Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174860 | sp|P0C8Z0|Y8359_ORYSI | 67.692 | 130 | 40 | 1 | 65 | 194 | 1 | 128 | 7.41e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174860 | G7IF81 | 98.361 | 183 | 3 | 0 | 65 | 247 | 1 | 183 | 1.44e-127 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008090 | Msa0174860 | 0.823156 | 1.611826e-53 | -8.615850e-47 |
| Msa0008410 | Msa0174860 | 0.801005 | 1.104274e-48 | -8.615850e-47 |
| Msa0069330 | Msa0174860 | 0.810997 | 8.726079e-51 | -8.615850e-47 |
| Msa0073670 | Msa0174860 | 0.806340 | 8.626718e-50 | -8.615850e-47 |
| Msa0076000 | Msa0174860 | 0.820433 | 6.877851e-53 | -8.615850e-47 |
| Msa0082280 | Msa0174860 | 0.803155 | 3.990161e-49 | -8.615850e-47 |
| Msa0090360 | Msa0174860 | 0.811130 | 8.167335e-51 | -8.615850e-47 |
| Msa0094470 | Msa0174860 | 0.810219 | 1.285361e-50 | -8.615850e-47 |
| Msa0104550 | Msa0174860 | 0.812524 | 4.059089e-51 | -8.615850e-47 |
| Msa0125540 | Msa0174860 | 0.806190 | 9.277759e-50 | -8.615850e-47 |
| Msa0129060 | Msa0174860 | 0.918482 | 1.475970e-86 | -8.615850e-47 |
| Msa0137840 | Msa0174860 | 0.830217 | 3.326225e-55 | -8.615850e-47 |
| Msa0149390 | Msa0174860 | 0.824436 | 8.078672e-54 | -8.615850e-47 |
| Msa0150570 | Msa0174860 | 0.800682 | 1.285019e-48 | -8.615850e-47 |
| Msa0171290 | Msa0174860 | 0.819870 | 9.256467e-53 | -8.615850e-47 |
| Msa0174770 | Msa0174860 | 0.804861 | 1.762607e-49 | -8.615850e-47 |
| Msa0174860 | Msa0184040 | 0.816245 | 6.106482e-52 | -8.615850e-47 |
| Msa0174860 | Msa0185400 | 0.803745 | 3.010902e-49 | -8.615850e-47 |
| Msa0174860 | Msa0191050 | 0.809687 | 1.673045e-50 | -8.615850e-47 |
| Msa0174860 | Msa0199690 | 0.801807 | 7.564018e-49 | -8.615850e-47 |
| Msa0174860 | Msa0229760 | 0.801222 | 9.968929e-49 | -8.615850e-47 |
| Msa0174860 | Msa0231980 | 0.807744 | 4.351291e-50 | -8.615850e-47 |
| Msa0174860 | Msa0233350 | 0.819300 | 1.248428e-52 | -8.615850e-47 |
| Msa0174860 | Msa0267970 | 0.805152 | 1.532192e-49 | -8.615850e-47 |
| Msa0174860 | Msa0295590 | 0.816262 | 6.055508e-52 | -8.615850e-47 |
| Msa0174860 | Msa0300120 | 0.810791 | 9.670601e-51 | -8.615850e-47 |
| Msa0174860 | Msa0355270 | 0.807019 | 6.201771e-50 | -8.615850e-47 |
| Msa0174860 | Msa0369450 | 0.803951 | 2.727656e-49 | -8.615850e-47 |
| Msa0174860 | Msa0372670 | 0.803276 | 3.766517e-49 | -8.615850e-47 |
| Msa0174860 | Msa0376300 | 0.837624 | 4.658680e-57 | -8.615850e-47 |
| Msa0174860 | Msa0376310 | 0.826823 | 2.195583e-54 | -8.615850e-47 |
| Msa0174860 | Msa0376690 | 0.829177 | 5.956157e-55 | -8.615850e-47 |
| Msa0174860 | Msa0387730 | 0.823456 | 1.371828e-53 | -8.615850e-47 |
| Msa0174860 | Msa0402330 | 0.805071 | 1.593353e-49 | -8.615850e-47 |
| Msa0174860 | Msa0425220 | 0.807078 | 6.025435e-50 | -8.615850e-47 |
| Msa0174860 | Msa0471590 | 0.833749 | 4.460375e-56 | -8.615850e-47 |
| Msa0174860 | Msa0474950 | 0.828824 | 7.253544e-55 | -8.615850e-47 |
| Msa0174860 | Msa0477080 | 0.801257 | 9.804643e-49 | -8.615850e-47 |
| Msa0174860 | Msa0524500 | 0.808260 | 3.380112e-50 | -8.615850e-47 |
| Msa0174860 | Msa0552810 | 0.822513 | 2.275861e-53 | -8.615850e-47 |
| Msa0174860 | Msa0556060 | 0.806338 | 8.635114e-50 | -8.615850e-47 |
| Msa0174860 | Msa0580710 | 0.808674 | 2.757607e-50 | -8.615850e-47 |
| Msa0174860 | Msa0639310 | 0.829756 | 4.307133e-55 | -8.615850e-47 |
| Msa0174860 | Msa0687630 | 0.823184 | 1.588003e-53 | -8.615850e-47 |
| Msa0174860 | Msa0689500 | 0.821027 | 5.021999e-53 | -8.615850e-47 |
| Msa0174860 | Msa0692840 | 0.810045 | 1.400907e-50 | -8.615850e-47 |
| Msa0174860 | Msa0692940 | 0.817342 | 3.466132e-52 | -8.615850e-47 |
| Msa0174860 | Msa0711890 | 0.800300 | 1.537269e-48 | -8.615850e-47 |
| Msa0174860 | Msa0713820 | 0.836482 | 9.117025e-57 | -8.615850e-47 |
| Msa0174860 | Msa0750170 | 0.805454 | 1.324718e-49 | -8.615850e-47 |
| Msa0174860 | Msa0750880 | 0.804630 | 1.969763e-49 | -8.615850e-47 |
| Msa0174860 | Msa0756060 | 0.812508 | 4.092678e-51 | -8.615850e-47 |
| Msa0174860 | Msa0787750 | 0.806297 | 8.808917e-50 | -8.615850e-47 |
| Msa0174860 | Msa0797750 | 0.804882 | 1.745071e-49 | -8.615850e-47 |
| Msa0174860 | Msa0823090 | 0.802302 | 5.983766e-49 | -8.615850e-47 |
| Msa0174860 | Msa0824640 | 0.832771 | 7.815562e-56 | -8.615850e-47 |
| Msa0174860 | Msa0847080 | 0.809926 | 1.486248e-50 | -8.615850e-47 |
| Msa0174860 | Msa0864010 | 0.824389 | 8.288330e-54 | -8.615850e-47 |
| Msa0174860 | Msa0869100 | 0.848027 | 7.962632e-60 | -8.615850e-47 |
| Msa0174860 | Msa0930140 | 0.805730 | 1.159433e-49 | -8.615850e-47 |
| Msa0174860 | Msa0933310 | 0.839598 | 1.440113e-57 | -8.615850e-47 |
| Msa0174860 | Msa0968590 | 0.809287 | 2.038712e-50 | -8.615850e-47 |
| Msa0174860 | Msa0971090 | 0.831697 | 1.441059e-55 | -8.615850e-47 |
| Msa0174860 | Msa1010350 | 0.805684 | 1.185544e-49 | -8.615850e-47 |
| Msa0174860 | Msa1101600 | 0.808600 | 2.860093e-50 | -8.615850e-47 |
| Msa0174860 | Msa1165870 | 0.806337 | 8.637586e-50 | -8.615850e-47 |
| Msa0174860 | Msa1165940 | 0.824705 | 6.982719e-54 | -8.615850e-47 |
| Msa0174860 | Msa1166330 | 0.802307 | 5.969491e-49 | -8.615850e-47 |
| Msa0174860 | Msa1179950 | 0.818423 | 1.975829e-52 | -8.615850e-47 |
| Msa0174860 | Msa1179980 | 0.805845 | 1.096769e-49 | -8.615850e-47 |
| Msa0174860 | Msa1190930 | 0.800897 | 1.161862e-48 | -8.615850e-47 |
| Msa0174860 | Msa1270690 | 0.806381 | 8.457504e-50 | -8.615850e-47 |
| Msa0174860 | Msa1295110 | 0.801340 | 9.431512e-49 | -8.615850e-47 |
| Msa0174860 | Msa1304820 | 0.808021 | 3.801006e-50 | -8.615850e-47 |
| Msa0174860 | Msa1306990 | 0.834047 | 3.755723e-56 | -8.615850e-47 |
| Msa0174860 | Msa1307950 | 0.831954 | 1.245313e-55 | -8.615850e-47 |
| Msa0174860 | Msa1316780 | 0.809690 | 1.670749e-50 | -8.615850e-47 |
| Msa0174860 | Msa1316830 | 0.812883 | 3.387884e-51 | -8.615850e-47 |
| Msa0174860 | Msa1335250 | 0.812040 | 5.177701e-51 | -8.615850e-47 |
| Msa0174860 | Msa1346730 | 0.809892 | 1.511597e-50 | -8.615850e-47 |
| Msa0174860 | Msa1353060 | 0.809692 | 1.668878e-50 | -8.615850e-47 |
| Msa0174860 | Msa1367590 | 0.838038 | 3.645999e-57 | -8.615850e-47 |
| Msa0174860 | Msa1368120 | 0.814873 | 1.233970e-51 | -8.615850e-47 |
| Msa0174860 | Msa1370740 | 0.895863 | 6.396599e-76 | -8.615850e-47 |
| Msa0174860 | Msa1370860 | 0.806554 | 7.775306e-50 | -8.615850e-47 |
| Msa0174860 | Msa1397810 | 0.800277 | 1.553873e-48 | -8.615850e-47 |
| Msa0174860 | Msa1404190 | 0.809964 | 1.458488e-50 | -8.615850e-47 |
| Msa0174860 | Msa1433390 | 0.811818 | 5.786574e-51 | -8.615850e-47 |
| Msa0174860 | Msa1443780 | 0.891605 | 3.409854e-74 | -8.615850e-47 |
| Msa0174860 | Msa1461280 | 0.827539 | 1.479695e-54 | -8.615850e-47 |
| Msa0174860 | Msa1465080 | 0.804366 | 2.235791e-49 | -8.615850e-47 |
| Msa0174860 | Msa1466300 | 0.805864 | 1.086735e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174860 | MtrunA17_Chr1g0195701 | 98.361 | 183 | 3 | 0 | 65 | 247 | 1 | 183 | 2.77e-131 | 368 |
| Msa0174860 | MtrunA17_Chr7g0269271 | 77.778 | 108 | 24 | 0 | 65 | 172 | 1 | 108 | 4.11e-58 | 184 |
| Msa0174860 | MtrunA17_Chr6g0465301 | 45.890 | 146 | 74 | 1 | 65 | 205 | 1 | 146 | 2.20e-39 | 135 |
| Msa0174860 | MtrunA17_Chr6g0460991 | 49.541 | 109 | 54 | 1 | 65 | 173 | 1 | 108 | 6.07e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174860 | AT4G02450.2 | 61.600 | 125 | 45 | 2 | 65 | 187 | 1 | 124 | 2.26e-51 | 167 |
| Msa0174860 | AT4G02450.1 | 61.600 | 125 | 45 | 2 | 65 | 187 | 1 | 124 | 2.33e-51 | 167 |
| Msa0174860 | AT3G03773.1 | 48.252 | 143 | 68 | 4 | 65 | 207 | 1 | 137 | 2.66e-37 | 129 |
| Msa0174860 | AT3G03773.3 | 52.586 | 116 | 53 | 2 | 65 | 180 | 1 | 114 | 6.80e-37 | 126 |
| Msa0174860 | AT3G03773.2 | 45.395 | 152 | 77 | 4 | 56 | 207 | 46 | 191 | 3.01e-36 | 127 |
Find 75 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGTTGATTGGGATAAA+TGG | 0.226101 | 1_4:+60644135 | Msa0174860:CDS |
| GTATGCGTTGTACCTCGTTT+TGG | 0.292489 | 1_4:-60642656 | None:intergenic |
| CATAATACAAGCTAATGTTT+AGG | 0.316115 | 1_4:-60645691 | None:intergenic |
| TGAAGGAAAGACACGGTATC+TGG | 0.322168 | 1_4:+60645777 | Msa0174860:three_prime_UTR |
| GAAGATTGCATAATCTAGTT+TGG | 0.334587 | 1_4:+60642548 | Msa0174860:CDS |
| CACATTATGTGAAAGTTGAT+TGG | 0.336982 | 1_4:+60644126 | Msa0174860:CDS |
| CTATGTCACGATTCAGTTGC+CGG | 0.340941 | 1_4:+60643582 | Msa0174860:CDS |
| ATGTTAAACGAAGAACATTC+TGG | 0.361010 | 1_4:+60642593 | Msa0174860:CDS |
| ATGTGCTTGAAGCAGCTTCC+TGG | 0.366179 | 1_4:-60645543 | None:intergenic |
| ATAATACAAGCTAATGTTTA+GGG | 0.373227 | 1_4:-60645690 | None:intergenic |
| TTGAGATGTTTATTTATTGA+AGG | 0.382394 | 1_4:+60645760 | Msa0174860:three_prime_UTR |
| GGACGGTGCTCTTGCCAGCT+TGG | 0.394866 | 1_4:-60645522 | None:intergenic |
| AGGTCTCGGTGACCTGGACT+TGG | 0.409814 | 1_4:+60644273 | Msa0174860:intron |
| CTTGGGAGGGATGGATTTCT+CGG | 0.410768 | 1_4:+60644291 | Msa0174860:CDS |
| AGTCTGACTGTAGTATCGTT+TGG | 0.426310 | 1_4:+60645629 | Msa0174860:three_prime_UTR |
| ACATTATGTGAAAGTTGATT+GGG | 0.435304 | 1_4:+60644127 | Msa0174860:CDS |
| CTTTGAGCCCACTTGACCTC+CGG | 0.445693 | 1_4:-60643547 | None:intergenic |
| AGCTGGCAAGAGCACCGTCC+AGG | 0.453170 | 1_4:+60645525 | Msa0174860:CDS |
| AAACTAGATTATGCAATCTT+CGG | 0.459179 | 1_4:-60642546 | None:intergenic |
| CATATTCTGTGTAGTGCAAA+AGG | 0.459449 | 1_4:+60644055 | Msa0174860:CDS |
| TCAAAACACCGTCTGGAGTA+AGG | 0.459550 | 1_4:-60643627 | None:intergenic |
| TTTATTAGGTCTCGGTGACC+TGG | 0.461080 | 1_4:+60644267 | Msa0174860:intron |
| AAGAACATTCTGGAAACAAC+AGG | 0.465456 | 1_4:+60642603 | Msa0174860:CDS |
| CAGGAGAGCAAAATTAATGT+AGG | 0.467516 | 1_4:+60644023 | Msa0174860:intron |
| GAAAGTTGATTGGGATAAAT+GGG | 0.470728 | 1_4:+60644136 | Msa0174860:CDS |
| GCTTGAATGCAGTCGTCATC+CGG | 0.473159 | 1_4:+60643528 | Msa0174860:intron |
| GTCGTCATCCGGAGGTCAAG+TGG | 0.482409 | 1_4:+60643539 | Msa0174860:intron |
| CCTTGTCGAAGAGTGGCAAC+TGG | 0.486019 | 1_4:-60643693 | None:intergenic |
| TGACCTGGACTTGGGAGGGA+TGG | 0.491935 | 1_4:+60644282 | Msa0174860:CDS |
| GGAGGTCAAGTGGGCTCAAA+GGG | 0.493027 | 1_4:+60643549 | Msa0174860:CDS |
| TGCAAAAGGCAGAGGATGAA+TGG | 0.496195 | 1_4:+60644069 | Msa0174860:CDS |
| ACTATCGTACTTCAACTTGA+AGG | 0.498116 | 1_4:-60645731 | None:intergenic |
| ACAAGAGGGTAATGATAATG+AGG | 0.504951 | 1_4:+60645480 | Msa0174860:CDS |
| GCCAGCTTGGTCTCCAACCG+TGG | 0.507840 | 1_4:-60645509 | None:intergenic |
| GTTCTTCGTTTAACATGAAG+TGG | 0.507877 | 1_4:-60642586 | None:intergenic |
| CAGAGGATGAATGGTGGAAA+AGG | 0.507991 | 1_4:+60644078 | Msa0174860:CDS |
| CAGTTTAAGATCTTATACTC+AGG | 0.510705 | 1_4:+60645576 | Msa0174860:three_prime_UTR |
| AATCCATCCCTCCCAAGTCC+AGG | 0.516889 | 1_4:-60644285 | None:intergenic |
| CTCGGTGACCTGGACTTGGG+AGG | 0.517191 | 1_4:+60644277 | Msa0174860:CDS |
| CAATCAACTTTCACATAATG+TGG | 0.527025 | 1_4:-60644125 | None:intergenic |
| TTTGACGACGGTGATGATGA+AGG | 0.527145 | 1_4:+60644430 | Msa0174860:CDS |
| CGGAGGTCAAGTGGGCTCAA+AGG | 0.538850 | 1_4:+60643548 | Msa0174860:CDS |
| TCGGTGACCTGGACTTGGGA+GGG | 0.538949 | 1_4:+60644278 | Msa0174860:CDS |
| AATGAGGGAGGTTCCACGGT+TGG | 0.540422 | 1_4:+60645496 | Msa0174860:CDS |
| TCCACGGTTGGAGACCAAGC+TGG | 0.546944 | 1_4:+60645508 | Msa0174860:CDS |
| AAAATTAATGTAGGAGTGAG+AGG | 0.548040 | 1_4:+60644032 | Msa0174860:CDS |
| AACGAGGTACAACGCATACA+AGG | 0.548721 | 1_4:+60642660 | Msa0174860:CDS |
| CTGTGTAGTGCAAAAGGCAG+AGG | 0.555658 | 1_4:+60644061 | Msa0174860:CDS |
| TTTGTGCTGCAGCAATTTGA+GGG | 0.567193 | 1_4:+60644385 | Msa0174860:intron |
| GGGTGATGATGCAGTGGGTG+CGG | 0.586506 | 1_4:+60644405 | Msa0174860:CDS |
| GGTCTCGGTGACCTGGACTT+GGG | 0.589648 | 1_4:+60644274 | Msa0174860:intron |
| CATTAGCTTGTATTATGATG+AGG | 0.593709 | 1_4:+60645697 | Msa0174860:three_prime_UTR |
| AAAAGGTTACTGAAAGCAGA+AGG | 0.595204 | 1_4:+60644095 | Msa0174860:CDS |
| TGATAATGAGGGAGGTTCCA+CGG | 0.595705 | 1_4:+60645492 | Msa0174860:CDS |
| TCGTCATCCGGAGGTCAAGT+GGG | 0.596383 | 1_4:+60643540 | Msa0174860:CDS |
| CAAGAGGGTAATGATAATGA+GGG | 0.603330 | 1_4:+60645481 | Msa0174860:CDS |
| CTTCGACAAGGTTAATGTAG+AGG | 0.606463 | 1_4:+60643705 | Msa0174860:CDS |
| ACATTAACCTTGTCGAAGAG+TGG | 0.607273 | 1_4:-60643700 | None:intergenic |
| GTGGATGAAGATGAAGATGC+GGG | 0.610763 | 1_4:+60644158 | Msa0174860:CDS |
| CCAGTTGCCACTCTTCGACA+AGG | 0.617754 | 1_4:+60643693 | Msa0174860:CDS |
| GTGGCAACTGGAGCTCATAG+AGG | 0.620616 | 1_4:-60643681 | None:intergenic |
| GTGGTCTTCAGCACCAGCAG+TGG | 0.621573 | 1_4:-60643659 | None:intergenic |
| TCAACTTTCACATAATGTGG+AGG | 0.635270 | 1_4:-60644122 | None:intergenic |
| GCTTGAAGCAGCTTCCTGGA+CGG | 0.652191 | 1_4:-60645539 | None:intergenic |
| AAAGTGAACCTTACTCCAGA+CGG | 0.655853 | 1_4:+60643619 | Msa0174860:CDS |
| GCAACTGGAGCTCATAGAGG+TGG | 0.662772 | 1_4:-60643678 | None:intergenic |
| GGTGGATGAAGATGAAGATG+CGG | 0.663693 | 1_4:+60644157 | Msa0174860:CDS |
| ATTTGAGGGTGATGATGCAG+TGG | 0.664488 | 1_4:+60644399 | Msa0174860:CDS |
| AAAGGTTACTGAAAGCAGAA+GGG | 0.668010 | 1_4:+60644096 | Msa0174860:CDS |
| TGAATGCAGTCGTCATCCGG+AGG | 0.670112 | 1_4:+60643531 | Msa0174860:intron |
| AGTTGATTGGGATAAATGGG+TGG | 0.672477 | 1_4:+60644139 | Msa0174860:CDS |
| GAGGGTAATGATAATGAGGG+AGG | 0.683148 | 1_4:+60645484 | Msa0174860:CDS |
| TTTGAGGGTGATGATGCAGT+GGG | 0.686057 | 1_4:+60644400 | Msa0174860:CDS |
| TATTTATTGAAGGAAAGACA+CGG | 0.700279 | 1_4:+60645770 | Msa0174860:three_prime_UTR |
| AAAAGGCAGAGGATGAATGG+TGG | 0.737688 | 1_4:+60644072 | Msa0174860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTGTTAAATTTATTT+TGG | + | chr1_4:60643270-60643289 | Msa0174860:intron | 10.0% |
| !!! | TTCATTTTTATGTTAAAATT+AGG | + | chr1_4:60643414-60643433 | Msa0174860:intron | 10.0% |
| !! | AATTTAACAAAAATGTTTCA+TGG | - | chr1_4:60643265-60643284 | None:intergenic | 15.0% |
| !! | TTTCTTTAATCTTAAACAAA+CGG | + | chr1_4:60645196-60645215 | Msa0174860:intron | 15.0% |
| !! | TGTGAATAGTTTAATTGAAA+TGG | + | chr1_4:60642929-60642948 | Msa0174860:intron | 20.0% |
| !! | TAGATGGTTAATTCAATTTA+TGG | + | chr1_4:60643088-60643107 | Msa0174860:intron | 20.0% |
| !!! | TTTTATGTTAAAATTAGGCA+TGG | + | chr1_4:60643419-60643438 | Msa0174860:intron | 20.0% |
| !! | ACAGTTTATGATAAAAGATT+TGG | + | chr1_4:60643468-60643487 | Msa0174860:intron | 20.0% |
| !!! | TTTATGATAAAAGATTTGGT+GGG | + | chr1_4:60643472-60643491 | Msa0174860:intron | 20.0% |
| !! | TTAGAATGAATATGAAACTA+AGG | - | chr1_4:60643864-60643883 | None:intergenic | 20.0% |
| !!! | TGTAACTAATTTTCTTGTTA+AGG | + | chr1_4:60643897-60643916 | Msa0174860:intron | 20.0% |
| !!! | TTAGTTTTTCCAAGTTATAA+AGG | + | chr1_4:60644211-60644230 | Msa0174860:intron | 20.0% |
| !!! | TAGTTTTTCCAAGTTATAAA+GGG | + | chr1_4:60644212-60644231 | Msa0174860:intron | 20.0% |
| !! | TAAAAATACCCTTTATAACT+TGG | - | chr1_4:60644223-60644242 | None:intergenic | 20.0% |
| !!! | ATATCTAATGGTTTACTTTT+AGG | + | chr1_4:60644682-60644701 | Msa0174860:intron | 20.0% |
| !!! | TATCTAATGGTTTACTTTTA+GGG | + | chr1_4:60644683-60644702 | Msa0174860:intron | 20.0% |
| !! | CCAACAAGAATAAATTAATA+CGG | - | chr1_4:60644722-60644741 | None:intergenic | 20.0% |
| !! | TTCTTGTTGGAAAATTAAAT+AGG | + | chr1_4:60644732-60644751 | Msa0174860:intron | 20.0% |
| !! | ATAATACAAGCTAATGTTTA+GGG | - | chr1_4:60645693-60645712 | None:intergenic | 20.0% |
| !! | TTGAGATGTTTATTTATTGA+AGG | + | chr1_4:60645760-60645779 | Msa0174860:three_prime_UTR | 20.0% |
| !!! | ATCTGGATTTTCTATATTTT+TGG | + | chr1_4:60645794-60645813 | Msa0174860:three_prime_UTR | 20.0% |
| ! | AAACTAGATTATGCAATCTT+CGG | - | chr1_4:60642549-60642568 | None:intergenic | 25.0% |
| !! | TGAAAAATTGTAAAAGTGCA+GGG | - | chr1_4:60642766-60642785 | None:intergenic | 25.0% |
| !!! | TTAGGTGTTTTTGTTTCATA+TGG | + | chr1_4:60642843-60642862 | Msa0174860:intron | 25.0% |
| ! | CAATTAAACTATTCACAGTT+AGG | - | chr1_4:60642926-60642945 | None:intergenic | 25.0% |
| !!! | TATTTTAAACGTGATTAACC+AGG | - | chr1_4:60643047-60643066 | None:intergenic | 25.0% |
| ! | ACACTGAAAATTGTGAAATT+GGG | - | chr1_4:60643154-60643173 | None:intergenic | 25.0% |
| !!! | ATTTTCTAGTGTCTATTCAA+AGG | + | chr1_4:60643308-60643327 | Msa0174860:intron | 25.0% |
| ! | TCTCATTCAATTCATGTAAA+GGG | - | chr1_4:60643336-60643355 | None:intergenic | 25.0% |
| ! | TTCTCATTCAATTCATGTAA+AGG | - | chr1_4:60643337-60643356 | None:intergenic | 25.0% |
| ! | ATGAATTGAATGAGAATTGA+TGG | + | chr1_4:60643341-60643360 | Msa0174860:intron | 25.0% |
| ! | GTTTATGATAAAAGATTTGG+TGG | + | chr1_4:60643471-60643490 | Msa0174860:intron | 25.0% |
| ! | GAGAAAACATTTCTAATTCA+TGG | + | chr1_4:60643729-60643748 | Msa0174860:intron | 25.0% |
| !! | TTTTCCAATGAGTTAAATCA+TGG | + | chr1_4:60643794-60643813 | Msa0174860:intron | 25.0% |
| !! | ACATTATGTGAAAGTTGATT+GGG | + | chr1_4:60644127-60644146 | Msa0174860:CDS | 25.0% |
| ! | TACTTGACTATTATAAAGCA+TGG | + | chr1_4:60644506-60644525 | Msa0174860:intron | 25.0% |
| ! | TTGCATTTGTAGATTACATT+GGG | + | chr1_4:60644564-60644583 | Msa0174860:intron | 25.0% |
| !!! | ATCTAATGGTTTACTTTTAG+GGG | + | chr1_4:60644684-60644703 | Msa0174860:intron | 25.0% |
| ! | CCGTATTAATTTATTCTTGT+TGG | + | chr1_4:60644719-60644738 | Msa0174860:intron | 25.0% |
| ! | GAAAATTGAAATTGACTGTA+GGG | + | chr1_4:60644806-60644825 | Msa0174860:intron | 25.0% |
| ! | AATAACTTAATCAGTTTCAC+TGG | - | chr1_4:60644904-60644923 | None:intergenic | 25.0% |
| !!! | TGTCAATTTTAACTTTTGGA+TGG | - | chr1_4:60645341-60645360 | None:intergenic | 25.0% |
| !!! | GGAATGTCAATTTTAACTTT+TGG | - | chr1_4:60645345-60645364 | None:intergenic | 25.0% |
| ! | ATATGACAATTAAGTTCCTT+AGG | - | chr1_4:60645399-60645418 | None:intergenic | 25.0% |
| ! | GAACTTAATTGTCATATTGT+TGG | + | chr1_4:60645402-60645421 | Msa0174860:intron | 25.0% |
| ! | CATAATACAAGCTAATGTTT+AGG | - | chr1_4:60645694-60645713 | None:intergenic | 25.0% |
| ! | TATTTATTGAAGGAAAGACA+CGG | + | chr1_4:60645770-60645789 | Msa0174860:three_prime_UTR | 25.0% |
| GAAGATTGCATAATCTAGTT+TGG | + | chr1_4:60642548-60642567 | Msa0174860:CDS | 30.0% | |
| ATGTTAAACGAAGAACATTC+TGG | + | chr1_4:60642593-60642612 | Msa0174860:CDS | 30.0% | |
| CTTCTCTCAAACAAAAAATG+AGG | + | chr1_4:60642716-60642735 | Msa0174860:CDS | 30.0% | |
| ! | CTGAAAAATTGTAAAAGTGC+AGG | - | chr1_4:60642767-60642786 | None:intergenic | 30.0% |
| ACTATTCACAGTTAGGATTT+AGG | - | chr1_4:60642919-60642938 | None:intergenic | 30.0% | |
| !!! | GTTTGTGTTTTAGCTACATT+GGG | + | chr1_4:60642951-60642970 | Msa0174860:intron | 30.0% |
| !!! | TTTGTGTTTTAGCTACATTG+GGG | + | chr1_4:60642952-60642971 | Msa0174860:intron | 30.0% |
| AATTAGTTCAGTTGAGTAGA+TGG | + | chr1_4:60643072-60643091 | Msa0174860:intron | 30.0% | |
| CACTGAAAATTGTGAAATTG+GGG | - | chr1_4:60643153-60643172 | None:intergenic | 30.0% | |
| CACACTGAAAATTGTGAAAT+TGG | - | chr1_4:60643155-60643174 | None:intergenic | 30.0% | |
| GTTAATTGCATGCATAATTG+TGG | - | chr1_4:60643210-60643229 | None:intergenic | 30.0% | |
| TATGTTAAAATTAGGCATGG+TGG | + | chr1_4:60643422-60643441 | Msa0174860:intron | 30.0% | |
| ATGTTAAAATTAGGCATGGT+GGG | + | chr1_4:60643423-60643442 | Msa0174860:intron | 30.0% | |
| CAAGCATTAGAAAATCAGAT+AGG | - | chr1_4:60643513-60643532 | None:intergenic | 30.0% | |
| !!! | ACTTTTGCATTTTTGGAATC+CGG | - | chr1_4:60643604-60643623 | None:intergenic | 30.0% |
| !! | AAGGTTCACTTTTGCATTTT+TGG | - | chr1_4:60643611-60643630 | None:intergenic | 30.0% |
| TTCTAATTCATGGATAGCAT+TGG | + | chr1_4:60643739-60643758 | Msa0174860:intron | 30.0% | |
| AATGCCATGATTTAACTCAT+TGG | - | chr1_4:60643801-60643820 | None:intergenic | 30.0% | |
| TAATACATGCATGCACTTAT+GGG | + | chr1_4:60643824-60643843 | Msa0174860:intron | 30.0% | |
| AAAATTAATGTAGGAGTGAG+AGG | + | chr1_4:60644032-60644051 | Msa0174860:CDS | 30.0% | |
| CAATCAACTTTCACATAATG+TGG | - | chr1_4:60644128-60644147 | None:intergenic | 30.0% | |
| ! | CACATTATGTGAAAGTTGAT+TGG | + | chr1_4:60644126-60644145 | Msa0174860:CDS | 30.0% |
| ! | TGAAAGTTGATTGGGATAAA+TGG | + | chr1_4:60644135-60644154 | Msa0174860:CDS | 30.0% |
| ! | GAAAGTTGATTGGGATAAAT+GGG | + | chr1_4:60644136-60644155 | Msa0174860:CDS | 30.0% |
| CAACTGATTGTCTGTTTATT+AGG | + | chr1_4:60644253-60644272 | Msa0174860:intron | 30.0% | |
| ATTGTCTGTTTATTAGGTCT+CGG | + | chr1_4:60644259-60644278 | Msa0174860:intron | 30.0% | |
| CTGCAGCACAAAAATTAATT+AGG | - | chr1_4:60644377-60644396 | None:intergenic | 30.0% | |
| CTTGCATTTGTAGATTACAT+TGG | + | chr1_4:60644563-60644582 | Msa0174860:intron | 30.0% | |
| ! | ACTGCTATTTAAGATACTCT+TGG | + | chr1_4:60644593-60644612 | Msa0174860:intron | 30.0% |
| ! | CTGCTATTTAAGATACTCTT+GGG | + | chr1_4:60644594-60644613 | Msa0174860:intron | 30.0% |
| !! | TTTCATTTCAGTTGATGAGA+TGG | + | chr1_4:60644766-60644785 | Msa0174860:intron | 30.0% |
| GGAAAATTGAAATTGACTGT+AGG | + | chr1_4:60644805-60644824 | Msa0174860:intron | 30.0% | |
| !! | ATGTTTTAGGCTAAAGTTTG+TGG | + | chr1_4:60644834-60644853 | Msa0174860:intron | 30.0% |
| TTAAAGCTATTCTATCACTC+AGG | - | chr1_4:60645107-60645126 | None:intergenic | 30.0% | |
| !! | GTGATAGAATAGCTTTAAAC+TGG | + | chr1_4:60645109-60645128 | Msa0174860:intron | 30.0% |
| ACTATGATCAAGATCAGATT+TGG | - | chr1_4:60645139-60645158 | None:intergenic | 30.0% | |
| TCAAAACCTGAAAAACAAGA+GGG | + | chr1_4:60645466-60645485 | Msa0174860:CDS | 30.0% | |
| ! | CAGTTTAAGATCTTATACTC+AGG | + | chr1_4:60645576-60645595 | Msa0174860:three_prime_UTR | 30.0% |
| !! | CATTAGCTTGTATTATGATG+AGG | + | chr1_4:60645697-60645716 | Msa0174860:three_prime_UTR | 30.0% |
| GTTCTTCGTTTAACATGAAG+TGG | - | chr1_4:60642589-60642608 | None:intergenic | 35.0% | |
| ! | AAGAACATTCTGGAAACAAC+AGG | + | chr1_4:60642603-60642622 | Msa0174860:CDS | 35.0% |
| TCATCAAAAATCCCAAAACG+AGG | + | chr1_4:60642644-60642663 | Msa0174860:CDS | 35.0% | |
| GTTCGATGCTTAGTTGTATT+AGG | + | chr1_4:60642825-60642844 | Msa0174860:intron | 35.0% | |
| !! | GGTGTTTTTGTTTCATATGG+TGG | + | chr1_4:60642846-60642865 | Msa0174860:intron | 35.0% |
| !!! | GGTTTGTGTTTTAGCTACAT+TGG | + | chr1_4:60642950-60642969 | Msa0174860:intron | 35.0% |
| !!! | TTGTGTTTTAGCTACATTGG+GGG | + | chr1_4:60642953-60642972 | Msa0174860:intron | 35.0% |
| ! | GTTGGAGGTGTAGAAAAAAT+GGG | - | chr1_4:60643023-60643042 | None:intergenic | 35.0% |
| ! | TGTTGGAGGTGTAGAAAAAA+TGG | - | chr1_4:60643024-60643043 | None:intergenic | 35.0% |
| GGTTAACTCAGTTGAGTATA+TGG | - | chr1_4:60643189-60643208 | None:intergenic | 35.0% | |
| TGCAATTAACTACTTGTCGA+AGG | + | chr1_4:60643220-60643239 | Msa0174860:intron | 35.0% | |
| CTAATACATGCATGCACTTA+TGG | + | chr1_4:60643823-60643842 | Msa0174860:intron | 35.0% | |
| TCAATCTCTGCTATTGTTTC+AGG | + | chr1_4:60644004-60644023 | Msa0174860:intron | 35.0% | |
| CAGGAGAGCAAAATTAATGT+AGG | + | chr1_4:60644023-60644042 | Msa0174860:intron | 35.0% | |
| CATATTCTGTGTAGTGCAAA+AGG | + | chr1_4:60644055-60644074 | Msa0174860:CDS | 35.0% | |
| AAAAGGTTACTGAAAGCAGA+AGG | + | chr1_4:60644095-60644114 | Msa0174860:CDS | 35.0% | |
| AAAGGTTACTGAAAGCAGAA+GGG | + | chr1_4:60644096-60644115 | Msa0174860:CDS | 35.0% | |
| TCAACTTTCACATAATGTGG+AGG | - | chr1_4:60644125-60644144 | None:intergenic | 35.0% | |
| CAAACAGCATTACTAAGAGA+AGG | - | chr1_4:60644353-60644372 | None:intergenic | 35.0% | |
| CATTTGTAGATTACATTGGG+TGG | + | chr1_4:60644567-60644586 | Msa0174860:intron | 35.0% | |
| GGAAAACTTTCATCTTGCAT+TGG | + | chr1_4:60644615-60644634 | Msa0174860:intron | 35.0% | |
| !! | TTTCATCTTGCATTGGTTGA+TGG | + | chr1_4:60644622-60644641 | Msa0174860:intron | 35.0% |
| !!! | TCAGTTGATGAGATGGTTTT+TGG | + | chr1_4:60644773-60644792 | Msa0174860:intron | 35.0% |
| !!! | GATGGTTTTTGGTAGACATT+TGG | + | chr1_4:60644784-60644803 | Msa0174860:intron | 35.0% |
| ! | AAAGTTTGTGGCTTTTCTAG+TGG | + | chr1_4:60644846-60644865 | Msa0174860:intron | 35.0% |
| ! | TGATCAAGATCAGATTTGGT+GGG | - | chr1_4:60645135-60645154 | None:intergenic | 35.0% |
| ATGATCAAGATCAGATTTGG+TGG | - | chr1_4:60645136-60645155 | None:intergenic | 35.0% | |
| AAACGGTAATAGATGGTGAA+GGG | - | chr1_4:60645223-60645242 | None:intergenic | 35.0% | |
| TAAACGGTAATAGATGGTGA+AGG | - | chr1_4:60645224-60645243 | None:intergenic | 35.0% | |
| GTCACTTAAACGGTAATAGA+TGG | - | chr1_4:60645230-60645249 | None:intergenic | 35.0% | |
| AGTCGTAAGAGTCACTTAAA+CGG | - | chr1_4:60645240-60645259 | None:intergenic | 35.0% | |
| GTCAAAACCTGAAAAACAAG+AGG | + | chr1_4:60645465-60645484 | Msa0174860:CDS | 35.0% | |
| !!! | TCATTACCCTCTTGTTTTTC+AGG | - | chr1_4:60645475-60645494 | None:intergenic | 35.0% |
| ! | ACAAGAGGGTAATGATAATG+AGG | + | chr1_4:60645480-60645499 | Msa0174860:CDS | 35.0% |
| ! | CAAGAGGGTAATGATAATGA+GGG | + | chr1_4:60645481-60645500 | Msa0174860:CDS | 35.0% |
| ACTATCGTACTTCAACTTGA+AGG | - | chr1_4:60645734-60645753 | None:intergenic | 35.0% | |
| ! | TATGCGTTGTACCTCGTTTT+GGG | - | chr1_4:60642658-60642677 | None:intergenic | 40.0% |
| AAACGTGATTAACCAGGTGT+TGG | - | chr1_4:60643041-60643060 | None:intergenic | 40.0% | |
| ! | TAACTACTTGTCGAAGGTGT+AGG | + | chr1_4:60643226-60643245 | Msa0174860:intron | 40.0% |
| CAGTGCTAATTGAACAGTCA+TGG | + | chr1_4:60643365-60643384 | Msa0174860:intron | 40.0% | |
| AAAGTGAACCTTACTCCAGA+CGG | + | chr1_4:60643619-60643638 | Msa0174860:CDS | 40.0% | |
| GAAAAAGTCAAAACACCGTC+TGG | - | chr1_4:60643637-60643656 | None:intergenic | 40.0% | |
| ACATTAACCTTGTCGAAGAG+TGG | - | chr1_4:60643703-60643722 | None:intergenic | 40.0% | |
| CTTCGACAAGGTTAATGTAG+AGG | + | chr1_4:60643705-60643724 | Msa0174860:CDS | 40.0% | |
| AGTTGATTGGGATAAATGGG+TGG | + | chr1_4:60644139-60644158 | Msa0174860:CDS | 40.0% | |
| ! | TTTTGTGCTGCAGCAATTTG+AGG | + | chr1_4:60644384-60644403 | Msa0174860:intron | 40.0% |
| TTTGTGCTGCAGCAATTTGA+GGG | + | chr1_4:60644385-60644404 | Msa0174860:intron | 40.0% | |
| TGCCACAACATATGCATGTA+CGG | - | chr1_4:60644536-60644555 | None:intergenic | 40.0% | |
| CCAGACACAAAAGATGAAAC+AGG | - | chr1_4:60644654-60644673 | None:intergenic | 40.0% | |
| ! | CCTGTTTCATCTTTTGTGTC+TGG | + | chr1_4:60644651-60644670 | Msa0174860:intron | 40.0% |
| CTGGCTGACACTATATCTAA+TGG | + | chr1_4:60644670-60644689 | Msa0174860:intron | 40.0% | |
| ! | CTGTAGGGCAACTATGTTTT+AGG | + | chr1_4:60644821-60644840 | Msa0174860:intron | 40.0% |
| ATATCATATCTTACCCCACC+TGG | + | chr1_4:60645042-60645061 | Msa0174860:intron | 40.0% | |
| TATCACTCAGGAATCCAGAA+TGG | - | chr1_4:60645095-60645114 | None:intergenic | 40.0% | |
| ! | GAGGCACTATAAACAACAGT+AGG | - | chr1_4:60645366-60645385 | None:intergenic | 40.0% |
| AGTCTGACTGTAGTATCGTT+TGG | + | chr1_4:60645629-60645648 | Msa0174860:three_prime_UTR | 40.0% | |
| ! | GTATGCGTTGTACCTCGTTT+TGG | - | chr1_4:60642659-60642678 | None:intergenic | 45.0% |
| AACGAGGTACAACGCATACA+AGG | + | chr1_4:60642660-60642679 | Msa0174860:CDS | 45.0% | |
| ! | TTTTCTACACCTCCAACACC+TGG | + | chr1_4:60643026-60643045 | Msa0174860:intron | 45.0% |
| ! | GTCGAAGGTGTAGGAAAAGT+TGG | + | chr1_4:60643235-60643254 | Msa0174860:intron | 45.0% |
| CTATGTCACGATTCAGTTGC+CGG | + | chr1_4:60643582-60643601 | Msa0174860:CDS | 45.0% | |
| ! | TCAAAACACCGTCTGGAGTA+AGG | - | chr1_4:60643630-60643649 | None:intergenic | 45.0% |
| !! | TTGACTTTTTCTGCCACTGC+TGG | + | chr1_4:60643646-60643665 | Msa0174860:CDS | 45.0% |
| TGCAAAAGGCAGAGGATGAA+TGG | + | chr1_4:60644069-60644088 | Msa0174860:CDS | 45.0% | |
| AAAAGGCAGAGGATGAATGG+TGG | + | chr1_4:60644072-60644091 | Msa0174860:CDS | 45.0% | |
| ! | CAGAGGATGAATGGTGGAAA+AGG | + | chr1_4:60644078-60644097 | Msa0174860:CDS | 45.0% |
| GGTGGATGAAGATGAAGATG+CGG | + | chr1_4:60644157-60644176 | Msa0174860:CDS | 45.0% | |
| GTGGATGAAGATGAAGATGC+GGG | + | chr1_4:60644158-60644177 | Msa0174860:CDS | 45.0% | |
| TTTATTAGGTCTCGGTGACC+TGG | + | chr1_4:60644267-60644286 | Msa0174860:intron | 45.0% | |
| ! | ATTTGAGGGTGATGATGCAG+TGG | + | chr1_4:60644399-60644418 | Msa0174860:CDS | 45.0% |
| ! | TTTGAGGGTGATGATGCAGT+GGG | + | chr1_4:60644400-60644419 | Msa0174860:CDS | 45.0% |
| ! | TTTGACGACGGTGATGATGA+AGG | + | chr1_4:60644430-60644449 | Msa0174860:CDS | 45.0% |
| GACCGTACATGCATATGTTG+TGG | + | chr1_4:60644531-60644550 | Msa0174860:intron | 45.0% | |
| CAGGTTTGATTACCTGCATG+AGG | + | chr1_4:60645012-60645031 | Msa0174860:intron | 45.0% | |
| AATCCAGAATGGTGCAACTG+GGG | - | chr1_4:60645084-60645103 | None:intergenic | 45.0% | |
| GAATCCAGAATGGTGCAACT+GGG | - | chr1_4:60645085-60645104 | None:intergenic | 45.0% | |
| TTCCTTAGGTCTACAGCTTG+AGG | - | chr1_4:60645385-60645404 | None:intergenic | 45.0% | |
| ! | GAGGGTAATGATAATGAGGG+AGG | + | chr1_4:60645484-60645503 | Msa0174860:CDS | 45.0% |
| ! | TGATAATGAGGGAGGTTCCA+CGG | + | chr1_4:60645492-60645511 | Msa0174860:CDS | 45.0% |
| TGAAGGAAAGACACGGTATC+TGG | + | chr1_4:60645777-60645796 | Msa0174860:three_prime_UTR | 45.0% | |
| !! | CGTGATTAACCAGGTGTTGG+AGG | - | chr1_4:60643038-60643057 | None:intergenic | 50.0% |
| GCTTGAATGCAGTCGTCATC+CGG | + | chr1_4:60643528-60643547 | Msa0174860:intron | 50.0% | |
| CTGTGTAGTGCAAAAGGCAG+AGG | + | chr1_4:60644061-60644080 | Msa0174860:CDS | 50.0% | |
| ! | CTTGGGAGGGATGGATTTCT+CGG | + | chr1_4:60644291-60644310 | Msa0174860:CDS | 50.0% |
| !! | ACTTTTAGGGGCGTGTCTGT+AGG | + | chr1_4:60644696-60644715 | Msa0174860:intron | 50.0% |
| AGTGAACTAGTAGCCTACGC+AGG | + | chr1_4:60644993-60645012 | Msa0174860:intron | 50.0% | |
| GCAGGTAATCAAACCTGCGT+AGG | - | chr1_4:60645009-60645028 | None:intergenic | 50.0% | |
| GATATCAAGCAGCCTCATGC+AGG | - | chr1_4:60645027-60645046 | None:intergenic | 50.0% | |
| CATATCTTACCCCACCTGGA+TGG | + | chr1_4:60645046-60645065 | Msa0174860:intron | 50.0% | |
| ATCCAGAATGGTGCAACTGG+GGG | - | chr1_4:60645083-60645102 | None:intergenic | 50.0% | |
| GGAATCCAGAATGGTGCAAC+TGG | - | chr1_4:60645086-60645105 | None:intergenic | 50.0% | |
| TGCCTCAAGCTGTAGACCTA+AGG | + | chr1_4:60645380-60645399 | Msa0174860:intron | 50.0% | |
| ATGTGCTTGAAGCAGCTTCC+TGG | - | chr1_4:60645546-60645565 | None:intergenic | 50.0% | |
| TGAATGCAGTCGTCATCCGG+AGG | + | chr1_4:60643531-60643550 | Msa0174860:intron | 55.0% | |
| TCGTCATCCGGAGGTCAAGT+GGG | + | chr1_4:60643540-60643559 | Msa0174860:CDS | 55.0% | |
| CTTTGAGCCCACTTGACCTC+CGG | - | chr1_4:60643550-60643569 | None:intergenic | 55.0% | |
| ! | GGAGGTCAAGTGGGCTCAAA+GGG | + | chr1_4:60643549-60643568 | Msa0174860:CDS | 55.0% |
| GCAACTGGAGCTCATAGAGG+TGG | - | chr1_4:60643681-60643700 | None:intergenic | 55.0% | |
| GTGGCAACTGGAGCTCATAG+AGG | - | chr1_4:60643684-60643703 | None:intergenic | 55.0% | |
| CCTTGTCGAAGAGTGGCAAC+TGG | - | chr1_4:60643696-60643715 | None:intergenic | 55.0% | |
| CCAGTTGCCACTCTTCGACA+AGG | + | chr1_4:60643693-60643712 | Msa0174860:CDS | 55.0% | |
| AATCCATCCCTCCCAAGTCC+AGG | - | chr1_4:60644288-60644307 | None:intergenic | 55.0% | |
| !! | GTGGGTGCGGATTTTGACGA+CGG | + | chr1_4:60644418-60644437 | Msa0174860:CDS | 55.0% |
| AACACGGTAGCCATCCAGGT+GGG | - | chr1_4:60645059-60645078 | None:intergenic | 55.0% | |
| TAACACGGTAGCCATCCAGG+TGG | - | chr1_4:60645060-60645079 | None:intergenic | 55.0% | |
| TGGTGCAACTGGGGGTAACA+CGG | - | chr1_4:60645075-60645094 | None:intergenic | 55.0% | |
| TACCCCCAGTTGCACCATTC+TGG | + | chr1_4:60645078-60645097 | Msa0174860:intron | 55.0% | |
| AATGAGGGAGGTTCCACGGT+TGG | + | chr1_4:60645496-60645515 | Msa0174860:CDS | 55.0% | |
| GCTTGAAGCAGCTTCCTGGA+CGG | - | chr1_4:60645542-60645561 | None:intergenic | 55.0% | |
| GTCGTCATCCGGAGGTCAAG+TGG | + | chr1_4:60643539-60643558 | Msa0174860:intron | 60.0% | |
| ! | CGGAGGTCAAGTGGGCTCAA+AGG | + | chr1_4:60643548-60643567 | Msa0174860:CDS | 60.0% |
| GTGGTCTTCAGCACCAGCAG+TGG | - | chr1_4:60643662-60643681 | None:intergenic | 60.0% | |
| AGGTCTCGGTGACCTGGACT+TGG | + | chr1_4:60644273-60644292 | Msa0174860:intron | 60.0% | |
| GGTCTCGGTGACCTGGACTT+GGG | + | chr1_4:60644274-60644293 | Msa0174860:intron | 60.0% | |
| TCGGTGACCTGGACTTGGGA+GGG | + | chr1_4:60644278-60644297 | Msa0174860:CDS | 60.0% | |
| TGACCTGGACTTGGGAGGGA+TGG | + | chr1_4:60644282-60644301 | Msa0174860:CDS | 60.0% | |
| ! | GGGTGATGATGCAGTGGGTG+CGG | + | chr1_4:60644405-60644424 | Msa0174860:CDS | 60.0% |
| ACACGGTAGCCATCCAGGTG+GGG | - | chr1_4:60645058-60645077 | None:intergenic | 60.0% | |
| GGGTAACACGGTAGCCATCC+AGG | - | chr1_4:60645063-60645082 | None:intergenic | 60.0% | |
| TCCACGGTTGGAGACCAAGC+TGG | + | chr1_4:60645508-60645527 | Msa0174860:CDS | 60.0% | |
| CTCGGTGACCTGGACTTGGG+AGG | + | chr1_4:60644277-60644296 | Msa0174860:CDS | 65.0% | |
| GCCAGCTTGGTCTCCAACCG+TGG | - | chr1_4:60645512-60645531 | None:intergenic | 65.0% | |
| GGACGGTGCTCTTGCCAGCT+TGG | - | chr1_4:60645525-60645544 | None:intergenic | 65.0% | |
| !! | AGCTGGCAAGAGCACCGTCC+AGG | + | chr1_4:60645525-60645544 | Msa0174860:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60642541 | 60645844 | 60642541 | ID=Msa0174860;Name=Msa0174860 |
| chr1_4 | mRNA | 60642541 | 60645844 | 60642541 | ID=Msa0174860-mRNA-1;Parent=Msa0174860;Name=Msa0174860-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.83|1|1|1|6|277|247 |
| chr1_4 | exon | 60642541 | 60642737 | 60642541 | ID=Msa0174860-mRNA-1:exon:19216;Parent=Msa0174860-mRNA-1 |
| chr1_4 | exon | 60643540 | 60643726 | 60643540 | ID=Msa0174860-mRNA-1:exon:19217;Parent=Msa0174860-mRNA-1 |
| chr1_4 | exon | 60644026 | 60644179 | 60644026 | ID=Msa0174860-mRNA-1:exon:19218;Parent=Msa0174860-mRNA-1 |
| chr1_4 | exon | 60644275 | 60644312 | 60644275 | ID=Msa0174860-mRNA-1:exon:19219;Parent=Msa0174860-mRNA-1 |
| chr1_4 | exon | 60644397 | 60644451 | 60644397 | ID=Msa0174860-mRNA-1:exon:19220;Parent=Msa0174860-mRNA-1 |
| chr1_4 | exon | 60645455 | 60645844 | 60645455 | ID=Msa0174860-mRNA-1:exon:19221;Parent=Msa0174860-mRNA-1 |
| chr1_4 | CDS | 60642541 | 60642737 | 60642541 | ID=Msa0174860-mRNA-1:cds;Parent=Msa0174860-mRNA-1 |
| chr1_4 | CDS | 60643540 | 60643726 | 60643540 | ID=Msa0174860-mRNA-1:cds;Parent=Msa0174860-mRNA-1 |
| chr1_4 | CDS | 60644026 | 60644179 | 60644026 | ID=Msa0174860-mRNA-1:cds;Parent=Msa0174860-mRNA-1 |
| chr1_4 | CDS | 60644275 | 60644312 | 60644275 | ID=Msa0174860-mRNA-1:cds;Parent=Msa0174860-mRNA-1 |
| chr1_4 | CDS | 60644397 | 60644451 | 60644397 | ID=Msa0174860-mRNA-1:cds;Parent=Msa0174860-mRNA-1 |
| chr1_4 | CDS | 60645455 | 60645567 | 60645455 | ID=Msa0174860-mRNA-1:cds;Parent=Msa0174860-mRNA-1 |
| chr1_4 | three_prime_UTR | 60645568 | 60645844 | 60645568 | ID=Msa0174860-mRNA-1:three_prime_utr;Parent=Msa0174860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
