AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063180 MtrunA17_Chr7g0242351 97.582 455 11 0 1 455 1 455 0.0 896
Msa1063180 MtrunA17_Chr5g0429881 70.398 402 112 4 37 435 29 426 0.0 513
Msa1063180 MtrunA17_Chr4g0006841 79.511 327 66 1 130 455 2 328 7.18e-169 478
Msa1063180 MtrunA17_Chr2g0334171 48.958 384 178 5 62 435 63 438 1.78e-117 351
Msa1063180 MtrunA17_Chr3g0120501 45.139 432 208 7 14 434 16 429 2.53e-110 333
Msa1063180 MtrunA17_Chr4g0006831 67.544 114 34 2 8 120 9 120 1.44e-38 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063180 AT3G51860.1 70.721 444 113 6 10 441 6 444 0.0 575
Msa1063180 AT2G38170.1 67.735 437 136 3 10 441 7 443 0.0 574
Msa1063180 AT2G38170.3 68.445 431 131 3 10 435 7 437 0.0 571
Msa1063180 AT3G51860.2 71.324 408 101 5 10 405 6 409 0.0 522
Msa1063180 AT5G01490.2 58.636 440 173 3 13 445 14 451 1.95e-173 494
Msa1063180 AT5G01490.1 58.636 440 173 3 13 445 14 451 1.95e-173 494
Msa1063180 AT2G38170.2 67.733 344 106 3 10 348 7 350 1.93e-152 439
Msa1063180 AT1G55730.1 47.018 436 221 4 11 438 7 440 2.86e-126 374
Msa1063180 AT1G55730.2 47.018 436 221 4 11 438 7 440 2.86e-126 374
Msa1063180 AT3G13320.1 51.064 376 180 2 64 436 64 438 1.06e-124 370
Msa1063180 AT1G55720.2 46.973 413 209 3 25 436 44 447 7.14e-121 360
Msa1063180 AT1G55720.1 46.973 413 209 3 25 436 44 447 1.75e-120 360

Find 184 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTTGCTACTTTGTTAT+TGG 0.090694 7_2:-54737161 Msa1063180:CDS
TTACTTAGTTATTTATATTT+TGG 0.110164 7_2:-54736171 Msa1063180:three_prime_UTR
ATGCTGCCATCCTTCATTTA+TGG 0.132671 7_2:+54736807 None:intergenic
TCCATCTCTCTTTCGTTTAC+AGG 0.165951 7_2:-54735112 Msa1063180:three_prime_UTR
CATTGCATTCTGCAATTAAT+TGG 0.172443 7_2:+54735283 None:intergenic
TATCTATTATTTAATTTATT+GGG 0.172848 7_2:-54735898 Msa1063180:three_prime_UTR
CAGAAGAAACTTATTTAAAA+TGG 0.184683 7_2:-54736465 Msa1063180:three_prime_UTR
ATATCTATTATTTAATTTAT+TGG 0.186522 7_2:-54735899 Msa1063180:three_prime_UTR
AAGAGGCTGTGATTGGATTT+TGG 0.204843 7_2:-54738379 Msa1063180:CDS
TGCATTGGATATCAAATAAA+TGG 0.228234 7_2:-54736583 Msa1063180:three_prime_UTR
AGATTCAATACATTGGTTAT+TGG 0.229540 7_2:-54736764 Msa1063180:three_prime_UTR
CAGTGTTTGTTTGGATTATT+AGG 0.241571 7_2:+54735505 None:intergenic
TTTATGGAAGGAACTAAAAT+AGG 0.246433 7_2:+54736823 None:intergenic
AGTCACAGGCTTCACTTTAC+AGG 0.262749 7_2:-54737336 Msa1063180:intron
CTTACTTGATCTTTCAACTA+TGG 0.265436 7_2:-54738566 Msa1063180:CDS
ATTAAAATCGTATATAAAAT+AGG 0.268548 7_2:-54735600 Msa1063180:three_prime_UTR
AGTAGCAAAGTAGGAGAATA+AGG 0.270564 7_2:+54737171 None:intergenic
TGGAATTGTTCTCATGAGTT+TGG 0.279459 7_2:-54736563 Msa1063180:three_prime_UTR
CGAAGGATTGATTTATCTTT+CGG 0.283083 7_2:+54735572 None:intergenic
GTTAAGTTCTACATCATGAT+AGG 0.291557 7_2:-54736340 Msa1063180:three_prime_UTR
TGTGATTGTTGCTTGGATAA+TGG 0.292550 7_2:-54737420 Msa1063180:CDS
TGCAGAATGCAATGCTTTAT+CGG 0.293855 7_2:-54735274 Msa1063180:three_prime_UTR
CTAGAATTCGCTTAAATTGT+AGG 0.294282 7_2:+54735857 None:intergenic
AATACTTGACAACAGCAATT+TGG 0.296161 7_2:+54739244 None:intergenic
AGTTCATCTAATATAACATT+TGG 0.297714 7_2:+54736024 None:intergenic
ATGTCCATGTCTTGCTTCCT+TGG 0.298757 7_2:+54740508 None:intergenic
GTGATTGTTGCTTGGATAAT+GGG 0.310836 7_2:-54737419 Msa1063180:CDS
AGAAGAACAACCATGGCTTT+TGG 0.313403 7_2:-54740555 Msa1063180:CDS
ATTGAATCTGTATTTGAGTT+TGG 0.319024 7_2:+54736778 None:intergenic
GCTTCCTTGGTCAAGACCTT+TGG 0.324710 7_2:+54740521 None:intergenic
CCATGCATGCAGTGTTTGTT+TGG 0.325912 7_2:+54735496 None:intergenic
TGAGACAGGTTCTCTTGCTT+TGG 0.332421 7_2:-54737366 Msa1063180:CDS
GTGATGTTATTAACACCATT+TGG 0.333001 7_2:+54736987 None:intergenic
TCAAATCTTCTTCTTGTGCT+TGG 0.344002 7_2:-54739201 Msa1063180:CDS
CTCTGTGTGTGATTGTTGCT+TGG 0.344128 7_2:-54737427 Msa1063180:CDS
AAATCATCGTCGTCGTCGTT+AGG 0.345185 7_2:+54735393 None:intergenic
AACATCCAAGAGGTTATTCT+TGG 0.346417 7_2:-54740377 Msa1063180:CDS
TTATTGCAAGCTTTGTGAAT+AGG 0.347197 7_2:-54736683 Msa1063180:three_prime_UTR
AAGCTTGCAATAAAATTTCA+TGG 0.350563 7_2:+54736693 None:intergenic
GTACAACTAACCTAAACTTT+AGG 0.357721 7_2:+54735930 None:intergenic
AGGTTCGATGTGCTTCGCTT+AGG 0.358508 7_2:-54740412 Msa1063180:CDS
TACTCAAATTTCAATGTTTG+CGG 0.360322 7_2:-54737729 Msa1063180:intron
GGAATTGTTCTCATGAGTTT+GGG 0.364979 7_2:-54736562 Msa1063180:three_prime_UTR
TTGGATAATGGGTGTGAAAA+TGG 0.371356 7_2:-54737408 Msa1063180:CDS
TAATTAGATGGTCGTGCTTA+AGG 0.371648 7_2:-54736133 Msa1063180:three_prime_UTR
AAGTGACACAACCATTATAA+TGG 0.375964 7_2:+54735074 None:intergenic
ACAAAGATATGCCACGAATA+AGG 0.378296 7_2:+54735797 None:intergenic
TGATGTTATTAACACCATTT+GGG 0.378729 7_2:+54736988 None:intergenic
TAGGATTTAAAAGAATCATT+TGG 0.380999 7_2:+54735949 None:intergenic
GGTTCGATGTGCTTCGCTTA+GGG 0.383144 7_2:-54740411 Msa1063180:CDS
TGCTTCTCCCGTGAGAGTTT+CGG 0.389042 7_2:-54735544 Msa1063180:three_prime_UTR
AGTAGCTTTGGTTGGTTGGC+TGG 0.395588 7_2:-54738356 Msa1063180:CDS
TTCAGTTGAAATATGATTTG+TGG 0.396911 7_2:+54736400 None:intergenic
ATATGTGGTTGATACAATTC+AGG 0.397274 7_2:-54738303 Msa1063180:intron
CCATCTCTCTTTCGTTTACA+GGG 0.397877 7_2:-54735111 Msa1063180:three_prime_UTR
ATAACATAGACTTACCTATT+AGG 0.398912 7_2:+54736932 None:intergenic
TCAGCTGCATTGCCAACTAT+TGG 0.400365 7_2:+54737972 None:intergenic
GTTCATCTAATATAACATTT+GGG 0.410130 7_2:+54736025 None:intergenic
GCCTTCTTCACTGGTCCTAC+AGG 0.414576 7_2:-54739445 Msa1063180:intron
TTGGAGTAGCTTTGGTTGGT+TGG 0.422886 7_2:-54738360 Msa1063180:CDS
CCTGCCCTCATCCATTATAA+TGG 0.428998 7_2:-54735085 Msa1063180:three_prime_UTR
AACAGGATGCATCAGATTCA+TGG 0.429074 7_2:-54738031 Msa1063180:intron
GCCATTGTTGCTCACTACCT+TGG 0.429316 7_2:-54740317 Msa1063180:CDS
AAAAGATTAAGCAATTCAAA+AGG 0.433154 7_2:+54736518 None:intergenic
AAGGTGAAGGTGAGAACAAT+GGG 0.433388 7_2:-54738409 Msa1063180:CDS
CATTTCCTTAGGTGTTGCAT+TGG 0.434861 7_2:-54737759 Msa1063180:CDS
CTTTGTTGAAATATGTCATC+AGG 0.435807 7_2:+54735694 None:intergenic
GGATATCAGTATAGCGCTGC+TGG 0.438655 7_2:+54735352 None:intergenic
TTGATCGAGATCGGCAATGA+AGG 0.439181 7_2:+54735458 None:intergenic
ATTTCCTTAGGTGTTGCATT+GGG 0.439331 7_2:-54737758 Msa1063180:CDS
TTAAATTTCAACCTTATTCG+TGG 0.439507 7_2:-54735808 Msa1063180:three_prime_UTR
TGACTGCAGGACATTTCCTT+AGG 0.447939 7_2:-54737770 Msa1063180:intron
GAATTCACTAATGCTGCTAT+TGG 0.449882 7_2:-54738712 Msa1063180:CDS
AATCATCGTCGTCGTCGTTA+GGG 0.451508 7_2:+54735394 None:intergenic
ATCTATTATTTAATTTATTG+GGG 0.453576 7_2:-54735897 Msa1063180:three_prime_UTR
GCAGAAGAAGAGGCTGTGAT+TGG 0.458711 7_2:-54738386 Msa1063180:CDS
TTAGTTCCTTCCATAAATGA+AGG 0.459606 7_2:-54736817 Msa1063180:three_prime_UTR
GTTGCTCACTACCTTGGCTT+AGG 0.459775 7_2:-54740311 Msa1063180:CDS
TGCTTTGTTATCTGAATATG+TGG 0.461322 7_2:-54738318 Msa1063180:CDS
AGACAAATTGCCTTCTTCAC+TGG 0.464133 7_2:-54739454 Msa1063180:CDS
TTAACATAGTATAATAATAG+AGG 0.466255 7_2:+54735738 None:intergenic
TAGAATTCGCTTAAATTGTA+GGG 0.466847 7_2:+54735858 None:intergenic
CTTGGAACCTCTCTACTTTG+TGG 0.472185 7_2:-54739183 Msa1063180:CDS
CCCTTCAATCATATACCAAT+AGG 0.475019 7_2:+54736626 None:intergenic
ACAATGGCAGCAGGAATGGC+AGG 0.475255 7_2:+54740332 None:intergenic
GACATGGACATGGCCGGAGC+CGG 0.476259 7_2:-54740496 Msa1063180:CDS
TGTATTATCGACTCAAGCTC+TGG 0.480227 7_2:+54735186 None:intergenic
TGCTTCGCTTAGGGTCGTGT+TGG 0.482780 7_2:-54740402 Msa1063180:CDS
TGTTATGCGCAGTCCGGCTC+CGG 0.483828 7_2:+54740483 None:intergenic
AACTTCAACCTCCTTGAGAC+AGG 0.484883 7_2:-54737380 Msa1063180:CDS
AGCAACAATGGCAGCAGGAA+TGG 0.498904 7_2:+54740328 None:intergenic
TCCTATTGGTATATGATTGA+AGG 0.499007 7_2:-54736627 Msa1063180:three_prime_UTR
ATCTGCTAGCATTGTGATGT+TGG 0.501905 7_2:-54738601 Msa1063180:CDS
TACTGATATCCTACAGAAAG+TGG 0.502665 7_2:-54735340 Msa1063180:three_prime_UTR
ACAGGATGCATCAGATTCAT+GGG 0.502893 7_2:-54738030 Msa1063180:intron
TGAATAGTAATGGAAGCAAA+TGG 0.506072 7_2:+54738679 None:intergenic
CTTACGTCTTCAACTACATC+GGG 0.506959 7_2:-54735054 Msa1063180:three_prime_UTR
CCAAACAAACACTGCATGCA+TGG 0.509004 7_2:-54735496 Msa1063180:three_prime_UTR
GCTTTGGCAATTATAGTCAC+AGG 0.509232 7_2:-54737350 Msa1063180:CDS
GATAATAACCGAAACTCTCA+CGG 0.510600 7_2:+54735536 None:intergenic
AGTACTTGTCTCACTTGCTA+TGG 0.511694 7_2:+54740650 None:intergenic
AAAAGCAATCACAAATAAGC+AGG 0.512607 7_2:-54735651 Msa1063180:three_prime_UTR
TTAAGTTCTACATCATGATA+GGG 0.513423 7_2:-54736339 Msa1063180:three_prime_UTR
CAATAACAAAGTAGCAAAGT+AGG 0.513940 7_2:+54737162 None:intergenic
AAGAAGAAGATTTGAAAGGA+TGG 0.514798 7_2:+54739209 None:intergenic
ATAATCTTGCTACCAATAGT+TGG 0.517828 7_2:-54737984 Msa1063180:CDS
TGATCATACTCTTGTGTCCA+AGG 0.518591 7_2:-54740432 Msa1063180:CDS
ACCTGTAGGACCAGTGAAGA+AGG 0.520142 7_2:+54739444 None:intergenic
CAGTATAGCGCTGCTGGGAT+CGG 0.522505 7_2:+54735358 None:intergenic
TGTGGTGGCATTGCTAACCT+TGG 0.523361 7_2:-54739165 Msa1063180:CDS
CCTATTGGTATATGATTGAA+GGG 0.526643 7_2:-54736626 Msa1063180:three_prime_UTR
GGCAATGCAGCTGAACATGC+AGG 0.532772 7_2:-54737963 Msa1063180:CDS
GAAGGCTCTACTGTGAGTGC+AGG 0.535270 7_2:+54738639 None:intergenic
ACGACACGAGCATAATCAAT+GGG 0.535487 7_2:+54735159 None:intergenic
AACGACACGAGCATAATCAA+TGG 0.536313 7_2:+54735158 None:intergenic
AAGACATGTTATGCGCAGTC+CGG 0.537793 7_2:+54740477 None:intergenic
GCTGGGATCGGTGCAACTTG+AGG 0.540676 7_2:+54735370 None:intergenic
TAAATAATAGATATAAACTA+AGG 0.540725 7_2:+54735908 None:intergenic
TGGTACCAAGAATAACCTCT+TGG 0.544158 7_2:+54740372 None:intergenic
AAAGATTAAGCAATTCAAAA+GGG 0.547371 7_2:+54736519 None:intergenic
TTTCTGATCGTGCATTGCAT+TGG 0.547897 7_2:-54736598 Msa1063180:three_prime_UTR
CACAACCATTATAATGGATG+AGG 0.548866 7_2:+54735080 None:intergenic
ATCGGAAGTTGCGAATCAAT+CGG 0.550647 7_2:+54735761 None:intergenic
TAGTGAGCAACAATGGCAGC+AGG 0.554698 7_2:+54740323 None:intergenic
AAGCAAGACATGGACATGGC+CGG 0.556755 7_2:-54740502 Msa1063180:CDS
CCATTATAATGGATGAGGGC+AGG 0.558316 7_2:+54735085 None:intergenic
AGACTTCCTCCACTTTCTGT+AGG 0.561546 7_2:+54735331 None:intergenic
TGCGAATCAATCGGAATCAT+CGG 0.563889 7_2:+54735770 None:intergenic
ATGATCAGATTTCTTGCGCA+AGG 0.565719 7_2:+54740448 None:intergenic
TTTCGCTTTCAAGAACAAGC+TGG 0.567168 7_2:-54737931 Msa1063180:intron
GGTACTTCTCACTACTTGAA+AGG 0.569583 7_2:-54737194 Msa1063180:CDS
TTCCTTCCATAAATGAAGGA+TGG 0.570651 7_2:-54736813 Msa1063180:three_prime_UTR
AACTTACTCTTCCTAAGCCA+AGG 0.571467 7_2:+54740300 None:intergenic
GGAACCTCTCTACTTTGTGG+TGG 0.572641 7_2:-54739180 Msa1063180:CDS
AGGAATGGCAGGGAAGAGAA+TGG 0.574003 7_2:+54740343 None:intergenic
AGAACCCAATGCAACACCTA+AGG 0.575365 7_2:+54737754 None:intergenic
GACATCGAGTTGATCGAGAT+CGG 0.576244 7_2:+54735449 None:intergenic
GAACAATGGGGCAGAAGAAG+AGG 0.579943 7_2:-54738396 Msa1063180:CDS
AAGCTCACACGTTCAGCAAG+TGG 0.581166 7_2:+54739626 None:intergenic
TGCCATCCTTCATTTATGGA+AGG 0.582054 7_2:+54736811 None:intergenic
CCCTGTAAACGAAAGAGAGA+TGG 0.583934 7_2:+54735111 None:intergenic
GCACTGAATGTGAATAGTAA+TGG 0.584551 7_2:+54738669 None:intergenic
TTTGTCACATCCAGATAGGA+GGG 0.584721 7_2:-54736736 Msa1063180:three_prime_UTR
AAGCAAGAGAACCTGTCTCA+AGG 0.585227 7_2:+54737369 None:intergenic
AAGCGAAGCACATCGAACCT+TGG 0.585577 7_2:+54740415 None:intergenic
GCCAAGGTAGTGAGCAACAA+TGG 0.587406 7_2:+54740316 None:intergenic
GCACAAGAAGAAGATTTGAA+AGG 0.589627 7_2:+54739205 None:intergenic
AGGGAAGAGAATGGACAGCT+TGG 0.590813 7_2:+54740352 None:intergenic
CAAATACAGATTCAATACAT+TGG 0.591838 7_2:-54736771 Msa1063180:three_prime_UTR
GAAGGTGAAGGTGAGAACAA+TGG 0.592150 7_2:-54738410 Msa1063180:CDS
ATAGTATAATAATAGAGGAT+CGG 0.594029 7_2:+54735743 None:intergenic
TTACCATTCTCCAAAAGCCA+TGG 0.602438 7_2:+54740545 None:intergenic
GGACTTCTTAATGCAACATG+TGG 0.603864 7_2:-54739312 Msa1063180:CDS
GATATCAGTATAGCGCTGCT+GGG 0.603979 7_2:+54735353 None:intergenic
CATCTCTCTTTCGTTTACAG+GGG 0.611057 7_2:-54735110 Msa1063180:three_prime_UTR
TTTGGAGAATGGTAATCCAA+AGG 0.613189 7_2:-54740537 Msa1063180:CDS
GATCTTGACAAGTAGAGTGA+AGG 0.614792 7_2:+54738621 None:intergenic
AAGCTCAGTATGAAAACCCA+TGG 0.614856 7_2:+54739662 None:intergenic
TCTATTATTTAATTTATTGG+GGG 0.617480 7_2:-54735896 Msa1063180:three_prime_UTR
AATCAATCGGAATCATCGGA+TGG 0.619953 7_2:+54735774 None:intergenic
ACTTACGTCTTCAACTACAT+CGG 0.620932 7_2:-54735055 Msa1063180:three_prime_UTR
TTGACCAAGGAAGCAAGACA+TGG 0.622225 7_2:-54740512 Msa1063180:CDS
TGGCATTGCTAACCTTGGAG+TGG 0.622942 7_2:-54739160 Msa1063180:CDS
ACGGGAGAAGCAACAATCGA+AGG 0.624628 7_2:+54735555 None:intergenic
GACTTCTTAATGCAACATGT+GGG 0.630828 7_2:-54739311 Msa1063180:CDS
ATAATAACCGAAACTCTCAC+GGG 0.633313 7_2:+54735537 None:intergenic
ATTGTTGAACAGGAAGGTGA+AGG 0.640185 7_2:-54738422 Msa1063180:intron
CAGGATGCATCAGATTCATG+GGG 0.640272 7_2:-54738029 Msa1063180:CDS
CAATGGCAGCAGGAATGGCA+GGG 0.643983 7_2:+54740333 None:intergenic
ACAACCATTATAATGGATGA+GGG 0.649437 7_2:+54735081 None:intergenic
TTTGTGCAAAGAACACCCAA+TGG 0.650624 7_2:-54737128 Msa1063180:intron
TCTTTCAACTATGGACACAC+AGG 0.659181 7_2:-54738557 Msa1063180:CDS
TGATATCCTACAGAAAGTGG+AGG 0.678298 7_2:-54735337 Msa1063180:three_prime_UTR
TTAATTGGTACTCTGAGACA+TGG 0.684464 7_2:+54735298 None:intergenic
CGTGTTGGTTAACATCCAAG+AGG 0.687464 7_2:-54740387 Msa1063180:CDS
AAATTCAAGAAGAACAACCA+TGG 0.691332 7_2:-54740562 Msa1063180:CDS
TAATCCAAAGGTCTTGACCA+AGG 0.693880 7_2:-54740525 Msa1063180:CDS
TTGGTAGCAAGATTATGCTG+AGG 0.695132 7_2:+54737991 None:intergenic
AATGCCACCACAAAGTAGAG+AGG 0.697147 7_2:+54739176 None:intergenic
CAAGAGAACCTGTCTCAAGG+AGG 0.707842 7_2:+54737372 None:intergenic
AAGGAAGCAAGACATGGACA+TGG 0.708462 7_2:-54740506 Msa1063180:CDS
CTATTGGTATATGATTGAAG+GGG 0.727665 7_2:-54736625 Msa1063180:three_prime_UTR
CAAGCAACAATCACACACAG+AGG 0.748140 7_2:+54737428 None:intergenic
AGGTGAAGGTGAGAACAATG+GGG 0.775025 7_2:-54738408 Msa1063180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAATAAATATAA+GGG + chr7_2:54739918-54739937 None:intergenic 0.0%
!! TAAAAATAAAAATAAATATA+AGG + chr7_2:54739919-54739938 None:intergenic 0.0%
!! TAACATCATTAAAATTTATT+CGG + chr7_2:54735519-54735538 None:intergenic 10.0%
!!! ACTAATTTTTAATTAAAACA+AGG - chr7_2:54735865-54735884 Msa1063180:three_prime_UTR 10.0%
!! AATGATTCAAATATAAATAA+GGG + chr7_2:54736179-54736198 None:intergenic 10.0%
!!! TTATTTTTAATATTTGATTC+TGG - chr7_2:54736225-54736244 Msa1063180:three_prime_UTR 10.0%
!! TAAAAAATATATTGATATTG+CGG - chr7_2:54736875-54736894 Msa1063180:intron 10.0%
!! ACTAATATATTTCAATATAT+AGG - chr7_2:54738291-54738310 Msa1063180:intron 10.0%
!!! TTACTTAGTTATTTATATTT+TGG - chr7_2:54739573-54739592 Msa1063180:intron 10.0%
!! TAAATAATAGATATAAACTA+AGG + chr7_2:54739839-54739858 None:intergenic 10.0%
!!! ATCTATTATTTAATTTATTG+GGG - chr7_2:54739847-54739866 Msa1063180:intron 10.0%
!!! TTTTTTTTTTAATGAAATGT+GGG + chr7_2:54740119-54740138 None:intergenic 10.0%
!!! TTTTTTTTTTTAATGAAATG+TGG + chr7_2:54740120-54740139 None:intergenic 10.0%
!!! ATTTTATATACGATTTTAAT+GGG + chr7_2:54740144-54740163 None:intergenic 10.0%
!!! TATTTTATATACGATTTTAA+TGG + chr7_2:54740145-54740164 None:intergenic 10.0%
!! ATTAAAATCGTATATAAAAT+AGG - chr7_2:54740144-54740163 Msa1063180:intron 10.0%
!! TTATATATAGTTTAGTCAAA+TGG - chr7_2:54735841-54735860 Msa1063180:three_prime_UTR 15.0%
!! TATTATTCTATTCTATGATT+AGG - chr7_2:54735928-54735947 Msa1063180:three_prime_UTR 15.0%
!! ATCTATATCAATTAATTACA+TGG - chr7_2:54735977-54735996 Msa1063180:three_prime_UTR 15.0%
!! CAATGATTCAAATATAAATA+AGG + chr7_2:54736180-54736199 None:intergenic 15.0%
!! TTAATTATAAGTTAGATGAA+AGG + chr7_2:54737883-54737902 None:intergenic 15.0%
!!! AATACTATAGCTTTAAATTA+TGG - chr7_2:54738072-54738091 Msa1063180:intron 15.0%
!!! ATGAAAATTGTTTTAAATTC+CGG + chr7_2:54738240-54738259 None:intergenic 15.0%
!! GAAAACATAAAATATTTACT+TGG - chr7_2:54738458-54738477 Msa1063180:intron 15.0%
!! AATTGCACAAAATTAATTAA+GGG + chr7_2:54738848-54738867 None:intergenic 15.0%
!! AAATTGCACAAAATTAATTA+AGG + chr7_2:54738849-54738868 None:intergenic 15.0%
!! ATGATTAAAAAAATCTTAAG+AGG + chr7_2:54739087-54739106 None:intergenic 15.0%
!!! TAAAAAGAATTTTGTTTTTC+AGG - chr7_2:54739491-54739510 Msa1063180:intron 15.0%
!!! ATTTTGTTTAGATAATTAGA+TGG - chr7_2:54739599-54739618 Msa1063180:intron 15.0%
!!! TTTTGAAAAGAAGAATATTT+TGG + chr7_2:54739673-54739692 None:intergenic 15.0%
!!! TCTATTATTTAATTTATTGG+GGG - chr7_2:54739848-54739867 Msa1063180:intron 15.0%
!! TTAACATAGTATAATAATAG+AGG + chr7_2:54740009-54740028 None:intergenic 15.0%
!!! TTCCCTTTTTGTTTTAAATA+AGG - chr7_2:54735815-54735834 Msa1063180:three_prime_UTR 20.0%
!!! AGCCTTATTTAAAACAAAAA+GGG + chr7_2:54735820-54735839 None:intergenic 20.0%
!!! AAGCCTTATTTAAAACAAAA+AGG + chr7_2:54735821-54735840 None:intergenic 20.0%
!! AATTGTACTAAACTGTTTAT+AGG - chr7_2:54737465-54737484 Msa1063180:intron 20.0%
!! AAACTGTTTATAGGTTTATT+TGG - chr7_2:54737474-54737493 Msa1063180:intron 20.0%
!! ACAAAAATTTCATTCTTAAC+AGG - chr7_2:54737696-54737715 Msa1063180:intron 20.0%
!! ATTCATAATTCACATTCAAA+AGG + chr7_2:54738055-54738074 None:intergenic 20.0%
!!! TACATATTTTACTTACCATT+GGG + chr7_2:54738634-54738653 None:intergenic 20.0%
!!! ATACATATTTTACTTACCAT+TGG + chr7_2:54738635-54738654 None:intergenic 20.0%
!! ATGGTATATAACTATATGTT+TGG + chr7_2:54738684-54738703 None:intergenic 20.0%
!! TGTGAATTTGAATTAATTTC+AGG - chr7_2:54738892-54738911 Msa1063180:intron 20.0%
!! AAAGATTAAGCAATTCAAAA+GGG + chr7_2:54739228-54739247 None:intergenic 20.0%
!! AAAAGATTAAGCAATTCAAA+AGG + chr7_2:54739229-54739248 None:intergenic 20.0%
!! CAGAAGAAACTTATTTAAAA+TGG - chr7_2:54739279-54739298 Msa1063180:CDS 20.0%
!!! TACGATGATTTTTTTTTTAG+AGG - chr7_2:54739303-54739322 Msa1063180:CDS 20.0%
!!! ACGATGATTTTTTTTTTAGA+GGG - chr7_2:54739304-54739323 Msa1063180:CDS 20.0%
!! GTTCATCTAATATAACATTT+GGG + chr7_2:54739722-54739741 None:intergenic 20.0%
!! AGTTCATCTAATATAACATT+TGG + chr7_2:54739723-54739742 None:intergenic 20.0%
!! TAGGATTTAAAAGAATCATT+TGG + chr7_2:54739798-54739817 None:intergenic 20.0%
!!! TCTTTTAAATCCTAAAGTTT+AGG - chr7_2:54739804-54739823 Msa1063180:intron 20.0%
!! ATAGTATAATAATAGAGGAT+CGG + chr7_2:54740004-54740023 None:intergenic 20.0%
!!! AATTCTCAATGTTTTTGCAA+CGG + chr7_2:54735624-54735643 None:intergenic 25.0%
!!! TTTTTTATTGCAAATAGCCA+TGG - chr7_2:54736065-54736084 Msa1063180:three_prime_UTR 25.0%
!! TTTTTATTGCAAATAGCCAT+GGG - chr7_2:54736066-54736085 Msa1063180:three_prime_UTR 25.0%
!! GAACAATTTTATATACCTGT+AGG + chr7_2:54736317-54736336 None:intergenic 25.0%
!!! AAAACTATGGAAGTGTTAAT+TGG + chr7_2:54736642-54736661 None:intergenic 25.0%
!! AATACCTCGATTTAAAACTA+TGG + chr7_2:54736655-54736674 None:intergenic 25.0%
! ACTGAAAAATTTCACTCATT+AGG + chr7_2:54736944-54736963 None:intergenic 25.0%
!! GTTCTTTAATTTCTCTATAG+TGG - chr7_2:54736962-54736981 Msa1063180:CDS 25.0%
!! CAATTCATCGTTTTCATATA+TGG + chr7_2:54737253-54737272 None:intergenic 25.0%
! CATTCATCAACTTTATAGTT+TGG + chr7_2:54737917-54737936 None:intergenic 25.0%
! ATTTCAGTTTCACTTGAATA+AGG + chr7_2:54737946-54737965 None:intergenic 25.0%
! TACTCAAATTTCAATGTTTG+CGG - chr7_2:54738015-54738034 Msa1063180:CDS 25.0%
!!! ATAGCTTTAAATTATGGTTG+TGG - chr7_2:54738078-54738097 Msa1063180:intron 25.0%
! TATAATAGTATGCAGAGTAT+CGG + chr7_2:54738117-54738136 None:intergenic 25.0%
! TTGGCAATTAATGTAAACTT+AGG + chr7_2:54738665-54738684 None:intergenic 25.0%
! CATGAATTACAAATTCAGAA+TGG + chr7_2:54738703-54738722 None:intergenic 25.0%
! TGATGTTATTAACACCATTT+GGG + chr7_2:54738759-54738778 None:intergenic 25.0%
! ATAACATAGACTTACCTATT+AGG + chr7_2:54738815-54738834 None:intergenic 25.0%
! TTTGAATTAATTTCAGGCTT+TGG - chr7_2:54738898-54738917 Msa1063180:intron 25.0%
! TTTATGGAAGGAACTAAAAT+AGG + chr7_2:54738924-54738943 None:intergenic 25.0%
!! ATTGAATCTGTATTTGAGTT+TGG + chr7_2:54738969-54738988 None:intergenic 25.0%
! CAAATACAGATTCAATACAT+TGG - chr7_2:54738973-54738992 Msa1063180:intron 25.0%
!! AGATTCAATACATTGGTTAT+TGG - chr7_2:54738980-54738999 Msa1063180:intron 25.0%
! AAGCTTGCAATAAAATTTCA+TGG + chr7_2:54739054-54739073 None:intergenic 25.0%
! TGCATTGGATATCAAATAAA+TGG - chr7_2:54739161-54739180 Msa1063180:CDS 25.0%
! TTCAGTTGAAATATGATTTG+TGG + chr7_2:54739347-54739366 None:intergenic 25.0%
! TTAAGTTCTACATCATGATA+GGG - chr7_2:54739405-54739424 Msa1063180:intron 25.0%
!! TAGATTCTTCTTTTTGGATT+AGG - chr7_2:54739646-54739665 Msa1063180:CDS 25.0%
!! GGTTTGTATAAAAAGTACAT+GGG + chr7_2:54739701-54739720 None:intergenic 25.0%
! TAGAATTCGCTTAAATTGTA+GGG + chr7_2:54739889-54739908 None:intergenic 25.0%
! TTAAATTTCAACCTTATTCG+TGG - chr7_2:54739936-54739955 Msa1063180:intron 25.0%
!!! ATTTTGTCCTGTTTTTGCAA+TGG - chr7_2:54735150-54735169 Msa1063180:three_prime_UTR 30.0%
!!! TTTTGTCCTGTTTTTGCAAT+GGG - chr7_2:54735151-54735170 Msa1063180:three_prime_UTR 30.0%
AAATTCAAGAAGAACAACCA+TGG - chr7_2:54735182-54735201 Msa1063180:three_prime_UTR 30.0%
GTGACAACAATTTACAACTA+TGG - chr7_2:54735670-54735689 Msa1063180:three_prime_UTR 30.0%
CAACAATTTACAACTATGGT+TGG - chr7_2:54735674-54735693 Msa1063180:three_prime_UTR 30.0%
ATAGACTCTTGATCCAAAAA+AGG - chr7_2:54735744-54735763 Msa1063180:three_prime_UTR 30.0%
TAGACTCTTGATCCAAAAAA+GGG - chr7_2:54735745-54735764 Msa1063180:three_prime_UTR 30.0%
!! TTTTGACTGAAACCCTTTTT+TGG + chr7_2:54735760-54735779 None:intergenic 30.0%
! TTTTCATACTGAGCTTACTT+GGG - chr7_2:54736089-54736108 Msa1063180:three_prime_UTR 30.0%
TGTACTCTATCTTATTACAG+TGG - chr7_2:54736407-54736426 Msa1063180:three_prime_UTR 30.0%
GTACTCTATCTTATTACAGT+GGG - chr7_2:54736408-54736427 Msa1063180:three_prime_UTR 30.0%
AATACTTGACAACAGCAATT+TGG + chr7_2:54736503-54736522 None:intergenic 30.0%
! GTTGTCAAGTATTCTCTTTT+AGG - chr7_2:54736510-54736529 Msa1063180:three_prime_UTR 30.0%
AAGAAGAAGATTTGAAAGGA+TGG + chr7_2:54736538-54736557 None:intergenic 30.0%
! GAAGTGTTAATTGGATTACA+GGG + chr7_2:54736633-54736652 None:intergenic 30.0%
!!! ACTTCCATAGTTTTAAATCG+AGG - chr7_2:54736648-54736667 Msa1063180:three_prime_UTR 30.0%
AAGATCTGCAACTGAAATTT+AGG + chr7_2:54736901-54736920 None:intergenic 30.0%
! TGAATAGTAATGGAAGCAAA+TGG + chr7_2:54737068-54737087 None:intergenic 30.0%
CTTACTTGATCTTTCAACTA+TGG - chr7_2:54737178-54737197 Msa1063180:CDS 30.0%
CATGATATACATTGTTGAAC+AGG - chr7_2:54737312-54737331 Msa1063180:intron 30.0%
ATATACATTGTTGAACAGGA+AGG - chr7_2:54737316-54737335 Msa1063180:intron 30.0%
! TGCTTTGTTATCTGAATATG+TGG - chr7_2:54737426-54737445 Msa1063180:CDS 30.0%
! ATATGTGGTTGATACAATTC+AGG - chr7_2:54737441-54737460 Msa1063180:intron 30.0%
CATAAGCGCTTATCATATAA+GGG + chr7_2:54737634-54737653 None:intergenic 30.0%
ATAATCTTGCTACCAATAGT+TGG - chr7_2:54737760-54737779 Msa1063180:CDS 30.0%
GTTAGATGAAAGGAAACATA+TGG + chr7_2:54737873-54737892 None:intergenic 30.0%
CTCTGCATACTATTATATTG+CGG - chr7_2:54738120-54738139 Msa1063180:intron 30.0%
TATTATATTGCGGAAAAGTG+TGG - chr7_2:54738130-54738149 Msa1063180:intron 30.0%
ATAAAAAGTCTCTTGTATCG+CGG - chr7_2:54738195-54738214 Msa1063180:intron 30.0%
!! ATCATCGCCATTTTATTTGT+AGG - chr7_2:54738525-54738544 Msa1063180:intron 30.0%
GTACCATCCTACAAATAAAA+TGG + chr7_2:54738535-54738554 None:intergenic 30.0%
CAATAACAAAGTAGCAAAGT+AGG + chr7_2:54738585-54738604 None:intergenic 30.0%
!! CTACTTTGCTACTTTGTTAT+TGG - chr7_2:54738583-54738602 Msa1063180:CDS 30.0%
GTGATGTTATTAACACCATT+TGG + chr7_2:54738760-54738779 None:intergenic 30.0%
TTAGTTCCTTCCATAAATGA+AGG - chr7_2:54738927-54738946 Msa1063180:intron 30.0%
! TTATTGCAAGCTTTGTGAAT+AGG - chr7_2:54739061-54739080 Msa1063180:intron 30.0%
! TCATATGTTTTGTGTCCTAT+TGG - chr7_2:54739103-54739122 Msa1063180:intron 30.0%
TCCTATTGGTATATGATTGA+AGG - chr7_2:54739117-54739136 Msa1063180:intron 30.0%
CCTATTGGTATATGATTGAA+GGG - chr7_2:54739118-54739137 Msa1063180:intron 30.0%
CTATTGGTATATGATTGAAG+GGG - chr7_2:54739119-54739138 Msa1063180:intron 30.0%
GTTAAGTTCTACATCATGAT+AGG - chr7_2:54739404-54739423 Msa1063180:intron 30.0%
!!! AACTTTTTAGCTCTAGTTTG+AGG + chr7_2:54739549-54739568 None:intergenic 30.0%
! GTGAAGTAGATTCTTCTTTT+TGG - chr7_2:54739640-54739659 Msa1063180:CDS 30.0%
! GGGTTTGTATAAAAAGTACA+TGG + chr7_2:54739702-54739721 None:intergenic 30.0%
GTACAACTAACCTAAACTTT+AGG + chr7_2:54739817-54739836 None:intergenic 30.0%
CTAGAATTCGCTTAAATTGT+AGG + chr7_2:54739890-54739909 None:intergenic 30.0%
AAAAGCAATCACAAATAAGC+AGG - chr7_2:54740093-54740112 Msa1063180:intron 30.0%
! CGAAGGATTGATTTATCTTT+CGG + chr7_2:54740175-54740194 None:intergenic 30.0%
CAGTGTTTGTTTGGATTATT+AGG + chr7_2:54740242-54740261 None:intergenic 30.0%
CATTGCATTCTGCAATTAAT+TGG + chr7_2:54740464-54740483 None:intergenic 30.0%
!! ACAACCATTATAATGGATGA+GGG + chr7_2:54740666-54740685 None:intergenic 30.0%
AAGTGACACAACCATTATAA+TGG + chr7_2:54740673-54740692 None:intergenic 30.0%
TTTGGAGAATGGTAATCCAA+AGG - chr7_2:54735207-54735226 Msa1063180:three_prime_UTR 35.0%
AACATCCAAGAGGTTATTCT+TGG - chr7_2:54735367-54735386 Msa1063180:three_prime_UTR 35.0%
GTCACAAAATTGTTGAGTTC+AGG - chr7_2:54735569-54735588 Msa1063180:three_prime_UTR 35.0%
! GTTTTCATACTGAGCTTACT+TGG - chr7_2:54736088-54736107 Msa1063180:three_prime_UTR 35.0%
! TAAGGGTGCAATAAGTTCAT+TGG + chr7_2:54736162-54736181 None:intergenic 35.0%
GACTTCTTAATGCAACATGT+GGG - chr7_2:54736433-54736452 Msa1063180:three_prime_UTR 35.0%
GCACAAGAAGAAGATTTGAA+AGG + chr7_2:54736542-54736561 None:intergenic 35.0%
TCAAATCTTCTTCTTGTGCT+TGG - chr7_2:54736543-54736562 Msa1063180:three_prime_UTR 35.0%
!! GGAAGTGTTAATTGGATTAC+AGG + chr7_2:54736634-54736653 None:intergenic 35.0%
! AATCGAGGTATTTAACCAAG+TGG - chr7_2:54736663-54736682 Msa1063180:three_prime_UTR 35.0%
! AATCTTGGTAATCCGAAGTT+CGG + chr7_2:54736789-54736808 None:intergenic 35.0%
TGATTGATGCAGTCTCAATT+TGG - chr7_2:54736830-54736849 Msa1063180:three_prime_UTR 35.0%
!!! GTCTCAATTTGGTTTTACTG+TGG - chr7_2:54736841-54736860 Msa1063180:intron 35.0%
!!! CAGATCTTTTTCAAATTCCG+CGG - chr7_2:54736913-54736932 Msa1063180:intron 35.0%
GAATTCACTAATGCTGCTAT+TGG - chr7_2:54737032-54737051 Msa1063180:intron 35.0%
GCACTGAATGTGAATAGTAA+TGG + chr7_2:54737078-54737097 None:intergenic 35.0%
!!! ATTGGATTTTGGAGTAGCTT+TGG - chr7_2:54737376-54737395 Msa1063180:CDS 35.0%
!!! AGGTTTATTTGGTGTGCTTT+TGG - chr7_2:54737485-54737504 Msa1063180:intron 35.0%
GCATAAGCGCTTATCATATA+AGG + chr7_2:54737635-54737654 None:intergenic 35.0%
GAAATGAATTTCATGACTGC+AGG - chr7_2:54737961-54737980 Msa1063180:CDS 35.0%
! ATTTCCTTAGGTGTTGCATT+GGG - chr7_2:54737986-54738005 Msa1063180:CDS 35.0%
TAAATTATGGTTGTGGTCTG+TGG - chr7_2:54738085-54738104 Msa1063180:intron 35.0%
! TGTGATTGTTGCTTGGATAA+TGG - chr7_2:54738324-54738343 Msa1063180:CDS 35.0%
! GTGATTGTTGCTTGGATAAT+GGG - chr7_2:54738325-54738344 Msa1063180:CDS 35.0%
!! TTGGATAATGGGTGTGAAAA+TGG - chr7_2:54738336-54738355 Msa1063180:CDS 35.0%
!! TCGCCATTTTATTTGTAGGA+TGG - chr7_2:54738529-54738548 Msa1063180:intron 35.0%
AGTAGCAAAGTAGGAGAATA+AGG + chr7_2:54738576-54738595 None:intergenic 35.0%
!!! TGCAGTTTTAAGTGCCTAAT+AGG - chr7_2:54738798-54738817 Msa1063180:intron 35.0%
TTCCTTCCATAAATGAAGGA+TGG - chr7_2:54738931-54738950 Msa1063180:intron 35.0%
! TCATTTTGTCACATCCAGAT+AGG - chr7_2:54739004-54739023 Msa1063180:intron 35.0%
CCCTTCAATCATATACCAAT+AGG + chr7_2:54739121-54739140 None:intergenic 35.0%
TGGAATTGTTCTCATGAGTT+TGG - chr7_2:54739181-54739200 Msa1063180:CDS 35.0%
GGAATTGTTCTCATGAGTTT+GGG - chr7_2:54739182-54739201 Msa1063180:CDS 35.0%
TAATTAGATGGTCGTGCTTA+AGG - chr7_2:54739611-54739630 Msa1063180:intron 35.0%
ACAAAGATATGCCACGAATA+AGG + chr7_2:54739950-54739969 None:intergenic 35.0%
! CAACAAAGTGAGCAATTTTG+AGG - chr7_2:54740065-54740084 Msa1063180:intron 35.0%
ATAATAACCGAAACTCTCAC+GGG + chr7_2:54740210-54740229 None:intergenic 35.0%
GATAATAACCGAAACTCTCA+CGG + chr7_2:54740211-54740230 None:intergenic 35.0%
TACTGATATCCTACAGAAAG+TGG - chr7_2:54740404-54740423 Msa1063180:CDS 35.0%
!! TTAATTGGTACTCTGAGACA+TGG + chr7_2:54740449-54740468 None:intergenic 35.0%
TGCAGAATGCAATGCTTTAT+CGG - chr7_2:54740470-54740489 Msa1063180:CDS 35.0%
!! CACAACCATTATAATGGATG+AGG + chr7_2:54740667-54740686 None:intergenic 35.0%
ACTTACGTCTTCAACTACAT+CGG - chr7_2:54740689-54740708 Msa1063180:five_prime_UTR 35.0%
! AGTACTTGTCTCACTTGCTA+TGG + chr7_2:54735097-54735116 None:intergenic 40.0%
! AGAAGAACAACCATGGCTTT+TGG - chr7_2:54735189-54735208 Msa1063180:three_prime_UTR 40.0%
TTACCATTCTCCAAAAGCCA+TGG + chr7_2:54735202-54735221 None:intergenic 40.0%
TAATCCAAAGGTCTTGACCA+AGG - chr7_2:54735219-54735238 Msa1063180:three_prime_UTR 40.0%
ATGATCAGATTTCTTGCGCA+AGG + chr7_2:54735299-54735318 None:intergenic 40.0%
TGATCATACTCTTGTGTCCA+AGG - chr7_2:54735312-54735331 Msa1063180:three_prime_UTR 40.0%
TGGTACCAAGAATAACCTCT+TGG + chr7_2:54735375-54735394 None:intergenic 40.0%
AACTTACTCTTCCTAAGCCA+AGG + chr7_2:54735447-54735466 None:intergenic 40.0%
TGTTGTCACAACTGCAATTG+CGG + chr7_2:54735659-54735678 None:intergenic 40.0%
AAGCTCAGTATGAAAACCCA+TGG + chr7_2:54736085-54736104 None:intergenic 40.0%
AGACAAATTGCCTTCTTCAC+TGG - chr7_2:54736290-54736309 Msa1063180:three_prime_UTR 40.0%
CTCTATCTTATTACAGTGGG+AGG - chr7_2:54736411-54736430 Msa1063180:three_prime_UTR 40.0%
GGACTTCTTAATGCAACATG+TGG - chr7_2:54736432-54736451 Msa1063180:three_prime_UTR 40.0%
!! CATATTTTTGCTCCACTCCA+AGG + chr7_2:54736599-54736618 None:intergenic 40.0%
ATCAATCACCCTTTGATCCA+GGG + chr7_2:54736818-54736837 None:intergenic 40.0%
TCACTCATTAGGTTAAACCG+CGG + chr7_2:54736933-54736952 None:intergenic 40.0%
GATCTTGACAAGTAGAGTGA+AGG + chr7_2:54737126-54737145 None:intergenic 40.0%
ATCTGCTAGCATTGTGATGT+TGG - chr7_2:54737143-54737162 Msa1063180:CDS 40.0%
TCTTTCAACTATGGACACAC+AGG - chr7_2:54737187-54737206 Msa1063180:CDS 40.0%
ATTGTTGAACAGGAAGGTGA+AGG - chr7_2:54737322-54737341 Msa1063180:intron 40.0%
AAGGTGAAGGTGAGAACAAT+GGG - chr7_2:54737335-54737354 Msa1063180:intron 40.0%
! AAGAGGCTGTGATTGGATTT+TGG - chr7_2:54737365-54737384 Msa1063180:CDS 40.0%
!!! GATTTTGGAGTAGCTTTGGT+TGG - chr7_2:54737380-54737399 Msa1063180:CDS 40.0%
GTATAAGCTATGAGCGTGTT+TGG - chr7_2:54737540-54737559 Msa1063180:intron 40.0%
AACAGGATGCATCAGATTCA+TGG - chr7_2:54737713-54737732 Msa1063180:intron 40.0%
ACAGGATGCATCAGATTCAT+GGG - chr7_2:54737714-54737733 Msa1063180:intron 40.0%
! TTGGTAGCAAGATTATGCTG+AGG + chr7_2:54737756-54737775 None:intergenic 40.0%
TTTCGCTTTCAAGAACAAGC+TGG - chr7_2:54737813-54737832 Msa1063180:intron 40.0%
! CATTTCCTTAGGTGTTGCAT+TGG - chr7_2:54737985-54738004 Msa1063180:CDS 40.0%
! GACTTTTTATGTGTCCGCAT+TGG + chr7_2:54738185-54738204 None:intergenic 40.0%
GCTTTGGCAATTATAGTCAC+AGG - chr7_2:54738394-54738413 Msa1063180:CDS 40.0%
GGTACTTCTCACTACTTGAA+AGG - chr7_2:54738550-54738569 Msa1063180:CDS 40.0%
TTTGTGCAAAGAACACCCAA+TGG - chr7_2:54738616-54738635 Msa1063180:CDS 40.0%
CATTTGGGTCTGTGGAAAAA+AGG + chr7_2:54738744-54738763 None:intergenic 40.0%
!!! CTTTTTTCCACAGACCCAAA+TGG - chr7_2:54738742-54738761 Msa1063180:intron 40.0%
ATTAACACCATTTGGGTCTG+TGG + chr7_2:54738752-54738771 None:intergenic 40.0%
TGCCATCCTTCATTTATGGA+AGG + chr7_2:54738936-54738955 None:intergenic 40.0%
ATGCTGCCATCCTTCATTTA+TGG + chr7_2:54738940-54738959 None:intergenic 40.0%
! TTTTGTCACATCCAGATAGG+AGG - chr7_2:54739007-54739026 Msa1063180:intron 40.0%
TTTGTCACATCCAGATAGGA+GGG - chr7_2:54739008-54739027 Msa1063180:intron 40.0%
!! ACTTTTTCTTCCCTCCTATC+TGG + chr7_2:54739021-54739040 None:intergenic 40.0%
TTTCTGATCGTGCATTGCAT+TGG - chr7_2:54739146-54739165 Msa1063180:CDS 40.0%
AATCAATCGGAATCATCGGA+TGG + chr7_2:54739973-54739992 None:intergenic 40.0%
TGCGAATCAATCGGAATCAT+CGG + chr7_2:54739977-54739996 None:intergenic 40.0%
ATCGGAAGTTGCGAATCAAT+CGG + chr7_2:54739986-54740005 None:intergenic 40.0%
TGATATCCTACAGAAAGTGG+AGG - chr7_2:54740407-54740426 Msa1063180:CDS 40.0%
!! TGTATTATCGACTCAAGCTC+TGG + chr7_2:54740561-54740580 None:intergenic 40.0%
ACGACACGAGCATAATCAAT+GGG + chr7_2:54740588-54740607 None:intergenic 40.0%
AACGACACGAGCATAATCAA+TGG + chr7_2:54740589-54740608 None:intergenic 40.0%
TCCATCTCTCTTTCGTTTAC+AGG - chr7_2:54740632-54740651 Msa1063180:five_prime_UTR 40.0%
CCATCTCTCTTTCGTTTACA+GGG - chr7_2:54740633-54740652 Msa1063180:five_prime_UTR 40.0%
CATCTCTCTTTCGTTTACAG+GGG - chr7_2:54740634-54740653 Msa1063180:five_prime_UTR 40.0%
CTTACGTCTTCAACTACATC+GGG - chr7_2:54740690-54740709 Msa1063180:five_prime_UTR 40.0%
CGAGAACCCATTGCAAAAAC+AGG + chr7_2:54735160-54735179 None:intergenic 45.0%
!! CAACCATGGCTTTTGGAGAA+TGG - chr7_2:54735196-54735215 Msa1063180:three_prime_UTR 45.0%
TTGACCAAGGAAGCAAGACA+TGG - chr7_2:54735232-54735251 Msa1063180:three_prime_UTR 45.0%
ATGTCCATGTCTTGCTTCCT+TGG + chr7_2:54735239-54735258 None:intergenic 45.0%
AAGGAAGCAAGACATGGACA+TGG - chr7_2:54735238-54735257 Msa1063180:three_prime_UTR 45.0%
AAGACATGTTATGCGCAGTC+CGG + chr7_2:54735270-54735289 None:intergenic 45.0%
!! CGTGTTGGTTAACATCCAAG+AGG - chr7_2:54735357-54735376 Msa1063180:three_prime_UTR 45.0%
CAACCAGTCTAATCTGTGTG+CGG - chr7_2:54735714-54735733 Msa1063180:three_prime_UTR 45.0%
GTGAGCTTTCTCACAGAGTA+AGG - chr7_2:54736133-54736152 Msa1063180:three_prime_UTR 45.0%
CTTGGAACCTCTCTACTTTG+TGG - chr7_2:54736561-54736580 Msa1063180:three_prime_UTR 45.0%
AATGCCACCACAAAGTAGAG+AGG + chr7_2:54736571-54736590 None:intergenic 45.0%
ACCAAGTGGTTGACCTTAAG+CGG - chr7_2:54736677-54736696 Msa1063180:three_prime_UTR 45.0%
TCGAACTCACTAACCGCTTA+AGG + chr7_2:54736693-54736712 None:intergenic 45.0%
GTGAGTTCGACAAATCGTTC+AGG - chr7_2:54736703-54736722 Msa1063180:three_prime_UTR 45.0%
GAGAACCTAAGTTCGAATCC+TGG - chr7_2:54736725-54736744 Msa1063180:three_prime_UTR 45.0%
TGCAACCAGGATTCGAACTT+AGG + chr7_2:54736733-54736752 None:intergenic 45.0%
AGTTCGAATCCTGGTTGCAA+CGG - chr7_2:54736734-54736753 Msa1063180:three_prime_UTR 45.0%
TTACCAAGATTCCTTTCCCC+TGG - chr7_2:54736798-54736817 Msa1063180:three_prime_UTR 45.0%
ATTCCTTTCCCCTGGATCAA+AGG - chr7_2:54736806-54736825 Msa1063180:three_prime_UTR 45.0%
TTCCTTTCCCCTGGATCAAA+GGG - chr7_2:54736807-54736826 Msa1063180:three_prime_UTR 45.0%
TCAATCACCCTTTGATCCAG+GGG + chr7_2:54736817-54736836 None:intergenic 45.0%
CATCAATCACCCTTTGATCC+AGG + chr7_2:54736819-54736838 None:intergenic 45.0%
GAAGGTGAAGGTGAGAACAA+TGG - chr7_2:54737334-54737353 Msa1063180:intron 45.0%
AGGTGAAGGTGAGAACAATG+GGG - chr7_2:54737336-54737355 Msa1063180:intron 45.0%
!! TTGGAGTAGCTTTGGTTGGT+TGG - chr7_2:54737384-54737403 Msa1063180:CDS 45.0%
CAGGATGCATCAGATTCATG+GGG - chr7_2:54737715-54737734 Msa1063180:intron 45.0%
TCAGCTGCATTGCCAACTAT+TGG + chr7_2:54737775-54737794 None:intergenic 45.0%
TGACTGCAGGACATTTCCTT+AGG - chr7_2:54737974-54737993 Msa1063180:CDS 45.0%
AGAACCCAATGCAACACCTA+AGG + chr7_2:54737993-54738012 None:intergenic 45.0%
ATGGTTGTGGTCTGTGGTTA+CGG - chr7_2:54738091-54738110 Msa1063180:intron 45.0%
CAAGCAACAATCACACACAG+AGG + chr7_2:54738319-54738338 None:intergenic 45.0%
CTCTGTGTGTGATTGTTGCT+TGG - chr7_2:54738317-54738336 Msa1063180:CDS 45.0%
AACTTCAACCTCCTTGAGAC+AGG - chr7_2:54738364-54738383 Msa1063180:CDS 45.0%
AAGCAAGAGAACCTGTCTCA+AGG + chr7_2:54738378-54738397 None:intergenic 45.0%
TGAGACAGGTTCTCTTGCTT+TGG - chr7_2:54738378-54738397 Msa1063180:CDS 45.0%
AGTCACAGGCTTCACTTTAC+AGG - chr7_2:54738408-54738427 Msa1063180:CDS 45.0%
CCATGCATGCAGTGTTTGTT+TGG + chr7_2:54740251-54740270 None:intergenic 45.0%
CCAAACAAACACTGCATGCA+TGG - chr7_2:54740248-54740267 Msa1063180:intron 45.0%
TTGATCGAGATCGGCAATGA+AGG + chr7_2:54740289-54740308 None:intergenic 45.0%
!! GACATCGAGTTGATCGAGAT+CGG + chr7_2:54740298-54740317 None:intergenic 45.0%
AATCATCGTCGTCGTCGTTA+GGG + chr7_2:54740353-54740372 None:intergenic 45.0%
AAATCATCGTCGTCGTCGTT+AGG + chr7_2:54740354-54740373 None:intergenic 45.0%
GATATCAGTATAGCGCTGCT+GGG + chr7_2:54740394-54740413 None:intergenic 45.0%
AGACTTCCTCCACTTTCTGT+AGG + chr7_2:54740416-54740435 None:intergenic 45.0%
CCCTGTAAACGAAAGAGAGA+TGG + chr7_2:54740636-54740655 None:intergenic 45.0%
!! CCATTATAATGGATGAGGGC+AGG + chr7_2:54740662-54740681 None:intergenic 45.0%
CCTGCCCTCATCCATTATAA+TGG - chr7_2:54740659-54740678 Msa1063180:five_prime_UTR 45.0%
!! AAAAATGAAATATAATAATT+TGG + chr7_2:54739746-54739765 None:intergenic 5.0%
!!! TTATTATATTTCATTTTTTT+AGG - chr7_2:54739748-54739767 Msa1063180:intron 5.0%
!!! TATTATATTTCATTTTTTTA+GGG - chr7_2:54739749-54739768 Msa1063180:intron 5.0%
!!! ATATCTATTATTTAATTTAT+TGG - chr7_2:54739845-54739864 Msa1063180:intron 5.0%
!!! TATCTATTATTTAATTTATT+GGG - chr7_2:54739846-54739865 Msa1063180:intron 5.0%
GCTTCCTTGGTCAAGACCTT+TGG + chr7_2:54735226-54735245 None:intergenic 50.0%
AAGCAAGACATGGACATGGC+CGG - chr7_2:54735242-54735261 Msa1063180:three_prime_UTR 50.0%
AAGCGAAGCACATCGAACCT+TGG + chr7_2:54735332-54735351 None:intergenic 50.0%
AGGTTCGATGTGCTTCGCTT+AGG - chr7_2:54735332-54735351 Msa1063180:three_prime_UTR 50.0%
GGTTCGATGTGCTTCGCTTA+GGG - chr7_2:54735333-54735352 Msa1063180:three_prime_UTR 50.0%
AGGGAAGAGAATGGACAGCT+TGG + chr7_2:54735395-54735414 None:intergenic 50.0%
AGGAATGGCAGGGAAGAGAA+TGG + chr7_2:54735404-54735423 None:intergenic 50.0%
AGCAACAATGGCAGCAGGAA+TGG + chr7_2:54735419-54735438 None:intergenic 50.0%
TAGTGAGCAACAATGGCAGC+AGG + chr7_2:54735424-54735443 None:intergenic 50.0%
GCCATTGTTGCTCACTACCT+TGG - chr7_2:54735427-54735446 Msa1063180:three_prime_UTR 50.0%
GCCAAGGTAGTGAGCAACAA+TGG + chr7_2:54735431-54735450 None:intergenic 50.0%
GTTGCTCACTACCTTGGCTT+AGG - chr7_2:54735433-54735452 Msa1063180:three_prime_UTR 50.0%
CGCACACAGATTAGACTGGT+TGG + chr7_2:54735716-54735735 None:intergenic 50.0%
AAGCTCACACGTTCAGCAAG+TGG + chr7_2:54736121-54736140 None:intergenic 50.0%
ACCTGTAGGACCAGTGAAGA+AGG + chr7_2:54736303-54736322 None:intergenic 50.0%
GGAACCTCTCTACTTTGTGG+TGG - chr7_2:54736564-54736583 Msa1063180:three_prime_UTR 50.0%
TGTGGTGGCATTGCTAACCT+TGG - chr7_2:54736579-54736598 Msa1063180:three_prime_UTR 50.0%
TGGCATTGCTAACCTTGGAG+TGG - chr7_2:54736584-54736603 Msa1063180:three_prime_UTR 50.0%
ACCGCTTAAGGTCAACCACT+TGG + chr7_2:54736681-54736700 None:intergenic 50.0%
ACCAGGCTTTACTTACCTCC+TGG - chr7_2:54736763-54736782 Msa1063180:three_prime_UTR 50.0%
GATCCAGGGGAAAGGAATCT+TGG + chr7_2:54736804-54736823 None:intergenic 50.0%
GAACAATGGGGCAGAAGAAG+AGG - chr7_2:54737348-54737367 Msa1063180:CDS 50.0%
GCAGAAGAAGAGGCTGTGAT+TGG - chr7_2:54737358-54737377 Msa1063180:CDS 50.0%
!! AGTAGCTTTGGTTGGTTGGC+TGG - chr7_2:54737388-54737407 Msa1063180:CDS 50.0%
! GCGGAAAAGTGTGGCAGATA+CGG - chr7_2:54738139-54738158 Msa1063180:intron 50.0%
GGCAGATACGGTCGAAATTG+CGG - chr7_2:54738151-54738170 Msa1063180:intron 50.0%
! TTGCGGCTCTGATACCAATG+CGG - chr7_2:54738168-54738187 Msa1063180:intron 50.0%
TTGTATCGCGGCTGCAATTG+CGG - chr7_2:54738207-54738226 Msa1063180:intron 50.0%
CAAGAGAACCTGTCTCAAGG+AGG + chr7_2:54738375-54738394 None:intergenic 50.0%
ACGGGAGAAGCAACAATCGA+AGG + chr7_2:54740192-54740211 None:intergenic 50.0%
TGCTTCTCCCGTGAGAGTTT+CGG - chr7_2:54740200-54740219 Msa1063180:intron 50.0%
GGATATCAGTATAGCGCTGC+TGG + chr7_2:54740395-54740414 None:intergenic 50.0%
TGCTTCGCTTAGGGTCGTGT+TGG - chr7_2:54735342-54735361 Msa1063180:three_prime_UTR 55.0%
CAATGGCAGCAGGAATGGCA+GGG + chr7_2:54735414-54735433 None:intergenic 55.0%
ACAATGGCAGCAGGAATGGC+AGG + chr7_2:54735415-54735434 None:intergenic 55.0%
ACGCCGCACACAGATTAGAC+TGG + chr7_2:54735720-54735739 None:intergenic 55.0%
AGTCTAATCTGTGTGCGGCG+TGG - chr7_2:54735719-54735738 Msa1063180:three_prime_UTR 55.0%
GCCTTCTTCACTGGTCCTAC+AGG - chr7_2:54736299-54736318 Msa1063180:three_prime_UTR 55.0%
GCCAGGAGGTAAGTAAAGCC+TGG + chr7_2:54736767-54736786 None:intergenic 55.0%
CTTACCTCCTGGCCGAACTT+CGG - chr7_2:54736774-54736793 Msa1063180:three_prime_UTR 55.0%
TAATCCGAAGTTCGGCCAGG+AGG + chr7_2:54736781-54736800 None:intergenic 55.0%
TGGTAATCCGAAGTTCGGCC+AGG + chr7_2:54736784-54736803 None:intergenic 55.0%
CACCCTTTGATCCAGGGGAA+AGG + chr7_2:54736812-54736831 None:intergenic 55.0%
GAAGGCTCTACTGTGAGTGC+AGG + chr7_2:54737108-54737127 None:intergenic 55.0%
GGCAATGCAGCTGAACATGC+AGG - chr7_2:54737781-54737800 Msa1063180:intron 55.0%
CTGCAATTGCGGTTGCTGAC+CGG - chr7_2:54738218-54738237 Msa1063180:intron 55.0%
CAGTATAGCGCTGCTGGGAT+CGG + chr7_2:54740389-54740408 None:intergenic 55.0%
TGTTATGCGCAGTCCGGCTC+CGG + chr7_2:54735264-54735283 None:intergenic 60.0%
GGTCAACGACCGTTGCAACC+AGG + chr7_2:54736746-54736765 None:intergenic 60.0%
GGTTGCAACGGTCGTTGACC+AGG - chr7_2:54736746-54736765 Msa1063180:three_prime_UTR 60.0%
GCTGGGATCGGTGCAACTTG+AGG + chr7_2:54740377-54740396 None:intergenic 60.0%
GACATGGACATGGCCGGAGC+CGG - chr7_2:54735248-54735267 Msa1063180:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 54735053 54740713 54735053 ID=Msa1063180;Name=Msa1063180
chr7_2 mRNA 54735053 54740713 54735053 ID=Msa1063180-mRNA-1;Parent=Msa1063180;Name=Msa1063180-mRNA-1;_AED=0.12;_eAED=0.12;_QI=116|1|1|1|0.90|0.83|12|1803|455
chr7_2 exon 54735053 54736852 54735053 ID=Msa1063180-mRNA-1:exon:10113;Parent=Msa1063180-mRNA-1
chr7_2 exon 54736947 54737011 54736947 ID=Msa1063180-mRNA-1:exon:10112;Parent=Msa1063180-mRNA-1
chr7_2 exon 54737129 54737219 54737129 ID=Msa1063180-mRNA-1:exon:10111;Parent=Msa1063180-mRNA-1
chr7_2 exon 54737337 54737453 54737337 ID=Msa1063180-mRNA-1:exon:10110;Parent=Msa1063180-mRNA-1
chr7_2 exon 54737730 54737783 54737730 ID=Msa1063180-mRNA-1:exon:10109;Parent=Msa1063180-mRNA-1
chr7_2 exon 54737932 54738048 54737932 ID=Msa1063180-mRNA-1:exon:10108;Parent=Msa1063180-mRNA-1
chr7_2 exon 54738304 54738432 54738304 ID=Msa1063180-mRNA-1:exon:10107;Parent=Msa1063180-mRNA-1
chr7_2 exon 54738536 54738748 54738536 ID=Msa1063180-mRNA-1:exon:10106;Parent=Msa1063180-mRNA-1
chr7_2 exon 54739143 54739339 54739143 ID=Msa1063180-mRNA-1:exon:10105;Parent=Msa1063180-mRNA-1
chr7_2 exon 54739446 54739474 54739446 ID=Msa1063180-mRNA-1:exon:10104;Parent=Msa1063180-mRNA-1
chr7_2 exon 54739617 54739684 54739617 ID=Msa1063180-mRNA-1:exon:10103;Parent=Msa1063180-mRNA-1
chr7_2 exon 54740307 54740713 54740307 ID=Msa1063180-mRNA-1:exon:10102;Parent=Msa1063180-mRNA-1
chr7_2 five_prime_UTR 54740598 54740713 54740598 ID=Msa1063180-mRNA-1:five_prime_utr;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54740307 54740597 54740307 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54739617 54739684 54739617 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54739446 54739474 54739446 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54739143 54739339 54739143 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54738536 54738748 54738536 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54738304 54738432 54738304 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54737932 54738048 54737932 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54737730 54737783 54737730 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54737337 54737453 54737337 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54737129 54737219 54737129 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 CDS 54736950 54737011 54736950 ID=Msa1063180-mRNA-1:cds;Parent=Msa1063180-mRNA-1
chr7_2 three_prime_UTR 54736947 54736949 54736947 ID=Msa1063180-mRNA-1:three_prime_utr;Parent=Msa1063180-mRNA-1
chr7_2 three_prime_UTR 54735053 54736852 54735053 ID=Msa1063180-mRNA-1:three_prime_utr;Parent=Msa1063180-mRNA-1
Gene Sequence

>Msa1063180

ATGGGTTCTCGTCAAATTCAAGAAGAACAACCATGGCTTTTGGAGAATGGTAATCCAAAGGTCTTGACCAAGGAAGCAAGACATGGACATGGCCGGAGCCGGACTGCGCATAACATGTCTTCTCAGTCCTTGCGCAAGAAATCTGATCATACTCTTGTGTCCAAGGTTCGATGTGCTTCGCTTAGGGTCGTGTTGGTTAACATCCAAGAGGTTATTCTTGGTACCAAGCTGTCCATTCTCTTCCCTGCCATTCCTGCTGCCATTGTTGCTCACTACCTTGGCTTAGGAAGACCATGGGTTTTCATACTGAGCTTACTTGGGCTTACACCACTTGCTGAACGTGTGAGCTTTCTCACAGAACAAATTGCCTTCTTCACTGGTCCTACAGTGGGAGGACTTCTTAATGCAACATGTGGGAATATTACTGAGCTGATAATAGCAATATTTGCTCTTAGCAGCAACCAAATTGCTGTTGTCAAGTATTCTCTTTTAGGTTCCATCCTTTCAAATCTTCTTCTTGTGCTTGGAACCTCTCTACTTTGTGGTGGCATTGCTAACCTTGGAGTGGAGCAAAAATATGACAGAAGACAAGCAGATGTGAATTCACTAATGCTGCTATTGGCATTGTTATGCCATTTGCTTCCATTACTATTCACATTCAGTGCTGCATCACCTGCACTCACAGTAGAGCCTTCACTCTACTTGTCAAGATCTGCTAGCATTGTGATGTTGGCTGCATATTTTGCTTACTTGATCTTTCAACTATGGACACACAGGCAATTATTTGAAGCTGAAGATGAAGGTGAAGGTGAGAACAATGGGGCAGAAGAAGAGGCTGTGATTGGATTTTGGAGTAGCTTTGGTTGGTTGGCTGGAATGACTGTGTTCATTGCTTTGTTATCTGAATATGTGGTTGATACAATTCAGGATGCATCAGATTCATGGGGTTTGTCTGTCAGTTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATTTTCGCTTTCAAGAACAAGCTGGACATTTCCTTAGGTGTTGCATTGGGTTCTGCTACTCAAATTTCAATGTTTGCGGTTCCTCTGTGTGTGATTGTTGCTTGGATAATGGGTGTGAAAATGGACTTAAACTTCAACCTCCTTGAGACAGGTTCTCTTGCTTTGGCAATTATAGTCACAGGCTTCACTTTACAGGATGGTACTTCTCACTACTTGAAAGGCCTTATTCTCCTACTTTGCTACTTTGTTATTGGTGCTTGCTTCTTTGTGCAAAGAACACCCAATGACCCAAATGGTGTTAATAACATCACAATTAAATCAGTCACTGATGCAGTTTTAAGTGCCTAA
Protein sequence

>Msa1063180

MGSRQIQEEQPWLLENGNPKVLTKEARHGHGRSRTAHNMSSQSLRKKSDHTLVSKVRCASLRVVLVNIQEVILGTKLSILFPAIPAAIVAHYLGLGRPWVFILSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNITELIIAIFALSSNQIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLGVEQKYDRRQADVNSLMLLLALLCHLLPLLFTFSAASPALTVEPSLYLSRSASIVMLAAYFAYLIFQLWTHRQLFEAEDEGEGENNGAEEEAVIGFWSSFGWLAGMTVFIALLSEYVVDTIQDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISMFAVPLCVIVAWIMGVKMDLNFNLLETGSLALAIIVTGFTLQDGTSHYLKGLILLLCYFVIGACFFVQRTPNDPNGVNNITIKSVTDAVLSA*