AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701030 MtrunA17_Chr8g0378941 96.307 352 12 1 1 351 1 352 0.0 696
Msa0701030 MtrunA17_Chr1g0212371 34.483 203 117 5 155 344 120 319 4.22e-30 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701030 AT4G28590.1 54.545 330 111 6 25 343 22 323 3.06e-117 343
Msa0701030 AT2G31840.1 41.436 181 89 5 173 339 152 329 9.92e-33 125
Msa0701030 AT2G31840.2 41.436 181 89 5 173 339 152 329 9.92e-33 125

Find 109 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTACTTACTATAAT+TGG 0.060495 4_4:-72279000 None:intergenic
GAGGACATTCTCGAACTTTC+AGG 0.153863 4_4:-72280886 None:intergenic
TCTCCTACAACATTCTTAAT+TGG 0.208516 4_4:-72279710 None:intergenic
GTTTCTATCATCCTTATTAA+TGG 0.262268 4_4:-72279336 None:intergenic
ATTAACTACTTACTATAATT+GGG 0.280895 4_4:-72278999 None:intergenic
AAGGGGAGACTGAGGATAAC+TGG 0.300402 4_4:+72279756 Msa0701030:CDS
CGACCGCGCCTTGGCTTCCT+TGG 0.304224 4_4:-72279386 None:intergenic
CTATCATCATTGCTGCGTTT+TGG 0.305949 4_4:-72279554 None:intergenic
TCAATTTCTATTCAACAAAA+TGG 0.319152 4_4:+72279091 Msa0701030:exon
AAGAATCTCGAATGAGAAAA+AGG 0.321782 4_4:-72279152 None:intergenic
GGTAAGGTAAGCATATTCTA+TGG 0.333317 4_4:-72278850 None:intergenic
TGTAGGATTAGGTTCGGGTT+CGG 0.333557 4_4:-72279258 None:intergenic
GTAGGATTAGGTTCGGGTTC+GGG 0.335867 4_4:-72279257 None:intergenic
GGCTTCCTTGGAATTGTTGT+TGG 0.353522 4_4:-72279374 None:intergenic
TGAATAGAAATTGAAAACTA+TGG 0.357982 4_4:-72279082 None:intergenic
GCAACAAAATGCGGGTGCTT+TGG 0.363915 4_4:+72279478 Msa0701030:CDS
TCCACAGGGCAAATGATAAC+TGG 0.371102 4_4:+72280498 Msa0701030:intron
TTTGGATGTAGGATTAGGTT+CGG 0.375242 4_4:-72279264 None:intergenic
AGAAACGAGCTAGGAGAAAG+AGG 0.387324 4_4:+72278877 Msa0701030:five_prime_UTR
ACAGAACATGATATTGATAT+AGG 0.402346 4_4:-72279212 None:intergenic
AGCTACAACAAGGTATATAT+TGG 0.405223 4_4:+72278931 Msa0701030:five_prime_UTR
CATCCAATTAAGAATGTTGT+AGG 0.407757 4_4:+72279707 Msa0701030:CDS
GGTGCAGGAGATCAATTGTT+TGG 0.409092 4_4:+72279778 Msa0701030:CDS
GGTCATTTCTATGTGTCAAT+TGG 0.415579 4_4:+72278799 Msa0701030:five_prime_UTR
AGAGCTGGAGAAAGCAATAA+AGG 0.432889 4_4:+72280532 Msa0701030:CDS
TGGAGAGAAGGCGGTGATTG+AGG 0.436030 4_4:+72279613 Msa0701030:CDS
TTGGAGGCATAAGAGCTGTT+TGG 0.439142 4_4:-72279121 None:intergenic
GCCTGCATGGATTGATGATA+AGG 0.442007 4_4:+72281155 Msa0701030:CDS
TAGAAATTGAAAACTATGGT+TGG 0.446812 4_4:-72279078 None:intergenic
GGAAGATGGTGGTGGAGAGA+AGG 0.455976 4_4:+72279601 Msa0701030:CDS
CCTCGTAGAAACAAAATTTG+AGG 0.457143 4_4:-72280905 None:intergenic
AGGACATTCTCGAACTTTCA+GGG 0.462386 4_4:-72280885 None:intergenic
ATGATGGTGCTGAAATTGAT+TGG 0.468138 4_4:+72279732 Msa0701030:CDS
AGAAAGCAATAAAGGTGTAC+TGG 0.471230 4_4:+72280540 Msa0701030:CDS
AAGATGGTGTACAGGGAGAA+AGG 0.474258 4_4:+72280932 Msa0701030:CDS
TGAGGAGGAGGTGGAAGAAG+AGG 0.474972 4_4:+72279580 Msa0701030:CDS
AGATGGTGTGACCATTAATA+AGG 0.476275 4_4:+72279325 Msa0701030:CDS
AGAACACGTTTGCTGCAATT+CGG 0.476704 4_4:+72279456 Msa0701030:CDS
AGAAATTGAAAACTATGGTT+GGG 0.477543 4_4:-72279077 None:intergenic
AGAGAGTGAGAGCTGGCCAT+TGG 0.480727 4_4:+72279637 Msa0701030:CDS
AATGTGATGAGTAGATAAAG+TGG 0.489173 4_4:-72279183 None:intergenic
TAACGGTAGTTAACTACCGC+TGG 0.489918 4_4:+72278767 Msa0701030:five_prime_UTR
CTAAAGATCGGTTACCTCCC+AGG 0.492013 4_4:+72280567 Msa0701030:CDS
TTGGATGTAGGATTAGGTTC+GGG 0.492104 4_4:-72279263 None:intergenic
GAGGGAATAAGATGGTGTAC+AGG 0.495962 4_4:+72280924 Msa0701030:CDS
CATTGGATACGGATGTCGGG+TGG 0.496433 4_4:+72279654 Msa0701030:CDS
ACTCAGAACTGCGGATGAGC+TGG 0.496745 4_4:+72281095 Msa0701030:CDS
GAAGAAGAGGAAGATGGTGG+TGG 0.502013 4_4:+72279593 Msa0701030:CDS
TGATGGTGCTGAAATTGATT+GGG 0.506693 4_4:+72279733 Msa0701030:CDS
GCAATTCGGCAACAAAATGC+GGG 0.507031 4_4:+72279470 Msa0701030:CDS
TGGCCATTGGATACGGATGT+CGG 0.507521 4_4:+72279650 Msa0701030:CDS
TGAGAGCTGGCCATTGGATA+CGG 0.507959 4_4:+72279643 Msa0701030:CDS
GGCCATTGGATACGGATGTC+GGG 0.512837 4_4:+72279651 Msa0701030:CDS
AAGAAGCTTCTGAGAAGAGA+AGG 0.518975 4_4:-72278956 None:intergenic
GACTGAGGATAACTGGGTGC+AGG 0.519180 4_4:+72279763 Msa0701030:CDS
TGATAGTGATGAGGAGGAGG+TGG 0.520072 4_4:+72279571 Msa0701030:CDS
GGAGATCAATTGTTTGGAGT+GGG 0.524391 4_4:+72279784 Msa0701030:CDS
TTAACTACTTACTATAATTG+GGG 0.524499 4_4:-72278998 None:intergenic
CATTAACATCGAGAAAGACT+TGG 0.524986 4_4:+72280856 Msa0701030:CDS
GAAACGAGCTAGGAGAAAGA+GGG 0.529344 4_4:+72278878 Msa0701030:five_prime_UTR
GTGCTGAAATTGATTGGGAA+GGG 0.532847 4_4:+72279738 Msa0701030:CDS
AACGGTAGTTAACTACCGCT+GGG 0.537674 4_4:+72278768 Msa0701030:five_prime_UTR
AAAAGTTTCCAACGTGGAGA+TGG 0.538979 4_4:+72279308 Msa0701030:CDS
AAGAATGTTGTAGGAGATGA+TGG 0.540394 4_4:+72279716 Msa0701030:CDS
TGCTGAAATTGATTGGGAAG+GGG 0.540914 4_4:+72279739 Msa0701030:CDS
CAACAATTCCAAGGAAGCCA+AGG 0.541191 4_4:+72279378 Msa0701030:CDS
GAGGTGGAAGAAGAGGAAGA+TGG 0.541968 4_4:+72279587 Msa0701030:CDS
AGATGGTGGTGGAGAGAAGG+CGG 0.543685 4_4:+72279604 Msa0701030:CDS
ATTGGATACGGATGTCGGGT+GGG 0.544540 4_4:+72279655 Msa0701030:CDS
TGCAATTCGGCAACAAAATG+CGG 0.545718 4_4:+72279469 Msa0701030:CDS
TTGGATACGGATGTCGGGTG+GGG 0.546849 4_4:+72279656 Msa0701030:CDS
TGATTGGGAAGGGGAGACTG+AGG 0.550882 4_4:+72279748 Msa0701030:CDS
GTGGAAGAAGAGGAAGATGG+TGG 0.551552 4_4:+72279590 Msa0701030:CDS
TTAATGTCACATGGTCCTTG+TGG 0.558893 4_4:+72281206 Msa0701030:three_prime_UTR
GCCTTATCATCAATCCATGC+AGG 0.566180 4_4:-72281156 None:intergenic
GTTTCTACGAGGGAATAAGA+TGG 0.569954 4_4:+72280916 Msa0701030:CDS
GAATCATAAAGATATAATGA+AGG 0.574940 4_4:+72279502 Msa0701030:CDS
TGATGATAGTGATGAGGAGG+AGG 0.575455 4_4:+72279568 Msa0701030:CDS
AATTTCCAACAACAATTCCA+AGG 0.578397 4_4:+72279369 Msa0701030:CDS
TTGAGGAAGAGAGTGAGAGC+TGG 0.578485 4_4:+72279630 Msa0701030:CDS
AGGGGAGACTGAGGATAACT+GGG 0.579701 4_4:+72279757 Msa0701030:CDS
AGGAGATCAATTGTTTGGAG+TGG 0.582911 4_4:+72279783 Msa0701030:CDS
CAATTAATAACGTAAATACA+AGG 0.583174 4_4:-72281178 None:intergenic
CACCCGACATCCGTATCCAA+TGG 0.587765 4_4:-72279653 None:intergenic
GGTGCTGAAATTGATTGGGA+AGG 0.593647 4_4:+72279737 Msa0701030:CDS
ACAATGCAAAGAAGCCTGCA+TGG 0.600174 4_4:+72281142 Msa0701030:CDS
TAAAGATCGGTTACCTCCCA+GGG 0.600728 4_4:+72280568 Msa0701030:CDS
CAATGATGATAGTGATGAGG+AGG 0.605683 4_4:+72279565 Msa0701030:CDS
GTACGATTAAAGGACTAGGA+TGG 0.608020 4_4:-72279820 None:intergenic
GATATAATGAAGGACAGTGT+CGG 0.611630 4_4:+72279512 Msa0701030:CDS
TGTACTGGAGTGCTAAAGAT+CGG 0.614574 4_4:+72280555 Msa0701030:CDS
AGGGAATAAGATGGTGTACA+GGG 0.616347 4_4:+72280925 Msa0701030:CDS
ACAAGTACGATTAAAGGACT+AGG 0.617860 4_4:-72279824 None:intergenic
ACTACCGGCGCTTTAACTAA+CGG 0.625847 4_4:+72278750 None:intergenic
TATAGAATTGCAGTGCCACA+AGG 0.627861 4_4:-72281221 None:intergenic
ACTACCGTTAGTTAAAGCGC+CGG 0.644867 4_4:-72278754 None:intergenic
CAGCAATGATGATAGTGATG+AGG 0.657518 4_4:+72279562 Msa0701030:CDS
ATTCCAAGGAAGCCAAGGCG+CGG 0.658601 4_4:+72279383 Msa0701030:CDS
CAGTTGGTGCTCAAAACACG+CGG 0.659680 4_4:-72279041 None:intergenic
AAATAGTCACAGCTACAACA+AGG 0.665235 4_4:+72278921 Msa0701030:five_prime_UTR
GAAATTGACCATACCCTGGG+AGG 0.666614 4_4:-72280581 None:intergenic
CGGTAGTTAACTACCGCTGG+GGG 0.667543 4_4:+72278770 Msa0701030:five_prime_UTR
AAGGCGCGGTCGTAAAAGTG+AGG 0.675835 4_4:+72279397 Msa0701030:CDS
TAAGGATGATAGAAACTCTG+AGG 0.680715 4_4:+72279343 Msa0701030:CDS
ACGGTAGTTAACTACCGCTG+GGG 0.691390 4_4:+72278769 Msa0701030:five_prime_UTR
TGGTCACACCATCTCCACGT+TGG 0.708792 4_4:-72279316 None:intergenic
CTTTGCAGAACTCAGAACTG+CGG 0.713652 4_4:+72281086 Msa0701030:intron
AGTTGGTGCTCAAAACACGC+GGG 0.733885 4_4:-72279040 None:intergenic
AAGGGGAAAAGTTTCCAACG+TGG 0.792116 4_4:+72279302 Msa0701030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACTACTTACTATAATT+GGG - chr4_4:72279002-72279021 None:intergenic 15.0%
!! AATTAACTACTTACTATAAT+TGG - chr4_4:72279003-72279022 None:intergenic 15.0%
!! TACTAATTCATATTCTTATA+TGG + chr4_4:72279869-72279888 Msa0701030:intron 15.0%
!!! ATAAATTACAATCATCTTTT+GGG - chr4_4:72280081-72280100 None:intergenic 15.0%
!!! AATAAATTACAATCATCTTT+TGG - chr4_4:72280082-72280101 None:intergenic 15.0%
!! TTAACTACTTACTATAATTG+GGG - chr4_4:72279001-72279020 None:intergenic 20.0%
!! TGAATAGAAATTGAAAACTA+TGG - chr4_4:72279085-72279104 None:intergenic 20.0%
!! TCAATTTCTATTCAACAAAA+TGG + chr4_4:72279091-72279110 Msa0701030:exon 20.0%
!! AAACAAAAACCGAAAAATAA+GGG + chr4_4:72279284-72279303 Msa0701030:CDS 20.0%
!! GAATCATAAAGATATAATGA+AGG + chr4_4:72279502-72279521 Msa0701030:CDS 20.0%
!!! ACATCATTTTTTTTCATTTC+AGG - chr4_4:72280648-72280667 None:intergenic 20.0%
!!! TTTAAAGTAATACGTGATTA+TGG - chr4_4:72280809-72280828 None:intergenic 20.0%
!! TACTTTAAATTTCCTATTGT+AGG + chr4_4:72280820-72280839 Msa0701030:intron 20.0%
!! CAATTAATAACGTAAATACA+AGG - chr4_4:72281181-72281200 None:intergenic 20.0%
!!! ATTGTTTTTTTAATGTCACA+TGG + chr4_4:72281197-72281216 Msa0701030:exon 20.0%
! AGAAATTGAAAACTATGGTT+GGG - chr4_4:72279080-72279099 None:intergenic 25.0%
! TAGAAATTGAAAACTATGGT+TGG - chr4_4:72279081-72279100 None:intergenic 25.0%
! ACAGAACATGATATTGATAT+AGG - chr4_4:72279215-72279234 None:intergenic 25.0%
!!! CTTATTTTTCGGTTTTTGTT+TGG - chr4_4:72279285-72279304 None:intergenic 25.0%
! CAAACAAAAACCGAAAAATA+AGG + chr4_4:72279283-72279302 Msa0701030:CDS 25.0%
! AACAAAAACCGAAAAATAAG+GGG + chr4_4:72279285-72279304 Msa0701030:CDS 25.0%
!!! AAACTTTTCCCCTTATTTTT+CGG - chr4_4:72279296-72279315 None:intergenic 25.0%
! GTTTCTATCATCCTTATTAA+TGG - chr4_4:72279339-72279358 None:intergenic 25.0%
! TCAAAAACAAGTACGATTAA+AGG - chr4_4:72279833-72279852 None:intergenic 25.0%
! AAAGACATCTTAAAAGCAAA+AGG - chr4_4:72280054-72280073 None:intergenic 25.0%
! GATGATTGTAATTTATTCGT+AGG + chr4_4:72280085-72280104 Msa0701030:intron 25.0%
! TTATAACGCAAAAAACCAAT+AGG + chr4_4:72280117-72280136 Msa0701030:intron 25.0%
!! GATTTAGCTATAAGTTTTTG+GGG - chr4_4:72280452-72280471 None:intergenic 25.0%
!! GGATTTAGCTATAAGTTTTT+GGG - chr4_4:72280453-72280472 None:intergenic 25.0%
!! TGGATTTAGCTATAAGTTTT+TGG - chr4_4:72280454-72280473 None:intergenic 25.0%
! ATAACAAAATCAAACACCAA+AGG - chr4_4:72280478-72280497 None:intergenic 25.0%
!!! TTTGATTTTGTTATTCCACA+GGG + chr4_4:72280484-72280503 Msa0701030:intron 25.0%
! CTGATAAATAACAGAAAAGA+TGG - chr4_4:72280728-72280747 None:intergenic 25.0%
!!! AAGCATAGTTTTGTTTGTTT+TGG + chr4_4:72280998-72281017 Msa0701030:intron 25.0%
!!! GGTCAACAAGATTTTTTTTT+AGG - chr4_4:72281296-72281315 None:intergenic 25.0%
AGCTACAACAAGGTATATAT+TGG + chr4_4:72278931-72278950 Msa0701030:five_prime_UTR 30.0%
!! GGGTAATTTTAACAAACAGT+TGG - chr4_4:72279060-72279079 None:intergenic 30.0%
AAGAATCTCGAATGAGAAAA+AGG - chr4_4:72279155-72279174 None:intergenic 30.0%
AATGTGATGAGTAGATAAAG+TGG - chr4_4:72279186-72279205 None:intergenic 30.0%
!! TTTTGTTTGGATGTAGGATT+AGG - chr4_4:72279272-72279291 None:intergenic 30.0%
AATTTCCAACAACAATTCCA+AGG + chr4_4:72279369-72279388 Msa0701030:CDS 30.0%
CATCCAATTAAGAATGTTGT+AGG + chr4_4:72279707-72279726 Msa0701030:CDS 30.0%
TCTCCTACAACATTCTTAAT+TGG - chr4_4:72279713-72279732 None:intergenic 30.0%
!!! TTGTTTTTGAACGCTATAAC+AGG + chr4_4:72279843-72279862 Msa0701030:CDS 30.0%
CTTCTATGCTAAGTGTTTAA+TGG + chr4_4:72279947-72279966 Msa0701030:intron 30.0%
TAATTCCAAGTTACCTATGT+TGG + chr4_4:72280279-72280298 Msa0701030:intron 30.0%
TAATTCCAACATAGGTAACT+TGG - chr4_4:72280287-72280306 None:intergenic 30.0%
!!! TCGCATTTTAATTCCAACAT+AGG - chr4_4:72280295-72280314 None:intergenic 30.0%
!! TGATTAGTCTCACATTAGTT+AGG + chr4_4:72280316-72280335 Msa0701030:intron 30.0%
!!! GTTTGATTTTGTTATTCCAC+AGG + chr4_4:72280483-72280502 Msa0701030:intron 30.0%
!!! CTCAAATTTTGTTTCTACGA+GGG + chr4_4:72280906-72280925 Msa0701030:CDS 30.0%
!!! TTTTGTTTGTTTTGGCATCA+AGG + chr4_4:72281006-72281025 Msa0701030:intron 30.0%
GGTCATTTCTATGTGTCAAT+TGG + chr4_4:72278799-72278818 Msa0701030:five_prime_UTR 35.0%
GGTAAGGTAAGCATATTCTA+TGG - chr4_4:72278853-72278872 None:intergenic 35.0%
!! TAGCTCGTTTCTTTTTGGTA+AGG - chr4_4:72278869-72278888 None:intergenic 35.0%
TTACCAAAAAGAAACGAGCT+AGG + chr4_4:72278868-72278887 Msa0701030:five_prime_UTR 35.0%
AAATAGTCACAGCTACAACA+AGG + chr4_4:72278921-72278940 Msa0701030:five_prime_UTR 35.0%
TTTGGATGTAGGATTAGGTT+CGG - chr4_4:72279267-72279286 None:intergenic 35.0%
!! TTCGGTTTTTGTTTGGATGT+AGG - chr4_4:72279278-72279297 None:intergenic 35.0%
AGATGGTGTGACCATTAATA+AGG + chr4_4:72279325-72279344 Msa0701030:CDS 35.0%
TAAGGATGATAGAAACTCTG+AGG + chr4_4:72279343-72279362 Msa0701030:CDS 35.0%
GATATAATGAAGGACAGTGT+CGG + chr4_4:72279512-72279531 Msa0701030:CDS 35.0%
AAGAATGTTGTAGGAGATGA+TGG + chr4_4:72279716-72279735 Msa0701030:CDS 35.0%
! ATGATGGTGCTGAAATTGAT+TGG + chr4_4:72279732-72279751 Msa0701030:CDS 35.0%
! TGATGGTGCTGAAATTGATT+GGG + chr4_4:72279733-72279752 Msa0701030:CDS 35.0%
ACAAGTACGATTAAAGGACT+AGG - chr4_4:72279827-72279846 None:intergenic 35.0%
AAAACCAATAGGTCGAATGT+AGG + chr4_4:72280128-72280147 Msa0701030:intron 35.0%
TATTCCTACATTCGACCTAT+TGG - chr4_4:72280135-72280154 None:intergenic 35.0%
AGTCTCACATTAGTTAGGAT+TGG + chr4_4:72280321-72280340 Msa0701030:intron 35.0%
GTCTCACATTAGTTAGGATT+GGG + chr4_4:72280322-72280341 Msa0701030:intron 35.0%
TTATAGCTAAATCCAGCCTT+TGG + chr4_4:72280459-72280478 Msa0701030:intron 35.0%
CTGGAAAAATTTGAAAGAGC+TGG + chr4_4:72280517-72280536 Msa0701030:CDS 35.0%
! AGAAAGCAATAAAGGTGTAC+TGG + chr4_4:72280540-72280559 Msa0701030:CDS 35.0%
AAAGAAATTGACCATACCCT+GGG - chr4_4:72280587-72280606 None:intergenic 35.0%
AAAAGAAATTGACCATACCC+TGG - chr4_4:72280588-72280607 None:intergenic 35.0%
TAGTGAGTGATCATGAAGTA+AGG - chr4_4:72280691-72280710 None:intergenic 35.0%
CAATCTTAATCGCCTACAAT+AGG - chr4_4:72280835-72280854 None:intergenic 35.0%
CATTAACATCGAGAAAGACT+TGG + chr4_4:72280856-72280875 Msa0701030:CDS 35.0%
CCTCGTAGAAACAAAATTTG+AGG - chr4_4:72280908-72280927 None:intergenic 35.0%
!!! CCTCAAATTTTGTTTCTACG+AGG + chr4_4:72280905-72280924 Msa0701030:CDS 35.0%
GCTTATTGTACACACATTGA+AGG - chr4_4:72280982-72281001 None:intergenic 35.0%
! TCTCCTAGCTCGTTTCTTTT+TGG - chr4_4:72278874-72278893 None:intergenic 40.0%
! AAGAAGCTTCTGAGAAGAGA+AGG - chr4_4:72278959-72278978 None:intergenic 40.0%
TGAGAAAAAGGTGAGAACGT+TGG - chr4_4:72279143-72279162 None:intergenic 40.0%
TTGGATGTAGGATTAGGTTC+GGG - chr4_4:72279266-72279285 None:intergenic 40.0%
AAAAGTTTCCAACGTGGAGA+TGG + chr4_4:72279308-72279327 Msa0701030:CDS 40.0%
! AGAACACGTTTGCTGCAATT+CGG + chr4_4:72279456-72279475 Msa0701030:CDS 40.0%
TGCAATTCGGCAACAAAATG+CGG + chr4_4:72279469-72279488 Msa0701030:CDS 40.0%
! CTATCATCATTGCTGCGTTT+TGG - chr4_4:72279557-72279576 None:intergenic 40.0%
! CAGCAATGATGATAGTGATG+AGG + chr4_4:72279562-72279581 Msa0701030:CDS 40.0%
! CAATGATGATAGTGATGAGG+AGG + chr4_4:72279565-72279584 Msa0701030:CDS 40.0%
GTGCTGAAATTGATTGGGAA+GGG + chr4_4:72279738-72279757 Msa0701030:CDS 40.0%
TGCTGAAATTGATTGGGAAG+GGG + chr4_4:72279739-72279758 Msa0701030:CDS 40.0%
AGGAGATCAATTGTTTGGAG+TGG + chr4_4:72279783-72279802 Msa0701030:CDS 40.0%
! GGAGATCAATTGTTTGGAGT+GGG + chr4_4:72279784-72279803 Msa0701030:CDS 40.0%
GTACGATTAAAGGACTAGGA+TGG - chr4_4:72279823-72279842 None:intergenic 40.0%
CAAAATCAAACACCAAAGGC+TGG - chr4_4:72280474-72280493 None:intergenic 40.0%
AGAGCTGGAGAAAGCAATAA+AGG + chr4_4:72280532-72280551 Msa0701030:CDS 40.0%
! TGTACTGGAGTGCTAAAGAT+CGG + chr4_4:72280555-72280574 Msa0701030:CDS 40.0%
CAGTACACAAGTGTTACAAG+CGG + chr4_4:72280745-72280764 Msa0701030:intron 40.0%
! AAGAGACTCCAGGTGTTATA+TGG - chr4_4:72280779-72280798 None:intergenic 40.0%
AGGACATTCTCGAACTTTCA+GGG - chr4_4:72280888-72280907 None:intergenic 40.0%
GTTTCTACGAGGGAATAAGA+TGG + chr4_4:72280916-72280935 Msa0701030:CDS 40.0%
AGGGAATAAGATGGTGTACA+GGG + chr4_4:72280925-72280944 Msa0701030:CDS 40.0%
AGCAACAGTGCATCATTATG+AGG - chr4_4:72281061-72281080 None:intergenic 40.0%
TTAATGTCACATGGTCCTTG+TGG + chr4_4:72281206-72281225 Msa0701030:three_prime_UTR 40.0%
TATAGAATTGCAGTGCCACA+AGG - chr4_4:72281224-72281243 None:intergenic 40.0%
TAACGGTAGTTAACTACCGC+TGG + chr4_4:72278767-72278786 Msa0701030:five_prime_UTR 45.0%
AACGGTAGTTAACTACCGCT+GGG + chr4_4:72278768-72278787 Msa0701030:five_prime_UTR 45.0%
AATGACCAAATTACCCCCAG+CGG - chr4_4:72278786-72278805 None:intergenic 45.0%
AGAAACGAGCTAGGAGAAAG+AGG + chr4_4:72278877-72278896 Msa0701030:five_prime_UTR 45.0%
GAAACGAGCTAGGAGAAAGA+GGG + chr4_4:72278878-72278897 Msa0701030:five_prime_UTR 45.0%
! TTGGAGGCATAAGAGCTGTT+TGG - chr4_4:72279124-72279143 None:intergenic 45.0%
GAAAAAGGTGAGAACGTTGG+AGG - chr4_4:72279140-72279159 None:intergenic 45.0%
! TGTAGGATTAGGTTCGGGTT+CGG - chr4_4:72279261-72279280 None:intergenic 45.0%
AAGGGGAAAAGTTTCCAACG+TGG + chr4_4:72279302-72279321 Msa0701030:CDS 45.0%
GGCTTCCTTGGAATTGTTGT+TGG - chr4_4:72279377-72279396 None:intergenic 45.0%
CAACAATTCCAAGGAAGCCA+AGG + chr4_4:72279378-72279397 Msa0701030:CDS 45.0%
! AGATTTTGTACGCGACAGAC+TGG + chr4_4:72279433-72279452 Msa0701030:CDS 45.0%
GCAATTCGGCAACAAAATGC+GGG + chr4_4:72279470-72279489 Msa0701030:CDS 45.0%
! TGATGATAGTGATGAGGAGG+AGG + chr4_4:72279568-72279587 Msa0701030:CDS 45.0%
! GGTGCTGAAATTGATTGGGA+AGG + chr4_4:72279737-72279756 Msa0701030:CDS 45.0%
GGTGCAGGAGATCAATTGTT+TGG + chr4_4:72279778-72279797 Msa0701030:CDS 45.0%
TTGGGGAGTCTAGAAACATC+AGG - chr4_4:72280435-72280454 None:intergenic 45.0%
TCCACAGGGCAAATGATAAC+TGG + chr4_4:72280498-72280517 Msa0701030:intron 45.0%
TCCAGTTATCATTTGCCCTG+TGG - chr4_4:72280502-72280521 None:intergenic 45.0%
TAAAGATCGGTTACCTCCCA+GGG + chr4_4:72280568-72280587 Msa0701030:CDS 45.0%
TAACCTCGCCATATAACACC+TGG + chr4_4:72280768-72280787 Msa0701030:intron 45.0%
TGGAATACGTAAGAGACTCC+AGG - chr4_4:72280789-72280808 None:intergenic 45.0%
GAGGACATTCTCGAACTTTC+AGG - chr4_4:72280889-72280908 None:intergenic 45.0%
GAGGGAATAAGATGGTGTAC+AGG + chr4_4:72280924-72280943 Msa0701030:CDS 45.0%
AAGATGGTGTACAGGGAGAA+AGG + chr4_4:72280932-72280951 Msa0701030:CDS 45.0%
CTTTGCAGAACTCAGAACTG+CGG + chr4_4:72281086-72281105 Msa0701030:intron 45.0%
ACAATGCAAAGAAGCCTGCA+TGG + chr4_4:72281142-72281161 Msa0701030:CDS 45.0%
! GCCTGCATGGATTGATGATA+AGG + chr4_4:72281155-72281174 Msa0701030:CDS 45.0%
GCCTTATCATCAATCCATGC+AGG - chr4_4:72281159-72281178 None:intergenic 45.0%
!! TAAATAAATGATATATAAAA+AGG + chr4_4:72280346-72280365 Msa0701030:intron 5.0%
ACGGTAGTTAACTACCGCTG+GGG + chr4_4:72278769-72278788 Msa0701030:five_prime_UTR 50.0%
AACTACCGCTGGGGGTAATT+TGG + chr4_4:72278778-72278797 Msa0701030:five_prime_UTR 50.0%
! AGTTGGTGCTCAAAACACGC+GGG - chr4_4:72279043-72279062 None:intergenic 50.0%
! CAGTTGGTGCTCAAAACACG+CGG - chr4_4:72279044-72279063 None:intergenic 50.0%
! GTAGGATTAGGTTCGGGTTC+GGG - chr4_4:72279260-72279279 None:intergenic 50.0%
GCAACAAAATGCGGGTGCTT+TGG + chr4_4:72279478-72279497 Msa0701030:CDS 50.0%
! TGATAGTGATGAGGAGGAGG+TGG + chr4_4:72279571-72279590 Msa0701030:CDS 50.0%
GAGGTGGAAGAAGAGGAAGA+TGG + chr4_4:72279587-72279606 Msa0701030:CDS 50.0%
GTGGAAGAAGAGGAAGATGG+TGG + chr4_4:72279590-72279609 Msa0701030:CDS 50.0%
! GAAGAAGAGGAAGATGGTGG+TGG + chr4_4:72279593-72279612 Msa0701030:CDS 50.0%
TTGAGGAAGAGAGTGAGAGC+TGG + chr4_4:72279630-72279649 Msa0701030:CDS 50.0%
TGAGAGCTGGCCATTGGATA+CGG + chr4_4:72279643-72279662 Msa0701030:CDS 50.0%
TGGCCATTGGATACGGATGT+CGG + chr4_4:72279650-72279669 Msa0701030:CDS 50.0%
ATTGGATACGGATGTCGGGT+GGG + chr4_4:72279655-72279674 Msa0701030:CDS 50.0%
AAGGGGAGACTGAGGATAAC+TGG + chr4_4:72279756-72279775 Msa0701030:CDS 50.0%
AGGGGAGACTGAGGATAACT+GGG + chr4_4:72279757-72279776 Msa0701030:CDS 50.0%
CTAAAGATCGGTTACCTCCC+AGG + chr4_4:72280567-72280586 Msa0701030:CDS 50.0%
GAAATTGACCATACCCTGGG+AGG - chr4_4:72280584-72280603 None:intergenic 50.0%
! ACTCCAGGTGTTATATGGCG+AGG - chr4_4:72280774-72280793 None:intergenic 50.0%
CGGTAGTTAACTACCGCTGG+GGG + chr4_4:72278770-72278789 Msa0701030:five_prime_UTR 55.0%
TGGTCACACCATCTCCACGT+TGG - chr4_4:72279319-72279338 None:intergenic 55.0%
ATTCCAAGGAAGCCAAGGCG+CGG + chr4_4:72279383-72279402 Msa0701030:CDS 55.0%
!! TCACTTTTACGACCGCGCCT+TGG - chr4_4:72279398-72279417 None:intergenic 55.0%
AAGGCGCGGTCGTAAAAGTG+AGG + chr4_4:72279397-72279416 Msa0701030:CDS 55.0%
TGAGGAGGAGGTGGAAGAAG+AGG + chr4_4:72279580-72279599 Msa0701030:CDS 55.0%
!! GGAAGATGGTGGTGGAGAGA+AGG + chr4_4:72279601-72279620 Msa0701030:CDS 55.0%
!! AGATGGTGGTGGAGAGAAGG+CGG + chr4_4:72279604-72279623 Msa0701030:CDS 55.0%
TGGAGAGAAGGCGGTGATTG+AGG + chr4_4:72279613-72279632 Msa0701030:CDS 55.0%
AGAGAGTGAGAGCTGGCCAT+TGG + chr4_4:72279637-72279656 Msa0701030:CDS 55.0%
GGCCATTGGATACGGATGTC+GGG + chr4_4:72279651-72279670 Msa0701030:CDS 55.0%
CACCCGACATCCGTATCCAA+TGG - chr4_4:72279656-72279675 None:intergenic 55.0%
CATTGGATACGGATGTCGGG+TGG + chr4_4:72279654-72279673 Msa0701030:CDS 55.0%
TTGGATACGGATGTCGGGTG+GGG + chr4_4:72279656-72279675 Msa0701030:CDS 55.0%
TGATTGGGAAGGGGAGACTG+AGG + chr4_4:72279748-72279767 Msa0701030:CDS 55.0%
GACTGAGGATAACTGGGTGC+AGG + chr4_4:72279763-72279782 Msa0701030:CDS 55.0%
ATCGGTTACCTCCCAGGGTA+TGG + chr4_4:72280573-72280592 Msa0701030:intron 55.0%
ACTCAGAACTGCGGATGAGC+TGG + chr4_4:72281095-72281114 Msa0701030:CDS 55.0%
CGACCGCGCCTTGGCTTCCT+TGG - chr4_4:72279389-72279408 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72278755 72281315 72278755 ID=Msa0701030;Name=Msa0701030
chr4_4 mRNA 72278755 72281315 72278755 ID=Msa0701030-mRNA-1;Parent=Msa0701030;Name=Msa0701030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=355|1|1|1|1|1|4|118|351
chr4_4 exon 72278755 72279864 72278755 ID=Msa0701030-mRNA-1:exon:22067;Parent=Msa0701030-mRNA-1
chr4_4 exon 72280505 72280589 72280505 ID=Msa0701030-mRNA-1:exon:22068;Parent=Msa0701030-mRNA-1
chr4_4 exon 72280842 72280953 72280842 ID=Msa0701030-mRNA-1:exon:22069;Parent=Msa0701030-mRNA-1
chr4_4 exon 72281094 72281315 72281094 ID=Msa0701030-mRNA-1:exon:22070;Parent=Msa0701030-mRNA-1
chr4_4 five_prime_UTR 72278755 72279109 72278755 ID=Msa0701030-mRNA-1:five_prime_utr;Parent=Msa0701030-mRNA-1
chr4_4 CDS 72279110 72279864 72279110 ID=Msa0701030-mRNA-1:cds;Parent=Msa0701030-mRNA-1
chr4_4 CDS 72280505 72280589 72280505 ID=Msa0701030-mRNA-1:cds;Parent=Msa0701030-mRNA-1
chr4_4 CDS 72280842 72280953 72280842 ID=Msa0701030-mRNA-1:cds;Parent=Msa0701030-mRNA-1
chr4_4 CDS 72281094 72281197 72281094 ID=Msa0701030-mRNA-1:cds;Parent=Msa0701030-mRNA-1
chr4_4 three_prime_UTR 72281198 72281315 72281198 ID=Msa0701030-mRNA-1:three_prime_utr;Parent=Msa0701030-mRNA-1
Gene Sequence

>Msa0701030

ATGGTCATTCTCCAAACAGCTCTTATGCCTCCAACGTTCTCACCTTTTTCTCATTCGAGATTCTTATCTTATTCCACTTTATCTACTCATCACATTGTAAAGCCTATATCAATATCATGTTCTGTTTCAACTAACTCTAGTTCAAAACCCGAACCCGAACCTAATCCTACATCCAAACAAAAACCGAAAAATAAGGGGAAAAGTTTCCAACGTGGAGATGGTGTGACCATTAATAAGGATGATAGAAACTCTGAGGATGAATTTCCAACAACAATTCCAAGGAAGCCAAGGCGCGGTCGTAAAAGTGAGGCTATGAAAGTTGAAGATTTTGTACGCGACAGACTGGAGAACACGTTTGCTGCAATTCGGCAACAAAATGCGGGTGCTTTGGAGAATCATAAAGATATAATGAAGGACAGTGTCGGTGATGACTCTGAATCAAAACCAAAACGCAGCAATGATGATAGTGATGAGGAGGAGGTGGAAGAAGAGGAAGATGGTGGTGGAGAGAAGGCGGTGATTGAGGAAGAGAGTGAGAGCTGGCCATTGGATACGGATGTCGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCAATTAAGAATGTTGTAGGAGATGATGGTGCTGAAATTGATTGGGAAGGGGAGACTGAGGATAACTGGGTGCAGGAGATCAATTGTTTGGAGTGGGAGAGTTTTGCTTTCCATCCTAGTCCTTTAATCGTACTTGTTTTTGAACGCTATAACAGGGCAAATGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAATAAAGGTGTACTGGAGTGCTAAAGATCGGTTACCTCCCAGGGCGATTAAGATTGACATTAACATCGAGAAAGACTTGGCTTATGCCCTGAAAGTTCGAGAATGTCCTCAAATTTTGTTTCTACGAGGGAATAAGATGGTGTACAGGGAGAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTTTATTACAATGCAAAGAAGCCTGCATGGATTGATGATAAGGCCTTGTATTTACGTTATTAA

Protein sequence

>Msa0701030

MVILQTALMPPTFSPFSHSRFLSYSTLSTHHIVKPISISCSVSTNSSSKPEPEPNPTSKQKPKNKGKSFQRGDGVTINKDDRNSEDEFPTTIPRKPRRGRKSEAMKVEDFVRDRLENTFAAIRQQNAGALENHKDIMKDSVGDDSESKPKRSNDDSDEEEVEEEEDGGGEKAVIEEESESWPLDTDVGWGIRASEYFEKHPIKNVVGDDGAEIDWEGETEDNWVQEINCLEWESFAFHPSPLIVLVFERYNRANDNWKNLKELEKAIKVYWSAKDRLPPRAIKIDINIEKDLAYALKVRECPQILFLRGNKMVYREKELRTADELVQMIAFFYYNAKKPAWIDDKALYLRY*