AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136040 MtrunA17_Chr1g0207181 97.021 235 7 0 1 235 1 235 1.61e-174 479
Msa0136040 MtrunA17_Chr3g0141301 37.056 197 112 6 1 189 44 236 2.24e-35 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136040 AT1G04640.1 74.043 235 61 0 1 235 1 235 1.48e-132 373
Msa0136040 AT1G04640.2 74.043 235 61 0 1 235 1 235 1.48e-132 373
Msa0136040 AT1G47578.1 35.323 201 117 4 23 214 70 266 5.59e-34 123
Msa0136040 AT4G31050.1 35.047 214 122 6 14 214 54 263 6.14e-34 123

Find 73 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCTTGAGGTATGGAAAA+TGG 0.246851 1_3:+67835022 Msa0136040:CDS
AATGGGAGTCGTCAACTATT+TGG 0.263377 1_3:+67835040 Msa0136040:CDS
CCTGGACGGAAGTGCGAGAC+TGG 0.289747 1_3:+67835395 Msa0136040:CDS
ATCCTGATTTAAACTACTTT+AGG 0.329725 1_3:+67835504 Msa0136040:CDS
ATTAATCCCTCAGTCAGAAT+TGG 0.351556 1_3:+67835187 Msa0136040:CDS
AAGATAGAATTCCCAGTGTT+TGG 0.352118 1_3:-67834467 None:intergenic
TATCCATATGATATGTGAAT+TGG 0.352847 1_3:+67835835 Msa0136040:three_prime_UTR
AGATTGCGAGGGAATGGAAT+TGG 0.374876 1_3:-67834492 None:intergenic
GGAGGAGACATTACATTTCA+TGG 0.377047 1_3:+67835245 Msa0136040:CDS
ATTGAACTGGCAGGTCTATA+CGG 0.398561 1_3:+67835359 Msa0136040:CDS
TGCCTAAAGTAGTTTAAATC+AGG 0.405093 1_3:-67835506 None:intergenic
AGAAGAAGATTGCGAGGGAA+TGG 0.421999 1_3:-67834498 None:intergenic
GTGTCCCGGAGCGATATAAT+AGG 0.424169 1_3:-67835290 None:intergenic
ATCCATATGATATGTGAATT+GGG 0.424782 1_3:+67835836 Msa0136040:three_prime_UTR
TTGGTTATGATAACCTGGTT+TGG 0.424805 1_3:+67835648 Msa0136040:CDS
TGCCCAATTCACATATCATA+TGG 0.431672 1_3:-67835838 None:intergenic
TGAGTTAACTATGATTGAAC+TGG 0.440439 1_3:+67835346 Msa0136040:CDS
CTCTTGTATTATTTCTTCTG+CGG 0.453281 1_3:-67835597 None:intergenic
ACCCTTGAGGTATGGAAAAT+GGG 0.459093 1_3:+67835023 Msa0136040:CDS
TCGCTCCGGGACACGGGACT+TGG 0.469720 1_3:+67835299 Msa0136040:CDS
GGAAGTGCGAGACTGGGGTG+TGG 0.469895 1_3:+67835402 Msa0136040:CDS
CTTTGCGAACCCTTGAGGTA+TGG 0.471055 1_3:+67835015 Msa0136040:CDS
AGAAATAATACAAGAGCAGT+TGG 0.475927 1_3:+67835604 Msa0136040:CDS
TCGAATGCAATCACTTCTCA+TGG 0.484306 1_3:+67835464 Msa0136040:CDS
AGATAGGTGCAATCGGTGTT+CGG 0.488844 1_3:+67835438 Msa0136040:CDS
TATATCCTATTATATCGCTC+CGG 0.489442 1_3:+67835285 Msa0136040:CDS
ACTGCAAGAAAAGCTAGTCT+TGG 0.489810 1_3:+67835073 Msa0136040:CDS
TATTATATCGCTCCGGGACA+CGG 0.491774 1_3:+67835292 Msa0136040:CDS
TTTCCTTCCACTCCAAACAC+TGG 0.495055 1_3:+67834455 Msa0136040:five_prime_UTR
TAAAGAAGAAGAAGATTGCG+AGG 0.502322 1_3:-67834504 None:intergenic
TTCCCAGTGTTTGGAGTGGA+AGG 0.502870 1_3:-67834458 None:intergenic
CAGTCAGAATTGGAACAGAT+TGG 0.505622 1_3:+67835197 Msa0136040:CDS
AGAATAAACAAGAATTGCAT+TGG 0.511747 1_3:-67835783 None:intergenic
TACGGTGTGAAAGCTTGTCC+TGG 0.514005 1_3:+67835377 Msa0136040:CDS
ATATCCTATTATATCGCTCC+GGG 0.515465 1_3:+67835286 Msa0136040:CDS
TGCGAGACTGGGGTGTGGGT+TGG 0.517715 1_3:+67835407 Msa0136040:CDS
CGATATAATAGGATATAAAA+CGG 0.517995 1_3:-67835279 None:intergenic
AGATGGGTAACAGTGCAATT+CGG 0.520833 1_3:-67834583 None:intergenic
CCAGTCTCGCACTTCCGTCC+AGG 0.521959 1_3:-67835395 None:intergenic
TTGCCAACTGTGTATGTAGG+AGG 0.525301 1_3:-67835143 None:intergenic
CTGGACGGAAGTGCGAGACT+GGG 0.527482 1_3:+67835396 Msa0136040:CDS
TAGCACCAAGTCCCGTGTCC+CGG 0.536717 1_3:-67835304 None:intergenic
TCTTGTATTATTTCTTCTGC+GGG 0.538283 1_3:-67835596 None:intergenic
TGGGTTGGAGAAAGAAAGAT+AGG 0.538417 1_3:+67835422 Msa0136040:CDS
TGCAATCACTTCTCATGGGA+TGG 0.538484 1_3:+67835469 Msa0136040:CDS
ATTATATCGCTCCGGGACAC+GGG 0.540311 1_3:+67835293 Msa0136040:CDS
GTATTATTTCTTCTGCGGGA+AGG 0.543520 1_3:-67835592 None:intergenic
TTATGATAACCTGGTTTGGA+AGG 0.544272 1_3:+67835652 Msa0136040:CDS
TAATAGGATATAAAACGGCT+TGG 0.546253 1_3:-67835274 None:intergenic
TGATAACCTGGTTTGGAAGG+AGG 0.556596 1_3:+67835655 Msa0136040:CDS
TCTGTTCCAATTCTGACTGA+GGG 0.560843 1_3:-67835193 None:intergenic
TTGATGAGTGAAAATTGAGA+TGG 0.562615 1_3:-67834600 None:intergenic
GAAGTGCGAGACTGGGGTGT+GGG 0.568019 1_3:+67835403 Msa0136040:CDS
AAGCATCCTCCTTCCAAACC+AGG 0.571828 1_3:-67835661 None:intergenic
AAAGAAGAAGAAGATTGCGA+GGG 0.574689 1_3:-67834503 None:intergenic
GAAAGAAAGATAGGTGCAAT+CGG 0.577631 1_3:+67835431 Msa0136040:CDS
GGATATAAAACGGCTTGGTG+TGG 0.578369 1_3:-67835269 None:intergenic
TTCCTTCCACTCCAAACACT+GGG 0.580776 1_3:+67834456 Msa0136040:five_prime_UTR
ATCTGTTCCAATTCTGACTG+AGG 0.581218 1_3:-67835194 None:intergenic
CACCCTCCTACATACACAGT+TGG 0.584308 1_3:+67835140 Msa0136040:CDS
CAAGTAAAAGCAGAATACAT+AGG 0.584747 1_3:-67835864 None:intergenic
TTAACTATGATTGAACTGGC+AGG 0.588243 1_3:+67835350 Msa0136040:CDS
TGCCAACTGTGTATGTAGGA+GGG 0.592743 1_3:-67835142 None:intergenic
GAGGGCTTTGCGAACCCTTG+AGG 0.595771 1_3:+67835010 Msa0136040:CDS
TGGACGGAAGTGCGAGACTG+GGG 0.596502 1_3:+67835397 Msa0136040:CDS
AGAATTCCCAGTGTTTGGAG+TGG 0.615436 1_3:-67834462 None:intergenic
CGAATGCAATCACTTCTCAT+GGG 0.616033 1_3:+67835465 Msa0136040:CDS
TGATGAGTGAAAATTGAGAT+GGG 0.619726 1_3:-67834599 None:intergenic
GTGTGAAAGCTTGTCCTGGA+CGG 0.630714 1_3:+67835381 Msa0136040:CDS
TCTTTATCAGCAATTCCACA+CGG 0.675103 1_3:-67835536 None:intergenic
TTTAGGCACATTGTACCGTG+TGG 0.676153 1_3:+67835521 Msa0136040:CDS
CTTCACTACACACAACGTGG+AGG 0.719716 1_3:+67835227 Msa0136040:CDS
GAGCTTCACTACACACAACG+TGG 0.727037 1_3:+67835224 Msa0136040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCGAAATTTATTGAATATA+TGG + chr1_3:67834742-67834761 Msa0136040:intron 15.0%
!! ATCGAAATTTATTGAATATA+TGG + chr1_3:67834742-67834761 Msa0136040:intron 15.0%
!! TTACCTGGAAAAATAAAAAA+TGG - chr1_3:67834629-67834648 None:intergenic 20.0%
!! TTAGAATCTATACAAAAAGT+TGG - chr1_3:67834811-67834830 None:intergenic 20.0%
!!! TAATATTTTGCTTCATTTTG+TGG + chr1_3:67834828-67834847 Msa0136040:intron 20.0%
!! CGATATAATAGGATATAAAA+CGG - chr1_3:67835282-67835301 None:intergenic 20.0%
!! TTACCTGGAAAAATAAAAAA+TGG - chr1_3:67834629-67834648 None:intergenic 20.0%
!! TTAGAATCTATACAAAAAGT+TGG - chr1_3:67834811-67834830 None:intergenic 20.0%
!!! TAATATTTTGCTTCATTTTG+TGG + chr1_3:67834828-67834847 Msa0136040:intron 20.0%
!! CGATATAATAGGATATAAAA+CGG - chr1_3:67835282-67835301 None:intergenic 20.0%
!!! GTACCATTTTTTATTTTTCC+AGG + chr1_3:67834623-67834642 Msa0136040:five_prime_UTR 25.0%
!! TTCATTTTGTGGTTACTTAT+GGG + chr1_3:67834839-67834858 Msa0136040:intron 25.0%
!!! TTGATAATGTTATTGTGAAC+AGG + chr1_3:67834983-67835002 Msa0136040:intron 25.0%
! ATCCTGATTTAAACTACTTT+AGG + chr1_3:67835504-67835523 Msa0136040:CDS 25.0%
!! TCATGTTTTGCAAGAATTTT+TGG + chr1_3:67835629-67835648 Msa0136040:CDS 25.0%
!!! AATTTTTGGTTATGATAACC+TGG + chr1_3:67835643-67835662 Msa0136040:CDS 25.0%
! AGAATAAACAAGAATTGCAT+TGG - chr1_3:67835786-67835805 None:intergenic 25.0%
! TATCCATATGATATGTGAAT+TGG + chr1_3:67835835-67835854 Msa0136040:three_prime_UTR 25.0%
! ATCCATATGATATGTGAATT+GGG + chr1_3:67835836-67835855 Msa0136040:three_prime_UTR 25.0%
!!! GTACCATTTTTTATTTTTCC+AGG + chr1_3:67834623-67834642 Msa0136040:five_prime_UTR 25.0%
!! TTCATTTTGTGGTTACTTAT+GGG + chr1_3:67834839-67834858 Msa0136040:intron 25.0%
!!! TTGATAATGTTATTGTGAAC+AGG + chr1_3:67834983-67835002 Msa0136040:intron 25.0%
! ATCCTGATTTAAACTACTTT+AGG + chr1_3:67835504-67835523 Msa0136040:CDS 25.0%
!! TCATGTTTTGCAAGAATTTT+TGG + chr1_3:67835629-67835648 Msa0136040:CDS 25.0%
!!! AATTTTTGGTTATGATAACC+TGG + chr1_3:67835643-67835662 Msa0136040:CDS 25.0%
! AGAATAAACAAGAATTGCAT+TGG - chr1_3:67835786-67835805 None:intergenic 25.0%
! TATCCATATGATATGTGAAT+TGG + chr1_3:67835835-67835854 Msa0136040:three_prime_UTR 25.0%
! ATCCATATGATATGTGAATT+GGG + chr1_3:67835836-67835855 Msa0136040:three_prime_UTR 25.0%
TGATGAGTGAAAATTGAGAT+GGG - chr1_3:67834602-67834621 None:intergenic 30.0%
TTGATGAGTGAAAATTGAGA+TGG - chr1_3:67834603-67834622 None:intergenic 30.0%
CAATGTAGAATTGCATATTG+AGG - chr1_3:67834663-67834682 None:intergenic 30.0%
CTCAATATGCAATTCTACAT+TGG + chr1_3:67834661-67834680 Msa0136040:intron 30.0%
GAAGAAACATTTCAACAAAC+AGG - chr1_3:67834789-67834808 None:intergenic 30.0%
! CTTCATTTTGTGGTTACTTA+TGG + chr1_3:67834838-67834857 Msa0136040:intron 30.0%
! GATTGTATGGATGCAAATTT+TGG + chr1_3:67834868-67834887 Msa0136040:intron 30.0%
TTTCATGTCTCAAATCTAGA+AGG - chr1_3:67834929-67834948 None:intergenic 30.0%
TAATAGGATATAAAACGGCT+TGG - chr1_3:67835277-67835296 None:intergenic 30.0%
TATATCCTATTATATCGCTC+CGG + chr1_3:67835285-67835304 Msa0136040:CDS 30.0%
TGAGTTAACTATGATTGAAC+TGG + chr1_3:67835346-67835365 Msa0136040:CDS 30.0%
TGCCTAAAGTAGTTTAAATC+AGG - chr1_3:67835509-67835528 None:intergenic 30.0%
! TCTTGTATTATTTCTTCTGC+GGG - chr1_3:67835599-67835618 None:intergenic 30.0%
! CTCTTGTATTATTTCTTCTG+CGG - chr1_3:67835600-67835619 None:intergenic 30.0%
AGAAATAATACAAGAGCAGT+TGG + chr1_3:67835604-67835623 Msa0136040:CDS 30.0%
CAAGTAAAAGCAGAATACAT+AGG - chr1_3:67835867-67835886 None:intergenic 30.0%
TGATGAGTGAAAATTGAGAT+GGG - chr1_3:67834602-67834621 None:intergenic 30.0%
TTGATGAGTGAAAATTGAGA+TGG - chr1_3:67834603-67834622 None:intergenic 30.0%
CAATGTAGAATTGCATATTG+AGG - chr1_3:67834663-67834682 None:intergenic 30.0%
CTCAATATGCAATTCTACAT+TGG + chr1_3:67834661-67834680 Msa0136040:intron 30.0%
GAAGAAACATTTCAACAAAC+AGG - chr1_3:67834789-67834808 None:intergenic 30.0%
! CTTCATTTTGTGGTTACTTA+TGG + chr1_3:67834838-67834857 Msa0136040:intron 30.0%
! GATTGTATGGATGCAAATTT+TGG + chr1_3:67834868-67834887 Msa0136040:intron 30.0%
TTTCATGTCTCAAATCTAGA+AGG - chr1_3:67834929-67834948 None:intergenic 30.0%
TAATAGGATATAAAACGGCT+TGG - chr1_3:67835277-67835296 None:intergenic 30.0%
TATATCCTATTATATCGCTC+CGG + chr1_3:67835285-67835304 Msa0136040:CDS 30.0%
TGAGTTAACTATGATTGAAC+TGG + chr1_3:67835346-67835365 Msa0136040:CDS 30.0%
TGCCTAAAGTAGTTTAAATC+AGG - chr1_3:67835509-67835528 None:intergenic 30.0%
! TCTTGTATTATTTCTTCTGC+GGG - chr1_3:67835599-67835618 None:intergenic 30.0%
! CTCTTGTATTATTTCTTCTG+CGG - chr1_3:67835600-67835619 None:intergenic 30.0%
AGAAATAATACAAGAGCAGT+TGG + chr1_3:67835604-67835623 Msa0136040:CDS 30.0%
CAAGTAAAAGCAGAATACAT+AGG - chr1_3:67835867-67835886 None:intergenic 30.0%
AAGATAGAATTCCCAGTGTT+TGG - chr1_3:67834470-67834489 None:intergenic 35.0%
AAAGAAGAAGAAGATTGCGA+GGG - chr1_3:67834506-67834525 None:intergenic 35.0%
TAAAGAAGAAGAAGATTGCG+AGG - chr1_3:67834507-67834526 None:intergenic 35.0%
!! AGATGCAAATGGGTTTTCAA+CGG - chr1_3:67834699-67834718 None:intergenic 35.0%
AGCAGTTACTAGATGCAAAT+GGG - chr1_3:67834709-67834728 None:intergenic 35.0%
AAGCAGTTACTAGATGCAAA+TGG - chr1_3:67834710-67834729 None:intergenic 35.0%
CATTTCAACAAACAGGTACA+GGG - chr1_3:67834782-67834801 None:intergenic 35.0%
ACATTTCAACAAACAGGTAC+AGG - chr1_3:67834783-67834802 None:intergenic 35.0%
!! TATGGATGCAAATTTTGGTG+TGG + chr1_3:67834873-67834892 Msa0136040:intron 35.0%
TTATTGTGAACAGGCAATGA+GGG + chr1_3:67834992-67835011 Msa0136040:intron 35.0%
ATTAATCCCTCAGTCAGAAT+TGG + chr1_3:67835187-67835206 Msa0136040:CDS 35.0%
ATATCCTATTATATCGCTCC+GGG + chr1_3:67835286-67835305 Msa0136040:CDS 35.0%
TTAACTATGATTGAACTGGC+AGG + chr1_3:67835350-67835369 Msa0136040:CDS 35.0%
GAAAGAAAGATAGGTGCAAT+CGG + chr1_3:67835431-67835450 Msa0136040:CDS 35.0%
TCTTTATCAGCAATTCCACA+CGG - chr1_3:67835539-67835558 None:intergenic 35.0%
TTGGTTATGATAACCTGGTT+TGG + chr1_3:67835648-67835667 Msa0136040:CDS 35.0%
!! TTATGATAACCTGGTTTGGA+AGG + chr1_3:67835652-67835671 Msa0136040:CDS 35.0%
TGCCCAATTCACATATCATA+TGG - chr1_3:67835841-67835860 None:intergenic 35.0%
AAGATAGAATTCCCAGTGTT+TGG - chr1_3:67834470-67834489 None:intergenic 35.0%
AAAGAAGAAGAAGATTGCGA+GGG - chr1_3:67834506-67834525 None:intergenic 35.0%
TAAAGAAGAAGAAGATTGCG+AGG - chr1_3:67834507-67834526 None:intergenic 35.0%
!! AGATGCAAATGGGTTTTCAA+CGG - chr1_3:67834699-67834718 None:intergenic 35.0%
AGCAGTTACTAGATGCAAAT+GGG - chr1_3:67834709-67834728 None:intergenic 35.0%
AAGCAGTTACTAGATGCAAA+TGG - chr1_3:67834710-67834729 None:intergenic 35.0%
CATTTCAACAAACAGGTACA+GGG - chr1_3:67834782-67834801 None:intergenic 35.0%
ACATTTCAACAAACAGGTAC+AGG - chr1_3:67834783-67834802 None:intergenic 35.0%
!! TATGGATGCAAATTTTGGTG+TGG + chr1_3:67834873-67834892 Msa0136040:intron 35.0%
TTATTGTGAACAGGCAATGA+GGG + chr1_3:67834992-67835011 Msa0136040:intron 35.0%
ATTAATCCCTCAGTCAGAAT+TGG + chr1_3:67835187-67835206 Msa0136040:CDS 35.0%
ATATCCTATTATATCGCTCC+GGG + chr1_3:67835286-67835305 Msa0136040:CDS 35.0%
TTAACTATGATTGAACTGGC+AGG + chr1_3:67835350-67835369 Msa0136040:CDS 35.0%
GAAAGAAAGATAGGTGCAAT+CGG + chr1_3:67835431-67835450 Msa0136040:CDS 35.0%
TCTTTATCAGCAATTCCACA+CGG - chr1_3:67835539-67835558 None:intergenic 35.0%
TTGGTTATGATAACCTGGTT+TGG + chr1_3:67835648-67835667 Msa0136040:CDS 35.0%
!! TTATGATAACCTGGTTTGGA+AGG + chr1_3:67835652-67835671 Msa0136040:CDS 35.0%
TGCCCAATTCACATATCATA+TGG - chr1_3:67835841-67835860 None:intergenic 35.0%
AGATGGGTAACAGTGCAATT+CGG - chr1_3:67834586-67834605 None:intergenic 40.0%
GAGGTTAAGAAAGACTTACC+TGG - chr1_3:67834644-67834663 None:intergenic 40.0%
TTGTGGTTACTTATGGGTAG+TGG + chr1_3:67834845-67834864 Msa0136040:intron 40.0%
TGTGGTTACTTATGGGTAGT+GGG + chr1_3:67834846-67834865 Msa0136040:intron 40.0%
!! TTATGGGTAGTGGGATTGTA+TGG + chr1_3:67834855-67834874 Msa0136040:intron 40.0%
GTTATTGTGAACAGGCAATG+AGG + chr1_3:67834991-67835010 Msa0136040:intron 40.0%
AACCCTTGAGGTATGGAAAA+TGG + chr1_3:67835022-67835041 Msa0136040:CDS 40.0%
ACCCTTGAGGTATGGAAAAT+GGG + chr1_3:67835023-67835042 Msa0136040:CDS 40.0%
! TCCCATTTTCCATACCTCAA+GGG - chr1_3:67835027-67835046 None:intergenic 40.0%
AATGGGAGTCGTCAACTATT+TGG + chr1_3:67835040-67835059 Msa0136040:CDS 40.0%
! ACTGCAAGAAAAGCTAGTCT+TGG + chr1_3:67835073-67835092 Msa0136040:CDS 40.0%
! CTTTTGCCAACTGTGTATGT+AGG - chr1_3:67835149-67835168 None:intergenic 40.0%
TCTGTTCCAATTCTGACTGA+GGG - chr1_3:67835196-67835215 None:intergenic 40.0%
ATCTGTTCCAATTCTGACTG+AGG - chr1_3:67835197-67835216 None:intergenic 40.0%
CAGTCAGAATTGGAACAGAT+TGG + chr1_3:67835197-67835216 Msa0136040:CDS 40.0%
GGAGGAGACATTACATTTCA+TGG + chr1_3:67835245-67835264 Msa0136040:CDS 40.0%
ATTGAACTGGCAGGTCTATA+CGG + chr1_3:67835359-67835378 Msa0136040:CDS 40.0%
! TGGGTTGGAGAAAGAAAGAT+AGG + chr1_3:67835422-67835441 Msa0136040:CDS 40.0%
TCGAATGCAATCACTTCTCA+TGG + chr1_3:67835464-67835483 Msa0136040:CDS 40.0%
CGAATGCAATCACTTCTCAT+GGG + chr1_3:67835465-67835484 Msa0136040:CDS 40.0%
! GTATTATTTCTTCTGCGGGA+AGG - chr1_3:67835595-67835614 None:intergenic 40.0%
AGATGGGTAACAGTGCAATT+CGG - chr1_3:67834586-67834605 None:intergenic 40.0%
GAGGTTAAGAAAGACTTACC+TGG - chr1_3:67834644-67834663 None:intergenic 40.0%
TTGTGGTTACTTATGGGTAG+TGG + chr1_3:67834845-67834864 Msa0136040:intron 40.0%
TGTGGTTACTTATGGGTAGT+GGG + chr1_3:67834846-67834865 Msa0136040:intron 40.0%
!! TTATGGGTAGTGGGATTGTA+TGG + chr1_3:67834855-67834874 Msa0136040:intron 40.0%
GTTATTGTGAACAGGCAATG+AGG + chr1_3:67834991-67835010 Msa0136040:intron 40.0%
AACCCTTGAGGTATGGAAAA+TGG + chr1_3:67835022-67835041 Msa0136040:CDS 40.0%
ACCCTTGAGGTATGGAAAAT+GGG + chr1_3:67835023-67835042 Msa0136040:CDS 40.0%
! TCCCATTTTCCATACCTCAA+GGG - chr1_3:67835027-67835046 None:intergenic 40.0%
AATGGGAGTCGTCAACTATT+TGG + chr1_3:67835040-67835059 Msa0136040:CDS 40.0%
! ACTGCAAGAAAAGCTAGTCT+TGG + chr1_3:67835073-67835092 Msa0136040:CDS 40.0%
! CTTTTGCCAACTGTGTATGT+AGG - chr1_3:67835149-67835168 None:intergenic 40.0%
TCTGTTCCAATTCTGACTGA+GGG - chr1_3:67835196-67835215 None:intergenic 40.0%
ATCTGTTCCAATTCTGACTG+AGG - chr1_3:67835197-67835216 None:intergenic 40.0%
CAGTCAGAATTGGAACAGAT+TGG + chr1_3:67835197-67835216 Msa0136040:CDS 40.0%
GGAGGAGACATTACATTTCA+TGG + chr1_3:67835245-67835264 Msa0136040:CDS 40.0%
ATTGAACTGGCAGGTCTATA+CGG + chr1_3:67835359-67835378 Msa0136040:CDS 40.0%
! TGGGTTGGAGAAAGAAAGAT+AGG + chr1_3:67835422-67835441 Msa0136040:CDS 40.0%
TCGAATGCAATCACTTCTCA+TGG + chr1_3:67835464-67835483 Msa0136040:CDS 40.0%
CGAATGCAATCACTTCTCAT+GGG + chr1_3:67835465-67835484 Msa0136040:CDS 40.0%
! GTATTATTTCTTCTGCGGGA+AGG - chr1_3:67835595-67835614 None:intergenic 40.0%
TTTCCTTCCACTCCAAACAC+TGG + chr1_3:67834455-67834474 Msa0136040:five_prime_UTR 45.0%
TTCCTTCCACTCCAAACACT+GGG + chr1_3:67834456-67834475 Msa0136040:five_prime_UTR 45.0%
AGAATTCCCAGTGTTTGGAG+TGG - chr1_3:67834465-67834484 None:intergenic 45.0%
AGATTGCGAGGGAATGGAAT+TGG - chr1_3:67834495-67834514 None:intergenic 45.0%
AGAAGAAGATTGCGAGGGAA+TGG - chr1_3:67834501-67834520 None:intergenic 45.0%
! AAACAGGTACAGGGCATTCA+CGG - chr1_3:67834773-67834792 None:intergenic 45.0%
! CTCCCATTTTCCATACCTCA+AGG - chr1_3:67835028-67835047 None:intergenic 45.0%
TGCCAACTGTGTATGTAGGA+GGG - chr1_3:67835145-67835164 None:intergenic 45.0%
TTGCCAACTGTGTATGTAGG+AGG - chr1_3:67835146-67835165 None:intergenic 45.0%
!! GGATATAAAACGGCTTGGTG+TGG - chr1_3:67835272-67835291 None:intergenic 45.0%
TATTATATCGCTCCGGGACA+CGG + chr1_3:67835292-67835311 Msa0136040:CDS 45.0%
! AGATAGGTGCAATCGGTGTT+CGG + chr1_3:67835438-67835457 Msa0136040:CDS 45.0%
TGCAATCACTTCTCATGGGA+TGG + chr1_3:67835469-67835488 Msa0136040:CDS 45.0%
TTTAGGCACATTGTACCGTG+TGG + chr1_3:67835521-67835540 Msa0136040:CDS 45.0%
!! TGATAACCTGGTTTGGAAGG+AGG + chr1_3:67835655-67835674 Msa0136040:CDS 45.0%
TTTCCTTCCACTCCAAACAC+TGG + chr1_3:67834455-67834474 Msa0136040:five_prime_UTR 45.0%
TTCCTTCCACTCCAAACACT+GGG + chr1_3:67834456-67834475 Msa0136040:five_prime_UTR 45.0%
AGAATTCCCAGTGTTTGGAG+TGG - chr1_3:67834465-67834484 None:intergenic 45.0%
AGATTGCGAGGGAATGGAAT+TGG - chr1_3:67834495-67834514 None:intergenic 45.0%
AGAAGAAGATTGCGAGGGAA+TGG - chr1_3:67834501-67834520 None:intergenic 45.0%
! AAACAGGTACAGGGCATTCA+CGG - chr1_3:67834773-67834792 None:intergenic 45.0%
! CTCCCATTTTCCATACCTCA+AGG - chr1_3:67835028-67835047 None:intergenic 45.0%
TGCCAACTGTGTATGTAGGA+GGG - chr1_3:67835145-67835164 None:intergenic 45.0%
TTGCCAACTGTGTATGTAGG+AGG - chr1_3:67835146-67835165 None:intergenic 45.0%
!! GGATATAAAACGGCTTGGTG+TGG - chr1_3:67835272-67835291 None:intergenic 45.0%
TATTATATCGCTCCGGGACA+CGG + chr1_3:67835292-67835311 Msa0136040:CDS 45.0%
! AGATAGGTGCAATCGGTGTT+CGG + chr1_3:67835438-67835457 Msa0136040:CDS 45.0%
TGCAATCACTTCTCATGGGA+TGG + chr1_3:67835469-67835488 Msa0136040:CDS 45.0%
TTTAGGCACATTGTACCGTG+TGG + chr1_3:67835521-67835540 Msa0136040:CDS 45.0%
!! TGATAACCTGGTTTGGAAGG+AGG + chr1_3:67835655-67835674 Msa0136040:CDS 45.0%
! TTCCCAGTGTTTGGAGTGGA+AGG - chr1_3:67834461-67834480 None:intergenic 50.0%
CTTTGCGAACCCTTGAGGTA+TGG + chr1_3:67835015-67835034 Msa0136040:CDS 50.0%
CACCCTCCTACATACACAGT+TGG + chr1_3:67835140-67835159 Msa0136040:CDS 50.0%
GAGCTTCACTACACACAACG+TGG + chr1_3:67835224-67835243 Msa0136040:CDS 50.0%
CTTCACTACACACAACGTGG+AGG + chr1_3:67835227-67835246 Msa0136040:CDS 50.0%
GTGTCCCGGAGCGATATAAT+AGG - chr1_3:67835293-67835312 None:intergenic 50.0%
ATTATATCGCTCCGGGACAC+GGG + chr1_3:67835293-67835312 Msa0136040:CDS 50.0%
TACGGTGTGAAAGCTTGTCC+TGG + chr1_3:67835377-67835396 Msa0136040:CDS 50.0%
GTGTGAAAGCTTGTCCTGGA+CGG + chr1_3:67835381-67835400 Msa0136040:CDS 50.0%
AAGCATCCTCCTTCCAAACC+AGG - chr1_3:67835664-67835683 None:intergenic 50.0%
! TTCCCAGTGTTTGGAGTGGA+AGG - chr1_3:67834461-67834480 None:intergenic 50.0%
CTTTGCGAACCCTTGAGGTA+TGG + chr1_3:67835015-67835034 Msa0136040:CDS 50.0%
CACCCTCCTACATACACAGT+TGG + chr1_3:67835140-67835159 Msa0136040:CDS 50.0%
GAGCTTCACTACACACAACG+TGG + chr1_3:67835224-67835243 Msa0136040:CDS 50.0%
CTTCACTACACACAACGTGG+AGG + chr1_3:67835227-67835246 Msa0136040:CDS 50.0%
GTGTCCCGGAGCGATATAAT+AGG - chr1_3:67835293-67835312 None:intergenic 50.0%
ATTATATCGCTCCGGGACAC+GGG + chr1_3:67835293-67835312 Msa0136040:CDS 50.0%
TACGGTGTGAAAGCTTGTCC+TGG + chr1_3:67835377-67835396 Msa0136040:CDS 50.0%
GTGTGAAAGCTTGTCCTGGA+CGG + chr1_3:67835381-67835400 Msa0136040:CDS 50.0%
AAGCATCCTCCTTCCAAACC+AGG - chr1_3:67835664-67835683 None:intergenic 50.0%
GAGGGCTTTGCGAACCCTTG+AGG + chr1_3:67835010-67835029 Msa0136040:CDS 60.0%
TAGCACCAAGTCCCGTGTCC+CGG - chr1_3:67835307-67835326 None:intergenic 60.0%
! CTGGACGGAAGTGCGAGACT+GGG + chr1_3:67835396-67835415 Msa0136040:CDS 60.0%
! TGGACGGAAGTGCGAGACTG+GGG + chr1_3:67835397-67835416 Msa0136040:CDS 60.0%
GAAGTGCGAGACTGGGGTGT+GGG + chr1_3:67835403-67835422 Msa0136040:CDS 60.0%
GAGGGCTTTGCGAACCCTTG+AGG + chr1_3:67835010-67835029 Msa0136040:CDS 60.0%
TAGCACCAAGTCCCGTGTCC+CGG - chr1_3:67835307-67835326 None:intergenic 60.0%
! CTGGACGGAAGTGCGAGACT+GGG + chr1_3:67835396-67835415 Msa0136040:CDS 60.0%
! TGGACGGAAGTGCGAGACTG+GGG + chr1_3:67835397-67835416 Msa0136040:CDS 60.0%
GAAGTGCGAGACTGGGGTGT+GGG + chr1_3:67835403-67835422 Msa0136040:CDS 60.0%
CCAGTCTCGCACTTCCGTCC+AGG - chr1_3:67835398-67835417 None:intergenic 65.0%
! CCTGGACGGAAGTGCGAGAC+TGG + chr1_3:67835395-67835414 Msa0136040:CDS 65.0%
! GGAAGTGCGAGACTGGGGTG+TGG + chr1_3:67835402-67835421 Msa0136040:CDS 65.0%
TGCGAGACTGGGGTGTGGGT+TGG + chr1_3:67835407-67835426 Msa0136040:CDS 65.0%
CCAGTCTCGCACTTCCGTCC+AGG - chr1_3:67835398-67835417 None:intergenic 65.0%
! CCTGGACGGAAGTGCGAGAC+TGG + chr1_3:67835395-67835414 Msa0136040:CDS 65.0%
! GGAAGTGCGAGACTGGGGTG+TGG + chr1_3:67835402-67835421 Msa0136040:CDS 65.0%
TGCGAGACTGGGGTGTGGGT+TGG + chr1_3:67835407-67835426 Msa0136040:CDS 65.0%
TCGCTCCGGGACACGGGACT+TGG + chr1_3:67835299-67835318 Msa0136040:CDS 70.0%
TCGCTCCGGGACACGGGACT+TGG + chr1_3:67835299-67835318 Msa0136040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67834453 67835981 67834453 ID=Msa0136040;Name=Msa0136040
chr1_3 mRNA 67834453 67835981 67834453 ID=Msa0136040-mRNA-1;Parent=Msa0136040;Name=Msa0136040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=192|0|0.5|1|0|0.5|2|266|235
chr1_3 exon 67834453 67834644 67834453 ID=Msa0136040-mRNA-1:exon:23338;Parent=Msa0136040-mRNA-1
chr1_3 exon 67835008 67835981 67835008 ID=Msa0136040-mRNA-1:exon:23339;Parent=Msa0136040-mRNA-1
chr1_3 five_prime_UTR 67834453 67834644 67834453 ID=Msa0136040-mRNA-1:five_prime_utr;Parent=Msa0136040-mRNA-1
chr1_3 CDS 67835008 67835715 67835008 ID=Msa0136040-mRNA-1:cds;Parent=Msa0136040-mRNA-1
chr1_3 three_prime_UTR 67835716 67835981 67835716 ID=Msa0136040-mRNA-1:three_prime_utr;Parent=Msa0136040-mRNA-1
Gene Sequence

>Msa0136040

ATGAGGGCTTTGCGAACCCTTGAGGTATGGAAAATGGGAGTCGTCAACTATTTGGATGCGTTAAAACTGCAAGAAAAGCTAGTCTTGGATAGAAAATCTCATAAGAGATGTGATACTCTTCTATCTTTGCAACACCCTCCTACATACACAGTTGGCAAAAGACAAACTGTTCATAATTTATTAATCCCTCAGTCAGAATTGGAACAGATTGGCGCTGAGCTTCACTACACACAACGTGGAGGAGACATTACATTTCATGGTCCACACCAAGCCGTTTTATATCCTATTATATCGCTCCGGGACACGGGACTTGGTGCTAGAAAATTTGTAGAAAAAATTGAGTTAACTATGATTGAACTGGCAGGTCTATACGGTGTGAAAGCTTGTCCTGGACGGAAGTGCGAGACTGGGGTGTGGGTTGGAGAAAGAAAGATAGGTGCAATCGGTGTTCGGATATCGAATGCAATCACTTCTCATGGGATGGCGTTTAACATTGATCCTGATTTAAACTACTTTAGGCACATTGTACCGTGTGGAATTGCTGATAAAGAAGTGACATCTTTGAGAAGAGAGACAGATTTTGACCTTCCCGCAGAAGAAATAATACAAGAGCAGTTGGTTTCATGTTTTGCAAGAATTTTTGGTTATGATAACCTGGTTTGGAAGGAGGATGCTTCTATATTATCTGATAAAAATGAAACTGAATGA

Protein sequence

>Msa0136040

MRALRTLEVWKMGVVNYLDALKLQEKLVLDRKSHKRCDTLLSLQHPPTYTVGKRQTVHNLLIPQSELEQIGAELHYTQRGGDITFHGPHQAVLYPIISLRDTGLGARKFVEKIELTMIELAGLYGVKACPGRKCETGVWVGERKIGAIGVRISNAITSHGMAFNIDPDLNYFRHIVPCGIADKEVTSLRRETDFDLPAEEIIQEQLVSCFARIFGYDNLVWKEDASILSDKNETE*