AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0282200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282200 MtrunA17_Chr2g0296941 96.541 318 11 0 4 321 28 345 0.0 629
Msa0282200 MtrunA17_Chr1g0187131 32.877 292 174 5 32 320 67 339 1.59e-35 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282200 AT4G20070.2 72.026 311 87 0 14 324 84 394 4.86e-167 471
Msa0282200 AT4G20070.1 72.403 308 85 0 14 321 84 391 1.39e-165 472
Msa0282200 AT5G43600.1 33.893 298 165 7 32 320 72 346 5.62e-34 130

Find 142 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGCAACCTTATCATTTC+TGG 0.095410 2_3:-17997194 Msa0282200:three_prime_UTR
ACATAACCCCAAACAGATTT+TGG 0.153224 2_3:+17999009 None:intergenic
TGCAAATGCAGAAGCTTTAT+TGG 0.176766 2_3:-17999852 Msa0282200:CDS
AAATTTAATTGTTACAAAAT+TGG 0.209089 2_3:+17997001 None:intergenic
TATTTGTAGCATGTAATTAT+AGG 0.239260 2_3:-17997128 Msa0282200:three_prime_UTR
ATGTGCTAGACGATGATATC+TGG 0.266224 2_3:-17997225 Msa0282200:three_prime_UTR
CGATAAATCTTATTCGAAAA+TGG 0.276645 2_3:-18000017 Msa0282200:CDS
TTTCCTTGATACCTCTTATC+AGG 0.279914 2_3:+17999175 None:intergenic
TTCCCACTTGGTGTCGTTAA+AGG 0.289921 2_3:-17998840 Msa0282200:CDS
AGATTTCAAACTACTTTCTT+AGG 0.292944 2_3:-17999244 Msa0282200:CDS
CTTATGCTGCAAGCTGTAAT+AGG 0.294960 2_3:-17996836 Msa0282200:three_prime_UTR
GAGCTGGCGTTTGTTGATTC+AGG 0.310318 2_3:+18001256 None:intergenic
GTATGATCCAAAATCTGTTT+GGG 0.312638 2_3:-17999016 Msa0282200:CDS
TTTGTGTAGGTCACGGTTAA+AGG 0.312855 2_3:-17998705 Msa0282200:intron
TTCAGCTGTGAACTTAGTTC+TGG 0.333589 2_3:+17997518 None:intergenic
TGCTGAACAAATTGTACTTA+TGG 0.340654 2_3:-17998622 Msa0282200:CDS
TTGGAAATTTGTCGCTTGCC+TGG 0.357528 2_3:+17998457 None:intergenic
AGTATGATCCAAAATCTGTT+TGG 0.358696 2_3:-17999017 Msa0282200:CDS
GTTGATGCTGGTAAATTTGA+TGG 0.363766 2_3:-17999676 Msa0282200:CDS
AAGTATATGTGAACATTGTA+AGG 0.369871 2_3:-17996744 Msa0282200:three_prime_UTR
AATTTGAGAACACGGCTATA+AGG 0.377022 2_3:+17997048 None:intergenic
ACCATACCTTGTGTTCAATA+AGG 0.385103 2_3:+17998235 None:intergenic
TTCATATATACCTTATTGTT+CGG 0.386389 2_3:-18001761 Msa0282200:five_prime_UTR
TTTCAGTTGGGTGGACCAAA+TGG 0.392422 2_3:-17999906 Msa0282200:intron
AATTTGTCGCTTGCCTGGCC+TGG 0.401249 2_3:+17998462 None:intergenic
AAATGTAAGCATGAATAAAC+TGG 0.406955 2_3:+17996883 None:intergenic
CTTGACACACTGACCTCAAC+AGG 0.410246 2_3:+17999577 None:intergenic
GACCATGTACATTTCCCATT+TGG 0.413557 2_3:+17999891 None:intergenic
AGGAACAGAACCGAACAATA+AGG 0.421071 2_3:+18001751 None:intergenic
TCGTAAGAAAGGTACTCTTC+AGG 0.428537 2_3:+17998582 None:intergenic
TTAGGCAGTGGTGCTATAGC+TGG 0.429341 2_3:-17999226 Msa0282200:CDS
AGTTCACTTGTTTGTACTGT+TGG 0.437924 2_3:-17998522 Msa0282200:CDS
GAACAAGTTGGTTTCCCACT+TGG 0.439155 2_3:-17998852 Msa0282200:CDS
TTGGTTGGCCTCCTCTTGAT+AGG 0.440619 2_3:+17997020 None:intergenic
GGTGTCGTTAAAGGCATAGC+TGG 0.445854 2_3:-17998831 Msa0282200:CDS
AGTGCTAGTAATGTCATTCC+AGG 0.447467 2_3:-17998480 Msa0282200:CDS
CATGGACATTGGAACAGTTC+CGG 0.452698 2_3:+17998668 None:intergenic
ATGTTTGAGAACAAATGAAA+AGG 0.458265 2_3:-18001223 Msa0282200:five_prime_UTR
ATGGAAAGCTGCAAAATCTA+AGG 0.459235 2_3:-17999603 Msa0282200:CDS
CACAGAACCACTCAGTTTGT+AGG 0.459294 2_3:-18001861 Msa0282200:five_prime_UTR
GTGGCAAGGCTTGTTGAGCT+TGG 0.460871 2_3:-18000390 Msa0282200:CDS
AAATGGTTAGGAATTGAAAC+TGG 0.465677 2_3:-18000465 Msa0282200:intron
AATGCAGAAGCTTTATTGGT+TGG 0.467018 2_3:-17999848 Msa0282200:CDS
TTTGATCATATGTATGATCA+TGG 0.480276 2_3:+17996947 None:intergenic
CCAACATTAATGAGTGGAGC+AGG 0.482594 2_3:-17997440 Msa0282200:three_prime_UTR
TCATCAAATTACAAACAGTC+AGG 0.484611 2_3:+18001935 None:intergenic
CAAACTACTTTCTTAGGCAG+TGG 0.493661 2_3:-17999238 Msa0282200:CDS
CATTGGAGATACCTGATAAG+AGG 0.498225 2_3:-17999186 Msa0282200:intron
TTAATTGTTACAAAATTGGT+TGG 0.498310 2_3:+17997005 None:intergenic
AAACATCAAACAAGCTGAGC+TGG 0.500801 2_3:+18001240 None:intergenic
GTCCATGCGTCAAGATCCTA+TGG 0.502369 2_3:-17998652 Msa0282200:CDS
TTCAGTTGGGTGGACCAAAT+GGG 0.503176 2_3:-17999905 Msa0282200:intron
TGTTTGAGAACAAATGAAAA+GGG 0.508018 2_3:-18001222 Msa0282200:five_prime_UTR
TTGAAAGTTATGCATGTCAA+TGG 0.509865 2_3:-17999622 Msa0282200:CDS
ACAGAACCACTCAGTTTGTA+GGG 0.512265 2_3:-18001860 Msa0282200:five_prime_UTR
TGCAACGACCATCGTAAGAA+AGG 0.515554 2_3:+17998571 None:intergenic
GCTGCAGCTTCACATTGAGC+AGG 0.516545 2_3:-17998886 Msa0282200:intron
AATGTACATGGTCGAGTTGA+GGG 0.516730 2_3:-17999881 Msa0282200:CDS
GTACTTGATAAATTGAAGAA+AGG 0.516995 2_3:-17996915 Msa0282200:three_prime_UTR
GGTATCTCCAATGTTGTAGC+AGG 0.519067 2_3:+17999196 None:intergenic
TACCTTGTGTTCAATAAGGC+AGG 0.520522 2_3:+17998239 None:intergenic
AAGGAGTTGATAGAATATAC+AGG 0.522584 2_3:+18001580 None:intergenic
GGTAAATTTGATGGAGCACT+AGG 0.522882 2_3:-17999667 Msa0282200:CDS
ATTTCGATGCAACAGAAACC+TGG 0.523035 2_3:-18001291 Msa0282200:five_prime_UTR
GACGATGATATCTGGGCGGC+TGG 0.523255 2_3:-17997217 Msa0282200:three_prime_UTR
ACAGCATGTGGTGGAGGTGG+CGG 0.525377 2_3:+18001792 None:intergenic
ATACGAGCAATTGATGATAC+AGG 0.526748 2_3:-17998327 Msa0282200:three_prime_UTR
GGATCTTGACGCATGGACAT+TGG 0.526811 2_3:+17998657 None:intergenic
TAGGACACTGTTGTTGATGC+TGG 0.528217 2_3:-17999688 Msa0282200:CDS
TGTTCACCTCAGCATGATGC+AGG 0.530008 2_3:-17997557 Msa0282200:intron
AAATCTTATTCGAAAATGGA+TGG 0.534286 2_3:-18000013 Msa0282200:CDS
CGAAAATGGATGGAAGATGC+TGG 0.534327 2_3:-18000003 Msa0282200:CDS
AGCTGGGCAGACAAGATTGA+AGG 0.535514 2_3:-17998814 Msa0282200:intron
GCAACAGAAACCTGGAAAAG+AGG 0.537275 2_3:-18001283 Msa0282200:five_prime_UTR
ACATATCTGATAAATTCGAT+TGG 0.541292 2_3:+17998278 None:intergenic
GGTCCTGTGCTTGAACAAGT+TGG 0.545766 2_3:-17998864 Msa0282200:CDS
TAGTAATGTCATTCCAGGCC+AGG 0.550343 2_3:-17998475 Msa0282200:CDS
AAATCTAAGGCGTCCTGTTG+AGG 0.552501 2_3:-17999590 Msa0282200:intron
CATGCACGAGTGAGAAATGC+TGG 0.553352 2_3:+18001836 None:intergenic
GACCAAATGGGAAATGTACA+TGG 0.563951 2_3:-17999893 Msa0282200:CDS
AGAACAGCATGTGGTGGAGG+TGG 0.565480 2_3:+18001789 None:intergenic
TGTGCTAGACGATGATATCT+GGG 0.573456 2_3:-17997224 Msa0282200:three_prime_UTR
CTGCAGCTTCACATTGAGCA+GGG 0.575143 2_3:-17998885 Msa0282200:intron
TTCCTGCCTTATTGAACACA+AGG 0.575456 2_3:-17998241 Msa0282200:intron
CAAATTATTCTCCTATCAAG+AGG 0.575584 2_3:-17997031 Msa0282200:three_prime_UTR
ATCTGTTTGGGGTTATGTCG+AGG 0.575812 2_3:-17999004 Msa0282200:intron
AAAGGCTCACAAGGTCATGC+CGG 0.576546 2_3:-17998687 Msa0282200:CDS
AGTATATGTGAACATTGTAA+GGG 0.576938 2_3:-17996743 Msa0282200:three_prime_UTR
CAGCTTATTCTGCACTCAAG+AGG 0.578224 2_3:-17997490 Msa0282200:three_prime_UTR
TGTTCAGCAGCAGCCACCAT+AGG 0.579164 2_3:+17998636 None:intergenic
GAAAGAACAGCATGTGGTGG+AGG 0.581921 2_3:+18001786 None:intergenic
TGGAGCAGGGCATGATGCCA+TGG 0.582009 2_3:-17997426 Msa0282200:three_prime_UTR
TCGTCTAGCACATCCTCTTG+TGG 0.582928 2_3:+17997235 None:intergenic
AAAGAGAATTAGCGAAAACT+CGG 0.583055 2_3:-18001718 Msa0282200:five_prime_UTR
GCCTCATCTCTTAGAATCTG+CGG 0.585167 2_3:+18000414 None:intergenic
AAACCAACTTGTTCAAGCAC+AGG 0.588436 2_3:+17998861 None:intergenic
ATCAATTGCTCGTATATCCA+CGG 0.588827 2_3:+17998335 None:intergenic
CCTGCTCCACTCATTAATGT+TGG 0.589437 2_3:+17997440 None:intergenic
GGAATGACATTACTAGCACT+TGG 0.589744 2_3:+17998483 None:intergenic
TTCTGCACTCAAGAGGATGG+AGG 0.594618 2_3:-17997483 Msa0282200:three_prime_UTR
GGCAATGTCTCACTTAACAA+AGG 0.607328 2_3:-17997405 Msa0282200:intron
ACTCTTCAGGATGTTTGCAG+AGG 0.608033 2_3:+17998595 None:intergenic
TTTATTGGTTGGATCTCACA+TGG 0.610664 2_3:-17999837 Msa0282200:intron
GAAAACAAAGAAGCACATGA+AGG 0.610863 2_3:+18001561 None:intergenic
TCCGCAGATTCTAAGAGATG+AGG 0.611127 2_3:-18000415 Msa0282200:CDS
AAGGCTTGTTGAGCTTGGAA+AGG 0.612966 2_3:-18000385 Msa0282200:intron
TTATTCTGCACTCAAGAGGA+TGG 0.613099 2_3:-17997486 Msa0282200:three_prime_UTR
AAATGTACATGGTCGAGTTG+AGG 0.615458 2_3:-17999882 Msa0282200:CDS
AATAAGATTTATCGCCCTCG+TGG 0.616684 2_3:+18000026 None:intergenic
GTGTCGTTAAAGGCATAGCT+GGG 0.619543 2_3:-17998830 Msa0282200:CDS
TCTGCACTCAAGAGGATGGA+GGG 0.619874 2_3:-17997482 Msa0282200:three_prime_UTR
GAACTCGATAGAAGCTGCGG+AGG 0.620673 2_3:-17999058 Msa0282200:CDS
ATGCTGTTTGTGCGATGTCG+CGG 0.620832 2_3:-17997274 Msa0282200:three_prime_UTR
ATGCCTTTAACGACACCAAG+TGG 0.623755 2_3:+17998837 None:intergenic
AACGTCTTTCAGGAATGTAA+CGG 0.625428 2_3:-17999100 Msa0282200:intron
CATAAGTCACTCTCCACAAG+AGG 0.625552 2_3:-17997248 Msa0282200:three_prime_UTR
CACCATAGGATCTTGACGCA+TGG 0.629370 2_3:+17998650 None:intergenic
GATTCTAAGAGATGAGGCAG+TGG 0.632621 2_3:-18000409 Msa0282200:CDS
GTCACGGTTAAAGGCTCACA+AGG 0.633455 2_3:-17998696 Msa0282200:CDS
ATGCTAGTGGCTATCTAGAG+AGG 0.636846 2_3:-18000068 Msa0282200:CDS
AGGAGAATAATTTGAGAACA+CGG 0.640264 2_3:+17997040 None:intergenic
GAAGTACCAACATTAATGAG+TGG 0.642265 2_3:-17997446 Msa0282200:three_prime_UTR
TAAGAGATGAGGCAGTGGCA+AGG 0.651166 2_3:-18000404 Msa0282200:CDS
GTTGCAGGTTACATATACCG+TGG 0.655260 2_3:-17998352 Msa0282200:intron
AGAGAACTCGATAGAAGCTG+CGG 0.656218 2_3:-17999061 Msa0282200:CDS
TATGATCCAAAATCTGTTTG+GGG 0.656816 2_3:-17999015 Msa0282200:CDS
TGTTAAGTGAGACATTGCCA+TGG 0.658188 2_3:+17997409 None:intergenic
CATCAAATTACAAACAGTCA+GGG 0.659874 2_3:+18001936 None:intergenic
CAACATTAATGAGTGGAGCA+GGG 0.661114 2_3:-17997439 Msa0282200:three_prime_UTR
AATTGATGATACAGGACGTG+AGG 0.664831 2_3:-17998319 Msa0282200:three_prime_UTR
ATTATTCTCCTATCAAGAGG+AGG 0.665582 2_3:-17997028 Msa0282200:three_prime_UTR
TGCCTTTAACGACACCAAGT+GGG 0.666563 2_3:+17998838 None:intergenic
GAAGAGTACCTTTCTTACGA+TGG 0.667691 2_3:-17998579 Msa0282200:CDS
GAACAGGTTAGCGATGCTAG+TGG 0.671726 2_3:-18000081 Msa0282200:intron
TTTGAGTCATGCATCCACGA+GGG 0.675190 2_3:-18000040 Msa0282200:CDS
CTGTTTGTGCGATGTCGCGG+AGG 0.676245 2_3:-17997271 Msa0282200:three_prime_UTR
ATTGAAAGAACAGCATGTGG+TGG 0.691465 2_3:+18001783 None:intergenic
CTGTTGGTGAAATATCAACA+TGG 0.708340 2_3:-17998506 Msa0282200:CDS
TGAATTGAAAGAACAGCATG+TGG 0.716001 2_3:+18001780 None:intergenic
CATGCGTCAAGATCCTATGG+TGG 0.726797 2_3:-17998649 Msa0282200:CDS
GCTGGACCCTACAAACTGAG+TGG 0.730023 2_3:+18001854 None:intergenic
GCTAGACGATGATATCTGGG+CGG 0.762672 2_3:-17997221 Msa0282200:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGTTATTTTTGATTTA+TGG - chr2_3:17996748-17996767 Msa0282200:three_prime_UTR 10.0%
!! TTATAAAATTCTTAGAATTT+AGG - chr2_3:18000591-18000610 Msa0282200:intron 10.0%
!! TATAAAATTCTTAGAATTTA+GGG - chr2_3:18000592-18000611 Msa0282200:intron 10.0%
!! TATAAATACTTATAGTAAAT+AGG - chr2_3:18001005-18001024 Msa0282200:intron 10.0%
!! ATAATCAAATGTTAATATAT+TGG - chr2_3:18001363-18001382 Msa0282200:intron 10.0%
!! AAATTTAATTGTTACAAAAT+TGG + chr2_3:18001709-18001728 None:intergenic 10.0%
!! TAAAAATAACATCTGAATAA+AGG - chr2_3:17997219-17997238 Msa0282200:three_prime_UTR 15.0%
!!! AACATGAAGTTTTTTTTTAT+GGG - chr2_3:18001934-18001953 Msa0282200:five_prime_UTR 15.0%
!! TTCATATATACCTTATTGTT+CGG - chr2_3:17996946-17996965 Msa0282200:three_prime_UTR 20.0%
!!! TTTGTTTTTGTTTTGATTCT+TGG - chr2_3:17997298-17997317 Msa0282200:intron 20.0%
!! TAAGAAAATTGTATGTATGT+TGG - chr2_3:17998121-17998140 Msa0282200:intron 20.0%
!! AACTACAGTATAAATATTGA+TGG + chr2_3:17998387-17998406 None:intergenic 20.0%
!!! GAGAAATTATTTAGAGTTAA+AGG + chr2_3:17998754-17998773 None:intergenic 20.0%
!! TTTATTTATAAACGTCTTTC+AGG - chr2_3:17999597-17999616 Msa0282200:CDS 20.0%
!! AAACAGCATATCATTAATAT+CGG + chr2_3:17999984-18000003 None:intergenic 20.0%
!! TTATGCTTAAAGAATATGTT+TGG + chr2_3:18000512-18000531 None:intergenic 20.0%
!!! AGTAAATAGGTATTTTTTGT+TGG - chr2_3:18001018-18001037 Msa0282200:intron 20.0%
!! TATTTGTAGCATGTAATTAT+AGG - chr2_3:18001579-18001598 Msa0282200:five_prime_UTR 20.0%
!! TTAATTGTTACAAAATTGGT+TGG + chr2_3:18001705-18001724 None:intergenic 20.0%
!!! CAACATGAAGTTTTTTTTTA+TGG - chr2_3:18001933-18001952 Msa0282200:five_prime_UTR 20.0%
!! AATTCTCTTTTCAATCTCAA+AGG + chr2_3:17996979-17996998 None:intergenic 25.0%
! ACAAAGAAACATGAAAGAAA+AGG + chr2_3:17997182-17997201 None:intergenic 25.0%
!! AATGTTAAGATACCCTTTTA+AGG - chr2_3:17997333-17997352 Msa0282200:intron 25.0%
!! TTTTGCTAACATCATAGAAA+AGG + chr2_3:17997368-17997387 None:intergenic 25.0%
! ATGTTTGAGAACAAATGAAA+AGG - chr2_3:17997484-17997503 Msa0282200:three_prime_UTR 25.0%
! TGTTTGAGAACAAATGAAAA+GGG - chr2_3:17997485-17997504 Msa0282200:three_prime_UTR 25.0%
!! AGTTACTAGTTTCTGAAAAT+TGG - chr2_3:17998075-17998094 Msa0282200:intron 25.0%
!!! TATGTTGGCTTAATTTAACT+TGG - chr2_3:17998136-17998155 Msa0282200:intron 25.0%
!!! CTTAATTTAACTTGGAAGTA+GGG - chr2_3:17998144-17998163 Msa0282200:intron 25.0%
!!! TTAATTTAACTTGGAAGTAG+GGG - chr2_3:17998145-17998164 Msa0282200:intron 25.0%
! AAACTGGAGATTTAGAAAAA+CGG - chr2_3:17998258-17998277 Msa0282200:three_prime_UTR 25.0%
! CATTGAGTAAATATCCAAAT+TGG - chr2_3:17998414-17998433 Msa0282200:intron 25.0%
! TTACAATTTCAAGACCAATT+TGG + chr2_3:17998431-17998450 None:intergenic 25.0%
! TACATTATCGATGATTTGAA+AGG - chr2_3:17998472-17998491 Msa0282200:CDS 25.0%
!! TGATCAAAATTTTGCATTTC+AGG + chr2_3:17998500-17998519 None:intergenic 25.0%
!! ATTTGTTACATTGTTCTTAG+TGG - chr2_3:17998585-17998604 Msa0282200:CDS 25.0%
! CGATAAATCTTATTCGAAAA+TGG - chr2_3:17998690-17998709 Msa0282200:CDS 25.0%
! AAATCTTATTCGAAAATGGA+TGG - chr2_3:17998694-17998713 Msa0282200:CDS 25.0%
!!! ATGAGTATGTTATTTTCAGT+TGG - chr2_3:17998788-17998807 Msa0282200:intron 25.0%
!!! TGAGTATGTTATTTTCAGTT+GGG - chr2_3:17998789-17998808 Msa0282200:intron 25.0%
! AGATTTCAAACTACTTTCTT+AGG - chr2_3:17999463-17999482 Msa0282200:intron 25.0%
! TTTCAAATGCTTAAACAAGT+TGG + chr2_3:17999930-17999949 None:intergenic 25.0%
! ACATATCTGATAAATTCGAT+TGG + chr2_3:18000432-18000451 None:intergenic 25.0%
! GAAATGTGTTTATAAGTGAT+GGG + chr2_3:18000659-18000678 None:intergenic 25.0%
! AAATGTGTTTAGATAAGTAG+TGG + chr2_3:18000848-18000867 None:intergenic 25.0%
! TACTTATCTAAACACATTTC+AGG - chr2_3:18000849-18000868 Msa0282200:intron 25.0%
! ACTCTTAATAAAAACGAATG+TGG - chr2_3:18000893-18000912 Msa0282200:intron 25.0%
!! TGTTTTATCCTTTTAGATTG+AGG + chr2_3:18000942-18000961 None:intergenic 25.0%
!!! AAATAGGTATTTTTTGTTGG+TGG - chr2_3:18001021-18001040 Msa0282200:intron 25.0%
!!! AATAGGTATTTTTTGTTGGT+GGG - chr2_3:18001022-18001041 Msa0282200:intron 25.0%
!! TAGATTTTCCAGAAATGATA+AGG + chr2_3:18001524-18001543 None:intergenic 25.0%
! TTTGATCATATGTATGATCA+TGG + chr2_3:18001763-18001782 None:intergenic 25.0%
! GTACTTGATAAATTGAAGAA+AGG - chr2_3:18001792-18001811 Msa0282200:five_prime_UTR 25.0%
! AAATGTAAGCATGAATAAAC+TGG + chr2_3:18001827-18001846 None:intergenic 25.0%
! AAGTATATGTGAACATTGTA+AGG - chr2_3:18001963-18001982 Msa0282200:five_prime_UTR 25.0%
CATCAAATTACAAACAGTCA+GGG + chr2_3:17996774-17996793 None:intergenic 30.0%
TCATCAAATTACAAACAGTC+AGG + chr2_3:17996775-17996794 None:intergenic 30.0%
AAAGAGAATTAGCGAAAACT+CGG - chr2_3:17996989-17997008 Msa0282200:three_prime_UTR 30.0%
!! AAGGAGTTGATAGAATATAC+AGG + chr2_3:17997130-17997149 None:intergenic 30.0%
TTGATTCTTGGAATCTTTGA+TGG - chr2_3:17997310-17997329 Msa0282200:intron 30.0%
AGGAATCTGAATCCTTAAAA+GGG + chr2_3:17997348-17997367 None:intergenic 30.0%
AAGGAATCTGAATCCTTAAA+AGG + chr2_3:17997349-17997368 None:intergenic 30.0%
ATATAATCACATGTGTCATC+TGG + chr2_3:17997774-17997793 None:intergenic 30.0%
TGTTGAATATTAGTTCGACT+TGG - chr2_3:17997891-17997910 Msa0282200:intron 30.0%
ACCTTGGTTCAAATTGTATT+TGG - chr2_3:17998017-17998036 Msa0282200:intron 30.0%
TCCAAATACAATTTGAACCA+AGG + chr2_3:17998021-17998040 None:intergenic 30.0%
! GTTTCTGAAAATTGGTATAC+AGG - chr2_3:17998083-17998102 Msa0282200:intron 30.0%
! AAATTGGTATACAGGTTTTG+TGG - chr2_3:17998091-17998110 Msa0282200:intron 30.0%
!! GCTTAATTTAACTTGGAAGT+AGG - chr2_3:17998143-17998162 Msa0282200:intron 30.0%
! TTCAATTCCTAACCATTTTC+AGG + chr2_3:17998240-17998259 None:intergenic 30.0%
AAATGGTTAGGAATTGAAAC+TGG - chr2_3:17998242-17998261 Msa0282200:three_prime_UTR 30.0%
AACTGGAGATTTAGAAAAAC+GGG - chr2_3:17998259-17998278 Msa0282200:three_prime_UTR 30.0%
AAAGATGAGTTCTTGAAGTT+AGG + chr2_3:17998350-17998369 None:intergenic 30.0%
TTGTTCTTAGTGGTTAATGT+TGG - chr2_3:17998595-17998614 Msa0282200:CDS 30.0%
TTAGAGTTAAAGGAGTTAGA+AGG + chr2_3:17998744-17998763 None:intergenic 30.0%
GTTTCATTCAATGTTAGTTG+AGG + chr2_3:17998915-17998934 None:intergenic 30.0%
AACCATTTCTTGACAGTTAA+TGG - chr2_3:17998937-17998956 Msa0282200:intron 30.0%
TACCATTAACTGTCAAGAAA+TGG + chr2_3:17998942-17998961 None:intergenic 30.0%
!! ACTTTGATGGGTACTTATTT+TGG - chr2_3:17998995-17999014 Msa0282200:intron 30.0%
TTGAAAGTTATGCATGTCAA+TGG - chr2_3:17999085-17999104 Msa0282200:CDS 30.0%
TAATGATATAGTCTGATGCA+CGG - chr2_3:17999182-17999201 Msa0282200:intron 30.0%
CTCTTGTATGTGTATTCATT+TGG - chr2_3:17999275-17999294 Msa0282200:CDS 30.0%
ATGATTCATTGAAAGGAATC+GGG + chr2_3:17999341-17999360 None:intergenic 30.0%
GATGATTCATTGAAAGGAAT+CGG + chr2_3:17999342-17999361 None:intergenic 30.0%
CAAGATGATGATTCATTGAA+AGG + chr2_3:17999348-17999367 None:intergenic 30.0%
CTTTCAATGAATCATCATCT+TGG - chr2_3:17999346-17999365 Msa0282200:intron 30.0%
!!! GAATGATGCCACTTTTTTAT+TGG - chr2_3:17999377-17999396 Msa0282200:intron 30.0%
AGATGACACCAATAAAAAAG+TGG + chr2_3:17999388-17999407 None:intergenic 30.0%
! ATTGCATTTTGTGATGAAGA+GGG - chr2_3:17999436-17999455 Msa0282200:intron 30.0%
! TATTTTACCTGCTACAACAT+TGG - chr2_3:17999504-17999523 Msa0282200:intron 30.0%
!!! AGAGGTATCAAGGAAATTTT+TGG - chr2_3:17999539-17999558 Msa0282200:intron 30.0%
AGTATGATCCAAAATCTGTT+TGG - chr2_3:17999690-17999709 Msa0282200:intron 30.0%
GTATGATCCAAAATCTGTTT+GGG - chr2_3:17999691-17999710 Msa0282200:intron 30.0%
TATGATCCAAAATCTGTTTG+GGG - chr2_3:17999692-17999711 Msa0282200:intron 30.0%
!!! CGGATTTCAGTTCTTTTTTA+CGG + chr2_3:17999964-17999983 None:intergenic 30.0%
!!! AATGATATGCTGTTTTGTGT+AGG - chr2_3:17999989-18000008 Msa0282200:intron 30.0%
TGCTGAACAAATTGTACTTA+TGG - chr2_3:18000085-18000104 Msa0282200:intron 30.0%
! TGTGATGATAATGTGATGAT+TGG - chr2_3:18000333-18000352 Msa0282200:intron 30.0%
GCTTAAAGAATATGTTTGGT+CGG + chr2_3:18000508-18000527 None:intergenic 30.0%
ATACCTTATCCTTACAAAAC+CGG - chr2_3:18000616-18000635 Msa0282200:intron 30.0%
GGAAATGTGTTTATAAGTGA+TGG + chr2_3:18000660-18000679 None:intergenic 30.0%
! GTTTATCCAAGACACATTTT+AGG + chr2_3:18000754-18000773 None:intergenic 30.0%
GTCTCAAATTTGATGAGATA+AGG + chr2_3:18000875-18000894 None:intergenic 30.0%
!!! GTTTGTTTTAGATCTTGTCT+AGG - chr2_3:18001079-18001098 Msa0282200:intron 30.0%
!! AGGTTTTTCAGTTTGTTTTC+TGG - chr2_3:18001099-18001118 Msa0282200:intron 30.0%
TTAGAATATGACAACGTATG+AGG - chr2_3:18001394-18001413 Msa0282200:intron 30.0%
TTTAGCAACCTTATCATTTC+TGG - chr2_3:18001513-18001532 Msa0282200:intron 30.0%
AGGAGAATAATTTGAGAACA+CGG + chr2_3:18001670-18001689 None:intergenic 30.0%
CAAATTATTCTCCTATCAAG+AGG - chr2_3:18001676-18001695 Msa0282200:five_prime_UTR 30.0%
TGAATTGAAAGAACAGCATG+TGG + chr2_3:17996930-17996949 None:intergenic 35.0%
! GAAAACAAAGAAGCACATGA+AGG + chr2_3:17997149-17997168 None:intergenic 35.0%
!!! TCATGTGCTTCTTTGTTTTC+TGG - chr2_3:17997149-17997168 Msa0282200:three_prime_UTR 35.0%
AGTCAAAGCAAGAACAACAA+TGG + chr2_3:17997541-17997560 None:intergenic 35.0%
! TCTTGCTTTGACTCTTTTTC+TGG - chr2_3:17997548-17997567 Msa0282200:three_prime_UTR 35.0%
!!! GTTGTGATGTGTGTTTTTTG+TGG - chr2_3:17997688-17997707 Msa0282200:intron 35.0%
ACTTGGATGTCTTCAAATCA+TGG - chr2_3:17997908-17997927 Msa0282200:intron 35.0%
GCTAAATGCTTACCTGAAAA+TGG - chr2_3:17998225-17998244 Msa0282200:intron 35.0%
ATGCTTACCTGAAAATGGTT+AGG - chr2_3:17998230-17998249 Msa0282200:intron 35.0%
ACTGGAGATTTAGAAAAACG+GGG - chr2_3:17998260-17998279 Msa0282200:three_prime_UTR 35.0%
! CCAGCAACATTCACATTTTA+TGG + chr2_3:17998563-17998582 None:intergenic 35.0%
CCATAAAATGTGAATGTTGC+TGG - chr2_3:17998560-17998579 Msa0282200:CDS 35.0%
TTAGTGGTTAATGTTGGTGT+TGG - chr2_3:17998601-17998620 Msa0282200:CDS 35.0%
!!! GTATGTTATTTTCAGTTGGG+TGG - chr2_3:17998792-17998811 Msa0282200:intron 35.0%
! TGCAAATGCAGAAGCTTTAT+TGG - chr2_3:17998855-17998874 Msa0282200:CDS 35.0%
!! AATGCAGAAGCTTTATTGGT+TGG - chr2_3:17998859-17998878 Msa0282200:CDS 35.0%
! TTTATTGGTTGGATCTCACA+TGG - chr2_3:17998870-17998889 Msa0282200:CDS 35.0%
ATTCATGTCTCTGACTTTGA+TGG - chr2_3:17998982-17999001 Msa0282200:intron 35.0%
TTCATGTCTCTGACTTTGAT+GGG - chr2_3:17998983-17999002 Msa0282200:intron 35.0%
!!! GATGGGTACTTATTTTGGTT+AGG - chr2_3:17999000-17999019 Msa0282200:intron 35.0%
GTTGATGCTGGTAAATTTGA+TGG - chr2_3:17999031-17999050 Msa0282200:CDS 35.0%
ATGGAAAGCTGCAAAATCTA+AGG - chr2_3:17999104-17999123 Msa0282200:intron 35.0%
TAGTGAATTGGGATTCAAGA+TGG + chr2_3:17999310-17999329 None:intergenic 35.0%
AATCATCATCTTGGAAATGC+TGG - chr2_3:17999355-17999374 Msa0282200:intron 35.0%
TCATGTGATCTAATCTTTGC+AGG - chr2_3:17999411-17999430 Msa0282200:intron 35.0%
! GATTGCATTTTGTGATGAAG+AGG - chr2_3:17999435-17999454 Msa0282200:intron 35.0%
!! ATACCTGATAAGAGGTATCA+AGG - chr2_3:17999529-17999548 Msa0282200:intron 35.0%
TTTCCTTGATACCTCTTATC+AGG + chr2_3:17999535-17999554 None:intergenic 35.0%
AACGTCTTTCAGGAATGTAA+CGG - chr2_3:17999607-17999626 Msa0282200:CDS 35.0%
! ACATAACCCCAAACAGATTT+TGG + chr2_3:17999701-17999720 None:intergenic 35.0%
TTTGCGTTAGTCGTTTATAG+TGG - chr2_3:17999737-17999756 Msa0282200:intron 35.0%
TAGTCGTTTATAGTGGTGTT+TGG - chr2_3:17999744-17999763 Msa0282200:intron 35.0%
AGTTCACTTGTTTGTACTGT+TGG - chr2_3:18000185-18000204 Msa0282200:intron 35.0%
! CTGTTGGTGAAATATCAACA+TGG - chr2_3:18000201-18000220 Msa0282200:intron 35.0%
TTTCCAAAAAGCTGTTGATC+TGG - chr2_3:18000266-18000285 Msa0282200:intron 35.0%
! ATAATGTGATGATTGGTTGC+AGG - chr2_3:18000340-18000359 Msa0282200:intron 35.0%
ATCAATTGCTCGTATATCCA+CGG + chr2_3:18000375-18000394 None:intergenic 35.0%
! ATACGAGCAATTGATGATAC+AGG - chr2_3:18000380-18000399 Msa0282200:intron 35.0%
ACCATACCTTGTGTTCAATA+AGG + chr2_3:18000475-18000494 None:intergenic 35.0%
TGATGTCTTTCTAAGTGAGA+GGG - chr2_3:18000546-18000565 Msa0282200:intron 35.0%
!! AAACCGGTTTTGTAAGGATA+AGG + chr2_3:18000622-18000641 None:intergenic 35.0%
GTCTCACGTAGTATGAAATA+GGG + chr2_3:18000686-18000705 None:intergenic 35.0%
AGTCTCACGTAGTATGAAAT+AGG + chr2_3:18000687-18000706 None:intergenic 35.0%
!! CCAGTTTTGTAGAGATTAGT+TGG + chr2_3:18000806-18000825 None:intergenic 35.0%
CCAACTAATCTCTACAAAAC+TGG - chr2_3:18000803-18000822 Msa0282200:intron 35.0%
! ACAAGATCTAAAACAAACCC+AGG + chr2_3:18001077-18001096 None:intergenic 35.0%
GGTGAACACAGAAAAATCAT+TGG + chr2_3:18001138-18001157 None:intergenic 35.0%
! GAAGTACCAACATTAATGAG+TGG - chr2_3:18001261-18001280 Msa0282200:five_prime_UTR 35.0%
AATTTGAGAACACGGCTATA+AGG + chr2_3:18001662-18001681 None:intergenic 35.0%
ATTATTCTCCTATCAAGAGG+AGG - chr2_3:18001679-18001698 Msa0282200:five_prime_UTR 35.0%
ACAGAACCACTCAGTTTGTA+GGG - chr2_3:17996847-17996866 Msa0282200:three_prime_UTR 40.0%
ATTGAAAGAACAGCATGTGG+TGG + chr2_3:17996927-17996946 None:intergenic 40.0%
AGGAACAGAACCGAACAATA+AGG + chr2_3:17996959-17996978 None:intergenic 40.0%
ATTTCGATGCAACAGAAACC+TGG - chr2_3:17997416-17997435 Msa0282200:three_prime_UTR 40.0%
AAACATCAAACAAGCTGAGC+TGG + chr2_3:17997470-17997489 None:intergenic 40.0%
!! TTGTTAGCTCTGTAGCACTA+AGG - chr2_3:17997725-17997744 Msa0282200:intron 40.0%
GGCTTCATGGATGTTTATGA+TGG - chr2_3:17997862-17997881 Msa0282200:intron 40.0%
! CGTACGGCAATTTAAAACCT+TGG - chr2_3:17998001-17998020 Msa0282200:intron 40.0%
TCACTCTCTTATTGCATTGC+TGG + chr2_3:17998053-17998072 None:intergenic 40.0%
!! AATGTTGGTGTTGGATGAAC+AGG - chr2_3:17998610-17998629 Msa0282200:CDS 40.0%
AATAAGATTTATCGCCCTCG+TGG + chr2_3:17998684-17998703 None:intergenic 40.0%
GACCAAATGGGAAATGTACA+TGG - chr2_3:17998814-17998833 Msa0282200:intron 40.0%
GACCATGTACATTTCCCATT+TGG + chr2_3:17998819-17998838 None:intergenic 40.0%
! AAATGTACATGGTCGAGTTG+AGG - chr2_3:17998825-17998844 Msa0282200:CDS 40.0%
!! AATGTACATGGTCGAGTTGA+GGG - chr2_3:17998826-17998845 Msa0282200:CDS 40.0%
! GGTAAATTTGATGGAGCACT+AGG - chr2_3:17999040-17999059 Msa0282200:CDS 40.0%
GGGATTCAGCATAGTGAATT+GGG + chr2_3:17999321-17999340 None:intergenic 40.0%
CAAACTACTTTCTTAGGCAG+TGG - chr2_3:17999469-17999488 Msa0282200:intron 40.0%
CATTGGAGATACCTGATAAG+AGG - chr2_3:17999521-17999540 Msa0282200:intron 40.0%
AGCTGCAGCACATAAGAAAT+GGG + chr2_3:17999810-17999829 None:intergenic 40.0%
AAGCTGCAGCACATAAGAAA+TGG + chr2_3:17999811-17999830 None:intergenic 40.0%
! AAACCAACTTGTTCAAGCAC+AGG + chr2_3:17999849-17999868 None:intergenic 40.0%
!!! ATGCTGTTTTGTGTAGGTCA+CGG - chr2_3:17999995-18000014 Msa0282200:CDS 40.0%
TTTGTGTAGGTCACGGTTAA+AGG - chr2_3:18000002-18000021 Msa0282200:CDS 40.0%
!! TCGTAAGAAAGGTACTCTTC+AGG + chr2_3:18000128-18000147 None:intergenic 40.0%
!! GAAGAGTACCTTTCTTACGA+TGG - chr2_3:18000128-18000147 Msa0282200:intron 40.0%
GGAATGACATTACTAGCACT+TGG + chr2_3:18000227-18000246 None:intergenic 40.0%
AGTGCTAGTAATGTCATTCC+AGG - chr2_3:18000227-18000246 Msa0282200:intron 40.0%
! TCACCAGATCAACAGCTTTT+TGG + chr2_3:18000272-18000291 None:intergenic 40.0%
TTGATCTGGTGATCTTCAAG+TGG - chr2_3:18000280-18000299 Msa0282200:intron 40.0%
! AATTGATGATACAGGACGTG+AGG - chr2_3:18000388-18000407 Msa0282200:CDS 40.0%
! TTCCTGCCTTATTGAACACA+AGG - chr2_3:18000466-18000485 Msa0282200:intron 40.0%
TACCTTGTGTTCAATAAGGC+AGG + chr2_3:18000471-18000490 None:intergenic 40.0%
! GCCTTATTGAACACAAGGTA+TGG - chr2_3:18000471-18000490 Msa0282200:intron 40.0%
CTGATGTCTTTCTAAGTGAG+AGG - chr2_3:18000545-18000564 Msa0282200:intron 40.0%
!! CCTTACAAACCGGTTTTGTA+AGG + chr2_3:18000628-18000647 None:intergenic 40.0%
!! CCTTACAAAACCGGTTTGTA+AGG - chr2_3:18000625-18000644 Msa0282200:intron 40.0%
ACGTAGTATGAAATAGGGAC+TGG + chr2_3:18000681-18000700 None:intergenic 40.0%
!! CCAAGACACATTTTAGGTCT+TGG + chr2_3:18000748-18000767 None:intergenic 40.0%
CCAAGACCTAAAATGTGTCT+TGG - chr2_3:18000745-18000764 Msa0282200:intron 40.0%
!! CTCTACAAAACTGGCTTGTA+AGG - chr2_3:18000812-18000831 Msa0282200:intron 40.0%
AGGTCGAACCTCAATCTAAA+AGG - chr2_3:18000931-18000950 Msa0282200:intron 40.0%
ACACTACTTACCACTATGCT+AGG - chr2_3:18000962-18000981 Msa0282200:intron 40.0%
CTAAAACAAACCCAGGCATA+AGG + chr2_3:18001070-18001089 None:intergenic 40.0%
TTCAGCTGTGAACTTAGTTC+TGG + chr2_3:18001192-18001211 None:intergenic 40.0%
TTATTCTGCACTCAAGAGGA+TGG - chr2_3:18001221-18001240 Msa0282200:five_prime_UTR 40.0%
CAACATTAATGAGTGGAGCA+GGG - chr2_3:18001268-18001287 Msa0282200:five_prime_UTR 40.0%
TGTTAAGTGAGACATTGCCA+TGG + chr2_3:18001301-18001320 None:intergenic 40.0%
GGCAATGTCTCACTTAACAA+AGG - chr2_3:18001302-18001321 Msa0282200:intron 40.0%
CAACGTATGAGGATTTGAAC+AGG - chr2_3:18001405-18001424 Msa0282200:intron 40.0%
GTATGAGGATTTGAACAGGT+GGG - chr2_3:18001409-18001428 Msa0282200:intron 40.0%
ATGTGCTAGACGATGATATC+TGG - chr2_3:18001482-18001501 Msa0282200:intron 40.0%
TGTGCTAGACGATGATATCT+GGG - chr2_3:18001483-18001502 Msa0282200:intron 40.0%
CTTATGCTGCAAGCTGTAAT+AGG - chr2_3:18001871-18001890 Msa0282200:five_prime_UTR 40.0%
CACAGAACCACTCAGTTTGT+AGG - chr2_3:17996846-17996865 Msa0282200:three_prime_UTR 45.0%
TCATAGTGTGTGTGTGTGTG+TGG + chr2_3:17997073-17997092 None:intergenic 45.0%
GCAACAGAAACCTGGAAAAG+AGG - chr2_3:17997424-17997443 Msa0282200:three_prime_UTR 45.0%
TCACATGTGTCATCTGGTGT+TGG + chr2_3:17997768-17997787 None:intergenic 45.0%
! CGATGTGTCATTATCGTGTC+CGG - chr2_3:17997823-17997842 Msa0282200:intron 45.0%
GCTTAAATTGCAGCTGCGTA+CGG - chr2_3:17997985-17998004 Msa0282200:intron 45.0%
! TCCGCAGATTCTAAGAGATG+AGG - chr2_3:17998292-17998311 Msa0282200:three_prime_UTR 45.0%
GCCTCATCTCTTAGAATCTG+CGG + chr2_3:17998296-17998315 None:intergenic 45.0%
! GATTCTAAGAGATGAGGCAG+TGG - chr2_3:17998298-17998317 Msa0282200:three_prime_UTR 45.0%
!! AAGGCTTGTTGAGCTTGGAA+AGG - chr2_3:17998322-17998341 Msa0282200:three_prime_UTR 45.0%
ATGCTAGTGGCTATCTAGAG+AGG - chr2_3:17998639-17998658 Msa0282200:CDS 45.0%
!! TTTTGAGTCATGCATCCACG+AGG - chr2_3:17998666-17998685 Msa0282200:CDS 45.0%
TTTGAGTCATGCATCCACGA+GGG - chr2_3:17998667-17998686 Msa0282200:CDS 45.0%
CGAAAATGGATGGAAGATGC+TGG - chr2_3:17998704-17998723 Msa0282200:intron 45.0%
TTTCAGTTGGGTGGACCAAA+TGG - chr2_3:17998801-17998820 Msa0282200:intron 45.0%
TTCAGTTGGGTGGACCAAAT+GGG - chr2_3:17998802-17998821 Msa0282200:intron 45.0%
TAGGACACTGTTGTTGATGC+TGG - chr2_3:17999019-17999038 Msa0282200:CDS 45.0%
! AAATCTAAGGCGTCCTGTTG+AGG - chr2_3:17999117-17999136 Msa0282200:intron 45.0%
CGGGATTCAGCATAGTGAAT+TGG + chr2_3:17999322-17999341 None:intergenic 45.0%
GGTATCTCCAATGTTGTAGC+AGG + chr2_3:17999514-17999533 None:intergenic 45.0%
AGAGAACTCGATAGAAGCTG+CGG - chr2_3:17999646-17999665 Msa0282200:CDS 45.0%
! ATCTGTTTGGGGTTATGTCG+AGG - chr2_3:17999703-17999722 Msa0282200:intron 45.0%
!! GAACAAGTTGGTTTCCCACT+TGG - chr2_3:17999855-17999874 Msa0282200:CDS 45.0%
!! TTCCCACTTGGTGTCGTTAA+AGG - chr2_3:17999867-17999886 Msa0282200:CDS 45.0%
TGCCTTTAACGACACCAAGT+GGG + chr2_3:17999872-17999891 None:intergenic 45.0%
ATGCCTTTAACGACACCAAG+TGG + chr2_3:17999873-17999892 None:intergenic 45.0%
! GTGTCGTTAAAGGCATAGCT+GGG - chr2_3:17999877-17999896 Msa0282200:CDS 45.0%
CATGGACATTGGAACAGTTC+CGG + chr2_3:18000042-18000061 None:intergenic 45.0%
ACTCTTCAGGATGTTTGCAG+AGG + chr2_3:18000115-18000134 None:intergenic 45.0%
TGCAACGACCATCGTAAGAA+AGG + chr2_3:18000139-18000158 None:intergenic 45.0%
TAGTAATGTCATTCCAGGCC+AGG - chr2_3:18000232-18000251 Msa0282200:intron 45.0%
! TTGGAAATTTGTCGCTTGCC+TGG + chr2_3:18000253-18000272 None:intergenic 45.0%
GTTGCAGGTTACATATACCG+TGG - chr2_3:18000355-18000374 Msa0282200:intron 45.0%
GAGGGAGTAACAGAAAAGTC+AGG - chr2_3:18000564-18000583 Msa0282200:intron 45.0%
ACTGCTCTCACATTCAGAAC+TGG - chr2_3:18000715-18000734 Msa0282200:intron 45.0%
AACTAGCATGCCTAGCATAG+TGG + chr2_3:18000975-18000994 None:intergenic 45.0%
! TTGTTGGTGGGCCTAAAGTA+AGG - chr2_3:18001034-18001053 Msa0282200:intron 45.0%
TGGGCCTAAAGTAAGGACTT+GGG - chr2_3:18001041-18001060 Msa0282200:intron 45.0%
AAACAAACCCAGGCATAAGG+TGG + chr2_3:18001067-18001086 None:intergenic 45.0%
CAGCTTATTCTGCACTCAAG+AGG - chr2_3:18001217-18001236 Msa0282200:five_prime_UTR 45.0%
CCTGCTCCACTCATTAATGT+TGG + chr2_3:18001270-18001289 None:intergenic 45.0%
CCAACATTAATGAGTGGAGC+AGG - chr2_3:18001267-18001286 Msa0282200:five_prime_UTR 45.0%
CGTATGAGGATTTGAACAGG+TGG - chr2_3:18001408-18001427 Msa0282200:intron 45.0%
CATAAGTCACTCTCCACAAG+AGG - chr2_3:18001459-18001478 Msa0282200:intron 45.0%
!! ATAAAAAAAAAAAAAAAAAG+TGG - chr2_3:17997622-17997641 Msa0282200:intron 5.0%
CATGCACGAGTGAGAAATGC+TGG + chr2_3:17996874-17996893 None:intergenic 50.0%
GAAAGAACAGCATGTGGTGG+AGG + chr2_3:17996924-17996943 None:intergenic 50.0%
TGTGTGTGTGTGTGTGGCTA+TGG + chr2_3:17997067-17997086 None:intergenic 50.0%
! TTCAGGTACGCCTCTTTTCC+AGG + chr2_3:17997437-17997456 None:intergenic 50.0%
!! GAGCTGGCGTTTGTTGATTC+AGG + chr2_3:17997454-17997473 None:intergenic 50.0%
! CATGTGTCATCTGGTGTTGG+AGG + chr2_3:17997765-17997784 None:intergenic 50.0%
TAAGAGATGAGGCAGTGGCA+AGG - chr2_3:17998303-17998322 Msa0282200:three_prime_UTR 50.0%
GAACAGGTTAGCGATGCTAG+TGG - chr2_3:17998626-17998645 Msa0282200:CDS 50.0%
CTTGACACACTGACCTCAAC+AGG + chr2_3:17999133-17999152 None:intergenic 50.0%
AGGTCAGTGTGTCAAGCAAC+TGG - chr2_3:17999137-17999156 Msa0282200:intron 50.0%
!! TTAGGCAGTGGTGCTATAGC+TGG - chr2_3:17999481-17999500 Msa0282200:intron 50.0%
CTGCAGCTTCACATTGAGCA+GGG - chr2_3:17999822-17999841 Msa0282200:intron 50.0%
GGTCCTGTGCTTGAACAAGT+TGG - chr2_3:17999843-17999862 Msa0282200:CDS 50.0%
!! GGTGTCGTTAAAGGCATAGC+TGG - chr2_3:17999876-17999895 Msa0282200:CDS 50.0%
AGCTGGGCAGACAAGATTGA+AGG - chr2_3:17999893-17999912 Msa0282200:CDS 50.0%
GTCACGGTTAAAGGCTCACA+AGG - chr2_3:18000011-18000030 Msa0282200:CDS 50.0%
AAAGGCTCACAAGGTCATGC+CGG - chr2_3:18000020-18000039 Msa0282200:CDS 50.0%
GGATCTTGACGCATGGACAT+TGG + chr2_3:18000053-18000072 None:intergenic 50.0%
GTCCATGCGTCAAGATCCTA+TGG - chr2_3:18000055-18000074 Msa0282200:CDS 50.0%
CACCATAGGATCTTGACGCA+TGG + chr2_3:18000060-18000079 None:intergenic 50.0%
CATGCGTCAAGATCCTATGG+TGG - chr2_3:18000058-18000077 Msa0282200:CDS 50.0%
GGCAGAGAGACCTTACAAAC+CGG + chr2_3:18000638-18000657 None:intergenic 50.0%
!! CAAAACTGGCTTGTAAGGCG+AGG - chr2_3:18000817-18000836 Msa0282200:intron 50.0%
GTGGGCCTAAAGTAAGGACT+TGG - chr2_3:18001040-18001059 Msa0282200:intron 50.0%
GTGGCCCAAGTCCTTACTTT+AGG + chr2_3:18001048-18001067 None:intergenic 50.0%
TGTTCACCTCAGCATGATGC+AGG - chr2_3:18001150-18001169 Msa0282200:intron 50.0%
TTCTGCACTCAAGAGGATGG+AGG - chr2_3:18001224-18001243 Msa0282200:five_prime_UTR 50.0%
TCTGCACTCAAGAGGATGGA+GGG - chr2_3:18001225-18001244 Msa0282200:five_prime_UTR 50.0%
! ATGCTGTTTGTGCGATGTCG+CGG - chr2_3:18001433-18001452 Msa0282200:intron 50.0%
TCGTCTAGCACATCCTCTTG+TGG + chr2_3:18001475-18001494 None:intergenic 50.0%
GCTAGACGATGATATCTGGG+CGG - chr2_3:18001486-18001505 Msa0282200:intron 50.0%
!! TTGGTTGGCCTCCTCTTGAT+AGG + chr2_3:18001690-18001709 None:intergenic 50.0%
GCTGGACCCTACAAACTGAG+TGG + chr2_3:17996856-17996875 None:intergenic 55.0%
! AGAACAGCATGTGGTGGAGG+TGG + chr2_3:17996921-17996940 None:intergenic 55.0%
! CATCTGGTGTTGGAGGACAC+AGG + chr2_3:17997758-17997777 None:intergenic 55.0%
! TCCGGTGTCTGTGTCACTCA+GGG - chr2_3:17997841-17997860 Msa0282200:intron 55.0%
! CTGTGTCACTCAGGGCTTCA+TGG - chr2_3:17997849-17997868 Msa0282200:intron 55.0%
!! GTGGCAAGGCTTGTTGAGCT+TGG - chr2_3:17998317-17998336 Msa0282200:three_prime_UTR 55.0%
GAACTCGATAGAAGCTGCGG+AGG - chr2_3:17999649-17999668 Msa0282200:CDS 55.0%
GCTGCAGCTTCACATTGAGC+AGG - chr2_3:17999821-17999840 Msa0282200:intron 55.0%
TGTTCAGCAGCAGCCACCAT+AGG + chr2_3:18000074-18000093 None:intergenic 55.0%
! AATTTGTCGCTTGCCTGGCC+TGG + chr2_3:18000248-18000267 None:intergenic 55.0%
TGTGGCTTCTGTTCCAGCAG+AGG - chr2_3:18000911-18000930 Msa0282200:intron 55.0%
GATTGAGGTTCGACCTCTGC+TGG + chr2_3:18000927-18000946 None:intergenic 55.0%
ACTTGGGCCACCTTATGCCT+GGG - chr2_3:18001057-18001076 Msa0282200:intron 55.0%
ACAGCACCTGCATCATGCTG+AGG + chr2_3:18001159-18001178 None:intergenic 55.0%
! ACAGCATGTGGTGGAGGTGG+CGG + chr2_3:17996918-17996937 None:intergenic 60.0%
! GTCCGGTGTCTGTGTCACTC+AGG - chr2_3:17997840-17997859 Msa0282200:intron 60.0%
GCCCTGAGTGACACAGACAC+CGG + chr2_3:17997845-17997864 None:intergenic 60.0%
GACTTGGGCCACCTTATGCC+TGG - chr2_3:18001056-18001075 Msa0282200:intron 60.0%
TGGAGCAGGGCATGATGCCA+TGG - chr2_3:18001281-18001300 Msa0282200:five_prime_UTR 60.0%
CTGTTTGTGCGATGTCGCGG+AGG - chr2_3:18001436-18001455 Msa0282200:intron 60.0%
GACGATGATATCTGGGCGGC+TGG - chr2_3:18001490-18001509 Msa0282200:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 17996743 18001986 17996743 ID=Msa0282200;Name=Msa0282200
chr2_3 mRNA 17996743 18001986 17996743 ID=Msa0282200-mRNA-1;Parent=Msa0282200;Name=Msa0282200-mRNA-1;_AED=0.18;_eAED=0.18;_QI=532|1|1|1|0.75|0.76|13|852|328
chr2_3 exon 17996743 17997302 17996743 ID=Msa0282200-mRNA-1:exon:7420;Parent=Msa0282200-mRNA-1
chr2_3 exon 17997406 17997567 17997406 ID=Msa0282200-mRNA-1:exon:7419;Parent=Msa0282200-mRNA-1
chr2_3 exon 17998242 17998367 17998242 ID=Msa0282200-mRNA-1:exon:7418;Parent=Msa0282200-mRNA-1
chr2_3 exon 17998442 17998718 17998442 ID=Msa0282200-mRNA-1:exon:7417;Parent=Msa0282200-mRNA-1
chr2_3 exon 17998815 17998901 17998815 ID=Msa0282200-mRNA-1:exon:7416;Parent=Msa0282200-mRNA-1
chr2_3 exon 17999005 17999110 17999005 ID=Msa0282200-mRNA-1:exon:7415;Parent=Msa0282200-mRNA-1
chr2_3 exon 17999187 17999296 17999187 ID=Msa0282200-mRNA-1:exon:7414;Parent=Msa0282200-mRNA-1
chr2_3 exon 17999591 17999707 17999591 ID=Msa0282200-mRNA-1:exon:7413;Parent=Msa0282200-mRNA-1
chr2_3 exon 17999838 17999922 17999838 ID=Msa0282200-mRNA-1:exon:7412;Parent=Msa0282200-mRNA-1
chr2_3 exon 17999994 18000097 17999994 ID=Msa0282200-mRNA-1:exon:7411;Parent=Msa0282200-mRNA-1
chr2_3 exon 18000386 18000477 18000386 ID=Msa0282200-mRNA-1:exon:7410;Parent=Msa0282200-mRNA-1
chr2_3 exon 18001197 18001313 18001197 ID=Msa0282200-mRNA-1:exon:7409;Parent=Msa0282200-mRNA-1
chr2_3 exon 18001559 18001986 18001559 ID=Msa0282200-mRNA-1:exon:7408;Parent=Msa0282200-mRNA-1
chr2_3 five_prime_UTR 18001559 18001986 18001559 ID=Msa0282200-mRNA-1:five_prime_utr;Parent=Msa0282200-mRNA-1
chr2_3 five_prime_UTR 18001210 18001313 18001210 ID=Msa0282200-mRNA-1:five_prime_utr;Parent=Msa0282200-mRNA-1
chr2_3 CDS 18001197 18001209 18001197 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 18000386 18000477 18000386 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 17999994 18000097 17999994 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 17999838 17999922 17999838 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 17999591 17999707 17999591 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 17999187 17999296 17999187 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 17999005 17999110 17999005 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 17998815 17998901 17998815 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 CDS 17998446 17998718 17998446 ID=Msa0282200-mRNA-1:cds;Parent=Msa0282200-mRNA-1
chr2_3 three_prime_UTR 17998442 17998445 17998442 ID=Msa0282200-mRNA-1:three_prime_utr;Parent=Msa0282200-mRNA-1
chr2_3 three_prime_UTR 17998242 17998367 17998242 ID=Msa0282200-mRNA-1:three_prime_utr;Parent=Msa0282200-mRNA-1
chr2_3 three_prime_UTR 17997406 17997567 17997406 ID=Msa0282200-mRNA-1:three_prime_utr;Parent=Msa0282200-mRNA-1
chr2_3 three_prime_UTR 17996743 17997302 17996743 ID=Msa0282200-mRNA-1:three_prime_utr;Parent=Msa0282200-mRNA-1
Gene Sequence

>Msa0282200

ATGAAATGTTCAAGAATTGAAACTGGAGATTTAGAAAAACGGGGTGATTTGTTTCCGCAGATTCTAAGAGATGAGGCAGTGGCAAGGCTTGTTGAGCTTGGAAAGGTTAGCGATGCTAGTGGCTATCTAGAGAGGACATTTTTGAGTCATGCATCCACGAGGGCGATAAATCTTATTCGAAAATGGATGGAAGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGAGTTGAGGGTGCAAATGCAAATGCAGAAGCTTTATTGGTTGGATCTCACATGGACACTGTTGTTGATGCTGGTAAATTTGATGGAGCACTAGGAATAGTCTCTGCAATATCTGCATTGAAAGTTATGCATGTCAATGGAAAGCTGCAAAATCTAAGGCGTCCTGTTGAGGTGATTGCATTTTGTGATGAAGAGGGTGTGAGATTTCAAACTACTTTCTTAGGCAGTGGTGCTATAGCTGGTATTTTACCTGCTACAACATTGGAGATACCTGATAAGAGGAATGTAACGGTAAAAGATGTTCTTAAAGAGAACTCGATAGAAGCTGCGGAGGAAATGTTTTTGCAGCTCAAGTATGATCCAAAATCTGTTTGGGGTTATGTCGAGCTTCACATTGAGCAGGGTCCTGTGCTTGAACAAGTTGGTTTCCCACTTGGTGTCGTTAAAGGCATAGCTGGGCAGACAAGATTGAAGGTCACGGTTAAAGGCTCACAAGGTCATGCCGGAACTGTTCCAATGTCCATGCGTCAAGATCCTATGGTGGCTGCTGCTGAACAAATTGTACTTATGGAAAGCCTCTGCAAACATCCTGAAGAGTACCTTTCTTACGATGGTCGTTGCAGTGATTCATCGATTAAATCACTTTCAAGTTCACTTGTTTGTACTGTTGGTGAAATATCAACATGGCCAAGTGCTAGTAATGTCATTCCAGGCCAGGCAAGCGACAAATTTCCAAAAAGCTGTTGA

Protein sequence

>Msa0282200

MKCSRIETGDLEKRGDLFPQILRDEAVARLVELGKVSDASGYLERTFLSHASTRAINLIRKWMEDAGLRTWVDQMGNVHGRVEGANANAEALLVGSHMDTVVDAGKFDGALGIVSAISALKVMHVNGKLQNLRRPVEVIAFCDEEGVRFQTTFLGSGAIAGILPATTLEIPDKRNVTVKDVLKENSIEAAEEMFLQLKYDPKSVWGYVELHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVKGSQGHAGTVPMSMRQDPMVAAAEQIVLMESLCKHPEEYLSYDGRCSDSSIKSLSSSLVCTVGEISTWPSASNVIPGQASDKFPKSC*