AlfalfaGEDB | Msa1302630

M. sativa cultivar zhongmu-4 / Msa1302630

KEGG: K05933
GO: GO:0008150 GO:0008152 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0042445 GO:0042446 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901576
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1302630	XP_039688858.1	96.907	291	9	0	1	291	1	291	0.0	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1302630	sp\|P31237\|ACCO_ACTDE	82.075	318	53	2	1	314	1	318	0.0	535

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1302630	A0A445IV52	86.538	312	42	0	1	312	1	312	0.0	562

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa1302630	-0.819884	9.186749e-53	-8.615850e-47
Msa0002110	Msa1302630	-0.812811	3.513581e-51	-8.615850e-47
Msa0002690	Msa1302630	-0.851188	1.044411e-60	-8.615850e-47
Msa0002700	Msa1302630	-0.843261	1.562327e-58	-8.615850e-47
Msa0003340	Msa1302630	-0.809266	2.060453e-50	-8.615850e-47
Msa0004180	Msa1302630	-0.856672	2.746344e-62	-8.615850e-47
Msa0004940	Msa1302630	0.803813	2.914149e-49	-8.615850e-47
Msa0004990	Msa1302630	0.804781	1.832114e-49	-8.615850e-47
Msa0007570	Msa1302630	-0.856515	3.053842e-62	-8.615850e-47
Msa0007810	Msa1302630	-0.853966	1.685049e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1302630	MtrunA17_Chr2g0289341	87.055	309	38	2	1	308	1	308	0.0	551
Msa1302630	MtrunA17_Chr3g0121141	75.000	316	75	2	1	315	1	313	4.72e-180	499
Msa1302630	MtrunA17_Chr5g0439011	72.990	311	81	2	1	310	2	310	1.20e-172	481
Msa1302630	MtrunA17_Chr3g0125201	53.226	310	132	5	5	306	4	308	1.20e-107	316
Msa1302630	MtrunA17_Chr4g0075431	93.252	163	10	1	1	163	1	162	3.81e-99	289
Msa1302630	MtrunA17_Chr6g0488511	47.368	304	146	5	5	304	4	297	6.38e-98	291
Msa1302630	MtrunA17_Chr4g0075471	97.826	138	3	0	154	291	24	161	4.59e-97	283
Msa1302630	MtrunA17_Chr5g0437181	36.825	315	185	6	1	305	46	356	1.21e-66	213
Msa1302630	MtrunA17_Chr3g0113641	36.218	312	185	6	4	305	50	357	2.14e-63	204
Msa1302630	MtrunA17_Chr7g0242551	35.669	314	185	6	4	305	54	362	4.31e-61	198

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1302630	AT1G05010.1	70.898	323	86	3	1	315	1	323	3.44e-173	483
Msa1302630	AT1G12010.1	71.895	306	82	1	3	308	6	307	9.39e-171	476
Msa1302630	AT1G62380.1	70.382	314	88	2	3	315	6	315	6.65e-169	472
Msa1302630	AT1G77330.1	52.077	313	130	6	5	306	4	307	9.25e-106	311
Msa1302630	AT2G19590.1	47.059	306	149	4	3	306	10	304	2.76e-105	310
Msa1302630	AT2G19590.2	48.000	275	130	4	34	306	26	289	9.71e-94	280
Msa1302630	AT5G24530.1	35.135	296	174	7	1	286	35	322	3.43e-58	191
Msa1302630	AT5G05600.1	36.486	296	163	8	5	284	63	349	7.43e-58	191
Msa1302630	AT2G38240.1	33.673	294	180	5	3	287	47	334	6.26e-56	185
Msa1302630	AT3G11180.1	35.739	291	170	6	4	284	95	378	3.05e-55	184

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Find 88 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGCTTGTGAAAATT+GGG	0.255457	8_3:-65212473	Msa1302630:CDS
AAAGAAATGGTAGCAAGCAA+AGG	0.566022	8_3:-65211995	Msa1302630:CDS
AAAGATGCTTGTGAAAATTG+GGG	0.528531	8_3:-65212472	Msa1302630:CDS
AAAGTCTTTCATGGATCCAA+GGG	0.606069	8_3:-65211552	Msa1302630:CDS
AACTTTGTCCATCAACTCTA+TGG	0.333621	8_3:+65212066	None:intergenic
AATCTCTCCTGCAGCAGCCT+TGG	0.474285	8_3:-65211050	Msa1302630:CDS
ACAAGAAGCGTATGGAGCAA+AGG	0.585634	8_3:-65212021	Msa1302630:CDS
ACAATGGAATGACGCATTGG+TGG	0.574276	8_3:+65211366	None:intergenic
ACATGCTTAGGCAGTTGGTA+TGG	0.424335	8_3:+65210892	None:intergenic
ACTTGCTGTGTGAGAATCTT+GGG	0.390042	8_3:-65211596	Msa1302630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGCTTGTGAAAATTG+GGG	-	chr8_3:65210813-65210832	Msa1302630:three_prime_UTR	30.0%
GTACTACTAATTAGTATGTC+CGG	+	chr8_3:65211058-65211077	None:intergenic	30.0%
CAACTTCATCAAACAACATA+AGG	+	chr8_3:65211183-65211202	None:intergenic	30.0%
ATCTCTGATATGTTAGAGTT+AGG	+	chr8_3:65211383-65211402	None:intergenic	30.0%
GATTTGAACCTTCATATTGT+GGG	-	chr8_3:65211478-65211497	Msa1302630:CDS	30.0%
TTTACTATTCCAAGATGACA+AGG	-	chr8_3:65211852-65211871	Msa1302630:intron	30.0%
TGAGGTATAGTACTAATCAA+AGG	-	chr8_3:65211963-65211982	Msa1302630:CDS	30.0%
GAGGTATAGTACTAATCAAA+GGG	-	chr8_3:65211964-65211983	Msa1302630:CDS	30.0%
TTAAAACAGGTGATTACCAA+TGG	-	chr8_3:65212119-65212138	Msa1302630:intron	30.0%
AAAGATGCTTGTGAAAATTG+GGG	-	chr8_3:65210813-65210832	Msa1302630:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	65210741	65212566	65210741	ID=Msa1302630;Name=Msa1302630
chr8_3	mRNA	65210741	65212566	65210741	ID=Msa1302630-mRNA-1;Parent=Msa1302630;Name=Msa1302630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.75\|1\|1\|1\|4\|157\|315
chr8_3	exon	65210741	65211179	65210741	ID=Msa1302630-mRNA-1:exon:19785;Parent=Msa1302630-mRNA-1
chr8_3	exon	65211341	65211674	65211341	ID=Msa1302630-mRNA-1:exon:19784;Parent=Msa1302630-mRNA-1
chr8_3	exon	65211881	65212107	65211881	ID=Msa1302630-mRNA-1:exon:19783;Parent=Msa1302630-mRNA-1
chr8_3	exon	65212462	65212566	65212462	ID=Msa1302630-mRNA-1:exon:19782;Parent=Msa1302630-mRNA-1
chr8_3	CDS	65212462	65212566	65212462	ID=Msa1302630-mRNA-1:cds;Parent=Msa1302630-mRNA-1
chr8_3	CDS	65211881	65212107	65211881	ID=Msa1302630-mRNA-1:cds;Parent=Msa1302630-mRNA-1
chr8_3	CDS	65211341	65211674	65211341	ID=Msa1302630-mRNA-1:cds;Parent=Msa1302630-mRNA-1
chr8_3	CDS	65210898	65211179	65210898	ID=Msa1302630-mRNA-1:cds;Parent=Msa1302630-mRNA-1
chr8_3	three_prime_UTR	65210741	65210897	65210741	ID=Msa1302630-mRNA-1:three_prime_utr;Parent=Msa1302630-mRNA-1

Gene Sequence

>Msa1302630

ATGGAGAAGTTTCCAGTAGTTGACATGAAGAATCTTAACACTGAAGAGAAGGCATCAACCATGGAGATTATAAAAGATGCTTGTGAAAATTGGGGTTTCTTTGAGTTGGTGAACCATGGGATATCCATAGAGTTGATGGACAAAGTTGAGAAGCTGACAAAAGAAAACTACAAGAAGCGTATGGAGCAAAGGTTCAAAGAAATGGTAGCAAGCAAAGGTTTAGAGTTTGCTCAGTCAGAAATCAATGACTTGGATTGGGAAAGCACTTTCTTTTTGCGCCACCTTCCTAACTCTAACATATCAGAGATCCTTGATCTTGATCATGACTACAGGAAGGCAATGAAGGAATTTGCAGTGGAACTTGAGAAACTGGCTGAGCTACTTCTTGACTTGCTGTGTGAGAATCTTGGGCTAGAGAAAGGGTATTTGAAGAAAGTCTTTCATGGATCCAAGGGACCAAATTTTGGAACCAAAGTTAGCAACTACCCTCCTTGTCCTAAGCCAGATCTTATCAAAGGACTCAGAGCCCACACAGATGCTGGTGGCATAATTTTACTATTCCAAGATGACAAGGTTGGTGGACTTCAGCTCCTTAAAGATGGCCAATGGATTGATGTCCCACCAATGCGTCATTCCATTGTTATCAACCTTGGTGACCAAATTGAGGTGATTACCAATGGCAAATACAAGAGTGTGTTGCACCGTGTAATTGCTCAAACAGAAGGGAACAGAATGTCCATAGCATCATTTTATAATCCAGGCAATGATGCAGTAATCTCTCCTGCAGCAGCCTTGGTGAAGGAATTAGATGTGACAAACCAAGTTTACCCAAAATTTGTTTTTGATGATTACATGAAACTCTATGCTGGCCTCAAATTCCAAGCCAAAGAGCCAAGATTTGAAGCTATGAAGGCCATGGAATCCAACATTCCCATACCAACTGCCTAA

Protein sequence

>Msa1302630

MEKFPVVDMKNLNTEEKASTMEIIKDACENWGFFELVNHGISIELMDKVEKLTKENYKKRMEQRFKEMVASKGLEFAQSEINDLDWESTFFLRHLPNSNISEILDLDHDYRKAMKEFAVELEKLAELLLDLLCENLGLEKGYLKKVFHGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVGGLQLLKDGQWIDVPPMRHSIVINLGDQIEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGNDAVISPAAALVKELDVTNQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAMESNIPIPTA*