Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010820 | sp|Q28G05|SYF2_XENTR | 35.714 | 252 | 155 | 5 | 59 | 308 | 3 | 249 | 2.53e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0010820 | 0.803712 | 3.058553e-49 | -8.615850e-47 |
| Msa0010820 | Msa0029260 | 0.801523 | 8.648172e-49 | -8.615850e-47 |
| Msa0010820 | Msa0057140 | 0.825534 | 4.449054e-54 | -8.615850e-47 |
| Msa0010820 | Msa0061970 | 0.803042 | 4.209468e-49 | -8.615850e-47 |
| Msa0010820 | Msa0073460 | 0.807017 | 6.207481e-50 | -8.615850e-47 |
| Msa0010820 | Msa0073700 | 0.804943 | 1.694308e-49 | -8.615850e-47 |
| Msa0010820 | Msa0094920 | 0.832341 | 9.990074e-56 | -8.615850e-47 |
| Msa0010820 | Msa0096980 | 0.805044 | 1.614379e-49 | -8.615850e-47 |
| Msa0010820 | Msa0115390 | 0.803182 | 3.938306e-49 | -8.615850e-47 |
| Msa0010820 | Msa0127040 | 0.821016 | 5.051278e-53 | -8.615850e-47 |
| Msa0010820 | Msa0138160 | 0.959665 | 1.081771e-117 | -8.615850e-47 |
| Msa0010820 | Msa0145010 | 0.807439 | 5.052708e-50 | -8.615850e-47 |
| Msa0010820 | Msa0145150 | 0.801428 | 9.047718e-49 | -8.615850e-47 |
| Msa0010820 | Msa0166750 | 0.801206 | 1.004434e-48 | -8.615850e-47 |
| Msa0010820 | Msa0168720 | 0.802936 | 4.428871e-49 | -8.615850e-47 |
| Msa0010820 | Msa0172780 | 0.801933 | 7.126568e-49 | -8.615850e-47 |
| Msa0010820 | Msa0182280 | 0.826068 | 3.322584e-54 | -8.615850e-47 |
| Msa0010820 | Msa0183460 | 0.808787 | 2.608973e-50 | -8.615850e-47 |
| Msa0010820 | Msa0236270 | 0.804899 | 1.731062e-49 | -8.615850e-47 |
| Msa0010820 | Msa0251770 | 0.803983 | 2.686705e-49 | -8.615850e-47 |
| Msa0010820 | Msa0256330 | 0.801514 | 8.687323e-49 | -8.615850e-47 |
| Msa0010820 | Msa0260210 | 0.830244 | 3.275284e-55 | -8.615850e-47 |
| Msa0010820 | Msa0266210 | 0.812986 | 3.215920e-51 | -8.615850e-47 |
| Msa0010820 | Msa0271360 | 0.804504 | 2.092506e-49 | -8.615850e-47 |
| Msa0010820 | Msa0284880 | 0.807022 | 6.191131e-50 | -8.615850e-47 |
| Msa0010820 | Msa0287670 | 0.806861 | 6.696892e-50 | -8.615850e-47 |
| Msa0010820 | Msa0304290 | 0.828427 | 9.046702e-55 | -8.615850e-47 |
| Msa0010820 | Msa0304330 | 0.831080 | 2.043841e-55 | -8.615850e-47 |
| Msa0010820 | Msa0305890 | 0.814638 | 1.391248e-51 | -8.615850e-47 |
| Msa0010820 | Msa0308200 | 0.812413 | 4.293806e-51 | -8.615850e-47 |
| Msa0010820 | Msa0340810 | 0.813629 | 2.323192e-51 | -8.615850e-47 |
| Msa0010820 | Msa0376690 | 0.841072 | 5.932050e-58 | -8.615850e-47 |
| Msa0010820 | Msa0381700 | 0.800138 | 1.658748e-48 | -8.615850e-47 |
| Msa0010820 | Msa0392940 | 0.801093 | 1.059513e-48 | -8.615850e-47 |
| Msa0010820 | Msa0431670 | 0.815687 | 8.135015e-52 | -8.615850e-47 |
| Msa0010820 | Msa0465550 | 0.805984 | 1.024941e-49 | -8.615850e-47 |
| Msa0010820 | Msa0471590 | 0.814512 | 1.483471e-51 | -8.615850e-47 |
| Msa0010820 | Msa0479330 | 0.800113 | 1.678427e-48 | -8.615850e-47 |
| Msa0010820 | Msa0485120 | 0.812777 | 3.574246e-51 | -8.615850e-47 |
| Msa0010820 | Msa0489610 | 0.817190 | 3.750134e-52 | -8.615850e-47 |
| Msa0010820 | Msa0511490 | 0.842024 | 3.328188e-58 | -8.615850e-47 |
| Msa0010820 | Msa0513440 | 0.817015 | 4.105756e-52 | -8.615850e-47 |
| Msa0010820 | Msa0523680 | 0.807675 | 4.502012e-50 | -8.615850e-47 |
| Msa0010820 | Msa0527910 | 0.815182 | 1.053760e-51 | -8.615850e-47 |
| Msa0010820 | Msa0556860 | 0.808447 | 3.083900e-50 | -8.615850e-47 |
| Msa0010820 | Msa0571700 | 0.806986 | 6.300709e-50 | -8.615850e-47 |
| Msa0010820 | Msa0579370 | 0.830425 | 2.957466e-55 | -8.615850e-47 |
| Msa0010820 | Msa0589190 | 0.801413 | 9.111544e-49 | -8.615850e-47 |
| Msa0010820 | Msa0600610 | 0.828952 | 6.751936e-55 | -8.615850e-47 |
| Msa0010820 | Msa0607510 | 0.816082 | 6.644109e-52 | -8.615850e-47 |
| Msa0010820 | Msa0614990 | 0.835139 | 1.996805e-56 | -8.615850e-47 |
| Msa0010820 | Msa0626940 | 0.800802 | 1.214913e-48 | -8.615850e-47 |
| Msa0010820 | Msa0628290 | 0.807503 | 4.896711e-50 | -8.615850e-47 |
| Msa0010820 | Msa0643320 | 0.804921 | 1.712278e-49 | -8.615850e-47 |
| Msa0010820 | Msa0669720 | 0.807427 | 5.082905e-50 | -8.615850e-47 |
| Msa0010820 | Msa0669760 | 0.801646 | 8.160018e-49 | -8.615850e-47 |
| Msa0010820 | Msa0683140 | 0.815343 | 9.703159e-52 | -8.615850e-47 |
| Msa0010820 | Msa0683600 | 0.801240 | 9.884691e-49 | -8.615850e-47 |
| Msa0010820 | Msa0692940 | 0.811107 | 8.261332e-51 | -8.615850e-47 |
| Msa0010820 | Msa0726830 | 0.816265 | 6.045416e-52 | -8.615850e-47 |
| Msa0010820 | Msa0726860 | 0.817836 | 2.682372e-52 | -8.615850e-47 |
| Msa0010820 | Msa0735310 | 0.803101 | 4.093071e-49 | -8.615850e-47 |
| Msa0010820 | Msa0750430 | 0.810959 | 8.894165e-51 | -8.615850e-47 |
| Msa0010820 | Msa0772480 | 0.801829 | 7.487025e-49 | -8.615850e-47 |
| Msa0010820 | Msa0793390 | 0.841190 | 5.522570e-58 | -8.615850e-47 |
| Msa0010820 | Msa0798440 | 0.811592 | 6.481829e-51 | -8.615850e-47 |
| Msa0010820 | Msa0805500 | 0.828775 | 7.452154e-55 | -8.615850e-47 |
| Msa0010820 | Msa0809770 | 0.803413 | 3.528164e-49 | -8.615850e-47 |
| Msa0010820 | Msa0823500 | 0.806780 | 6.964680e-50 | -8.615850e-47 |
| Msa0010820 | Msa0847080 | 0.824547 | 7.607584e-54 | -8.615850e-47 |
| Msa0010820 | Msa0862500 | 0.809361 | 1.965500e-50 | -8.615850e-47 |
| Msa0010820 | Msa0869120 | 0.818767 | 1.650914e-52 | -8.615850e-47 |
| Msa0010820 | Msa0901450 | 0.805872 | 1.082268e-49 | -8.615850e-47 |
| Msa0010820 | Msa0930140 | 0.838297 | 3.126664e-57 | -8.615850e-47 |
| Msa0010820 | Msa0933290 | 0.851002 | 1.178049e-60 | -8.615850e-47 |
| Msa0010820 | Msa0937330 | 0.841349 | 5.015161e-58 | -8.615850e-47 |
| Msa0010820 | Msa0942070 | 0.826729 | 2.311951e-54 | -8.615850e-47 |
| Msa0010820 | Msa0974630 | 0.804002 | 2.661880e-49 | -8.615850e-47 |
| Msa0010820 | Msa0993240 | 0.811482 | 6.847093e-51 | -8.615850e-47 |
| Msa0010820 | Msa1021540 | 0.826138 | 3.196895e-54 | -8.615850e-47 |
| Msa0010820 | Msa1050200 | 0.809855 | 1.539139e-50 | -8.615850e-47 |
| Msa0010820 | Msa1053260 | 0.801185 | 1.014523e-48 | -8.615850e-47 |
| Msa0010820 | Msa1089840 | 0.816195 | 6.267731e-52 | -8.615850e-47 |
| Msa0010820 | Msa1093330 | 0.801451 | 8.948102e-49 | -8.615850e-47 |
| Msa0010820 | Msa1144970 | 0.817798 | 2.735247e-52 | -8.615850e-47 |
| Msa0010820 | Msa1152520 | 0.811197 | 7.898180e-51 | -8.615850e-47 |
| Msa0010820 | Msa1176360 | 0.815526 | 8.838261e-52 | -8.615850e-47 |
| Msa0010820 | Msa1179950 | 0.804619 | 1.980520e-49 | -8.615850e-47 |
| Msa0010820 | Msa1179980 | 0.810580 | 1.074154e-50 | -8.615850e-47 |
| Msa0010820 | Msa1253810 | 0.802972 | 4.352741e-49 | -8.615850e-47 |
| Msa0010820 | Msa1269300 | 0.818309 | 2.096033e-52 | -8.615850e-47 |
| Msa0010820 | Msa1270620 | 0.801421 | 9.074634e-49 | -8.615850e-47 |
| Msa0010820 | Msa1270690 | 0.808670 | 2.763779e-50 | -8.615850e-47 |
| Msa0010820 | Msa1282920 | 0.803159 | 3.982441e-49 | -8.615850e-47 |
| Msa0010820 | Msa1303160 | 0.819361 | 1.209574e-52 | -8.615850e-47 |
| Msa0010820 | Msa1306750 | 0.807445 | 5.036352e-50 | -8.615850e-47 |
| Msa0010820 | Msa1306990 | 0.805755 | 1.145187e-49 | -8.615850e-47 |
| Msa0010820 | Msa1332220 | 0.801698 | 7.963422e-49 | -8.615850e-47 |
| Msa0010820 | Msa1350690 | 0.807234 | 5.584249e-50 | -8.615850e-47 |
| Msa0010820 | Msa1423910 | 0.807398 | 5.155451e-50 | -8.615850e-47 |
| Msa0010820 | Msa1426920 | 0.808722 | 2.692774e-50 | -8.615850e-47 |
| Msa0010820 | Msa1431040 | 0.806132 | 9.543196e-50 | -8.615850e-47 |
| Msa0010820 | Msa1435370 | 0.812424 | 4.270196e-51 | -8.615850e-47 |
| Msa0010820 | Msa1440910 | 0.802529 | 5.372029e-49 | -8.615850e-47 |
| Msa0010820 | Msa1452470 | 0.818616 | 1.786633e-52 | -8.615850e-47 |
| Msa0010820 | Msa1461280 | 0.878426 | 2.836309e-69 | -8.615850e-47 |
| Msa0010820 | Msa1465960 | 0.806130 | 9.553695e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010820 | MtrunA17_Chr1g0211051 | 98.710 | 310 | 2 | 1 | 1 | 310 | 1 | 308 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010820 | AT2G16860.2 | 66.774 | 310 | 91 | 3 | 1 | 310 | 1 | 298 | 4.97e-144 | 408 |
| Msa0010820 | AT2G16860.1 | 66.774 | 310 | 91 | 3 | 1 | 310 | 1 | 298 | 4.97e-144 | 408 |
Find 96 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCTGGCAGAGAGTTT+GGG | 0.193796 | 1_1:-16346856 | None:intergenic |
| TTAATATTTGACAATTTAAA+AGG | 0.201018 | 1_1:+16345992 | Msa0010820:five_prime_UTR |
| TTTCTGTCTGGCAGAGAGTT+TGG | 0.214726 | 1_1:-16346857 | None:intergenic |
| ATATTACCTAAAACCTGTTT+AGG | 0.228515 | 1_1:+16346037 | Msa0010820:five_prime_UTR |
| CTAATGCTGGGAAGTTTAAA+TGG | 0.249290 | 1_1:+16349226 | Msa0010820:three_prime_UTR |
| CTAACCAGATTGAGTGAGTT+TGG | 0.276157 | 1_1:-16346400 | None:intergenic |
| TACATCGACCTCAATGTTCT+TGG | 0.295867 | 1_1:-16348777 | None:intergenic |
| TTCTCTGGAGCAGGCTGATC+AGG | 0.298134 | 1_1:-16346814 | None:intergenic |
| TATTACCTAAAACCTGTTTA+GGG | 0.310993 | 1_1:+16346038 | Msa0010820:five_prime_UTR |
| GAAGCATCACGGTAGAATTC+TGG | 0.315653 | 1_1:-16348830 | None:intergenic |
| TTTGACAATTTAAAAGGATT+AGG | 0.321269 | 1_1:+16345998 | Msa0010820:five_prime_UTR |
| CAGAAGAGAAATACAAGAAA+TGG | 0.332825 | 1_1:+16347181 | Msa0010820:CDS |
| GATGGAGTTGAGAGCTAAAA+TGG | 0.334885 | 1_1:+16346885 | Msa0010820:CDS |
| AAGATATTTAATCCCTAAAC+AGG | 0.340130 | 1_1:-16346050 | None:intergenic |
| GATTCAAGTCATTTGCATCT+AGG | 0.359899 | 1_1:-16349438 | None:intergenic |
| GACAGTATACCTTTCCATAC+TGG | 0.367957 | 1_1:-16348859 | None:intergenic |
| CGAGCGAGGAACTGCATTGC+CGG | 0.368519 | 1_1:+16349157 | Msa0010820:CDS |
| GGAAAACTTCTTGATGCAAA+TGG | 0.374108 | 1_1:+16347114 | Msa0010820:CDS |
| TCTCATTGTTATTCTAATGC+TGG | 0.378311 | 1_1:+16349213 | Msa0010820:three_prime_UTR |
| TCATCAGGAGACAACTCATC+TGG | 0.396965 | 1_1:-16346742 | None:intergenic |
| ATTACTGGCGTTCCGGCAAT+CGG | 0.404996 | 1_1:-16346331 | None:intergenic |
| AAGAAGATTGAACGGGCCTT+TGG | 0.407954 | 1_1:+16349104 | Msa0010820:CDS |
| TCCTCATTGTTCTCTGGAGC+AGG | 0.408226 | 1_1:-16346823 | None:intergenic |
| AGCACCGATTTCTCAGAATT+CGG | 0.412374 | 1_1:-16346140 | None:intergenic |
| TCTTGTTGAAATGCTCATTA+CGG | 0.414024 | 1_1:-16349085 | None:intergenic |
| AAATGGTGGATTGCGTTCTC+TGG | 0.417439 | 1_1:+16349243 | Msa0010820:three_prime_UTR |
| GAAAAGGATTACTGGCGTTC+CGG | 0.418188 | 1_1:-16346338 | None:intergenic |
| AGGATCCTGCTCCATTCGGC+TGG | 0.431794 | 1_1:+16347208 | Msa0010820:CDS |
| GAGATGTGCATCCCGATTGC+CGG | 0.431903 | 1_1:+16346319 | Msa0010820:CDS |
| CTCATTGTTATTCTAATGCT+GGG | 0.435726 | 1_1:+16349214 | Msa0010820:three_prime_UTR |
| CAAGCCAAACTCACTCAATC+TGG | 0.442251 | 1_1:+16346396 | Msa0010820:CDS |
| CAGGATGGTACAAGAACTTA+AGG | 0.443877 | 1_1:+16348986 | Msa0010820:CDS |
| AAAACGTAATCAAATTGAAA+TGG | 0.446058 | 1_1:+16347005 | Msa0010820:CDS |
| GATGCTTCAAGTCTCCAGTA+TGG | 0.454556 | 1_1:+16348845 | Msa0010820:CDS |
| TCATCATGCATCCCCTCATC+AGG | 0.456108 | 1_1:-16346757 | None:intergenic |
| GAGCCATCCTCATTGTTCTC+TGG | 0.465692 | 1_1:-16346829 | None:intergenic |
| ACATTCGTGAAAAGGATTAC+TGG | 0.473926 | 1_1:-16346346 | None:intergenic |
| TAATCAGTACATTCGTGAAA+AGG | 0.476136 | 1_1:-16346354 | None:intergenic |
| AGAAGAGAAATACAAGAAAT+GGG | 0.476799 | 1_1:+16347182 | Msa0010820:CDS |
| AATTCCGAATTCTGAGAAAT+CGG | 0.481761 | 1_1:+16346136 | Msa0010820:five_prime_UTR |
| GGAGGCTCCAACAGAGTCTA+GGG | 0.490980 | 1_1:+16347047 | Msa0010820:CDS |
| TCAGAATTCGGAATTCGATT+CGG | 0.493598 | 1_1:-16346128 | None:intergenic |
| TGGAGGCTCCAACAGAGTCT+AGG | 0.495220 | 1_1:+16347046 | Msa0010820:CDS |
| CCATCCCAGCCGAATGGAGC+AGG | 0.495866 | 1_1:-16347213 | None:intergenic |
| TTGAGTTTGAAGCATTTCCT+TGG | 0.508471 | 1_1:+16349413 | Msa0010820:three_prime_UTR |
| TTTCAACAAGAAGATTGAAC+GGG | 0.513427 | 1_1:+16349097 | Msa0010820:CDS |
| CCTGCTCCATTCGGCTGGGA+TGG | 0.514280 | 1_1:+16347213 | Msa0010820:CDS |
| CCTCAGAGGATAAGATTGAC+AGG | 0.514772 | 1_1:+16348967 | Msa0010820:CDS |
| CGATTGAACGAACCTGGGTC+AGG | 0.524556 | 1_1:-16346179 | None:intergenic |
| ACTTCTTGATGCAAATGGAC+TGG | 0.525736 | 1_1:+16347119 | Msa0010820:CDS |
| GGCAATCGGGATGCACATCT+CGG | 0.536567 | 1_1:-16346317 | None:intergenic |
| TTACTGGCGTTCCGGCAATC+GGG | 0.540658 | 1_1:-16346330 | None:intergenic |
| TGGTACAAGAACTTAAGGAT+AGG | 0.540824 | 1_1:+16348991 | Msa0010820:CDS |
| GATGAGGGGATGCATGATGA+TGG | 0.547228 | 1_1:+16346760 | Msa0010820:CDS |
| GAGAAGGATCCTGCTCCATT+CGG | 0.549251 | 1_1:+16347204 | Msa0010820:CDS |
| GAAACACCCCTAGACTCTGT+TGG | 0.552933 | 1_1:-16347054 | None:intergenic |
| CATCTGGGATGGCTTGCTCA+TGG | 0.554106 | 1_1:-16346726 | None:intergenic |
| GATGAGTTGTCTCCTGATGA+GGG | 0.554331 | 1_1:+16346745 | Msa0010820:CDS |
| GAAATACAAGAAATGGGAGA+AGG | 0.559598 | 1_1:+16347188 | Msa0010820:CDS |
| GGCTAATGAAAAGAAGAGGA+TGG | 0.564931 | 1_1:+16347026 | Msa0010820:CDS |
| AGAAACGTAGGGCATTTAGC+AGG | 0.569318 | 1_1:+16349018 | Msa0010820:CDS |
| AGATGAGTTGTCTCCTGATG+AGG | 0.572851 | 1_1:+16346744 | Msa0010820:CDS |
| GGTACAAGAACTTAAGGATA+GGG | 0.574451 | 1_1:+16348992 | Msa0010820:CDS |
| CCTGTCAATCTTATCCTCTG+AGG | 0.574499 | 1_1:-16348967 | None:intergenic |
| CATCAGGAGACAACTCATCT+GGG | 0.581072 | 1_1:-16346741 | None:intergenic |
| AACATACCATCCCAGCCGAA+TGG | 0.583714 | 1_1:-16347219 | None:intergenic |
| GGATCCTGCTCCATTCGGCT+GGG | 0.585839 | 1_1:+16347209 | Msa0010820:CDS |
| CTCCAATGTGTATTTACCAA+AGG | 0.590665 | 1_1:-16349120 | None:intergenic |
| AGAGGATAAGATTGACAGGA+TGG | 0.594250 | 1_1:+16348971 | Msa0010820:CDS |
| ACTGCAGAAGCAAATCAGTC+CGG | 0.596042 | 1_1:-16349176 | None:intergenic |
| AGGATAGGGACGAGAAACGT+AGG | 0.596930 | 1_1:+16349006 | Msa0010820:CDS |
| ATTTCAACAAGAAGATTGAA+CGG | 0.602140 | 1_1:+16349096 | Msa0010820:CDS |
| AGGAGACAACTCATCTGGGA+TGG | 0.602375 | 1_1:-16346737 | None:intergenic |
| GGCCTTTGGTAAATACACAT+TGG | 0.602906 | 1_1:+16349118 | Msa0010820:CDS |
| AGCAGAAGTGGCTTGACGAT+AGG | 0.605628 | 1_1:+16347079 | Msa0010820:CDS |
| ATGCTGGGAAGTTTAAATGG+TGG | 0.609597 | 1_1:+16349229 | Msa0010820:three_prime_UTR |
| AAATGGCTAATGAAAAGAAG+AGG | 0.612031 | 1_1:+16347022 | Msa0010820:CDS |
| GCTCCAGAGAACAATGAGGA+TGG | 0.616407 | 1_1:+16346826 | Msa0010820:CDS |
| TCTGTCTGGCAGAGAGTTTG+GGG | 0.622516 | 1_1:-16346855 | None:intergenic |
| TCAGAAGTTGCACAAGCTAG+CGG | 0.624203 | 1_1:+16346694 | Msa0010820:CDS |
| TTCAAGTCTCCAGTATGGAA+AGG | 0.627917 | 1_1:+16348850 | Msa0010820:CDS |
| CAACTACACACACCTGACCC+AGG | 0.632411 | 1_1:+16346167 | Msa0010820:five_prime_UTR |
| GGACTGATTTGCTTCTGCAG+TGG | 0.634288 | 1_1:+16349178 | Msa0010820:exon |
| GGATAGGGACGAGAAACGTA+GGG | 0.635157 | 1_1:+16349007 | Msa0010820:CDS |
| GGGGTGTTTCGAAGCAGAAG+TGG | 0.643438 | 1_1:+16347067 | Msa0010820:CDS |
| ACTGGAGACTTGAAGCATCA+CGG | 0.643816 | 1_1:-16348841 | None:intergenic |
| TCATTTGCATCTAGGTACCA+AGG | 0.644622 | 1_1:-16349430 | None:intergenic |
| ATATATGCTTGACACACAAG+AGG | 0.658090 | 1_1:+16347155 | Msa0010820:CDS |
| AAAGCGAACCAAGAACATTG+AGG | 0.660498 | 1_1:+16348769 | Msa0010820:CDS |
| AAATGGACTGGATATGACAA+AGG | 0.684378 | 1_1:+16347131 | Msa0010820:CDS |
| AATCGAATTTGAAGACGCTG+AGG | 0.700545 | 1_1:+16346089 | Msa0010820:five_prime_UTR |
| TAATGAAAAGAAGAGGATGG+AGG | 0.705005 | 1_1:+16347029 | Msa0010820:CDS |
| ATGAGTTGTCTCCTGATGAG+GGG | 0.712862 | 1_1:+16346746 | Msa0010820:CDS |
| GAGGCTCCAACAGAGTCTAG+GGG | 0.720122 | 1_1:+16347048 | Msa0010820:CDS |
| GCCTGCTCCAGAGAACAATG+AGG | 0.734012 | 1_1:+16346822 | Msa0010820:CDS |
| TATGCACATATGGAGCATTG+TGG | 0.763355 | 1_1:+16349308 | Msa0010820:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATTTATTATTTAT+TGG | + | chr1_1:16346936-16346955 | Msa0010820:intron | 0.0% |
| !! | TTAATATTTGACAATTTAAA+AGG | + | chr1_1:16345992-16346011 | Msa0010820:five_prime_UTR | 10.0% |
| !! | TTATAATTTCAAAAATTCAA+AGG | - | chr1_1:16346244-16346263 | None:intergenic | 10.0% |
| !! | CAATATATTACAAAAAATTA+TGG | + | chr1_1:16346445-16346464 | Msa0010820:intron | 10.0% |
| !!! | TATCTATTTTAAGATAAATT+GGG | - | chr1_1:16347561-16347580 | None:intergenic | 10.0% |
| !! | ATAATTCTATAAATAATCAT+GGG | - | chr1_1:16348046-16348065 | None:intergenic | 10.0% |
| !!! | TTAAATATATGTTTTTTTGT+TGG | + | chr1_1:16348231-16348250 | Msa0010820:intron | 10.0% |
| !! | AAAAAATTAAAATAAGATAC+AGG | - | chr1_1:16348306-16348325 | None:intergenic | 10.0% |
| !!! | TTTTTGTAATATATTGTATG+TGG | - | chr1_1:16346441-16346460 | None:intergenic | 15.0% |
| !!! | AGCAATAAAAATAACATTTT+TGG | - | chr1_1:16347259-16347278 | None:intergenic | 15.0% |
| !!! | AAAAATGTTATTTTTATTGC+TGG | + | chr1_1:16347258-16347277 | Msa0010820:intron | 15.0% |
| !! | TAGTGTCATATTAAAATTTA+GGG | + | chr1_1:16347467-16347486 | Msa0010820:intron | 15.0% |
| !!! | ATCTATTTTAAGATAAATTG+GGG | - | chr1_1:16347560-16347579 | None:intergenic | 15.0% |
| !!! | CTATCTATTTTAAGATAAAT+TGG | - | chr1_1:16347562-16347581 | None:intergenic | 15.0% |
| !! | TAATTCTATAAATAATCATG+GGG | - | chr1_1:16348045-16348064 | None:intergenic | 15.0% |
| !! | GATAATTCTATAAATAATCA+TGG | - | chr1_1:16348047-16348066 | None:intergenic | 15.0% |
| !!! | AATCATTTACTAACTTTTTA+CGG | + | chr1_1:16348338-16348357 | Msa0010820:intron | 15.0% |
| !!! | TCTTTGGTTAATAAATTTTA+GGG | - | chr1_1:16348469-16348488 | None:intergenic | 15.0% |
| !!! | ATCTTTGGTTAATAAATTTT+AGG | - | chr1_1:16348470-16348489 | None:intergenic | 15.0% |
| !! | TTTGACAATTTAAAAGGATT+AGG | + | chr1_1:16345998-16346017 | Msa0010820:five_prime_UTR | 20.0% |
| !! | AAAACGTAATCAAATTGAAA+TGG | + | chr1_1:16347005-16347024 | Msa0010820:CDS | 20.0% |
| !! | GTAGTGTCATATTAAAATTT+AGG | + | chr1_1:16347466-16347485 | Msa0010820:intron | 20.0% |
| !! | AGTGTCATATTAAAATTTAG+GGG | + | chr1_1:16347468-16347487 | Msa0010820:intron | 20.0% |
| !!! | TCTATTTTAAGATAAATTGG+GGG | - | chr1_1:16347559-16347578 | None:intergenic | 20.0% |
| !!! | AAAAATGCTTTTAGCTTTAA+CGG | - | chr1_1:16347618-16347637 | None:intergenic | 20.0% |
| !! | TAATTTACTCCAATAATTTG+TGG | + | chr1_1:16347988-16348007 | Msa0010820:intron | 20.0% |
| !!! | AATTTACTCCAATAATTTGT+GGG | + | chr1_1:16347989-16348008 | Msa0010820:intron | 20.0% |
| !! | AAAAATATCCCACAAATTAT+TGG | - | chr1_1:16348000-16348019 | None:intergenic | 20.0% |
| !!! | GAACAAATTGATTTATTCTT+GGG | - | chr1_1:16348118-16348137 | None:intergenic | 20.0% |
| !!! | AGAACAAATTGATTTATTCT+TGG | - | chr1_1:16348119-16348138 | None:intergenic | 20.0% |
| !! | ATATATTAACATAAACCTCA+GGG | + | chr1_1:16348426-16348445 | Msa0010820:intron | 20.0% |
| !!! | TTTTACCAGTTTTTAATCAA+AGG | + | chr1_1:16348726-16348745 | Msa0010820:intron | 20.0% |
| !! | CGATTCAAATAAAAATATAC+AGG | + | chr1_1:16349466-16349485 | Msa0010820:three_prime_UTR | 20.0% |
| !!! | AAACAGGTTTTAGGTAATAT+AGG | - | chr1_1:16346037-16346056 | None:intergenic | 25.0% |
| ! | ATATTACCTAAAACCTGTTT+AGG | + | chr1_1:16346037-16346056 | Msa0010820:five_prime_UTR | 25.0% |
| ! | TATTACCTAAAACCTGTTTA+GGG | + | chr1_1:16346038-16346057 | Msa0010820:five_prime_UTR | 25.0% |
| ! | AAGATATTTAATCCCTAAAC+AGG | - | chr1_1:16346053-16346072 | None:intergenic | 25.0% |
| ! | ATATAACGCAATACATAGAT+TGG | - | chr1_1:16346221-16346240 | None:intergenic | 25.0% |
| ! | ATGAATGGTAGAAAGAAATA+TGG | + | chr1_1:16346546-16346565 | Msa0010820:intron | 25.0% |
| ! | AGAAGAGAAATACAAGAAAT+GGG | + | chr1_1:16347182-16347201 | Msa0010820:CDS | 25.0% |
| !! | TTTGTAGAGTTGATTGAAAA+TGG | + | chr1_1:16347853-16347872 | Msa0010820:intron | 25.0% |
| !!! | GTTTTCTAGAAATTGATTGA+GGG | - | chr1_1:16347892-16347911 | None:intergenic | 25.0% |
| !!! | TGTTTTCTAGAAATTGATTG+AGG | - | chr1_1:16347893-16347912 | None:intergenic | 25.0% |
| ! | ATGAACTTGAAACAAAAACA+AGG | + | chr1_1:16347926-16347945 | Msa0010820:intron | 25.0% |
| ! | TGAACTTGAAACAAAAACAA+GGG | + | chr1_1:16347927-16347946 | Msa0010820:intron | 25.0% |
| !! | TTTACCAGTATGTGTTTTAT+TGG | - | chr1_1:16348095-16348114 | None:intergenic | 25.0% |
| ! | TTGTTAAGTGAACAAATAGA+GGG | + | chr1_1:16348395-16348414 | Msa0010820:intron | 25.0% |
| ! | GATATATTAACATAAACCTC+AGG | + | chr1_1:16348425-16348444 | Msa0010820:intron | 25.0% |
| ! | TATATTAACATAAACCTCAG+GGG | + | chr1_1:16348427-16348446 | Msa0010820:intron | 25.0% |
| ! | GTATAAGACATTGTAATCTT+TGG | - | chr1_1:16348485-16348504 | None:intergenic | 25.0% |
| ! | GATTACAATGTCTTATACTT+AGG | + | chr1_1:16348487-16348506 | Msa0010820:intron | 25.0% |
| ! | GAATAACACCATGAAATATT+CGG | + | chr1_1:16348588-16348607 | Msa0010820:intron | 25.0% |
| ! | AATGTCCTTTGATTAAAAAC+TGG | - | chr1_1:16348734-16348753 | None:intergenic | 25.0% |
| ! | AATTGTCTTTCCTTCATTAT+AGG | + | chr1_1:16348935-16348954 | Msa0010820:intron | 25.0% |
| ! | ATTTCAACAAGAAGATTGAA+CGG | + | chr1_1:16349096-16349115 | Msa0010820:CDS | 25.0% |
| !!! | TATATTTTGCTATGCACATA+TGG | + | chr1_1:16349298-16349317 | Msa0010820:three_prime_UTR | 25.0% |
| ! | TTAATCCCTAAACAGGTTTT+AGG | - | chr1_1:16346046-16346065 | None:intergenic | 30.0% |
| ! | AATTCCGAATTCTGAGAAAT+CGG | + | chr1_1:16346136-16346155 | Msa0010820:five_prime_UTR | 30.0% |
| TAATCAGTACATTCGTGAAA+AGG | - | chr1_1:16346357-16346376 | None:intergenic | 30.0% | |
| GTTATAGTAGATGCTATGAA+TGG | + | chr1_1:16346531-16346550 | Msa0010820:intron | 30.0% | |
| TTGATCCACTTATTGTGATA+AGG | + | chr1_1:16346595-16346614 | Msa0010820:intron | 30.0% | |
| ! | TCACTATCAGAATTTTCATC+AGG | - | chr1_1:16346793-16346812 | None:intergenic | 30.0% |
| AAATGGCTAATGAAAAGAAG+AGG | + | chr1_1:16347022-16347041 | Msa0010820:CDS | 30.0% | |
| CAGAAGAGAAATACAAGAAA+TGG | + | chr1_1:16347181-16347200 | Msa0010820:CDS | 30.0% | |
| TTGTATATCTCTGTGTATAC+AGG | - | chr1_1:16347308-16347327 | None:intergenic | 30.0% | |
| !! | TGTCATTTAAAAGTACCTCA+GGG | - | chr1_1:16347510-16347529 | None:intergenic | 30.0% |
| !!! | ATTTTAAGATAAATTGGGGG+AGG | - | chr1_1:16347556-16347575 | None:intergenic | 30.0% |
| TAAAACACAAATTGTCGTCA+TGG | - | chr1_1:16347646-16347665 | None:intergenic | 30.0% | |
| !!! | CAATTTGTGTTTTAGAGTGT+CGG | + | chr1_1:16347652-16347671 | Msa0010820:intron | 30.0% |
| CGTAAGATCATTTGATTCAA+TGG | + | chr1_1:16347689-16347708 | Msa0010820:intron | 30.0% | |
| ! | GTGAAGATGCAAATTGATTT+GGG | - | chr1_1:16347727-16347746 | None:intergenic | 30.0% |
| AGTGAAGATGCAAATTGATT+TGG | - | chr1_1:16347728-16347747 | None:intergenic | 30.0% | |
| GAAATATAAATTGTGATCCC+TGG | + | chr1_1:16348160-16348179 | Msa0010820:intron | 30.0% | |
| ATTATTAGCCCAACAAATCA+TGG | - | chr1_1:16348211-16348230 | None:intergenic | 30.0% | |
| GTTGTTAAGTGAACAAATAG+AGG | + | chr1_1:16348394-16348413 | Msa0010820:intron | 30.0% | |
| TGTTAAGTGAACAAATAGAG+GGG | + | chr1_1:16348396-16348415 | Msa0010820:intron | 30.0% | |
| !! | GTTGATGAAGAAGTGTTTAT+AGG | + | chr1_1:16348563-16348582 | Msa0010820:intron | 30.0% |
| TCTTGTTGAAATGCTCATTA+CGG | - | chr1_1:16349088-16349107 | None:intergenic | 30.0% | |
| TTTCAACAAGAAGATTGAAC+GGG | + | chr1_1:16349097-16349116 | Msa0010820:CDS | 30.0% | |
| ATTAAAAATAATCTCGAGCG+AGG | + | chr1_1:16349143-16349162 | Msa0010820:CDS | 30.0% | |
| ! | TCTCATTGTTATTCTAATGC+TGG | + | chr1_1:16349213-16349232 | Msa0010820:three_prime_UTR | 30.0% |
| ! | CTCATTGTTATTCTAATGCT+GGG | + | chr1_1:16349214-16349233 | Msa0010820:three_prime_UTR | 30.0% |
| TCAGAATTCGGAATTCGATT+CGG | - | chr1_1:16346131-16346150 | None:intergenic | 35.0% | |
| ACATTCGTGAAAAGGATTAC+TGG | - | chr1_1:16346349-16346368 | None:intergenic | 35.0% | |
| ! | TCAGAATTTTCATCAGGCTT+TGG | - | chr1_1:16346787-16346806 | None:intergenic | 35.0% |
| GCTAAAATGGTATTCAACGA+TGG | + | chr1_1:16346898-16346917 | Msa0010820:intron | 35.0% | |
| !!! | TTTTTTGCTTCTTGCTGACA+GGG | - | chr1_1:16346988-16347007 | None:intergenic | 35.0% |
| !!! | TTTTTTTGCTTCTTGCTGAC+AGG | - | chr1_1:16346989-16347008 | None:intergenic | 35.0% |
| TAATGAAAAGAAGAGGATGG+AGG | + | chr1_1:16347029-16347048 | Msa0010820:CDS | 35.0% | |
| GACGATAGGAAGAAAAAGAT+TGG | + | chr1_1:16347093-16347112 | Msa0010820:CDS | 35.0% | |
| GGAAAACTTCTTGATGCAAA+TGG | + | chr1_1:16347114-16347133 | Msa0010820:CDS | 35.0% | |
| !! | AAATGGACTGGATATGACAA+AGG | + | chr1_1:16347131-16347150 | Msa0010820:CDS | 35.0% |
| ATATATGCTTGACACACAAG+AGG | + | chr1_1:16347155-16347174 | Msa0010820:CDS | 35.0% | |
| GAAATACAAGAAATGGGAGA+AGG | + | chr1_1:16347188-16347207 | Msa0010820:CDS | 35.0% | |
| TTTGTGAACCACATTGAAGT+TGG | - | chr1_1:16347356-16347375 | None:intergenic | 35.0% | |
| ACTTGTAGAGTTTGTAAGCT+TGG | + | chr1_1:16347396-16347415 | Msa0010820:intron | 35.0% | |
| !! | GTCATTTAAAAGTACCTCAG+GGG | - | chr1_1:16347509-16347528 | None:intergenic | 35.0% |
| !! | GTGTCATTTAAAAGTACCTC+AGG | - | chr1_1:16347511-16347530 | None:intergenic | 35.0% |
| ! | ATCACGGTGTTAAGTTGTAA+GGG | - | chr1_1:16347591-16347610 | None:intergenic | 35.0% |
| ! | AATCACGGTGTTAAGTTGTA+AGG | - | chr1_1:16347592-16347611 | None:intergenic | 35.0% |
| !! | TAGCTTTAACGGAACAATCA+CGG | - | chr1_1:16347607-16347626 | None:intergenic | 35.0% |
| !! | ATTGATTTGGGACTAGAGTT+CGG | - | chr1_1:16347715-16347734 | None:intergenic | 35.0% |
| GGGTTTACAGTTTATCAGTA+AGG | + | chr1_1:16347947-16347966 | Msa0010820:intron | 35.0% | |
| CAAAGTTTCTCACAATTGGA+TGG | - | chr1_1:16348069-16348088 | None:intergenic | 35.0% | |
| CATCCAATTGTGAGAAACTT+TGG | + | chr1_1:16348067-16348086 | Msa0010820:intron | 35.0% | |
| GATCCAAAGTTTCTCACAAT+TGG | - | chr1_1:16348073-16348092 | None:intergenic | 35.0% | |
| GGATCCAATAAAACACATAC+TGG | + | chr1_1:16348088-16348107 | Msa0010820:intron | 35.0% | |
| TAGATGTGAGTTTAACAGCA+AGG | + | chr1_1:16348365-16348384 | Msa0010820:intron | 35.0% | |
| GTATTCATGCAAACACATGT+AGG | - | chr1_1:16348520-16348539 | None:intergenic | 35.0% | |
| CATGTGTTTGCATGAATACT+TGG | + | chr1_1:16348521-16348540 | Msa0010820:intron | 35.0% | |
| GATCTAGACCGAATATTTCA+TGG | - | chr1_1:16348599-16348618 | None:intergenic | 35.0% | |
| ! | TGTGCCTTTAGAAGTTCTTA+CGG | + | chr1_1:16348679-16348698 | Msa0010820:intron | 35.0% |
| AGTTCCGTAAGAACTTCTAA+AGG | - | chr1_1:16348686-16348705 | None:intergenic | 35.0% | |
| TTTGTACTTCTGCACATCAA+TGG | + | chr1_1:16348898-16348917 | Msa0010820:intron | 35.0% | |
| TTGTACTTCTGCACATCAAT+GGG | + | chr1_1:16348899-16348918 | Msa0010820:intron | 35.0% | |
| !! | CATCAATGGGTTATTGTATG+AGG | + | chr1_1:16348912-16348931 | Msa0010820:intron | 35.0% |
| !!! | GTTTTTGGTGCCTATAATGA+AGG | - | chr1_1:16348948-16348967 | None:intergenic | 35.0% |
| !!! | ATCTTATCCTCTGAGGTTTT+TGG | - | chr1_1:16348963-16348982 | None:intergenic | 35.0% |
| TGGTACAAGAACTTAAGGAT+AGG | + | chr1_1:16348991-16349010 | Msa0010820:CDS | 35.0% | |
| GGTACAAGAACTTAAGGATA+GGG | + | chr1_1:16348992-16349011 | Msa0010820:CDS | 35.0% | |
| CTCCAATGTGTATTTACCAA+AGG | - | chr1_1:16349123-16349142 | None:intergenic | 35.0% | |
| CTAATGCTGGGAAGTTTAAA+TGG | + | chr1_1:16349226-16349245 | Msa0010820:three_prime_UTR | 35.0% | |
| ! | TTGAGTTTGAAGCATTTCCT+TGG | + | chr1_1:16349413-16349432 | Msa0010820:three_prime_UTR | 35.0% |
| GATTCAAGTCATTTGCATCT+AGG | - | chr1_1:16349441-16349460 | None:intergenic | 35.0% | |
| AATCGAATTTGAAGACGCTG+AGG | + | chr1_1:16346089-16346108 | Msa0010820:five_prime_UTR | 40.0% | |
| !! | AGCACCGATTTCTCAGAATT+CGG | - | chr1_1:16346143-16346162 | None:intergenic | 40.0% |
| AGATACGATTGAACGAACCT+GGG | - | chr1_1:16346187-16346206 | None:intergenic | 40.0% | |
| AAGATACGATTGAACGAACC+TGG | - | chr1_1:16346188-16346207 | None:intergenic | 40.0% | |
| CTAACCAGATTGAGTGAGTT+TGG | - | chr1_1:16346403-16346422 | None:intergenic | 40.0% | |
| TTATGGCAACTAGACTTGAG+CGG | + | chr1_1:16346462-16346481 | Msa0010820:intron | 40.0% | |
| ! | CCAAGCCTTATCACAATAAG+TGG | - | chr1_1:16346603-16346622 | None:intergenic | 40.0% |
| CCACTTATTGTGATAAGGCT+TGG | + | chr1_1:16346600-16346619 | Msa0010820:intron | 40.0% | |
| GATGGAGTTGAGAGCTAAAA+TGG | + | chr1_1:16346885-16346904 | Msa0010820:CDS | 40.0% | |
| GGCTAATGAAAAGAAGAGGA+TGG | + | chr1_1:16347026-16347045 | Msa0010820:CDS | 40.0% | |
| ACTTCTTGATGCAAATGGAC+TGG | + | chr1_1:16347119-16347138 | Msa0010820:CDS | 40.0% | |
| TTTCTGTGCCAACTTCAATG+TGG | + | chr1_1:16347345-16347364 | Msa0010820:intron | 40.0% | |
| GTACTCGATATCACAAACTC+TGG | - | chr1_1:16347429-16347448 | None:intergenic | 40.0% | |
| ! | GGGAGGTTTAAAACTAGAAG+GGG | - | chr1_1:16347539-16347558 | None:intergenic | 40.0% |
| ! | GGGGAGGTTTAAAACTAGAA+GGG | - | chr1_1:16347540-16347559 | None:intergenic | 40.0% |
| ! | TCACGGTGTTAAGTTGTAAG+GGG | - | chr1_1:16347590-16347609 | None:intergenic | 40.0% |
| AAAGAAGAGCCACCAGAAAA+GGG | - | chr1_1:16347779-16347798 | None:intergenic | 40.0% | |
| AAAAGAAGAGCCACCAGAAA+AGG | - | chr1_1:16347780-16347799 | None:intergenic | 40.0% | |
| TAAGTGAACAAATAGAGGGG+AGG | + | chr1_1:16348399-16348418 | Msa0010820:intron | 40.0% | |
| ATTAACATAAACCTCAGGGG+AGG | + | chr1_1:16348430-16348449 | Msa0010820:intron | 40.0% | |
| AAAGCGAACCAAGAACATTG+AGG | + | chr1_1:16348769-16348788 | Msa0010820:CDS | 40.0% | |
| TACATCGACCTCAATGTTCT+TGG | - | chr1_1:16348780-16348799 | None:intergenic | 40.0% | |
| TTCAAGTCTCCAGTATGGAA+AGG | + | chr1_1:16348850-16348869 | Msa0010820:CDS | 40.0% | |
| GACAGTATACCTTTCCATAC+TGG | - | chr1_1:16348862-16348881 | None:intergenic | 40.0% | |
| AGAGGATAAGATTGACAGGA+TGG | + | chr1_1:16348971-16348990 | Msa0010820:CDS | 40.0% | |
| CAGGATGGTACAAGAACTTA+AGG | + | chr1_1:16348986-16349005 | Msa0010820:CDS | 40.0% | |
| GGCCTTTGGTAAATACACAT+TGG | + | chr1_1:16349118-16349137 | Msa0010820:CDS | 40.0% | |
| ATGCTGGGAAGTTTAAATGG+TGG | + | chr1_1:16349229-16349248 | Msa0010820:three_prime_UTR | 40.0% | |
| !! | TATGCACATATGGAGCATTG+TGG | + | chr1_1:16349308-16349327 | Msa0010820:three_prime_UTR | 40.0% |
| TCATTTGCATCTAGGTACCA+AGG | - | chr1_1:16349433-16349452 | None:intergenic | 40.0% | |
| GAAAAGGATTACTGGCGTTC+CGG | - | chr1_1:16346341-16346360 | None:intergenic | 45.0% | |
| CAAGCCAAACTCACTCAATC+TGG | + | chr1_1:16346396-16346415 | Msa0010820:CDS | 45.0% | |
| TCAGAAGTTGCACAAGCTAG+CGG | + | chr1_1:16346694-16346713 | Msa0010820:CDS | 45.0% | |
| CATCAGGAGACAACTCATCT+GGG | - | chr1_1:16346744-16346763 | None:intergenic | 45.0% | |
| TCATCAGGAGACAACTCATC+TGG | - | chr1_1:16346745-16346764 | None:intergenic | 45.0% | |
| AGATGAGTTGTCTCCTGATG+AGG | + | chr1_1:16346744-16346763 | Msa0010820:CDS | 45.0% | |
| GATGAGTTGTCTCCTGATGA+GGG | + | chr1_1:16346745-16346764 | Msa0010820:CDS | 45.0% | |
| ATGAGTTGTCTCCTGATGAG+GGG | + | chr1_1:16346746-16346765 | Msa0010820:CDS | 45.0% | |
| TTCTGTCTGGCAGAGAGTTT+GGG | - | chr1_1:16346859-16346878 | None:intergenic | 45.0% | |
| TTTCTGTCTGGCAGAGAGTT+TGG | - | chr1_1:16346860-16346879 | None:intergenic | 45.0% | |
| TCTCTGCCAGACAGAAAAAG+TGG | + | chr1_1:16346863-16346882 | Msa0010820:CDS | 45.0% | |
| TGCCAGACAGAAAAAGTGGA+TGG | + | chr1_1:16346867-16346886 | Msa0010820:CDS | 45.0% | |
| !!! | CTCCATCCACTTTTTCTGTC+TGG | - | chr1_1:16346872-16346891 | None:intergenic | 45.0% |
| !! | AATTACACTGACTTCCCCTG+AGG | + | chr1_1:16347492-16347511 | Msa0010820:intron | 45.0% |
| ! | GGGGGAGGTTTAAAACTAGA+AGG | - | chr1_1:16347541-16347560 | None:intergenic | 45.0% |
| !!! | TGTGTTTTAGAGTGTCGGTG+TGG | + | chr1_1:16347657-16347676 | Msa0010820:intron | 45.0% |
| !! | TTAGAGTGTCGGTGTGGATT+TGG | + | chr1_1:16347663-16347682 | Msa0010820:intron | 45.0% |
| AAGAAGAGCCACCAGAAAAG+GGG | - | chr1_1:16347778-16347797 | None:intergenic | 45.0% | |
| AAATCATGGACGCATGGAAG+AGG | - | chr1_1:16348197-16348216 | None:intergenic | 45.0% | |
| ! | TCCATGCGTCCATGATTTGT+TGG | + | chr1_1:16348199-16348218 | Msa0010820:intron | 45.0% |
| !! | CCATGCGTCCATGATTTGTT+GGG | + | chr1_1:16348200-16348219 | Msa0010820:intron | 45.0% |
| ATTTACACTAACCTCCCCTG+AGG | - | chr1_1:16348444-16348463 | None:intergenic | 45.0% | |
| ! | GAAGCATCACGGTAGAATTC+TGG | - | chr1_1:16348833-16348852 | None:intergenic | 45.0% |
| ! | ACTGGAGACTTGAAGCATCA+CGG | - | chr1_1:16348844-16348863 | None:intergenic | 45.0% |
| GATGCTTCAAGTCTCCAGTA+TGG | + | chr1_1:16348845-16348864 | Msa0010820:CDS | 45.0% | |
| ATAGGCACCAAAAACCTCAG+AGG | + | chr1_1:16348953-16348972 | Msa0010820:intron | 45.0% | |
| CCTGTCAATCTTATCCTCTG+AGG | - | chr1_1:16348970-16348989 | None:intergenic | 45.0% | |
| CCTCAGAGGATAAGATTGAC+AGG | + | chr1_1:16348967-16348986 | Msa0010820:CDS | 45.0% | |
| ! | AGAAACGTAGGGCATTTAGC+AGG | + | chr1_1:16349018-16349037 | Msa0010820:CDS | 45.0% |
| AAGAAGATTGAACGGGCCTT+TGG | + | chr1_1:16349104-16349123 | Msa0010820:CDS | 45.0% | |
| ACTGCAGAAGCAAATCAGTC+CGG | - | chr1_1:16349179-16349198 | None:intergenic | 45.0% | |
| !! | AAATGGTGGATTGCGTTCTC+TGG | + | chr1_1:16349243-16349262 | Msa0010820:three_prime_UTR | 45.0% |
| !!! | AATTTTTGAAATTATAAATT+AGG | + | chr1_1:16346247-16346266 | Msa0010820:intron | 5.0% |
| !!! | ATTTTTGAAATTATAAATTA+GGG | + | chr1_1:16346248-16346267 | Msa0010820:intron | 5.0% |
| ATTACTGGCGTTCCGGCAAT+CGG | - | chr1_1:16346334-16346353 | None:intergenic | 50.0% | |
| GCAACTAGACTTGAGCGGTT+TGG | + | chr1_1:16346467-16346486 | Msa0010820:intron | 50.0% | |
| AGGAGACAACTCATCTGGGA+TGG | - | chr1_1:16346740-16346759 | None:intergenic | 50.0% | |
| TCATCATGCATCCCCTCATC+AGG | - | chr1_1:16346760-16346779 | None:intergenic | 50.0% | |
| GATGAGGGGATGCATGATGA+TGG | + | chr1_1:16346760-16346779 | Msa0010820:CDS | 50.0% | |
| !! | TCCTCATTGTTCTCTGGAGC+AGG | - | chr1_1:16346826-16346845 | None:intergenic | 50.0% |
| GCTCCAGAGAACAATGAGGA+TGG | + | chr1_1:16346826-16346845 | Msa0010820:CDS | 50.0% | |
| GAGCCATCCTCATTGTTCTC+TGG | - | chr1_1:16346832-16346851 | None:intergenic | 50.0% | |
| TCTGTCTGGCAGAGAGTTTG+GGG | - | chr1_1:16346858-16346877 | None:intergenic | 50.0% | |
| GCTGACAGGGAAACAAAGCA+AGG | - | chr1_1:16346975-16346994 | None:intergenic | 50.0% | |
| GAAACACCCCTAGACTCTGT+TGG | - | chr1_1:16347057-16347076 | None:intergenic | 50.0% | |
| AGCAGAAGTGGCTTGACGAT+AGG | + | chr1_1:16347079-16347098 | Msa0010820:CDS | 50.0% | |
| GAGAAGGATCCTGCTCCATT+CGG | + | chr1_1:16347204-16347223 | Msa0010820:CDS | 50.0% | |
| AACATACCATCCCAGCCGAA+TGG | - | chr1_1:16347222-16347241 | None:intergenic | 50.0% | |
| TCACTCTCCCACTCTATCTC+TGG | + | chr1_1:16347743-16347762 | Msa0010820:intron | 50.0% | |
| !! | TGTGATCCCTGGACTTGTTG+TGG | + | chr1_1:16348171-16348190 | Msa0010820:intron | 50.0% |
| AAGAGGCCACAACAAGTCCA+GGG | - | chr1_1:16348180-16348199 | None:intergenic | 50.0% | |
| CCCAACAAATCATGGACGCA+TGG | - | chr1_1:16348203-16348222 | None:intergenic | 50.0% | |
| AGGATAGGGACGAGAAACGT+AGG | + | chr1_1:16349006-16349025 | Msa0010820:CDS | 50.0% | |
| GGATAGGGACGAGAAACGTA+GGG | + | chr1_1:16349007-16349026 | Msa0010820:CDS | 50.0% | |
| !! | GGACTGATTTGCTTCTGCAG+TGG | + | chr1_1:16349178-16349197 | Msa0010820:exon | 50.0% |
| CAACTACACACACCTGACCC+AGG | + | chr1_1:16346167-16346186 | Msa0010820:five_prime_UTR | 55.0% | |
| CGATTGAACGAACCTGGGTC+AGG | - | chr1_1:16346182-16346201 | None:intergenic | 55.0% | |
| GGCAATCGGGATGCACATCT+CGG | - | chr1_1:16346320-16346339 | None:intergenic | 55.0% | |
| GAGATGTGCATCCCGATTGC+CGG | + | chr1_1:16346319-16346338 | Msa0010820:CDS | 55.0% | |
| TTACTGGCGTTCCGGCAATC+GGG | - | chr1_1:16346333-16346352 | None:intergenic | 55.0% | |
| !! | CATCTGGGATGGCTTGCTCA+TGG | - | chr1_1:16346729-16346748 | None:intergenic | 55.0% |
| !! | TTCTCTGGAGCAGGCTGATC+AGG | - | chr1_1:16346817-16346836 | None:intergenic | 55.0% |
| GCCTGCTCCAGAGAACAATG+AGG | + | chr1_1:16346822-16346841 | Msa0010820:CDS | 55.0% | |
| TGGAGGCTCCAACAGAGTCT+AGG | + | chr1_1:16347046-16347065 | Msa0010820:CDS | 55.0% | |
| GGAGGCTCCAACAGAGTCTA+GGG | + | chr1_1:16347047-16347066 | Msa0010820:CDS | 55.0% | |
| GAGGCTCCAACAGAGTCTAG+GGG | + | chr1_1:16347048-16347067 | Msa0010820:CDS | 55.0% | |
| ! | GGGGTGTTTCGAAGCAGAAG+TGG | + | chr1_1:16347067-16347086 | Msa0010820:CDS | 55.0% |
| GAAGAGGCCACAACAAGTCC+AGG | - | chr1_1:16348181-16348200 | None:intergenic | 55.0% | |
| AGGATCCTGCTCCATTCGGC+TGG | + | chr1_1:16347208-16347227 | Msa0010820:CDS | 60.0% | |
| GGATCCTGCTCCATTCGGCT+GGG | + | chr1_1:16347209-16347228 | Msa0010820:CDS | 60.0% | |
| TCCCACTCTATCTCTGGCGC+CGG | + | chr1_1:16347749-16347768 | Msa0010820:intron | 60.0% | |
| GCCACCAGAAAAGGGGTTGC+CGG | - | chr1_1:16347771-16347790 | None:intergenic | 60.0% | |
| CGAGCGAGGAACTGCATTGC+CGG | + | chr1_1:16349157-16349176 | Msa0010820:CDS | 60.0% | |
| CCATCCCAGCCGAATGGAGC+AGG | - | chr1_1:16347216-16347235 | None:intergenic | 65.0% | |
| CCTGCTCCATTCGGCTGGGA+TGG | + | chr1_1:16347213-16347232 | Msa0010820:CDS | 65.0% | |
| GCCGGCGCCAGAGATAGAGT+GGG | - | chr1_1:16347753-16347772 | None:intergenic | 65.0% | |
| TGCCGGCGCCAGAGATAGAG+TGG | - | chr1_1:16347754-16347773 | None:intergenic | 65.0% | |
| ! | GCCGGCAACCCCTTTTCTGG+TGG | + | chr1_1:16347767-16347786 | Msa0010820:intron | 65.0% |
| !!! | GGCGCCGGCAACCCCTTTTC+TGG | + | chr1_1:16347764-16347783 | Msa0010820:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 16345975 | 16349521 | 16345975 | ID=Msa0010820;Name=Msa0010820 |
| chr1_1 | mRNA | 16345975 | 16349521 | 16345975 | ID=Msa0010820-mRNA-1;Parent=Msa0010820;Name=Msa0010820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=224|1|1|1|0.8|0.66|6|337|310 |
| chr1_1 | exon | 16345975 | 16346188 | 16345975 | ID=Msa0010820-mRNA-1:exon:5954;Parent=Msa0010820-mRNA-1 |
| chr1_1 | exon | 16346296 | 16346417 | 16346296 | ID=Msa0010820-mRNA-1:exon:5955;Parent=Msa0010820-mRNA-1 |
| chr1_1 | exon | 16346692 | 16346906 | 16346692 | ID=Msa0010820-mRNA-1:exon:5956;Parent=Msa0010820-mRNA-1 |
| chr1_1 | exon | 16346994 | 16347234 | 16346994 | ID=Msa0010820-mRNA-1:exon:5957;Parent=Msa0010820-mRNA-1 |
| chr1_1 | exon | 16348735 | 16348871 | 16348735 | ID=Msa0010820-mRNA-1:exon:5958;Parent=Msa0010820-mRNA-1 |
| chr1_1 | exon | 16348957 | 16349521 | 16348957 | ID=Msa0010820-mRNA-1:exon:5959;Parent=Msa0010820-mRNA-1 |
| chr1_1 | five_prime_UTR | 16345975 | 16346188 | 16345975 | ID=Msa0010820-mRNA-1:five_prime_utr;Parent=Msa0010820-mRNA-1 |
| chr1_1 | five_prime_UTR | 16346296 | 16346305 | 16346296 | ID=Msa0010820-mRNA-1:five_prime_utr;Parent=Msa0010820-mRNA-1 |
| chr1_1 | CDS | 16346306 | 16346417 | 16346306 | ID=Msa0010820-mRNA-1:cds;Parent=Msa0010820-mRNA-1 |
| chr1_1 | CDS | 16346692 | 16346906 | 16346692 | ID=Msa0010820-mRNA-1:cds;Parent=Msa0010820-mRNA-1 |
| chr1_1 | CDS | 16346994 | 16347234 | 16346994 | ID=Msa0010820-mRNA-1:cds;Parent=Msa0010820-mRNA-1 |
| chr1_1 | CDS | 16348735 | 16348871 | 16348735 | ID=Msa0010820-mRNA-1:cds;Parent=Msa0010820-mRNA-1 |
| chr1_1 | CDS | 16348957 | 16349184 | 16348957 | ID=Msa0010820-mRNA-1:cds;Parent=Msa0010820-mRNA-1 |
| chr1_1 | three_prime_UTR | 16349185 | 16349521 | 16349185 | ID=Msa0010820-mRNA-1:three_prime_utr;Parent=Msa0010820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
