AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000880 MtrunA17_Chr7g0260571 99.525 421 2 0 5 425 178 598 0.0 871
Msa0000880 MtrunA17_Chr1g0184861 74.645 422 103 2 7 425 4 424 0.0 674
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000880 AT2G38840.2 75.000 416 104 0 5 420 21 436 0.0 683
Msa0000880 AT2G38840.1 75.000 416 104 0 5 420 179 594 0.0 682

Find 162 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGGATTCATTGGCTATTA+TGG 0.087308 1_1:+2278103 Msa0000880:CDS
TGATACTGACTATCTTTATT+AGG 0.166330 1_1:-2277881 None:intergenic
GTACAAGGAAAATCTCTAAA+TGG 0.236462 1_1:+2278415 Msa0000880:CDS
GCATTCGATCAGCAACATTT+TGG 0.262273 1_1:+2279247 Msa0000880:CDS
AATCATGTCATACAGGAATA+TGG 0.275361 1_1:+2276913 Msa0000880:intron
GTCATACAGGAATATGGATT+TGG 0.280139 1_1:+2276919 Msa0000880:intron
ATTCTATATTGGCGGTGTTA+TGG 0.294127 1_1:+2281153 Msa0000880:CDS
CTCTCTCTTTCTTGTTATGA+AGG 0.295186 1_1:+2276646 Msa0000880:five_prime_UTR
GATACTGACTATCTTTATTA+GGG 0.305401 1_1:-2277880 None:intergenic
TTGGGGAACACCTATAGATT+TGG 0.306157 1_1:+2276938 Msa0000880:five_prime_UTR
TTCTATATTGGCGGTGTTAT+GGG 0.307055 1_1:+2281154 Msa0000880:CDS
CGGGATTCATTGGCTATTAT+GGG 0.323182 1_1:+2278104 Msa0000880:CDS
GCAACTATAAAATGCCAAAC+TGG 0.328053 1_1:-2280394 None:intergenic
TCATACAGGAATATGGATTT+GGG 0.336399 1_1:+2276920 Msa0000880:intron
TCATCACTCCGATATTCCTT+TGG 0.339042 1_1:+2281281 Msa0000880:three_prime_UTR
CGGTTGATGAAAATTGATAA+TGG 0.341994 1_1:-2274712 None:intergenic
AGACCTACACAAGGTTGTTT+TGG 0.349932 1_1:+2280347 Msa0000880:CDS
CACTTTACTACAACCCAGTT+TGG 0.357110 1_1:+2280380 Msa0000880:CDS
GTCTAAGTCTCTATTTATAA+AGG 0.366560 1_1:+2280201 Msa0000880:CDS
CATCACTCCGATATTCCTTT+GGG 0.374851 1_1:+2281282 Msa0000880:three_prime_UTR
ATCCATCATATGTGAAGAAA+AGG 0.375973 1_1:+2278347 Msa0000880:CDS
TGGAATCTCTCCCTTGTTCA+AGG 0.380178 1_1:-2279074 None:intergenic
AGTTCTCAAGCTTCCTTCAA+TGG 0.384884 1_1:+2279938 Msa0000880:CDS
GTAATTGGACCGTACCGTTC+CGG 0.394679 1_1:+2276598 Msa0000880:five_prime_UTR
GAAGCTTGAAGATATCCTTC+TGG 0.396937 1_1:-2279193 None:intergenic
CCGTCAATTTCCAAATCTAT+AGG 0.403247 1_1:-2276948 None:intergenic
CAATCAAATCCGGGATTCAT+TGG 0.404107 1_1:+2278094 Msa0000880:CDS
ATCATCAGATCAATCAAATC+CGG 0.411365 1_1:+2278084 Msa0000880:intron
ACTGTAAAGTAATAATTCAT+TGG 0.414181 1_1:-2281461 None:intergenic
GGAACGGAGGTTGTTGTTGT+TGG 0.414821 1_1:-2274580 None:intergenic
CAGAAGGATTTGAAAGCATT+GGG 0.417042 1_1:+2277000 Msa0000880:five_prime_UTR
TTTGCCACTTATAGTTATGA+TGG 0.420136 1_1:+2274629 Msa0000880:five_prime_UTR
GTGCGAAGGTAAACCTTGTT+TGG 0.421349 1_1:-2274427 None:intergenic
TCCACAAGAGAACCTGTTGA+TGG 0.427990 1_1:-2279094 None:intergenic
TTTCTCCCTCGTCACGGTTG+TGG 0.429616 1_1:+2280258 Msa0000880:CDS
TACAAGGAAAATCTCTAAAT+GGG 0.432658 1_1:+2278416 Msa0000880:CDS
AAATGAACTTTATAATAAAC+CGG 0.436465 1_1:-2280285 None:intergenic
ACAGAAGGATTTGAAAGCAT+TGG 0.437082 1_1:+2276999 Msa0000880:five_prime_UTR
TATCGGAGTGATGAACAAAA+TGG 0.438346 1_1:-2281272 None:intergenic
TTGAACCTGCCAAGCTCTTG+TGG 0.441248 1_1:+2277641 Msa0000880:CDS
GACAAAGCTTTGTGACTTGA+AGG 0.448277 1_1:+2278312 Msa0000880:CDS
AGGAGACAGAAATATTGATA+TGG 0.448597 1_1:+2277978 Msa0000880:intron
CCCATTGTCGAACCTGATCC+TGG 0.459576 1_1:+2275844 Msa0000880:five_prime_UTR
TCGTCACGGTTGTGGTTGGC+CGG 0.460211 1_1:+2280266 Msa0000880:CDS
TGTGTGCTTGCAACAGAACT+AGG 0.461742 1_1:-2281350 None:intergenic
AAGCTCGCCCAAAGGAATAT+CGG 0.466643 1_1:-2281289 None:intergenic
GTTTGTTTCCTTCCTGAAGC+AGG 0.468484 1_1:+2278444 Msa0000880:CDS
ATAAGCCACAAGAGCTTGGC+AGG 0.474426 1_1:-2277646 None:intergenic
CTTACTGCCACAGATGCAAT+GGG 0.475076 1_1:-2275925 None:intergenic
TTATGATGACTAACCGTCTC+AGG 0.475662 1_1:-2277185 None:intergenic
GTCCATCATGTCCTCGCAAT+CGG 0.478174 1_1:-2279907 None:intergenic
AGTCACAAAGCTTTGTCCGC+TGG 0.480181 1_1:-2278306 None:intergenic
CCAGGATCAGGTTCGACAAT+GGG 0.480240 1_1:-2275844 None:intergenic
AAGGGAGAGATTCCATCAAC+AGG 0.484642 1_1:+2279082 Msa0000880:CDS
CCTATAGATTTGGAAATTGA+CGG 0.485037 1_1:+2276948 Msa0000880:five_prime_UTR
AGGTTGTTGTTGTTGGTTGA+AGG 0.492203 1_1:-2274573 None:intergenic
TTACTTACCTGTCAAGATCA+AGG 0.494526 1_1:-2280447 None:intergenic
AAAACTTATGATGATTCAGT+TGG 0.497813 1_1:+2281247 Msa0000880:exon
TCGTCTATCACAGGAAGGCT+TGG 0.499537 1_1:+2275879 Msa0000880:five_prime_UTR
TAAGAAGTCAGTCACGCAAC+TGG 0.499993 1_1:+2279282 Msa0000880:CDS
TCCCTCGTCACGGTTGTGGT+TGG 0.503251 1_1:+2280262 Msa0000880:CDS
TAAGTTATACAGTGAAAAGA+TGG 0.504761 1_1:+2279150 Msa0000880:CDS
CATCTCCCACACAGCTTCTG+TGG 0.505192 1_1:+2281402 Msa0000880:three_prime_UTR
GAGTCTTCATTTGTTCTAAG+AGG 0.506255 1_1:+2281620 Msa0000880:three_prime_UTR
GCCCAGTCCTTGATCTTGAC+AGG 0.508041 1_1:+2280440 Msa0000880:CDS
TTCGATCCTTGTCCGTGCGA+AGG 0.508281 1_1:-2274441 None:intergenic
ATGCGTGACACGAAAACAAA+AGG 0.511208 1_1:+2276805 Msa0000880:five_prime_UTR
ATACTTGAAGCCTTGAACAA+GGG 0.513345 1_1:+2279064 Msa0000880:CDS
TGAAGATATCCTTCTGGAAG+AGG 0.514011 1_1:-2279187 None:intergenic
AGCTTTGTGACTTGAAGGAT+GGG 0.521130 1_1:+2278317 Msa0000880:CDS
AAGCTTTGTGACTTGAAGGA+TGG 0.521331 1_1:+2278316 Msa0000880:CDS
CAAGCACACAAAGTGTCAAA+TGG 0.522477 1_1:+2281363 Msa0000880:three_prime_UTR
TCTATCACAGGAAGGCTTGG+AGG 0.522783 1_1:+2275882 Msa0000880:five_prime_UTR
TGCAGATGGGCTATCCCACT+TGG 0.526646 1_1:+2281111 Msa0000880:intron
AGGGAAATCAGTGCAACAAA+TGG 0.528159 1_1:+2277835 Msa0000880:CDS
CTTCATTTGTTCTAAGAGGA+GGG 0.529334 1_1:+2281624 Msa0000880:three_prime_UTR
TCAATGGCAAAATTTAATGC+AGG 0.530565 1_1:+2279954 Msa0000880:CDS
TGAATTGAATTTACTGAACA+AGG 0.530929 1_1:-2274520 None:intergenic
GGTGGCTTTCTCCCTCGTCA+CGG 0.533465 1_1:+2280252 Msa0000880:CDS
AGCAAACTACGAGGGACGTA+TGG 0.536139 1_1:+2280028 Msa0000880:CDS
GTGTCCATCATAACTATAAG+TGG 0.536238 1_1:-2274633 None:intergenic
CGTCACCTCTAGCCATGTCA+TGG 0.537341 1_1:-2279216 None:intergenic
ACTTACTGCCACAGATGCAA+TGG 0.537826 1_1:-2275926 None:intergenic
TCTTCATTTGTTCTAAGAGG+AGG 0.539985 1_1:+2281623 Msa0000880:three_prime_UTR
CAGGTTCAAATGCAACATCC+TGG 0.541309 1_1:-2277627 None:intergenic
ATGGTTTCAGAAGAAACAGT+TGG 0.542034 1_1:-2274693 None:intergenic
GATACTTGAAGCCTTGAACA+AGG 0.544169 1_1:+2279063 Msa0000880:intron
CCATAATAGCCAATGAATCC+CGG 0.544948 1_1:-2278103 None:intergenic
AACAAACCCCATTGCATCTG+TGG 0.545406 1_1:+2275918 Msa0000880:five_prime_UTR
TTGGATAAGCCACAAGAGCT+TGG 0.550397 1_1:-2277650 None:intergenic
TTTCTAACATTGGCCAAACA+AGG 0.553880 1_1:+2274414 Msa0000880:five_prime_UTR
AGCTTTGTCCGCTGGAGATG+TGG 0.557191 1_1:-2278298 None:intergenic
ATCCGTCCAAAGATTGTACA+AGG 0.558214 1_1:+2278400 Msa0000880:CDS
ACTGGATGAAGAAATAGATA+AGG 0.558410 1_1:+2279300 Msa0000880:CDS
TCCATCATATGTGAAGAAAA+GGG 0.560512 1_1:+2278348 Msa0000880:CDS
TCCATCAACAGGTTCTCTTG+TGG 0.561510 1_1:+2279093 Msa0000880:CDS
GAAGCTTGAGAACTTGAAGC+TGG 0.561670 1_1:-2279929 None:intergenic
TTCCTTGTACAATCTTTGGA+CGG 0.563359 1_1:-2278402 None:intergenic
AGAACTAGGTAGGTGCATGC+AGG 0.569739 1_1:-2281336 None:intergenic
TACCTGTCAAGATCAAGGAC+TGG 0.569959 1_1:-2280442 None:intergenic
TACAAAACTTCGTCTATCAC+AGG 0.570289 1_1:+2275870 Msa0000880:five_prime_UTR
CAACTATAAAATGCCAAACT+GGG 0.572320 1_1:-2280393 None:intergenic
GAAATCAGTGCAACAAATGG+TGG 0.572848 1_1:+2277838 Msa0000880:CDS
GTTGAAACAAGACAGCATCA+TGG 0.573699 1_1:-2274487 None:intergenic
CACTTGCAATGTCCGTGTGT+TGG 0.574543 1_1:+2277492 Msa0000880:exon
AAAGATATTATTACACCAAG+TGG 0.576063 1_1:-2281126 None:intergenic
CAGTGAAAAGATGGCCACAT+TGG 0.576184 1_1:+2279159 Msa0000880:CDS
TCAAGCCACAGAAGCTGTGT+GGG 0.579053 1_1:-2281407 None:intergenic
GGTTTACCTTCGCACGGACA+AGG 0.580176 1_1:+2274435 Msa0000880:five_prime_UTR
AAAGACTTTCCGGAACGGTA+CGG 0.581971 1_1:-2276607 None:intergenic
ACATACTTGTGGTAAGCTAA+AGG 0.582503 1_1:-2278141 None:intergenic
TCATCAGATCAATCAAATCC+GGG 0.584889 1_1:+2278085 Msa0000880:intron
TCATGTATTGACATGTAGAC+GGG 0.588424 1_1:+2281544 Msa0000880:three_prime_UTR
CACCGATTGCGAGGACATGA+TGG 0.588869 1_1:+2279905 Msa0000880:CDS
GTCATGTATTGACATGTAGA+CGG 0.589403 1_1:+2281543 Msa0000880:three_prime_UTR
TATCTATAATCTGCCTGAGA+CGG 0.594970 1_1:+2277172 Msa0000880:five_prime_UTR
AAGATATTATTACACCAAGT+GGG 0.595317 1_1:-2281125 None:intergenic
GCCAACCACAACCGTGACGA+GGG 0.595392 1_1:-2280263 None:intergenic
AGTCGAATGTATATGATGAT+CGG 0.595943 1_1:+2277024 Msa0000880:five_prime_UTR
GGCCAACCACAACCGTGACG+AGG 0.597641 1_1:-2280264 None:intergenic
TTGCTGATCGAATGCTTGCA+TGG 0.600379 1_1:-2279239 None:intergenic
TATTATGGGTGACAATAGTA+CGG 0.600421 1_1:+2278118 Msa0000880:CDS
TTTGATATCTGAAAATCGAA+AGG 0.602266 1_1:-2274601 None:intergenic
ACCAGGATCAGGTTCGACAA+TGG 0.602966 1_1:-2275845 None:intergenic
ATCAAGCCACAGAAGCTGTG+TGG 0.603181 1_1:-2281408 None:intergenic
TCTTCAAGCTTCCCATGACA+TGG 0.604681 1_1:+2279204 Msa0000880:CDS
AAACAAGGTTTACCTTCGCA+CGG 0.606024 1_1:+2274429 Msa0000880:five_prime_UTR
GTCACCTCTAGCCATGTCAT+GGG 0.607351 1_1:-2279215 None:intergenic
TAAATCTTCAAAGCTTTGTG+AGG 0.609297 1_1:+2279875 Msa0000880:CDS
AGTGTCAAATGGTGATCAGA+GGG 0.609348 1_1:+2281374 Msa0000880:three_prime_UTR
ACCTGTCAAGATCAAGGACT+GGG 0.612834 1_1:-2280441 None:intergenic
ACCAAGTACCTGCTTCAGGA+AGG 0.616523 1_1:-2278452 None:intergenic
AAGTGTCAAATGGTGATCAG+AGG 0.619570 1_1:+2281373 Msa0000880:three_prime_UTR
TTATAAAGGAGTACAACCAC+AGG 0.623382 1_1:+2280215 Msa0000880:CDS
GCTTCCCATGACATGGCTAG+AGG 0.624847 1_1:+2279211 Msa0000880:CDS
CTACGAGGGACGTATGGCAA+AGG 0.627470 1_1:+2280034 Msa0000880:CDS
GGCACTGTACACCGATTGCG+AGG 0.628615 1_1:+2279896 Msa0000880:CDS
GCTTTGTGACTTGAAGGATG+GGG 0.644739 1_1:+2278318 Msa0000880:CDS
CTGAAAATCGAAAGGAACGG+AGG 0.648245 1_1:-2274593 None:intergenic
CTGACTTCTTAGCATGGTGA+CGG 0.653596 1_1:-2279270 None:intergenic
TGGAAGAGGTAGAGCCAATG+TGG 0.653977 1_1:-2279173 None:intergenic
AAACTTCGTCTATCACAGGA+AGG 0.654561 1_1:+2275874 Msa0000880:five_prime_UTR
TGACCAAAACAACCTTGTGT+AGG 0.656892 1_1:-2280350 None:intergenic
CTTCACTCTATTCCAACACA+CGG 0.659292 1_1:-2277504 None:intergenic
GCGTGACTGACTTCTTAGCA+TGG 0.660593 1_1:-2279276 None:intergenic
TTGGCTCTACCTCTTCCAGA+AGG 0.665756 1_1:+2279178 Msa0000880:CDS
ATAACTATAAGTGGCAAATG+CGG 0.668267 1_1:-2274624 None:intergenic
CATACAGGAATATGGATTTG+GGG 0.676634 1_1:+2276921 Msa0000880:intron
ACCTTCAAAAGCAAACTACG+AGG 0.688387 1_1:+2280019 Msa0000880:CDS
ACTTACGCAGAAAATCACGT+TGG 0.691453 1_1:-2277669 None:intergenic
TCAAACAGCCACATCTCCAG+CGG 0.692057 1_1:+2278290 Msa0000880:intron
AAGCACAGAACTTATAACAG+TGG 0.700561 1_1:-2277150 None:intergenic
CCTTCAAAAGCAAACTACGA+GGG 0.700718 1_1:+2280020 Msa0000880:CDS
GTAAAATCAACATGATACTG+TGG 0.700820 1_1:-2281439 None:intergenic
CGTGTGTTGGAATAGAGTGA+AGG 0.701201 1_1:+2277505 Msa0000880:CDS
TATCTGAAAATCGAAAGGAA+CGG 0.702519 1_1:-2274596 None:intergenic
TATTTCTGGAGACCTACACA+AGG 0.706921 1_1:+2280338 Msa0000880:CDS
CCAACCAATTGAAAAGCCTG+TGG 0.707705 1_1:-2280231 None:intergenic
TACATGTCAATACATGACAG+TGG 0.724648 1_1:-2281538 None:intergenic
TGCTTGCAACAGAACTAGGT+AGG 0.736436 1_1:-2281346 None:intergenic
TTACTGCCACAGATGCAATG+GGG 0.746702 1_1:-2275924 None:intergenic
AAAAGAAACATGGATCACGG+TGG 0.783518 1_1:+2281178 Msa0000880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAATTCAATTTTTATG+AGG + chr1_1:2274922-2274941 Msa0000880:intron 10.0%
!!! TAGAAGTCAATTTTATTTTT+GGG + chr1_1:2275294-2275313 Msa0000880:intron 15.0%
!! TAAGAAACATAAAAAAAAGT+TGG - chr1_1:2275708-2275727 None:intergenic 15.0%
!!! TTAGCTAAAATTTTTATGAA+TGG + chr1_1:2276417-2276436 Msa0000880:intron 15.0%
!! GTAATATTATTACTGATAAT+TGG - chr1_1:2278029-2278048 None:intergenic 15.0%
!!! ATTATGCTACATTTTATATA+AGG - chr1_1:2278717-2278736 None:intergenic 15.0%
!!! AATGTAGCATAATTTTTTTA+AGG + chr1_1:2278724-2278743 Msa0000880:intron 15.0%
!! AATATTCGTTATAGTATAAT+GGG + chr1_1:2279332-2279351 Msa0000880:intron 15.0%
!!! TCAAATATGTTATATAGTTT+TGG + chr1_1:2279438-2279457 Msa0000880:intron 15.0%
!!! TTTAAAGCTTATATTTACTA+TGG + chr1_1:2279786-2279805 Msa0000880:intron 15.0%
!! TTAAAGCTTATATTTACTAT+GGG + chr1_1:2279787-2279806 Msa0000880:intron 15.0%
!! AAATGAACTTTATAATAAAC+CGG - chr1_1:2280288-2280307 None:intergenic 15.0%
!!! ATCAAACTAACAATATTTTA+TGG + chr1_1:2281049-2281068 Msa0000880:intron 15.0%
!!! TATCTTTTTTCATTCTATAT+TGG + chr1_1:2281142-2281161 Msa0000880:CDS 15.0%
!! GTAACAAAAAAAAAAAAAAG+AGG + chr1_1:2281654-2281673 Msa0000880:three_prime_UTR 15.0%
!! AAAGAGATAAAAGAAACTTA+CGG - chr1_1:2274735-2274754 None:intergenic 20.0%
!!! TTGTTAAAGTTAAAACCTTT+TGG + chr1_1:2274825-2274844 Msa0000880:intron 20.0%
!!! ATTCAATTTTTATGAGGTTA+AGG + chr1_1:2274928-2274947 Msa0000880:intron 20.0%
!!! TTCAATTTTTATGAGGTTAA+GGG + chr1_1:2274929-2274948 Msa0000880:intron 20.0%
!! ACTAAGTAATCTTCATTAAT+TGG - chr1_1:2275115-2275134 None:intergenic 20.0%
!!! GTAGAAGTCAATTTTATTTT+TGG + chr1_1:2275293-2275312 Msa0000880:intron 20.0%
!!! TTTTATTTTTGGGTCAATTA+TGG + chr1_1:2275304-2275323 Msa0000880:intron 20.0%
!!! CATTTTGTTTATATTATGGA+GGG - chr1_1:2275470-2275489 None:intergenic 20.0%
!! CTCCATAATATAAACAAAAT+GGG + chr1_1:2275469-2275488 Msa0000880:intron 20.0%
!!! TTCCCATTTTGTTTATATTA+TGG - chr1_1:2275474-2275493 None:intergenic 20.0%
!! TGGTGATAAATTGTTAATTT+AGG + chr1_1:2275566-2275585 Msa0000880:intron 20.0%
!! TGATAAATTGTTAATTTAGG+TGG + chr1_1:2275569-2275588 Msa0000880:intron 20.0%
!! GTTTGAATTTAGAAAACAAA+AGG - chr1_1:2275971-2275990 None:intergenic 20.0%
!! GAAATAATGACTTATCTAAA+TGG - chr1_1:2276089-2276108 None:intergenic 20.0%
!! AAGAAAATAAAAGTTTGCAT+TGG - chr1_1:2276305-2276324 None:intergenic 20.0%
!!! CATAAAAATTTTAGCTAATG+AGG - chr1_1:2276415-2276434 None:intergenic 20.0%
!!! TTTCTACTTTTATCACTTTA+TGG + chr1_1:2276536-2276555 Msa0000880:intron 20.0%
!!! TTGTTACTACTTTTTTTATC+AGG + chr1_1:2276576-2276595 Msa0000880:intron 20.0%
!!! TACTTTTTTTATCAGGTAAT+TGG + chr1_1:2276583-2276602 Msa0000880:intron 20.0%
!!! CTAACATATTTGTTTTCTTA+GGG + chr1_1:2276767-2276786 Msa0000880:intron 20.0%
!!! TTATCATTTTTCTCTTTGTT+AGG + chr1_1:2276838-2276857 Msa0000880:intron 20.0%
!! ACATCAAATTAACAACAAAA+AGG - chr1_1:2277580-2277599 None:intergenic 20.0%
!!! CAATGCTTATAAAGTTATTT+TGG + chr1_1:2277717-2277736 Msa0000880:intron 20.0%
!!! AAAAAATTGCTTTAGAAAAC+AGG - chr1_1:2277932-2277951 None:intergenic 20.0%
!! CAGTAATAATATTACTAGTT+TGG + chr1_1:2278034-2278053 Msa0000880:intron 20.0%
!!! TTTTATTAAAAACACTGCTT+TGG + chr1_1:2278239-2278258 Msa0000880:intron 20.0%
!!! AATATTTTGTTTGATTGAGA+GGG - chr1_1:2278838-2278857 None:intergenic 20.0%
!!! AAATATTTTGTTTGATTGAG+AGG - chr1_1:2278839-2278858 None:intergenic 20.0%
!! TCATCAGAAAACATTAAAAA+TGG - chr1_1:2278944-2278963 None:intergenic 20.0%
!!! TAAAAGATAAAGCTGTTTTA+TGG - chr1_1:2279030-2279049 None:intergenic 20.0%
!! GAATATTCGTTATAGTATAA+TGG + chr1_1:2279331-2279350 Msa0000880:intron 20.0%
!!! CATATTCATTTGTTACATTA+AGG - chr1_1:2280167-2280186 None:intergenic 20.0%
!!! AAGTTCATTTTGATTGAAAT+TGG + chr1_1:2280298-2280317 Msa0000880:CDS 20.0%
!!! ATGGTTACTTTTTATATTTC+TGG + chr1_1:2280324-2280343 Msa0000880:CDS 20.0%
!!! TTTAAGATCCATTATATTGT+AGG + chr1_1:2280533-2280552 Msa0000880:intron 20.0%
!! TGTTTGATTCATAAAAACTA+TGG + chr1_1:2280902-2280921 Msa0000880:intron 20.0%
!!! TTTTTATTGAAATTGCAGAT+GGG + chr1_1:2281098-2281117 Msa0000880:intron 20.0%
!!! TTTTTATTGCTGCTATATAA+TGG - chr1_1:2281210-2281229 None:intergenic 20.0%
!! ACTGTAAAGTAATAATTCAT+TGG - chr1_1:2281464-2281483 None:intergenic 20.0%
! TGAATTGAATTTACTGAACA+AGG - chr1_1:2274523-2274542 None:intergenic 25.0%
! TTTGATATCTGAAAATCGAA+AGG - chr1_1:2274604-2274623 None:intergenic 25.0%
! ATGTATGGATGGTAAATAAA+TGG + chr1_1:2275024-2275043 Msa0000880:intron 25.0%
! AAGATTACTTAGTGTATGTT+TGG + chr1_1:2275122-2275141 Msa0000880:intron 25.0%
!! ACTCTTGAGTTTTTCTTTTT+TGG + chr1_1:2275263-2275282 Msa0000880:intron 25.0%
! TAAGAATAGAAGATATTGTG+AGG + chr1_1:2275350-2275369 Msa0000880:intron 25.0%
!!! CCATTTTGTTTATATTATGG+AGG - chr1_1:2275471-2275490 None:intergenic 25.0%
! CCTCCATAATATAAACAAAA+TGG + chr1_1:2275468-2275487 Msa0000880:intron 25.0%
! ATGTTGCCAATTCAATAATT+TGG + chr1_1:2275631-2275650 Msa0000880:intron 25.0%
! TGTTGCCAATTCAATAATTT+GGG + chr1_1:2275632-2275651 Msa0000880:intron 25.0%
! GATATGACAAAACAATAACA+AGG - chr1_1:2275740-2275759 None:intergenic 25.0%
! CATAACTAACAAAAGAAGTT+TGG - chr1_1:2275781-2275800 None:intergenic 25.0%
!! ACTTGAAAGTTGATTTAACT+TGG + chr1_1:2276178-2276197 Msa0000880:intron 25.0%
! ACAGCAGATACTATATAAAT+AGG + chr1_1:2276222-2276241 Msa0000880:intron 25.0%
! ATTAAGCAAAAAAGACTTTC+CGG - chr1_1:2276620-2276639 None:intergenic 25.0%
!!! GCTAACATATTTGTTTTCTT+AGG + chr1_1:2276766-2276785 Msa0000880:intron 25.0%
!!! ATATTTGTTTTCTTAGGGTT+TGG + chr1_1:2276772-2276791 Msa0000880:intron 25.0%
!!! GAGCTCGTTTTAAATTTTTT+AGG + chr1_1:2277220-2277239 Msa0000880:intron 25.0%
!!! GAGAATAAAACATTTTAGCA+TGG - chr1_1:2277246-2277265 None:intergenic 25.0%
!!! TCTGCTTTGTAACATTTTTT+TGG + chr1_1:2277419-2277438 Msa0000880:five_prime_UTR 25.0%
!!! CTGCTTTGTAACATTTTTTT+GGG + chr1_1:2277420-2277439 Msa0000880:five_prime_UTR 25.0%
!!! TTGATGTATTTTTCAATTGC+TGG + chr1_1:2277593-2277612 Msa0000880:intron 25.0%
!! GATACTGACTATCTTTATTA+GGG - chr1_1:2277883-2277902 None:intergenic 25.0%
!! TGATACTGACTATCTTTATT+AGG - chr1_1:2277884-2277903 None:intergenic 25.0%
! TACAAGGAAAATCTCTAAAT+GGG + chr1_1:2278416-2278435 Msa0000880:CDS 25.0%
!! GTTTTTCATGTTCTCTTTAA+TGG + chr1_1:2278473-2278492 Msa0000880:intron 25.0%
! CTTTAAGTAATAGTCTATGA+AGG + chr1_1:2278579-2278598 Msa0000880:intron 25.0%
! GAAAACATTAAAAATGGCAA+AGG - chr1_1:2278938-2278957 None:intergenic 25.0%
! TAAGTTATACAGTGAAAAGA+TGG + chr1_1:2279150-2279169 Msa0000880:CDS 25.0%
! GAAAAGAAAATAGGCTTATT+GGG + chr1_1:2279361-2279380 Msa0000880:intron 25.0%
! TTATTGGGAATTTAATTAGC+TGG + chr1_1:2279376-2279395 Msa0000880:intron 25.0%
! TTAAAGGATATTAAGCATCT+TGG - chr1_1:2279687-2279706 None:intergenic 25.0%
! ATATATCATCCAATCAAATG+CGG - chr1_1:2279717-2279736 None:intergenic 25.0%
! GGAAAAATCATATTTACTTG+AGG + chr1_1:2279808-2279827 Msa0000880:intron 25.0%
! GTCTAAGTCTCTATTTATAA+AGG + chr1_1:2280201-2280220 Msa0000880:CDS 25.0%
!!! TTCATTTTGATTGAAATTGG+AGG + chr1_1:2280301-2280320 Msa0000880:CDS 25.0%
! TTGAAAGAACGAAAGAAATA+CGG - chr1_1:2280474-2280493 None:intergenic 25.0%
! TTATCTAGCCTACAATATAA+TGG - chr1_1:2280544-2280563 None:intergenic 25.0%
! TCATATAAATCGATGTAAAC+AGG - chr1_1:2280598-2280617 None:intergenic 25.0%
!!! GTTTTTTTCATAACCAATCT+TGG - chr1_1:2280724-2280743 None:intergenic 25.0%
!! TGGTAAATAGTTTTCTTTGT+TGG + chr1_1:2280922-2280941 Msa0000880:intron 25.0%
!! TAAATAGTTTTCTTTGTTGG+CGG + chr1_1:2280925-2280944 Msa0000880:intron 25.0%
!! CTTTTTATTGAAATTGCAGA+TGG + chr1_1:2281097-2281116 Msa0000880:intron 25.0%
! AAGATATTATTACACCAAGT+GGG - chr1_1:2281128-2281147 None:intergenic 25.0%
! AAAGATATTATTACACCAAG+TGG - chr1_1:2281129-2281148 None:intergenic 25.0%
!!! CTTTTTTCATTCTATATTGG+CGG + chr1_1:2281145-2281164 Msa0000880:CDS 25.0%
! AAAACTTATGATGATTCAGT+TGG + chr1_1:2281247-2281266 Msa0000880:exon 25.0%
!!! AGCTTTTTCATTTTTGTACA+TGG + chr1_1:2281307-2281326 Msa0000880:three_prime_UTR 25.0%
!!! TGTCACATTTTAGAGTAAAT+TGG + chr1_1:2281490-2281509 Msa0000880:three_prime_UTR 25.0%
!!! GGAGTTGTTTTTTCTAACAT+TGG + chr1_1:2274404-2274423 Msa0000880:five_prime_UTR 30.0%
TATCTGAAAATCGAAAGGAA+CGG - chr1_1:2274599-2274618 None:intergenic 30.0%
ATAACTATAAGTGGCAAATG+CGG - chr1_1:2274627-2274646 None:intergenic 30.0%
! TTTGCCACTTATAGTTATGA+TGG + chr1_1:2274629-2274648 Msa0000880:five_prime_UTR 30.0%
!! CGGTTGATGAAAATTGATAA+TGG - chr1_1:2274715-2274734 None:intergenic 30.0%
ATGGATGGTAAATAAATGGA+TGG + chr1_1:2275028-2275047 Msa0000880:intron 30.0%
TACTTAGTGTATGTTTGGAT+CGG + chr1_1:2275127-2275146 Msa0000880:intron 30.0%
AAACTGTTTAACCGTATGTT+TGG - chr1_1:2275221-2275240 None:intergenic 30.0%
!! TTTTGGGTCAATTATGGAAT+AGG + chr1_1:2275310-2275329 Msa0000880:intron 30.0%
GTTGCCAATTCAATAATTTG+GGG + chr1_1:2275633-2275652 Msa0000880:intron 30.0%
!! ATTGTTTTGTCATATCCTCT+TGG + chr1_1:2275744-2275763 Msa0000880:intron 30.0%
!! TTGTTTTGTCATATCCTCTT+GGG + chr1_1:2275745-2275764 Msa0000880:intron 30.0%
AAATCTGTACACGCAAAAAT+TGG - chr1_1:2275824-2275843 None:intergenic 30.0%
TCGTAACACTTATTGATGTT+TGG + chr1_1:2276010-2276029 Msa0000880:intron 30.0%
TAACACTTATTGATGTTTGG+TGG + chr1_1:2276013-2276032 Msa0000880:intron 30.0%
TACTATATAAATAGGCCTCT+AGG + chr1_1:2276230-2276249 Msa0000880:intron 30.0%
TACACGATAATATTTCCTAG+AGG - chr1_1:2276248-2276267 None:intergenic 30.0%
! AGATTTTCTGTCTCATCTTT+AGG - chr1_1:2276330-2276349 None:intergenic 30.0%
ACAGAAAATCTTTACAAGAG+TGG + chr1_1:2276339-2276358 Msa0000880:intron 30.0%
CAGAAAATCTTTACAAGAGT+GGG + chr1_1:2276340-2276359 Msa0000880:intron 30.0%
AGAAAATCTTTACAAGAGTG+GGG + chr1_1:2276341-2276360 Msa0000880:intron 30.0%
TGTTCCACATTTATCATTCA+TGG + chr1_1:2276513-2276532 Msa0000880:intron 30.0%
GAAACCATGAATGATAAATG+TGG - chr1_1:2276520-2276539 None:intergenic 30.0%
GTGATAAGAGTAAATTCTAG+TGG - chr1_1:2276686-2276705 None:intergenic 30.0%
! TCTTATCACATGCAGTTTTT+AGG + chr1_1:2276697-2276716 Msa0000880:intron 30.0%
CTCATTTAATCATGTCATAC+AGG + chr1_1:2276906-2276925 Msa0000880:intron 30.0%
AATCATGTCATACAGGAATA+TGG + chr1_1:2276913-2276932 Msa0000880:intron 30.0%
TCATACAGGAATATGGATTT+GGG + chr1_1:2276920-2276939 Msa0000880:intron 30.0%
CCTATAGATTTGGAAATTGA+CGG + chr1_1:2276948-2276967 Msa0000880:five_prime_UTR 30.0%
! GTCTTTTACATTGATACAGA+AGG + chr1_1:2276984-2277003 Msa0000880:five_prime_UTR 30.0%
AGTCGAATGTATATGATGAT+CGG + chr1_1:2277024-2277043 Msa0000880:five_prime_UTR 30.0%
CAAAAGGAAAACACAAGAAA+AGG - chr1_1:2277113-2277132 None:intergenic 30.0%
!!! ACATTTTTTTGGGTAAATCG+TGG + chr1_1:2277430-2277449 Msa0000880:five_prime_UTR 30.0%
AATAGTTGATTAGATGAACG+AGG - chr1_1:2277550-2277569 None:intergenic 30.0%
!!! TTTCAATTGCTGGCTTTTAT+AGG + chr1_1:2277603-2277622 Msa0000880:intron 30.0%
!!! TTCAATTGCTGGCTTTTATA+GGG + chr1_1:2277604-2277623 Msa0000880:intron 30.0%
! AACTTTATAAGCATTGCATG+AGG - chr1_1:2277713-2277732 None:intergenic 30.0%
!! GCTCTTTATATTTAACTTGC+AGG + chr1_1:2277958-2277977 Msa0000880:intron 30.0%
AGGAGACAGAAATATTGATA+TGG + chr1_1:2277978-2277997 Msa0000880:intron 30.0%
ATCATCAGATCAATCAAATC+CGG + chr1_1:2278084-2278103 Msa0000880:intron 30.0%
TATTATGGGTGACAATAGTA+CGG + chr1_1:2278118-2278137 Msa0000880:CDS 30.0%
!! ACTGATTTTTAGAAGACATG+AGG - chr1_1:2278172-2278191 None:intergenic 30.0%
ATTAAAAACACTGCTTTGGT+TGG + chr1_1:2278243-2278262 Msa0000880:intron 30.0%
GGCTAATTAATCCTTGAAAT+TGG + chr1_1:2278264-2278283 Msa0000880:intron 30.0%
ATCCATCATATGTGAAGAAA+AGG + chr1_1:2278347-2278366 Msa0000880:CDS 30.0%
TCCATCATATGTGAAGAAAA+GGG + chr1_1:2278348-2278367 Msa0000880:CDS 30.0%
! GATTTTCCTTGTACAATCTT+TGG - chr1_1:2278409-2278428 None:intergenic 30.0%
GTACAAGGAAAATCTCTAAA+TGG + chr1_1:2278415-2278434 Msa0000880:CDS 30.0%
TAAGGAGATACAAAGTAAGT+TGG + chr1_1:2278742-2278761 Msa0000880:intron 30.0%
AGGAGATAACTCTCTTAATT+TGG - chr1_1:2278808-2278827 None:intergenic 30.0%
AGAGAAAACATACTGCATAA+GGG - chr1_1:2278904-2278923 None:intergenic 30.0%
AAATGGCAAAGGACTAAATT+GGG - chr1_1:2278927-2278946 None:intergenic 30.0%
AAAATGGCAAAGGACTAAAT+TGG - chr1_1:2278928-2278947 None:intergenic 30.0%
ACTGGATGAAGAAATAGATA+AGG + chr1_1:2279300-2279319 Msa0000880:CDS 30.0%
GGAAAAGAAAATAGGCTTAT+TGG + chr1_1:2279360-2279379 Msa0000880:intron 30.0%
CAAATGCGGCTAAAATTTAA+AGG - chr1_1:2279703-2279722 None:intergenic 30.0%
!! AAATTTTAGCCGCATTTGAT+TGG + chr1_1:2279705-2279724 Msa0000880:intron 30.0%
!!! CTCTATTTTGATCTTGGAAT+TGG + chr1_1:2279753-2279772 Msa0000880:intron 30.0%
TTACTTGAGGATAATTATGC+AGG + chr1_1:2279821-2279840 Msa0000880:intron 30.0%
! TAAATCTTCAAAGCTTTGTG+AGG + chr1_1:2279875-2279894 Msa0000880:CDS 30.0%
! GCATTAAATTTTGCCATTGA+AGG - chr1_1:2279954-2279973 None:intergenic 30.0%
TCAATGGCAAAATTTAATGC+AGG + chr1_1:2279954-2279973 Msa0000880:CDS 30.0%
ATGTTAAGCATATGAAACAG+TGG - chr1_1:2280143-2280162 None:intergenic 30.0%
ACAAATGAATATGCAGATGT+TGG + chr1_1:2280174-2280193 Msa0000880:intron 30.0%
!! TTTTGATTGAAATTGGAGGA+TGG + chr1_1:2280305-2280324 Msa0000880:CDS 30.0%
CAACTATAAAATGCCAAACT+GGG - chr1_1:2280396-2280415 None:intergenic 30.0%
ATAAACACTTGTGAGATTGT+TGG + chr1_1:2280632-2280651 Msa0000880:intron 30.0%
CTTGGAGAGCTTATAAAAAT+AGG - chr1_1:2280706-2280725 None:intergenic 30.0%
! TTTTATAAGCTCTCCAAGAT+TGG + chr1_1:2280708-2280727 Msa0000880:intron 30.0%
TTCTTTGTCGTACTTTAAGT+CGG + chr1_1:2280855-2280874 Msa0000880:intron 30.0%
! AAATAGTTTTCTTTGTTGGC+GGG + chr1_1:2280926-2280945 Msa0000880:intron 30.0%
! TTCCATTTTCTCTTAAGCAA+TGG + chr1_1:2281001-2281020 Msa0000880:intron 30.0%
TGTTATGGGAAAAAGAAACA+TGG + chr1_1:2281168-2281187 Msa0000880:CDS 30.0%
!! CATAAGTTTTAGTCTGTTCT+TGG - chr1_1:2281237-2281256 None:intergenic 30.0%
GTAAAATCAACATGATACTG+TGG - chr1_1:2281442-2281461 None:intergenic 30.0%
TTTCTAACATTGGCCAAACA+AGG + chr1_1:2274414-2274433 Msa0000880:five_prime_UTR 35.0%
GTGTCCATCATAACTATAAG+TGG - chr1_1:2274636-2274655 None:intergenic 35.0%
ATGGTTTCAGAAGAAACAGT+TGG - chr1_1:2274696-2274715 None:intergenic 35.0%
!! GTTTGTTTGTTTCTGAGATC+TGG + chr1_1:2274778-2274797 Msa0000880:intron 35.0%
! CTGGTAACTGTTTTCAGTTT+TGG + chr1_1:2274797-2274816 Msa0000880:intron 35.0%
! AACCTTTTGGATCCTTTCTT+TGG + chr1_1:2274838-2274857 Msa0000880:intron 35.0%
AATTACCCAACTCCAAAGAA+AGG - chr1_1:2274853-2274872 None:intergenic 35.0%
!! TTTCTTTGGAGTTGGGTAAT+TGG + chr1_1:2274852-2274871 Msa0000880:intron 35.0%
!! TTCTTTGGAGTTGGGTAATT+GGG + chr1_1:2274853-2274872 Msa0000880:intron 35.0%
ATTCAAGCTAGCTCATGATT+TGG - chr1_1:2274986-2275005 None:intergenic 35.0%
! ATGAGCTAGCTTGAATTTAG+TGG + chr1_1:2274990-2275009 Msa0000880:intron 35.0%
! ATCGTTTGCTAATGTATGGA+TGG + chr1_1:2275013-2275032 Msa0000880:intron 35.0%
GATGGTAAATAAATGGATGG+TGG + chr1_1:2275031-2275050 Msa0000880:intron 35.0%
GTCAATTATGGAATAGGAGT+TGG + chr1_1:2275316-2275335 Msa0000880:intron 35.0%
CATGTACAAGAATAGAGTTG+CGG + chr1_1:2275376-2275395 Msa0000880:intron 35.0%
! TCTCAAGTTGTACATAGATG+TGG + chr1_1:2275546-2275565 Msa0000880:intron 35.0%
TGATAACAAAGAAAGAGTCC+CGG - chr1_1:2275659-2275678 None:intergenic 35.0%
TACAAAACTTCGTCTATCAC+AGG + chr1_1:2275870-2275889 Msa0000880:five_prime_UTR 35.0%
CTAATGAGGATCATCAACAT+TGG - chr1_1:2276401-2276420 None:intergenic 35.0%
TTCACTGTGATTCAAAGTGA+CGG + chr1_1:2276460-2276479 Msa0000880:intron 35.0%
ACTTTATGGCTTTCTTACTC+AGG + chr1_1:2276550-2276569 Msa0000880:intron 35.0%
! CTCTCTCTTTCTTGTTATGA+AGG + chr1_1:2276646-2276665 Msa0000880:five_prime_UTR 35.0%
TTCTCTTTGTTAGGCTTAGT+TGG + chr1_1:2276847-2276866 Msa0000880:intron 35.0%
GTCATACAGGAATATGGATT+TGG + chr1_1:2276919-2276938 Msa0000880:intron 35.0%
CATACAGGAATATGGATTTG+GGG + chr1_1:2276921-2276940 Msa0000880:intron 35.0%
CCGTCAATTTCCAAATCTAT+AGG - chr1_1:2276951-2276970 None:intergenic 35.0%
! ACAGAAGGATTTGAAAGCAT+TGG + chr1_1:2276999-2277018 Msa0000880:five_prime_UTR 35.0%
!! CAGAAGGATTTGAAAGCATT+GGG + chr1_1:2277000-2277019 Msa0000880:five_prime_UTR 35.0%
! TTCTTGTGTTTTCCTTTTGC+AGG + chr1_1:2277114-2277133 Msa0000880:intron 35.0%
AAGCACAGAACTTATAACAG+TGG - chr1_1:2277153-2277172 None:intergenic 35.0%
TATCTATAATCTGCCTGAGA+CGG + chr1_1:2277172-2277191 Msa0000880:five_prime_UTR 35.0%
TAAAACGAGCTCATTTCTGA+GGG - chr1_1:2277212-2277231 None:intergenic 35.0%
TTAAAACGAGCTCATTTCTG+AGG - chr1_1:2277213-2277232 None:intergenic 35.0%
! TCGCTGAAGAATTTTATGGA+AGG + chr1_1:2277320-2277339 Msa0000880:five_prime_UTR 35.0%
TTTGGTCACTGCTGAATAAT+TGG + chr1_1:2277735-2277754 Msa0000880:intron 35.0%
TTGGTCACTGCTGAATAATT+GGG + chr1_1:2277736-2277755 Msa0000880:intron 35.0%
ATCCAATAGAGTTGACATGA+TGG - chr1_1:2277787-2277806 None:intergenic 35.0%
TTTCCTTAATATCCTGCAGA+AGG + chr1_1:2277815-2277834 Msa0000880:intron 35.0%
TTCCTTAATATCCTGCAGAA+GGG + chr1_1:2277816-2277835 Msa0000880:intron 35.0%
TGATATGGTATAGTCTCTTC+TGG + chr1_1:2277993-2278012 Msa0000880:intron 35.0%
TCATCAGATCAATCAAATCC+GGG + chr1_1:2278085-2278104 Msa0000880:intron 35.0%
ACATACTTGTGGTAAGCTAA+AGG - chr1_1:2278144-2278163 None:intergenic 35.0%
TACGAATGAATTCCACGTTA+GGG - chr1_1:2278213-2278232 None:intergenic 35.0%
ATACGAATGAATTCCACGTT+AGG - chr1_1:2278214-2278233 None:intergenic 35.0%
! CTGTTTGAAGTCCAATTTCA+AGG - chr1_1:2278278-2278297 None:intergenic 35.0%
! TCCCTTTTCTTCACATATGA+TGG - chr1_1:2278352-2278371 None:intergenic 35.0%
TTCCTTGTACAATCTTTGGA+CGG - chr1_1:2278405-2278424 None:intergenic 35.0%
AACAACAGATATCTCGAACA+TGG - chr1_1:2278558-2278577 None:intergenic 35.0%
GAGATGCTAATAGAGAGAAA+GGG - chr1_1:2278768-2278787 None:intergenic 35.0%
AGAGATGCTAATAGAGAGAA+AGG - chr1_1:2278769-2278788 None:intergenic 35.0%
!! TTTTGTTTGATTGAGAGGGA+GGG - chr1_1:2278834-2278853 None:intergenic 35.0%
!! ATTTTGTTTGATTGAGAGGG+AGG - chr1_1:2278835-2278854 None:intergenic 35.0%
! TAAGGGTTTGTTTGGTTCAA+AGG - chr1_1:2278887-2278906 None:intergenic 35.0%
! ATACTGCATAAGGGTTTGTT+TGG - chr1_1:2278895-2278914 None:intergenic 35.0%
GAGAGAAAACATACTGCATA+AGG - chr1_1:2278905-2278924 None:intergenic 35.0%
ATACTTGAAGCCTTGAACAA+GGG + chr1_1:2279064-2279083 Msa0000880:CDS 35.0%
! TCTTGTGGAGATTTTCAACA+AGG + chr1_1:2279108-2279127 Msa0000880:CDS 35.0%
! GTTATAGTATAATGGGAGCT+TGG + chr1_1:2279339-2279358 Msa0000880:intron 35.0%
GTGATTCATAAGTCCTTCAT+AGG - chr1_1:2279591-2279610 None:intergenic 35.0%
!!! AGTCTGCTCTATTTTGATCT+TGG + chr1_1:2279747-2279766 Msa0000880:intron 35.0%
! ACTTTTGAGCATGATTGTGT+TGG + chr1_1:2279996-2280015 Msa0000880:CDS 35.0%
TATGAAACAGTGGCAAATCA+AGG - chr1_1:2280133-2280152 None:intergenic 35.0%
! TTATAAAGGAGTACAACCAC+AGG + chr1_1:2280215-2280234 Msa0000880:CDS 35.0%
GCAACTATAAAATGCCAAAC+TGG - chr1_1:2280397-2280416 None:intergenic 35.0%
! GCATTTTATAGTTGCATCGT+GGG + chr1_1:2280402-2280421 Msa0000880:CDS 35.0%
TTACTTACCTGTCAAGATCA+AGG - chr1_1:2280450-2280469 None:intergenic 35.0%
! GCTAGATAAGTTAAGTTGTG+TGG + chr1_1:2280555-2280574 Msa0000880:intron 35.0%
AGATTGTTGGAAACAGCTTA+TGG + chr1_1:2280645-2280664 Msa0000880:intron 35.0%
TCTTTGTCGTACTTTAAGTC+GGG + chr1_1:2280856-2280875 Msa0000880:intron 35.0%
! AATAGTTTTCTTTGTTGGCG+GGG + chr1_1:2280927-2280946 Msa0000880:intron 35.0%
GAGAAAATGGAATGCAAGTA+GGG - chr1_1:2280993-2281012 None:intergenic 35.0%
AGAGAAAATGGAATGCAAGT+AGG - chr1_1:2280994-2281013 None:intergenic 35.0%
! CTCTAAAAGATAGTCAACAG+TGG - chr1_1:2281027-2281046 None:intergenic 35.0%
! ATTCTATATTGGCGGTGTTA+TGG + chr1_1:2281153-2281172 Msa0000880:CDS 35.0%
!! TTCTATATTGGCGGTGTTAT+GGG + chr1_1:2281154-2281173 Msa0000880:CDS 35.0%
GGAAAAAGAAACATGGATCA+CGG + chr1_1:2281175-2281194 Msa0000880:CDS 35.0%
TATCGGAGTGATGAACAAAA+TGG - chr1_1:2281275-2281294 None:intergenic 35.0%
TACATGTCAATACATGACAG+TGG - chr1_1:2281541-2281560 None:intergenic 35.0%
! GTCATGTATTGACATGTAGA+CGG + chr1_1:2281543-2281562 Msa0000880:three_prime_UTR 35.0%
! TCATGTATTGACATGTAGAC+GGG + chr1_1:2281544-2281563 Msa0000880:three_prime_UTR 35.0%
! GAGTCTTCATTTGTTCTAAG+AGG + chr1_1:2281620-2281639 Msa0000880:three_prime_UTR 35.0%
!! TCTTCATTTGTTCTAAGAGG+AGG + chr1_1:2281623-2281642 Msa0000880:three_prime_UTR 35.0%
!! CTTCATTTGTTCTAAGAGGA+GGG + chr1_1:2281624-2281643 Msa0000880:three_prime_UTR 35.0%
AAACAAGGTTTACCTTCGCA+CGG + chr1_1:2274429-2274448 Msa0000880:five_prime_UTR 40.0%
GTTGAAACAAGACAGCATCA+TGG - chr1_1:2274490-2274509 None:intergenic 40.0%
! AGGTTGTTGTTGTTGGTTGA+AGG - chr1_1:2274576-2274595 None:intergenic 40.0%
CTCCAAAGAAAGGATCCAAA+AGG - chr1_1:2274843-2274862 None:intergenic 40.0%
!! TTGGATCCTTTCTTTGGAGT+TGG + chr1_1:2274844-2274863 Msa0000880:intron 40.0%
!! TGGATCCTTTCTTTGGAGTT+GGG + chr1_1:2274845-2274864 Msa0000880:intron 40.0%
!! TCTTTGGAGTTGGGTAATTG+GGG + chr1_1:2274854-2274873 Msa0000880:intron 40.0%
AACCATCTCGTGAGACAAAA+TGG - chr1_1:2274899-2274918 None:intergenic 40.0%
! GTGGATCGTTTGCTAATGTA+TGG + chr1_1:2275009-2275028 Msa0000880:intron 40.0%
TTAGTGTATGTTTGGATCGG+CGG + chr1_1:2275130-2275149 Msa0000880:intron 40.0%
TCACAACACCACCAAACATA+CGG + chr1_1:2275207-2275226 Msa0000880:intron 40.0%
CTGTTTAACCGTATGTTTGG+TGG - chr1_1:2275218-2275237 None:intergenic 40.0%
! CCAATTCAATAATTTGGGGC+CGG + chr1_1:2275637-2275656 Msa0000880:intron 40.0%
! CAATTCAATAATTTGGGGCC+GGG + chr1_1:2275638-2275657 Msa0000880:intron 40.0%
TTGGTCATACAATACCCAAG+AGG - chr1_1:2275762-2275781 None:intergenic 40.0%
GTACACGCAAAAATTGGACA+AGG - chr1_1:2275818-2275837 None:intergenic 40.0%
!! AGTTTTGTATGACCAGGATC+AGG - chr1_1:2275859-2275878 None:intergenic 40.0%
!! AGACGAAGTTTTGTATGACC+AGG - chr1_1:2275865-2275884 None:intergenic 40.0%
AAACTTCGTCTATCACAGGA+AGG + chr1_1:2275874-2275893 Msa0000880:five_prime_UTR 40.0%
AACTTGGTTGCACTAGTCAA+AGG + chr1_1:2276194-2276213 Msa0000880:intron 40.0%
ACTTGGTTGCACTAGTCAAA+GGG + chr1_1:2276195-2276214 Msa0000880:intron 40.0%
GGGGAATTAGAAATTGCGAA+AGG + chr1_1:2276360-2276379 Msa0000880:intron 40.0%
GCAAAAAAGACTTTCCGGAA+CGG - chr1_1:2276615-2276634 None:intergenic 40.0%
!!! TGTTTTCTTAGGGTTTGGTG+TGG + chr1_1:2276777-2276796 Msa0000880:intron 40.0%
!!! GTTTTCTTAGGGTTTGGTGT+GGG + chr1_1:2276778-2276797 Msa0000880:intron 40.0%
ATGCGTGACACGAAAACAAA+AGG + chr1_1:2276805-2276824 Msa0000880:five_prime_UTR 40.0%
ACACGAAAACAAAAGGTGGA+TGG + chr1_1:2276812-2276831 Msa0000880:intron 40.0%
TTGGGGAACACCTATAGATT+TGG + chr1_1:2276938-2276957 Msa0000880:five_prime_UTR 40.0%
CAGAGCAAATATCCTGCAAA+AGG - chr1_1:2277129-2277148 None:intergenic 40.0%
! CTTTTGCAGGATATTTGCTC+TGG + chr1_1:2277127-2277146 Msa0000880:intron 40.0%
TTATGATGACTAACCGTCTC+AGG - chr1_1:2277188-2277207 None:intergenic 40.0%
AAAACGAGCTCATTTCTGAG+GGG - chr1_1:2277211-2277230 None:intergenic 40.0%
! CATCTCTAGACTCTCTTTTG+CGG + chr1_1:2277291-2277310 Msa0000880:five_prime_UTR 40.0%
! GAGCTCGCTGAAGAATTTTA+TGG + chr1_1:2277316-2277335 Msa0000880:five_prime_UTR 40.0%
CTTCACTCTATTCCAACACA+CGG - chr1_1:2277507-2277526 None:intergenic 40.0%
ATTAGATGAACGAGGAGCTA+AGG - chr1_1:2277542-2277561 None:intergenic 40.0%
ACTTACGCAGAAAATCACGT+TGG - chr1_1:2277672-2277691 None:intergenic 40.0%
!! AGAGTTGACATGATGGACAA+GGG - chr1_1:2277780-2277799 None:intergenic 40.0%
!! TAGAGTTGACATGATGGACA+AGG - chr1_1:2277781-2277800 None:intergenic 40.0%
GTCCATCATGTCAACTCTAT+TGG + chr1_1:2277782-2277801 Msa0000880:intron 40.0%
TTCCCTTCTGCAGGATATTA+AGG - chr1_1:2277821-2277840 None:intergenic 40.0%
AGGGAAATCAGTGCAACAAA+TGG + chr1_1:2277835-2277854 Msa0000880:CDS 40.0%
GAAATCAGTGCAACAAATGG+TGG + chr1_1:2277838-2277857 Msa0000880:CDS 40.0%
CAATCAAATCCGGGATTCAT+TGG + chr1_1:2278094-2278113 Msa0000880:CDS 40.0%
CCATAATAGCCAATGAATCC+CGG - chr1_1:2278106-2278125 None:intergenic 40.0%
! CGGGATTCATTGGCTATTAT+GGG + chr1_1:2278104-2278123 Msa0000880:CDS 40.0%
ATGAGGAAGACACATACTTG+TGG - chr1_1:2278155-2278174 None:intergenic 40.0%
TTTCCATTTCAACCCTAACG+TGG + chr1_1:2278198-2278217 Msa0000880:intron 40.0%
ATTCCACGTTAGGGTTGAAA+TGG - chr1_1:2278204-2278223 None:intergenic 40.0%
! GACAAAGCTTTGTGACTTGA+AGG + chr1_1:2278312-2278331 Msa0000880:CDS 40.0%
! AAGCTTTGTGACTTGAAGGA+TGG + chr1_1:2278316-2278335 Msa0000880:CDS 40.0%
! AGCTTTGTGACTTGAAGGAT+GGG + chr1_1:2278317-2278336 Msa0000880:CDS 40.0%
ATCCGTCCAAAGATTGTACA+AGG + chr1_1:2278400-2278419 Msa0000880:CDS 40.0%
AAAAACCAAGTACCTGCTTC+AGG - chr1_1:2278459-2278478 None:intergenic 40.0%
TATGGAACCTCTCCAACATT+GGG + chr1_1:2278632-2278651 Msa0000880:intron 40.0%
! AATTTGGTTCACAGAGCGAA+GGG - chr1_1:2278792-2278811 None:intergenic 40.0%
! TAATTTGGTTCACAGAGCGA+AGG - chr1_1:2278793-2278812 None:intergenic 40.0%
TTTGTTTGATTGAGAGGGAG+GGG - chr1_1:2278833-2278852 None:intergenic 40.0%
! GTTTGTTTGGTTCAAAGGAG+GGG - chr1_1:2278882-2278901 None:intergenic 40.0%
! GGTTTGTTTGGTTCAAAGGA+GGG - chr1_1:2278883-2278902 None:intergenic 40.0%
GATACTTGAAGCCTTGAACA+AGG + chr1_1:2279063-2279082 Msa0000880:intron 40.0%
! TGAAGATATCCTTCTGGAAG+AGG - chr1_1:2279190-2279209 None:intergenic 40.0%
GAAGCTTGAAGATATCCTTC+TGG - chr1_1:2279196-2279215 None:intergenic 40.0%
! GCATTCGATCAGCAACATTT+TGG + chr1_1:2279247-2279266 Msa0000880:CDS 40.0%
GGGAGCTTGGAAAAGAAAAT+AGG + chr1_1:2279352-2279371 Msa0000880:intron 40.0%
AAGACACTAGCAACAAACAC+AGG - chr1_1:2279521-2279540 None:intergenic 40.0%
AGTTCTCAAGCTTCCTTCAA+TGG + chr1_1:2279938-2279957 Msa0000880:CDS 40.0%
ACCTTCAAAAGCAAACTACG+AGG + chr1_1:2280019-2280038 Msa0000880:CDS 40.0%
CCTTCAAAAGCAAACTACGA+GGG + chr1_1:2280020-2280039 Msa0000880:CDS 40.0%
CAGTGGCAAATCAAGGAAAA+TGG - chr1_1:2280126-2280145 None:intergenic 40.0%
! ACAACCACAGGCTTTTCAAT+TGG + chr1_1:2280227-2280246 Msa0000880:CDS 40.0%
!! TATTTCTGGAGACCTACACA+AGG + chr1_1:2280338-2280357 Msa0000880:CDS 40.0%
! AGACCTACACAAGGTTGTTT+TGG + chr1_1:2280347-2280366 Msa0000880:CDS 40.0%
TGACCAAAACAACCTTGTGT+AGG - chr1_1:2280353-2280372 None:intergenic 40.0%
CACTTTACTACAACCCAGTT+TGG + chr1_1:2280380-2280399 Msa0000880:CDS 40.0%
! GGCATTTTATAGTTGCATCG+TGG + chr1_1:2280401-2280420 Msa0000880:CDS 40.0%
TGTGTGGTTTCATGACTCTT+AGG + chr1_1:2280571-2280590 Msa0000880:intron 40.0%
GTGTGGTTTCATGACTCTTA+GGG + chr1_1:2280572-2280591 Msa0000880:intron 40.0%
AAATGGAATGCAAGTAGGGT+CGG - chr1_1:2280989-2281008 None:intergenic 40.0%
GGCCATTGCTTAAGAGAAAA+TGG - chr1_1:2281006-2281025 None:intergenic 40.0%
AAAAGAAACATGGATCACGG+TGG + chr1_1:2281178-2281197 Msa0000880:CDS 40.0%
TCATCACTCCGATATTCCTT+TGG + chr1_1:2281281-2281300 Msa0000880:three_prime_UTR 40.0%
CATCACTCCGATATTCCTTT+GGG + chr1_1:2281282-2281301 Msa0000880:three_prime_UTR 40.0%
AAATGAAAAAGCTCGCCCAA+AGG - chr1_1:2281300-2281319 None:intergenic 40.0%
! CAAGCACACAAAGTGTCAAA+TGG + chr1_1:2281363-2281382 Msa0000880:three_prime_UTR 40.0%
AAGTGTCAAATGGTGATCAG+AGG + chr1_1:2281373-2281392 Msa0000880:three_prime_UTR 40.0%
AGTGTCAAATGGTGATCAGA+GGG + chr1_1:2281374-2281393 Msa0000880:three_prime_UTR 40.0%
GTGCGAAGGTAAACCTTGTT+TGG - chr1_1:2274430-2274449 None:intergenic 45.0%
CTGAAAATCGAAAGGAACGG+AGG - chr1_1:2274596-2274615 None:intergenic 45.0%
!! AGCCATTTTGTCTCACGAGA+TGG + chr1_1:2274894-2274913 Msa0000880:intron 45.0%
! AGCTTTTGCCTCAGTGATTC+TGG - chr1_1:2275165-2275184 None:intergenic 45.0%
CCGGCCCCAAATTATTGAAT+TGG - chr1_1:2275640-2275659 None:intergenic 45.0%
AACAAACCCCATTGCATCTG+TGG + chr1_1:2275918-2275937 Msa0000880:five_prime_UTR 45.0%
TTACTGCCACAGATGCAATG+GGG - chr1_1:2275927-2275946 None:intergenic 45.0%
CTTACTGCCACAGATGCAAT+GGG - chr1_1:2275928-2275947 None:intergenic 45.0%
ACTTACTGCCACAGATGCAA+TGG - chr1_1:2275929-2275948 None:intergenic 45.0%
AAAGACTTTCCGGAACGGTA+CGG - chr1_1:2276610-2276629 None:intergenic 45.0%
CGTGACACGAAAACAAAAGG+TGG + chr1_1:2276808-2276827 Msa0000880:intron 45.0%
! TGCGCTGATCTTGTATTCTG+TGG + chr1_1:2277053-2277072 Msa0000880:intron 45.0%
CGTGTGTTGGAATAGAGTGA+AGG + chr1_1:2277505-2277524 Msa0000880:CDS 45.0%
CAGGTTCAAATGCAACATCC+TGG - chr1_1:2277630-2277649 None:intergenic 45.0%
TTGGATAAGCCACAAGAGCT+TGG - chr1_1:2277653-2277672 None:intergenic 45.0%
! CCGGGATTCATTGGCTATTA+TGG + chr1_1:2278103-2278122 Msa0000880:CDS 45.0%
GCTTTGTGACTTGAAGGATG+GGG + chr1_1:2278318-2278337 Msa0000880:CDS 45.0%
GTTTGTTTCCTTCCTGAAGC+AGG + chr1_1:2278444-2278463 Msa0000880:CDS 45.0%
ATGTTGGAGAGGTTCCATAG+AGG - chr1_1:2278631-2278650 None:intergenic 45.0%
CTATGGAACCTCTCCAACAT+TGG + chr1_1:2278631-2278650 Msa0000880:intron 45.0%
CAAATCTCCCAATGTTGGAG+AGG - chr1_1:2278642-2278661 None:intergenic 45.0%
CTCTCCAACATTGGGAGATT+TGG + chr1_1:2278640-2278659 Msa0000880:intron 45.0%
TCCAACATTGGGAGATTTGG+AGG + chr1_1:2278643-2278662 Msa0000880:intron 45.0%
CCAACATTGGGAGATTTGGA+GGG + chr1_1:2278644-2278663 Msa0000880:intron 45.0%
CAACATTGGGAGATTTGGAG+GGG + chr1_1:2278645-2278664 Msa0000880:intron 45.0%
TGGTTCAAAGGAGGGGAAAA+GGG - chr1_1:2278875-2278894 None:intergenic 45.0%
TTGGTTCAAAGGAGGGGAAA+AGG - chr1_1:2278876-2278895 None:intergenic 45.0%
! GGGTTTGTTTGGTTCAAAGG+AGG - chr1_1:2278884-2278903 None:intergenic 45.0%
TGGAATCTCTCCCTTGTTCA+AGG - chr1_1:2279077-2279096 None:intergenic 45.0%
AAGGGAGAGATTCCATCAAC+AGG + chr1_1:2279082-2279101 Msa0000880:CDS 45.0%
TCCATCAACAGGTTCTCTTG+TGG + chr1_1:2279093-2279112 Msa0000880:CDS 45.0%
TCCACAAGAGAACCTGTTGA+TGG - chr1_1:2279097-2279116 None:intergenic 45.0%
CAGTGAAAAGATGGCCACAT+TGG + chr1_1:2279159-2279178 Msa0000880:CDS 45.0%
TCTTCAAGCTTCCCATGACA+TGG + chr1_1:2279204-2279223 Msa0000880:CDS 45.0%
TTGCTGATCGAATGCTTGCA+TGG - chr1_1:2279242-2279261 None:intergenic 45.0%
CTGACTTCTTAGCATGGTGA+CGG - chr1_1:2279273-2279292 None:intergenic 45.0%
TAAGAAGTCAGTCACGCAAC+TGG + chr1_1:2279282-2279301 Msa0000880:CDS 45.0%
TTGTTGCTAGTGTCTTGCGT+AGG + chr1_1:2279525-2279544 Msa0000880:intron 45.0%
TGTTGCTAGTGTCTTGCGTA+GGG + chr1_1:2279526-2279545 Msa0000880:intron 45.0%
GAAGCTTGAGAACTTGAAGC+TGG - chr1_1:2279932-2279951 None:intergenic 45.0%
!!! CCCTCGTAGTTTGCTTTTGA+AGG - chr1_1:2280023-2280042 None:intergenic 45.0%
CCAACCAATTGAAAAGCCTG+TGG - chr1_1:2280234-2280253 None:intergenic 45.0%
! CCACAGGCTTTTCAATTGGT+TGG + chr1_1:2280231-2280250 Msa0000880:CDS 45.0%
! CAGGCTTTTCAATTGGTTGG+TGG + chr1_1:2280234-2280253 Msa0000880:CDS 45.0%
ACCTGTCAAGATCAAGGACT+GGG - chr1_1:2280444-2280463 None:intergenic 45.0%
TACCTGTCAAGATCAAGGAC+TGG - chr1_1:2280445-2280464 None:intergenic 45.0%
! GGGACTAAATCCCTTGCTAT+AGG - chr1_1:2280953-2280972 None:intergenic 45.0%
! TAGGGTCGGCTCAAGTATAT+GGG - chr1_1:2280975-2280994 None:intergenic 45.0%
AAGCTCGCCCAAAGGAATAT+CGG - chr1_1:2281292-2281311 None:intergenic 45.0%
TGCTTGCAACAGAACTAGGT+AGG - chr1_1:2281349-2281368 None:intergenic 45.0%
TGTGTGCTTGCAACAGAACT+AGG - chr1_1:2281353-2281372 None:intergenic 45.0%
! GGAACGGAGGTTGTTGTTGT+TGG - chr1_1:2274583-2274602 None:intergenic 50.0%
GAGACTTGCCAGAATCACTG+AGG + chr1_1:2275154-2275173 Msa0000880:intron 50.0%
CCAGGATCAGGTTCGACAAT+GGG - chr1_1:2275847-2275866 None:intergenic 50.0%
ACCAGGATCAGGTTCGACAA+TGG - chr1_1:2275848-2275867 None:intergenic 50.0%
TCGTCTATCACAGGAAGGCT+TGG + chr1_1:2275879-2275898 Msa0000880:five_prime_UTR 50.0%
TCTATCACAGGAAGGCTTGG+AGG + chr1_1:2275882-2275901 Msa0000880:five_prime_UTR 50.0%
GTAATTGGACCGTACCGTTC+CGG + chr1_1:2276598-2276617 Msa0000880:five_prime_UTR 50.0%
CACTTGCAATGTCCGTGTGT+TGG + chr1_1:2277492-2277511 Msa0000880:exon 50.0%
!!! TTGCTGGCTTTTATAGGGCC+AGG + chr1_1:2277609-2277628 Msa0000880:intron 50.0%
TTGAACCTGCCAAGCTCTTG+TGG + chr1_1:2277641-2277660 Msa0000880:CDS 50.0%
ATAAGCCACAAGAGCTTGGC+AGG - chr1_1:2277649-2277668 None:intergenic 50.0%
!! TGCACTGATTTCCCTTCTGC+AGG - chr1_1:2277830-2277849 None:intergenic 50.0%
TCAAACAGCCACATCTCCAG+CGG + chr1_1:2278290-2278309 Msa0000880:intron 50.0%
! AGTCACAAAGCTTTGTCCGC+TGG - chr1_1:2278309-2278328 None:intergenic 50.0%
TCCTTCCTGAAGCAGGTACT+TGG + chr1_1:2278451-2278470 Msa0000880:intron 50.0%
ACCAAGTACCTGCTTCAGGA+AGG - chr1_1:2278455-2278474 None:intergenic 50.0%
CCCTCCAAATCTCCCAATGT+TGG - chr1_1:2278647-2278666 None:intergenic 50.0%
TCAAAGGAGGGGAAAAGGGA+AGG - chr1_1:2278871-2278890 None:intergenic 50.0%
TGGAAGAGGTAGAGCCAATG+TGG - chr1_1:2279176-2279195 None:intergenic 50.0%
!! TTGGCTCTACCTCTTCCAGA+AGG + chr1_1:2279178-2279197 Msa0000880:CDS 50.0%
GTCACCTCTAGCCATGTCAT+GGG - chr1_1:2279218-2279237 None:intergenic 50.0%
! GCGTGACTGACTTCTTAGCA+TGG - chr1_1:2279279-2279298 None:intergenic 50.0%
GTGAGATGCTCGACCTATGA+AGG + chr1_1:2279575-2279594 Msa0000880:intron 50.0%
GTCCATCATGTCCTCGCAAT+CGG - chr1_1:2279910-2279929 None:intergenic 50.0%
AGCAAACTACGAGGGACGTA+TGG + chr1_1:2280028-2280047 Msa0000880:CDS 50.0%
! AGGGTCGGCTCAAGTATATG+GGG - chr1_1:2280974-2280993 None:intergenic 50.0%
! GTAGGGTCGGCTCAAGTATA+TGG - chr1_1:2280976-2280995 None:intergenic 50.0%
AGAACTAGGTAGGTGCATGC+AGG - chr1_1:2281339-2281358 None:intergenic 50.0%
TCAAGCCACAGAAGCTGTGT+GGG - chr1_1:2281410-2281429 None:intergenic 50.0%
ATCAAGCCACAGAAGCTGTG+TGG - chr1_1:2281411-2281430 None:intergenic 50.0%
GGTTTACCTTCGCACGGACA+AGG + chr1_1:2274435-2274454 Msa0000880:five_prime_UTR 55.0%
TTCGATCCTTGTCCGTGCGA+AGG - chr1_1:2274444-2274463 None:intergenic 55.0%
CCCATTGTCGAACCTGATCC+TGG + chr1_1:2275844-2275863 Msa0000880:five_prime_UTR 55.0%
GAACGAGGAGCTAAGGCATG+TGG - chr1_1:2277535-2277554 None:intergenic 55.0%
! AGCTTTGTCCGCTGGAGATG+TGG - chr1_1:2278301-2278320 None:intergenic 55.0%
TTCCATAGAGGTCGAGGTGG+GGG - chr1_1:2278619-2278638 None:intergenic 55.0%
GTTCCATAGAGGTCGAGGTG+GGG - chr1_1:2278620-2278639 None:intergenic 55.0%
GGTTCCATAGAGGTCGAGGT+GGG - chr1_1:2278621-2278640 None:intergenic 55.0%
AGGTTCCATAGAGGTCGAGG+TGG - chr1_1:2278622-2278641 None:intergenic 55.0%
GAGAGGTTCCATAGAGGTCG+AGG - chr1_1:2278625-2278644 None:intergenic 55.0%
TTGATTGAGAGGGAGGGGAG+AGG - chr1_1:2278828-2278847 None:intergenic 55.0%
GCTTCCCATGACATGGCTAG+AGG + chr1_1:2279211-2279230 Msa0000880:CDS 55.0%
CGTCACCTCTAGCCATGTCA+TGG - chr1_1:2279219-2279238 None:intergenic 55.0%
! CACCGATTGCGAGGACATGA+TGG + chr1_1:2279905-2279924 Msa0000880:CDS 55.0%
CTACGAGGGACGTATGGCAA+AGG + chr1_1:2280034-2280053 Msa0000880:CDS 55.0%
AGGGACGTATGGCAAAGGTC+TGG + chr1_1:2280039-2280058 Msa0000880:intron 55.0%
TTTCTCCCTCGTCACGGTTG+TGG + chr1_1:2280258-2280277 Msa0000880:CDS 55.0%
GCCCAGTCCTTGATCTTGAC+AGG + chr1_1:2280440-2280459 Msa0000880:CDS 55.0%
! GGGTCGGCTCAAGTATATGG+GGG - chr1_1:2280973-2280992 None:intergenic 55.0%
!! TGCAGATGGGCTATCCCACT+TGG + chr1_1:2281111-2281130 Msa0000880:intron 55.0%
CATCTCCCACACAGCTTCTG+TGG + chr1_1:2281402-2281421 Msa0000880:three_prime_UTR 55.0%
ATCCCCCACCTCGACCTCTA+TGG + chr1_1:2278614-2278633 Msa0000880:intron 60.0%
! GGCACTGTACACCGATTGCG+AGG + chr1_1:2279896-2279915 Msa0000880:CDS 60.0%
GGTGGCTTTCTCCCTCGTCA+CGG + chr1_1:2280252-2280271 Msa0000880:CDS 60.0%
TCCCTCGTCACGGTTGTGGT+TGG + chr1_1:2280262-2280281 Msa0000880:CDS 60.0%
GCCAACCACAACCGTGACGA+GGG - chr1_1:2280266-2280285 None:intergenic 60.0%
TCGTCACGGTTGTGGTTGGC+CGG + chr1_1:2280266-2280285 Msa0000880:CDS 60.0%
TGTTGGCGGGGCCTATAGCA+AGG + chr1_1:2280939-2280958 Msa0000880:intron 60.0%
GTTGGCGGGGCCTATAGCAA+GGG + chr1_1:2280940-2280959 Msa0000880:intron 60.0%
GGCCAACCACAACCGTGACG+AGG - chr1_1:2280267-2280286 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 2274402 2281677 2274402 ID=Msa0000880;Name=Msa0000880
chr1_1 mRNA 2274402 2281677 2274402 ID=Msa0000880-mRNA-1;Parent=Msa0000880;Name=Msa0000880-mRNA-1;_AED=0.15;_eAED=0.15;_QI=943|1|1|1|0.93|0.87|16|429|425
chr1_1 exon 2274402 2274733 2274402 ID=Msa0000880-mRNA-1:exon:456;Parent=Msa0000880-mRNA-1
chr1_1 exon 2275840 2275942 2275840 ID=Msa0000880-mRNA-1:exon:457;Parent=Msa0000880-mRNA-1
chr1_1 exon 2276598 2276667 2276598 ID=Msa0000880-mRNA-1:exon:458;Parent=Msa0000880-mRNA-1
chr1_1 exon 2276788 2276826 2276788 ID=Msa0000880-mRNA-1:exon:459;Parent=Msa0000880-mRNA-1
chr1_1 exon 2276928 2277045 2276928 ID=Msa0000880-mRNA-1:exon:460;Parent=Msa0000880-mRNA-1
chr1_1 exon 2277136 2277193 2277136 ID=Msa0000880-mRNA-1:exon:461;Parent=Msa0000880-mRNA-1
chr1_1 exon 2277277 2277526 2277277 ID=Msa0000880-mRNA-1:exon:462;Parent=Msa0000880-mRNA-1
chr1_1 exon 2277625 2277685 2277625 ID=Msa0000880-mRNA-1:exon:463;Parent=Msa0000880-mRNA-1
chr1_1 exon 2277834 2277893 2277834 ID=Msa0000880-mRNA-1:exon:464;Parent=Msa0000880-mRNA-1
chr1_1 exon 2277980 2277999 2277980 ID=Msa0000880-mRNA-1:exon:465;Parent=Msa0000880-mRNA-1
chr1_1 exon 2278092 2278157 2278092 ID=Msa0000880-mRNA-1:exon:466;Parent=Msa0000880-mRNA-1
chr1_1 exon 2278298 2278465 2278298 ID=Msa0000880-mRNA-1:exon:467;Parent=Msa0000880-mRNA-1
chr1_1 exon 2279064 2279321 2279064 ID=Msa0000880-mRNA-1:exon:468;Parent=Msa0000880-mRNA-1
chr1_1 exon 2279843 2280055 2279843 ID=Msa0000880-mRNA-1:exon:469;Parent=Msa0000880-mRNA-1
chr1_1 exon 2280190 2280461 2280190 ID=Msa0000880-mRNA-1:exon:470;Parent=Msa0000880-mRNA-1
chr1_1 exon 2281116 2281677 2281116 ID=Msa0000880-mRNA-1:exon:471;Parent=Msa0000880-mRNA-1
chr1_1 five_prime_UTR 2274402 2274733 2274402 ID=Msa0000880-mRNA-1:five_prime_utr;Parent=Msa0000880-mRNA-1
chr1_1 five_prime_UTR 2275840 2275942 2275840 ID=Msa0000880-mRNA-1:five_prime_utr;Parent=Msa0000880-mRNA-1
chr1_1 five_prime_UTR 2276598 2276667 2276598 ID=Msa0000880-mRNA-1:five_prime_utr;Parent=Msa0000880-mRNA-1
chr1_1 five_prime_UTR 2276788 2276826 2276788 ID=Msa0000880-mRNA-1:five_prime_utr;Parent=Msa0000880-mRNA-1
chr1_1 five_prime_UTR 2276928 2277045 2276928 ID=Msa0000880-mRNA-1:five_prime_utr;Parent=Msa0000880-mRNA-1
chr1_1 five_prime_UTR 2277136 2277193 2277136 ID=Msa0000880-mRNA-1:five_prime_utr;Parent=Msa0000880-mRNA-1
chr1_1 five_prime_UTR 2277277 2277499 2277277 ID=Msa0000880-mRNA-1:five_prime_utr;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2277500 2277526 2277500 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2277625 2277685 2277625 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2277834 2277893 2277834 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2277980 2277999 2277980 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2278092 2278157 2278092 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2278298 2278465 2278298 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2279064 2279321 2279064 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2279843 2280055 2279843 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2280190 2280461 2280190 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 CDS 2281116 2281248 2281116 ID=Msa0000880-mRNA-1:cds;Parent=Msa0000880-mRNA-1
chr1_1 three_prime_UTR 2281249 2281677 2281249 ID=Msa0000880-mRNA-1:three_prime_utr;Parent=Msa0000880-mRNA-1
Gene Sequence

>Msa0000880

ATGTCCGTGTGTTGGAATAGAGTGAAGGGCCAGGATGTTGCATTTGAACCTGCCAAGCTCTTGTGGCTTATCCAACGTGATTTTCTGCAAGGGAAATCAGTGCAACAAATGGTGGATGAAGCTCTTCGACAAGTCCCTAATAAAGATAGAGACAGAAATATTGATATGATCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAATAGTACGGCCTTTAGCTTACCACAACCACATCTCCAGCGGACAAAGCTTTGTGACTTGAAGGATGGGGAGCTTGATCCATCATATGTGAAGAAAAGGGAGAAGCTAAAAGAGCTTGTTTCTAGTATAATCCGTCCAAAGATTGTACAAGGAAAATCTCTAAATGGGAAAGAGTTTGTTTCCTTCCTGAAGCAGATACTTGAAGCCTTGAACAAGGGAGAGATTCCATCAACAGGTTCTCTTGTGGAGATTTTCAACAAGGACATTCTTGAAAGATGTCTTAAGTTATACAGTGAAAAGATGGCCACATTGGCTCTACCTCTTCCAGAAGGATATCTTCAAGCTTCCCATGACATGGCTAGAGGTGACGCCATGCAAGCATTCGATCAGCAACATTTTGGCCGTCACCATGCTAAGAAGTCAGTCACGCAACTGGATGAAGAAATAGATAAGGTATTTAAGAATGTCATTTTACAAAATGAATATAAATCTTCAAAGCTTTGTGAGGCACTGTACACCGATTGCGAGGACATGATGGACCAGCTTCAAGTTCTCAAGCTTCCTTCAATGGCAAAATTTAATGCAGGTCTCGAGAAATGCAATCGTACTTTTGAGCATGATTGTGTTGGACCTTCAAAAGCAAACTACGAGGGACGTATGGCAAAGATGTTGGTAAAGTCTAAGTCTCTATTTATAAAGGAGTACAACCACAGGCTTTTCAATTGGTTGGTGGCTTTCTCCCTCGTCACGGTTGTGGTTGGCCGGTTTATTATAAAGTTCATTTTGATTGAAATTGGAGGATGGTTACTTTTTATATTTCTGGAGACCTACACAAGGTTGTTTTGGTCAGCAGAGTCACTTTACTACAACCCAGTTTGGCATTTTATAGTTGCATCGTGGGAAACTCTTGTTTACAGCCCAGTCCTTGATCTTGACAGATGGGCTATCCCACTTGGTGTAATAATATCTTTTTTCATTCTATATTGGCGGTGTTATGGGAAAAAGAAACATGGATCACGGTGGCTATTACCATTATATAGCAGCAATAAAAATAGACCAAGAACAGACTAA
Protein sequence

>Msa0000880

MSVCWNRVKGQDVAFEPAKLLWLIQRDFLQGKSVQQMVDEALRQVPNKDRDRNIDMINQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDLKDGELDPSYVKKREKLKELVSSIIRPKIVQGKSLNGKEFVSFLKQILEALNKGEIPSTGSLVEIFNKDILERCLKLYSEKMATLALPLPEGYLQASHDMARGDAMQAFDQQHFGRHHAKKSVTQLDEEIDKVFKNVILQNEYKSSKLCEALYTDCEDMMDQLQVLKLPSMAKFNAGLEKCNRTFEHDCVGPSKANYEGRMAKMLVKSKSLFIKEYNHRLFNWLVAFSLVTVVVGRFIIKFILIEIGGWLLFIFLETYTRLFWSAESLYYNPVWHFIVASWETLVYSPVLDLDRWAIPLGVIISFFILYWRCYGKKKHGSRWLLPLYSSNKNRPRTD*