTTTAGCTTTGCGCAAGGCAGAGAGATTTCGCACTGATCTCCTTAGACGTGGTGTTTTGTTAGTTCCGGTCATCTGGGGAGAAGGTAGAGAAACCAAAATTGAAAAGAAAGGTTTTGGCCTTCAACCAAAGGCTGCCGAGGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAACACAGTCCGTAACTGCACAATCAAAATTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGCTGTCTCGCCAGCAGAATGGGAACGGTGGATAAGAGATCAACAGAAGTCTGAAGGAGTCCCAGTTGGTGAAGACGTGTACATAATACTGCGCCTAGATGGGCGAGTTCGAAGATCAGGGAGAGGTATACCTGACTGGGACCAAATTGCAAAGGAGCTTCCGCCAATGGAAGCAATTTTAAGCAAGCTGGAAAGATGA

Protein sequence

>Msa1396310

MVAMAMVAAQQFLCFSKSNCRITTTRPCIPLHHFSSILLRSRNNKKIQFPLISCSSSSSQTPETETQTAESCVNLGLELFSKGRVKDALVQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTAAAGISLFFNVPRILRAIQGGDGAPDILETAGNAAVNIGGEKQFRFSIVVFVALFLWDSKKEEEQIAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVIIAGKKETVTLALRKAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRTQSVTAQSKLKAEVRFKAEAVSPAEWERWIRDQQKSEGVPVGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKLER*