AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349170 MtrunA17_Chr1g0199181 93.171 205 4 4 1 195 2 206 1.82e-134 376
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349170 AT3G10405.1 60.256 156 62 0 40 195 52 207 1.30e-62 194

Find 58 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGAATATGTTTCTTATC+TGG 0.245819 tig0010676:+15608 Msa1349170:CDS
CTAGGATCCTCAACATTTAT+AGG 0.279112 tig0010676:-13750 None:intergenic
GTACTTATTAGAGTTGAAAA+TGG 0.282086 tig0010676:-13387 None:intergenic
CCTACTGGAACTGGAAAGTA+TGG 0.341370 tig0010676:+16158 Msa1349170:three_prime_UTR
GAATCTTCAACTAACTCATT+AGG 0.348263 tig0010676:-13717 None:intergenic
TTCAAATCCCAACAACAATA+AGG 0.349379 tig0010676:-14033 None:intergenic
TGTCATTTGGCCTTGGAATC+TGG 0.349829 tig0010676:+13288 Msa1349170:CDS
TTTGCAGGCCTTATTGTTGT+TGG 0.358466 tig0010676:+14025 Msa1349170:intron
TTGCAGGCCTTATTGTTGTT+GGG 0.374699 tig0010676:+14026 Msa1349170:intron
GTTGATGCTTTCCCTGAAAC+TGG 0.375894 tig0010676:+15659 Msa1349170:CDS
GAGCATATGCCTACTGGAAC+TGG 0.381520 tig0010676:+16149 Msa1349170:three_prime_UTR
TCTTCTATCAACTCATATAG+TGG 0.394763 tig0010676:-15873 None:intergenic
TGGAACATGAAGGAGGCATT+CGG 0.409372 tig0010676:-13325 None:intergenic
TCAACTCTAATAAGTACAAC+TGG 0.410589 tig0010676:+13393 Msa1349170:CDS
GGAAGCAAAATGATGTCATT+TGG 0.414656 tig0010676:+13275 Msa1349170:exon
TAGTGGTTTGTTAGCACTGT+TGG 0.421898 tig0010676:-15856 None:intergenic
TGTTTCTTATCTGGTTTAAG+TGG 0.439973 tig0010676:+15617 Msa1349170:CDS
CTTACAGGTGGACCATATCT+AGG 0.443659 tig0010676:-13768 None:intergenic
TTGAAAATGGAACAAGAAGA+AGG 0.451288 tig0010676:-13374 None:intergenic
GGAACATGAAGGAGGCATTC+GGG 0.451596 tig0010676:-13324 None:intergenic
ATTTATGAGCATATGCCTAC+TGG 0.466485 tig0010676:+16143 Msa1349170:three_prime_UTR
AACTGGAAAGTATGGAAGAT+TGG 0.471616 tig0010676:+16166 Msa1349170:three_prime_UTR
AGTGGTTTGTTAGCACTGTT+GGG 0.472960 tig0010676:-15855 None:intergenic
AGTGAGCTCTTAGAATTCAC+TGG 0.481795 tig0010676:-16029 None:intergenic
AAACCTTCAGAGGATGCTCT+TGG 0.490604 tig0010676:-13419 None:intergenic
CCAGATAAGAAACATATTCG+TGG 0.493847 tig0010676:-15608 None:intergenic
CATTGAAACATGGGAAAACA+TGG 0.494004 tig0010676:-13345 None:intergenic
AAAATGATGTCATTTGGCCT+TGG 0.495524 tig0010676:+13281 Msa1349170:exon
ACTAAAACCAGCCGCGTTTG+CGG 0.496458 tig0010676:+15824 Msa1349170:CDS
ACATGCTTACTCGTTCACTC+TGG 0.498624 tig0010676:+15062 Msa1349170:CDS
ACAAGAGCCGCAAACGCGGC+TGG 0.501981 tig0010676:-15831 None:intergenic
ATTTGTTCCTATAAATGTTG+AGG 0.506384 tig0010676:+13743 Msa1349170:CDS
CACGGGAGATCATGAGATGT+TGG 0.526608 tig0010676:+15899 Msa1349170:CDS
GCAAACGGATAAAAGAACTT+AGG 0.527966 tig0010676:+13241 Msa1349170:five_prime_UTR
CTTATCTGGTTTAAGTGGAG+AGG 0.544954 tig0010676:+15622 Msa1349170:CDS
AGAGAGTTTAGAAGAGGTCA+AGG 0.549225 tig0010676:+15105 Msa1349170:CDS
TGAACGAGTAAGCATGTCCT+TGG 0.551105 tig0010676:-15056 None:intergenic
CAAATAAGACAAACCTTCAG+AGG 0.558257 tig0010676:-13429 None:intergenic
CATGCTTACTCGTTCACTCT+GGG 0.559754 tig0010676:+15063 Msa1349170:CDS
AATGTTGAGGATCCTAGATA+TGG 0.565843 tig0010676:+13756 Msa1349170:CDS
GACATCTCAACCAGATTCCA+AGG 0.574102 tig0010676:-13298 None:intergenic
CCATACTTTCCAGTTCCAGT+AGG 0.574717 tig0010676:-16158 None:intergenic
AGGAGAAGACATTGAAACAT+GGG 0.575410 tig0010676:-13354 None:intergenic
AGAACTTAGGAAAGTTGCAG+AGG 0.588397 tig0010676:+13254 Msa1349170:five_prime_UTR
ACTCCAAGAGCATCCTCTGA+AGG 0.589756 tig0010676:+13416 Msa1349170:CDS
TGAGTTGATAGAAGAAATCA+CGG 0.591951 tig0010676:+15881 Msa1349170:CDS
ACATGAGTAGAAGAAGCAAA+CGG 0.592780 tig0010676:+13226 Msa1349170:five_prime_UTR
AAGGAGAAGACATTGAAACA+TGG 0.593929 tig0010676:-13355 None:intergenic
AACACAAGAGAGTTTAGAAG+AGG 0.600712 tig0010676:+15099 Msa1349170:CDS
GGAGATCATGAGATGTTGGT+AGG 0.606238 tig0010676:+15903 Msa1349170:CDS
GGGAACAAGAGCCGCAAACG+CGG 0.631180 tig0010676:-15835 None:intergenic
GAATTCTAAGAGCTCACTTG+CGG 0.631510 tig0010676:+16034 Msa1349170:CDS
GTGAGCTCTTAGAATTCACT+GGG 0.631634 tig0010676:-16028 None:intergenic
GTTAGAGGGTGAATTCCTGA+AGG 0.640466 tig0010676:+14618 Msa1349170:CDS
TGGGAAAACATGGAACATGA+AGG 0.642942 tig0010676:-13335 None:intergenic
GAAAACATGGAACATGAAGG+AGG 0.688873 tig0010676:-13332 None:intergenic
GTAGGTCATCTATTGTACCA+AGG 0.708999 tig0010676:+15039 Msa1349170:intron
GAGTTGATAGAAGAAATCAC+GGG 0.709286 tig0010676:+15882 Msa1349170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTAAATGATTTGATTA+AGG - tig0010676:14172-14191 None:intergenic 15.0%
!! ACTTAAATTCTTAATATTAC+GGG - tig0010676:14234-14253 None:intergenic 15.0%
!! CACTTAAATTCTTAATATTA+CGG - tig0010676:14235-14254 None:intergenic 15.0%
!!! TCTTGAAATTTTTTATACTA+AGG + tig0010676:14354-14373 Msa1349170:intron 15.0%
!! AAAGATGTAAAATAATAATG+TGG - tig0010676:14539-14558 None:intergenic 15.0%
!!! ATTAGGATACATTAAAATTT+TGG - tig0010676:14961-14980 None:intergenic 15.0%
!! TTTCGATATATAAGAAAATT+AGG - tig0010676:14978-14997 None:intergenic 15.0%
!! AATGATGAATTCTTAATAAA+CGG - tig0010676:15287-15306 None:intergenic 15.0%
!! TTAAACTATTTATCCAAACA+TGG + tig0010676:13602-13621 Msa1349170:intron 20.0%
!! ATCTTTATAAAGAAATGTTG+TGG + tig0010676:14110-14129 Msa1349170:intron 20.0%
!! ATAATTAAACTCATTGATCT+TGG - tig0010676:14693-14712 None:intergenic 20.0%
!!! AAAATTTTGGTCACATATTA+GGG - tig0010676:14948-14967 None:intergenic 20.0%
!!! TAAAATTTTGGTCACATATT+AGG - tig0010676:14949-14968 None:intergenic 20.0%
!!! GTTTTCTGATTTCAAATTTA+TGG + tig0010676:15354-15373 Msa1349170:intron 20.0%
!!! ATTGATTTTATCGATAAGTT+TGG + tig0010676:15718-15737 Msa1349170:intron 20.0%
!!! ATTTGAAATTTGTTTTATGC+AGG + tig0010676:15801-15820 Msa1349170:intron 20.0%
! GTACTTATTAGAGTTGAAAA+TGG - tig0010676:13390-13409 None:intergenic 25.0%
! ATTTGTTCCTATAAATGTTG+AGG + tig0010676:13743-13762 Msa1349170:CDS 25.0%
! GAACATTCTTTCACAAAAAA+AGG - tig0010676:13925-13944 None:intergenic 25.0%
! ATGTTCAATCAATCTAACTT+AGG + tig0010676:13939-13958 Msa1349170:intron 25.0%
! AGGAAATTTCTACATGTAAA+AGG + tig0010676:14374-14393 Msa1349170:intron 25.0%
! GCTTATAGTAAATTGCAAAA+TGG + tig0010676:14442-14461 Msa1349170:intron 25.0%
! GTAAATTGCAAAATGGATAT+AGG + tig0010676:14449-14468 Msa1349170:intron 25.0%
! AGATAAAATACGAACATGAT+AGG - tig0010676:14665-14684 None:intergenic 25.0%
! AATGTAACATATTGCATTGT+AGG + tig0010676:15021-15040 Msa1349170:intron 25.0%
! ATTTGCATGAATTGTTAAGT+AGG + tig0010676:15308-15327 Msa1349170:intron 25.0%
! GGTCATGATTAATTGATTAT+AGG + tig0010676:15332-15351 Msa1349170:intron 25.0%
TTGAAAATGGAACAAGAAGA+AGG - tig0010676:13377-13396 None:intergenic 30.0%
TCAACTCTAATAAGTACAAC+TGG + tig0010676:13393-13412 Msa1349170:CDS 30.0%
GAGTGTATCTATCTATCATA+TGG + tig0010676:13451-13470 Msa1349170:intron 30.0%
CTATCTATCATATGGAAACA+TGG + tig0010676:13459-13478 Msa1349170:intron 30.0%
TTCATAAGTTATCCAACTCA+TGG - tig0010676:13521-13540 None:intergenic 30.0%
ACTATTTATCCAAACATGGA+TGG + tig0010676:13606-13625 Msa1349170:intron 30.0%
!!! TGTTATTTTGCTTATCATGC+AGG + tig0010676:13690-13709 Msa1349170:intron 30.0%
GAATCTTCAACTAACTCATT+AGG - tig0010676:13720-13739 None:intergenic 30.0%
AAAAACTAACCATGACTTAC+AGG - tig0010676:13786-13805 None:intergenic 30.0%
CTCAAAATGCATATAAAGTG+AGG - tig0010676:13899-13918 None:intergenic 30.0%
TTCAAATCCCAACAACAATA+AGG - tig0010676:14036-14055 None:intergenic 30.0%
! TGAAGCAGATGAACATTTTA+AGG + tig0010676:14052-14071 Msa1349170:CDS 30.0%
ATTAACATCATCCATGCAAT+AGG + tig0010676:14079-14098 Msa1349170:intron 30.0%
GATTATCATATCCTATTGCA+TGG - tig0010676:14093-14112 None:intergenic 30.0%
ACAATAATCAGAGCAATGAT+TGG - tig0010676:14294-14313 None:intergenic 30.0%
! GTTGCTCTATCAATCATTTT+GGG - tig0010676:14334-14353 None:intergenic 30.0%
! AGTTGCTCTATCAATCATTT+TGG - tig0010676:14335-14354 None:intergenic 30.0%
AAACGATTGAACAACACATT+TGG - tig0010676:14562-14581 None:intergenic 30.0%
!! ACAGTTTTTGAAAGAGTTAG+AGG + tig0010676:14603-14622 Msa1349170:CDS 30.0%
!! CAGTTTTTGAAAGAGTTAGA+GGG + tig0010676:14604-14623 Msa1349170:CDS 30.0%
! ATAAGATGTTTGTTACCTTC+AGG - tig0010676:14636-14655 None:intergenic 30.0%
CATTTGTTTATTCAGACTGT+TGG - tig0010676:14729-14748 None:intergenic 30.0%
ACAATCTTTGGCTATTAAAG+TGG - tig0010676:14757-14776 None:intergenic 30.0%
TTGTCTGTATTGCATTATCT+AGG - tig0010676:14827-14846 None:intergenic 30.0%
GATGAAAATAGTACATCACT+CGG - tig0010676:15147-15166 None:intergenic 30.0%
ACTACAAATTCATGAACAGA+TGG - tig0010676:15187-15206 None:intergenic 30.0%
ATGGAGAATTATCATTTGTC+TGG + tig0010676:15373-15392 Msa1349170:intron 30.0%
ATTGCTACAAAGTTCTTGAT+TGG - tig0010676:15430-15449 None:intergenic 30.0%
CATATGTTACTAATGTTCCA+AGG + tig0010676:15472-15491 Msa1349170:intron 30.0%
! TGTTTCTTATCTGGTTTAAG+TGG + tig0010676:15617-15636 Msa1349170:CDS 30.0%
TCTTCTATCAACTCATATAG+TGG - tig0010676:15876-15895 None:intergenic 30.0%
!! TGAGTTGATAGAAGAAATCA+CGG + tig0010676:15881-15900 Msa1349170:CDS 30.0%
ACATGAGTAGAAGAAGCAAA+CGG + tig0010676:13226-13245 Msa1349170:five_prime_UTR 35.0%
GCAAACGGATAAAAGAACTT+AGG + tig0010676:13241-13260 Msa1349170:five_prime_UTR 35.0%
GGAAGCAAAATGATGTCATT+TGG + tig0010676:13275-13294 Msa1349170:exon 35.0%
! AAAATGATGTCATTTGGCCT+TGG + tig0010676:13281-13300 Msa1349170:exon 35.0%
CATTGAAACATGGGAAAACA+TGG - tig0010676:13348-13367 None:intergenic 35.0%
AGGAGAAGACATTGAAACAT+GGG - tig0010676:13357-13376 None:intergenic 35.0%
AAGGAGAAGACATTGAAACA+TGG - tig0010676:13358-13377 None:intergenic 35.0%
CAAATAAGACAAACCTTCAG+AGG - tig0010676:13432-13451 None:intergenic 35.0%
TTCAGCTTATTTCCATGAGT+TGG + tig0010676:13506-13525 Msa1349170:intron 35.0%
AACTCTCATTCCTTGAAAGT+TGG + tig0010676:13647-13666 Msa1349170:intron 35.0%
AATTTGAGCACCAACTTTCA+AGG - tig0010676:13660-13679 None:intergenic 35.0%
CTAGGATCCTCAACATTTAT+AGG - tig0010676:13753-13772 None:intergenic 35.0%
AATGTTGAGGATCCTAGATA+TGG + tig0010676:13756-13775 Msa1349170:CDS 35.0%
ACTTCTGCAGAAATCTCATA+TGG + tig0010676:13861-13880 Msa1349170:intron 35.0%
CTTCTGCAGAAATCTCATAT+GGG + tig0010676:13862-13881 Msa1349170:intron 35.0%
TTCTGCAGAAATCTCATATG+GGG + tig0010676:13863-13882 Msa1349170:intron 35.0%
CTTAGGACCAAAACTTAGAA+CGG + tig0010676:13956-13975 Msa1349170:intron 35.0%
ATTCATATGTAGCTAAGTGC+AGG + tig0010676:13990-14009 Msa1349170:intron 35.0%
TTCATATGTAGCTAAGTGCA+GGG + tig0010676:13991-14010 Msa1349170:intron 35.0%
!!! AGGGGTTTCTTTTATTTTGC+AGG + tig0010676:14010-14029 Msa1349170:intron 35.0%
TTCATGTACGTTGATCAGAA+CGG - tig0010676:14263-14282 None:intergenic 35.0%
AGGTTACAATTACAGCATGT+AGG + tig0010676:14394-14413 Msa1349170:intron 35.0%
TTGTGCATTGGAACAATCTT+TGG - tig0010676:14769-14788 None:intergenic 35.0%
AAGAAGTAGTTGTTGTGCAT+TGG - tig0010676:14781-14800 None:intergenic 35.0%
TAGTCACCACAAATAGACAA+AGG + tig0010676:14917-14936 Msa1349170:intron 35.0%
GAAAAGCCTTTGTCTATTTG+TGG - tig0010676:14926-14945 None:intergenic 35.0%
AACACAAGAGAGTTTAGAAG+AGG + tig0010676:15099-15118 Msa1349170:CDS 35.0%
AATTCATGAACAGATGGAGA+GGG - tig0010676:15181-15200 None:intergenic 35.0%
AAATTCATGAACAGATGGAG+AGG - tig0010676:15182-15201 None:intergenic 35.0%
TGCATGAATTGTTAAGTAGG+TGG + tig0010676:15311-15330 Msa1349170:intron 35.0%
CCAGATAAGAAACATATTCG+TGG - tig0010676:15611-15630 None:intergenic 35.0%
CCACGAATATGTTTCTTATC+TGG + tig0010676:15608-15627 Msa1349170:CDS 35.0%
!!! GATTTTGGTTACCAGTTTCA+GGG - tig0010676:15673-15692 None:intergenic 35.0%
!!! AGATTTTGGTTACCAGTTTC+AGG - tig0010676:15674-15693 None:intergenic 35.0%
TGCATGAATGATAGATCTAC+TGG + tig0010676:15752-15771 Msa1349170:intron 35.0%
!! GAGTTGATAGAAGAAATCAC+GGG + tig0010676:15882-15901 Msa1349170:CDS 35.0%
ATTTATGAGCATATGCCTAC+TGG + tig0010676:16143-16162 Msa1349170:three_prime_UTR 35.0%
! AACTGGAAAGTATGGAAGAT+TGG + tig0010676:16166-16185 Msa1349170:three_prime_UTR 35.0%
AGAACTTAGGAAAGTTGCAG+AGG + tig0010676:13254-13273 Msa1349170:five_prime_UTR 40.0%
GAAAACATGGAACATGAAGG+AGG - tig0010676:13335-13354 None:intergenic 40.0%
TGGGAAAACATGGAACATGA+AGG - tig0010676:13338-13357 None:intergenic 40.0%
AACTAACCATGACTTACAGG+TGG - tig0010676:13783-13802 None:intergenic 40.0%
TCTGCAGAAATCTCATATGG+GGG + tig0010676:13864-13883 Msa1349170:intron 40.0%
!! TCGACAACCGTTCTAAGTTT+TGG - tig0010676:13966-13985 None:intergenic 40.0%
TCATATGTAGCTAAGTGCAG+GGG + tig0010676:13992-14011 Msa1349170:intron 40.0%
!! TTTGCAGGCCTTATTGTTGT+TGG + tig0010676:14025-14044 Msa1349170:intron 40.0%
!! TTGCAGGCCTTATTGTTGTT+GGG + tig0010676:14026-14045 Msa1349170:intron 40.0%
CAAAAGAGAGATCGAGGAAA+AGG - tig0010676:14208-14227 None:intergenic 40.0%
GTAGGTCATCTATTGTACCA+AGG + tig0010676:15039-15058 Msa1349170:intron 40.0%
AGAGAGTTTAGAAGAGGTCA+AGG + tig0010676:15105-15124 Msa1349170:CDS 40.0%
ACGGCTGTCAAAAATCACAA+GGG - tig0010676:15268-15287 None:intergenic 40.0%
AACGGCTGTCAAAAATCACA+AGG - tig0010676:15269-15288 None:intergenic 40.0%
! ATGTTCCAAGGCCTTTTTAG+TGG + tig0010676:15484-15503 Msa1349170:intron 40.0%
!! TGTTCCAAGGCCTTTTTAGT+GGG + tig0010676:15485-15504 Msa1349170:intron 40.0%
ACTTGTCTATCTGCAATGCA+AGG - tig0010676:15583-15602 None:intergenic 40.0%
! CTTATCTGGTTTAAGTGGAG+AGG + tig0010676:15622-15641 Msa1349170:CDS 40.0%
!! CTTCAGCACTGAACAGATTT+TGG - tig0010676:15688-15707 None:intergenic 40.0%
!! AGTGGTTTGTTAGCACTGTT+GGG - tig0010676:15858-15877 None:intergenic 40.0%
!! TAGTGGTTTGTTAGCACTGT+TGG - tig0010676:15859-15878 None:intergenic 40.0%
GTGAGCTCTTAGAATTCACT+GGG - tig0010676:16031-16050 None:intergenic 40.0%
AGTGAGCTCTTAGAATTCAC+TGG - tig0010676:16032-16051 None:intergenic 40.0%
! GAATTCTAAGAGCTCACTTG+CGG + tig0010676:16034-16053 Msa1349170:CDS 40.0%
!! TGTCATTTGGCCTTGGAATC+TGG + tig0010676:13288-13307 Msa1349170:CDS 45.0%
GACATCTCAACCAGATTCCA+AGG - tig0010676:13301-13320 None:intergenic 45.0%
!! TGGAACATGAAGGAGGCATT+CGG - tig0010676:13328-13347 None:intergenic 45.0%
AAACCTTCAGAGGATGCTCT+TGG - tig0010676:13422-13441 None:intergenic 45.0%
GCAACAAGACCATCCATGTT+TGG - tig0010676:13618-13637 None:intergenic 45.0%
CTTACAGGTGGACCATATCT+AGG - tig0010676:13771-13790 None:intergenic 45.0%
TATGGTCCACCTGTAAGTCA+TGG + tig0010676:13774-13793 Msa1349170:intron 45.0%
GGGATACAAAAGAGAGATCG+AGG - tig0010676:14214-14233 None:intergenic 45.0%
GTTAGAGGGTGAATTCCTGA+AGG + tig0010676:14618-14637 Msa1349170:CDS 45.0%
TGAACGAGTAAGCATGTCCT+TGG - tig0010676:15059-15078 None:intergenic 45.0%
ACATGCTTACTCGTTCACTC+TGG + tig0010676:15062-15081 Msa1349170:CDS 45.0%
CATGCTTACTCGTTCACTCT+GGG + tig0010676:15063-15082 Msa1349170:CDS 45.0%
AGCATTGCGACCCACTAAAA+AGG - tig0010676:15498-15517 None:intergenic 45.0%
GTTGATGCTTTCCCTGAAAC+TGG + tig0010676:15659-15678 Msa1349170:CDS 45.0%
GGAGATCATGAGATGTTGGT+AGG + tig0010676:15903-15922 Msa1349170:CDS 45.0%
! ATCTTTTATCGCGTGCAGAC+TGG + tig0010676:15985-16004 Msa1349170:intron 45.0%
CCATACTTTCCAGTTCCAGT+AGG - tig0010676:16161-16180 None:intergenic 45.0%
CCTACTGGAACTGGAAAGTA+TGG + tig0010676:16158-16177 Msa1349170:three_prime_UTR 45.0%
!! GGAACATGAAGGAGGCATTC+GGG - tig0010676:13327-13346 None:intergenic 50.0%
!! ACTCCAAGAGCATCCTCTGA+AGG + tig0010676:13416-13435 Msa1349170:CDS 50.0%
ATGAACAGATGGAGAGGGAG+CGG - tig0010676:15176-15195 None:intergenic 50.0%
ACTAAAACCAGCCGCGTTTG+CGG + tig0010676:15824-15843 Msa1349170:CDS 50.0%
CACGGGAGATCATGAGATGT+TGG + tig0010676:15899-15918 Msa1349170:CDS 50.0%
GAGCATATGCCTACTGGAAC+TGG + tig0010676:16149-16168 Msa1349170:three_prime_UTR 50.0%
! CGAGGAAAAGGCACAGCTGA+AGG - tig0010676:14196-14215 None:intergenic 55.0%
GCGACCCACTAAAAAGGCCT+TGG - tig0010676:15492-15511 None:intergenic 55.0%
GGGAACAAGAGCCGCAAACG+CGG - tig0010676:15838-15857 None:intergenic 60.0%
ACAAGAGCCGCAAACGCGGC+TGG - tig0010676:15834-15853 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0010676 gene 13178 16284 13178 ID=Msa1349170;Name=Msa1349170
tig0010676 mRNA 13178 16284 13178 ID=Msa1349170-mRNA-1;Parent=Msa1349170;Name=Msa1349170-mRNA-1;_AED=0.24;_eAED=0.24;_QI=106|0.85|0.87|1|1|1|8|196|223
tig0010676 exon 13178 13437 13178 ID=Msa1349170-mRNA-1:exon:6728;Parent=Msa1349170-mRNA-1
tig0010676 exon 13712 13785 13712 ID=Msa1349170-mRNA-1:exon:6729;Parent=Msa1349170-mRNA-1
tig0010676 exon 14032 14073 14032 ID=Msa1349170-mRNA-1:exon:6730;Parent=Msa1349170-mRNA-1
tig0010676 exon 14598 14639 14598 ID=Msa1349170-mRNA-1:exon:6731;Parent=Msa1349170-mRNA-1
tig0010676 exon 15043 15126 15043 ID=Msa1349170-mRNA-1:exon:6732;Parent=Msa1349170-mRNA-1
tig0010676 exon 15593 15680 15593 ID=Msa1349170-mRNA-1:exon:6733;Parent=Msa1349170-mRNA-1
tig0010676 exon 15823 15924 15823 ID=Msa1349170-mRNA-1:exon:6734;Parent=Msa1349170-mRNA-1
tig0010676 exon 16003 16284 16003 ID=Msa1349170-mRNA-1:exon:6735;Parent=Msa1349170-mRNA-1
tig0010676 five_prime_UTR 13178 13283 13178 ID=Msa1349170-mRNA-1:five_prime_utr;Parent=Msa1349170-mRNA-1
tig0010676 CDS 13284 13437 13284 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 CDS 13712 13785 13712 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 CDS 14032 14073 14032 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 CDS 14598 14639 14598 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 CDS 15043 15126 15043 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 CDS 15593 15680 15593 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 CDS 15823 15924 15823 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 CDS 16003 16088 16003 ID=Msa1349170-mRNA-1:cds;Parent=Msa1349170-mRNA-1
tig0010676 three_prime_UTR 16089 16284 16089 ID=Msa1349170-mRNA-1:three_prime_utr;Parent=Msa1349170-mRNA-1
Gene Sequence

>Msa1349170

ATGATGTCATTTGGCCTTGGAATCTGGTTGAGATGTCACGCCCGAATGCCTCCTTCATGTTCCATGTTTTCCCATGTTTCAATGTCTTCTCCTTCTTCTTGTTCCATTTTCAACTCTAATAAGTACAACTGGACTCCAAGAGCATCCTCTGAAGGACTTCCTAATGAGTTAGTTGAAGATTCAAAATTTGTTCCTATAAATGTTGAGGATCCTAGATATGGTCCACCTGCCTTATTGTTGTTGGGATTTGAAGCAGATGAACATTTTAAGATTCAACAGTTTTTGAAAGAGTTAGAGGGTGAATTCCTGAAGGTCATCTATTGTACCAAGGACATGCTTACTCGTTCACTCTGGGATGTAATGCATACAACACAAGAGAGTTTAGAAGAGGTCAAGATAGACAAGTCACTTCCACGAATATGTTTCTTATCTGGTTTAAGTGGAGAGGAGACGATGATGTTCGTTGATGCTTTCCCTGAAACTGGACTAAAACCAGCCGCGTTTGCGGCTCTTGTTCCCAACAGTGCTAACAAACCACTATATGAGTTGATAGAAGAAATCACGGGAGATCATGAGATGTTGGTAGACTGGAGAGCAGTTGTGATAAAATTCCCAGTGAATTCTAAGAGCTCACTTGCGGAGCGTACGCATTATCGATATGAATGTACTTAG

Protein sequence

>Msa1349170

MMSFGLGIWLRCHARMPPSCSMFSHVSMSSPSSCSIFNSNKYNWTPRASSEGLPNELVEDSKFVPINVEDPRYGPPALLLLGFEADEHFKIQQFLKELEGEFLKVIYCTKDMLTRSLWDVMHTTQESLEEVKIDKSLPRICFLSGLSGEETMMFVDAFPETGLKPAAFAALVPNSANKPLYELIEEITGDHEMLVDWRAVVIKFPVNSKSSLAERTHYRYECT*